Query 021799
Match_columns 307
No_of_seqs 182 out of 268
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 09:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021799.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021799hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qaln1 g.39.1.7 (N:1-100) Rib 24.4 22 0.0016 26.1 2.7 26 253-278 48-73 (100)
2 d1z1ba1 d.10.1.4 (A:11-59) lam 17.1 13 0.00093 24.3 -0.1 23 263-286 3-25 (49)
3 d1t95a1 a.5.8.1 (A:87-161) Hyp 16.8 11 0.0008 26.5 -0.5 12 275-286 29-40 (75)
4 d1hc7a3 d.68.5.1 (A:404-477) C 11.0 54 0.004 22.4 1.9 12 266-277 53-64 (74)
5 d1x4sa1 g.85.1.2 (A:8-53) Zinc 9.9 42 0.0031 21.3 0.8 25 267-291 9-37 (46)
6 d1y0jb1 g.37.1.2 (B:1-36) U-sh 9.2 60 0.0043 19.2 1.3 15 273-287 5-19 (36)
7 d2glia5 g.37.1.1 (A:229-257) F 9.2 32 0.0024 19.9 0.0 17 266-282 3-19 (29)
8 d1zaka2 g.41.2.1 (A:128-158) M 8.3 41 0.003 19.7 0.2 12 277-288 3-14 (31)
9 d1jaea1 b.71.1.1 (A:379-471) A 7.6 1.8E+02 0.013 20.8 3.7 42 230-274 3-54 (93)
10 d1nj1a2 d.68.5.1 (A:411-481) C 7.2 51 0.0037 22.3 0.3 13 266-278 52-64 (71)
No 1
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
Probab=24.35 E-value=22 Score=26.06 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=19.0
Q ss_pred ccccCCCCCCCCCcccccCCCCcCCC
Q 021799 253 SELSTTSVPYPERAVCAVTGLPAKNT 278 (307)
Q Consensus 253 ~~~~~~~~~~p~~~~C~iTg~pA~Y~ 278 (307)
..+|+.+.+.-.+..|.|||.|--|.
T Consensus 48 ~~LPrnss~tRirnRC~~TGR~Rg~~ 73 (100)
T d2qaln1 48 QTLPRDSSPSRQRNRCRQTGRPHGFL 73 (100)
T ss_dssp TTTTSTTCSTTCCCCCSSSCCSSSCB
T ss_pred hcCCccchhHHHHhhhccCCCcceee
Confidence 34566555555678999999987766
No 2
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=17.12 E-value=13 Score=24.30 Aligned_cols=23 Identities=13% Similarity=-0.204 Sum_probs=17.2
Q ss_pred CCCcccccCCCCcCCCCCCCCcch
Q 021799 263 PERAVCAVTGLPAKNTMKRTTIAT 286 (307)
Q Consensus 263 p~~~~C~iTg~pA~Y~DP~T~l~y 286 (307)
|...+|-. +.--.|++|.||.-|
T Consensus 3 PpNLY~k~-~~y~~yr~P~tGk~~ 25 (49)
T d1z1ba1 3 PPNLYIRN-NGYYCYRDPRTGKEF 25 (49)
T ss_dssp CTTEEEET-TTEEEEECTTTCCEE
T ss_pred Cccceecc-CCeEEeecCCCCcee
Confidence 44557873 446789999999887
No 3
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=16.80 E-value=11 Score=26.50 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=10.4
Q ss_pred cCCCCCCCCcch
Q 021799 275 AKNTMKRTTIAT 286 (307)
Q Consensus 275 A~Y~DP~T~l~y 286 (307)
..|.||.|+.||
T Consensus 29 ~~~VnP~T~~P~ 40 (75)
T d1t95a1 29 RNTIDPRTNAPH 40 (75)
T ss_dssp HHEEBTTTTBCC
T ss_pred HhccCCCCCCCC
Confidence 467899999999
No 4
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]}
Probab=11.00 E-value=54 Score=22.39 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=10.6
Q ss_pred cccccCCCCcCC
Q 021799 266 AVCAVTGLPAKN 277 (307)
Q Consensus 266 ~~C~iTg~pA~Y 277 (307)
..|.++|.||+|
T Consensus 53 ~kCi~cGk~a~~ 64 (74)
T d1hc7a3 53 GFCVRCGRPSAY 64 (74)
T ss_dssp CBCTTTCCBCCT
T ss_pred CeeeecCCcccc
Confidence 579999999985
No 5
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.87 E-value=42 Score=21.32 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=20.0
Q ss_pred ccccCC-CCcCCCCCCCCcch---hHHHH
Q 021799 267 VCAVTG-LPAKNTMKRTTIAT---EEFIL 291 (307)
Q Consensus 267 ~C~iTg-~pA~Y~DP~T~l~y---~~y~~ 291 (307)
+|.|=. .+++|+.|.=+++| ..|+.
T Consensus 9 lC~vC~~~~~KY~CP~C~~~yCSL~CyK~ 37 (46)
T d1x4sa1 9 FCPAGEVQPARYTCPRCNAPYCSLRCYRT 37 (46)
T ss_dssp SSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred cChhhhCccccccCCCCCCceechHHHhh
Confidence 566654 68999999999999 56774
No 6
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.25 E-value=60 Score=19.23 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=13.3
Q ss_pred CCcCCCCCCCCcchh
Q 021799 273 LPAKNTMKRTTIATE 287 (307)
Q Consensus 273 ~pA~Y~DP~T~l~y~ 287 (307)
.||+|.+|--||.|.
T Consensus 5 kparf~c~pcgirfs 19 (36)
T d1y0jb1 5 KPARFMCLPCGIAFS 19 (36)
T ss_dssp SCCCCBCTTTCCBCS
T ss_pred cccceeccccceeec
Confidence 589999999999994
No 7
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.24 E-value=32 Score=19.90 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.4
Q ss_pred cccccCCCCcCCCCCCC
Q 021799 266 AVCAVTGLPAKNTMKRT 282 (307)
Q Consensus 266 ~~C~iTg~pA~Y~DP~T 282 (307)
-.|.|.|-.-+|.||.+
T Consensus 3 Y~Ck~~gC~K~YtdPSS 19 (29)
T d2glia5 3 YVCKLPGCTKRYTDPSS 19 (29)
T ss_dssp EECCSTTTCCEESSHHH
T ss_pred eecccCCCCcccCCHHH
Confidence 36999999999999853
No 8
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=8.32 E-value=41 Score=19.74 Aligned_cols=12 Identities=8% Similarity=-0.341 Sum_probs=9.6
Q ss_pred CCCCCCCcchhH
Q 021799 277 NTMKRTTIATEE 288 (307)
Q Consensus 277 Y~DP~T~l~y~~ 288 (307)
=.||.||--||.
T Consensus 3 R~DP~TG~iYH~ 14 (31)
T d1zaka2 3 RLDPVTGKIYHL 14 (31)
T ss_dssp EECTTTCCEEES
T ss_pred cCCCCCCcEeEE
Confidence 469999999863
No 9
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=7.63 E-value=1.8e+02 Score=20.75 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=25.5
Q ss_pred CeEEEEecC---------CceeeEEecCCcccccccCCCCCCCCCccccc-CCCC
Q 021799 230 PQLRYLSKD---------GYSYLEFSKGVSFQSELSTTSVPYPERAVCAV-TGLP 274 (307)
Q Consensus 230 P~ir~~S~~---------~~~~i~f~~~~~~~~~~~~~~~~~p~~~~C~i-Tg~p 274 (307)
|+.-||+.. ..-||.|.++..+...|.+ -.|.-.||+| +|.+
T Consensus 3 ~v~nWwdng~nqIAF~RG~kGFvAiN~~~~l~~t~qT---gLPaG~YCDVisG~~ 54 (93)
T d1jaea1 3 QVENWWSNDDNQIAFSRGSQGFVAFTNGGDLNQNLNT---GLPAGTYCDVISGEL 54 (93)
T ss_dssp CEEEEEECSSSEEEEEETTTEEEEEESSSCEEEEEEC---CCCSEEEECTTTCCE
T ss_pred cccccEECCCcEEEEecCCCcEEEEeCCcccceeEec---CCCCcceeEeeeccc
Confidence 677788764 2257777665554444443 5677789985 4433
No 10
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=7.19 E-value=51 Score=22.30 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=11.0
Q ss_pred cccccCCCCcCCC
Q 021799 266 AVCAVTGLPAKNT 278 (307)
Q Consensus 266 ~~C~iTg~pA~Y~ 278 (307)
..|.++|.||.+.
T Consensus 52 ~~Ci~cgk~a~~~ 64 (71)
T d1nj1a2 52 GTCINCGREAPYR 64 (71)
T ss_dssp CBCTTTCSBCCEE
T ss_pred CcceecCCccceE
Confidence 5799999999863
Done!