BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021800
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
           Atrial Natriuretic Peptide
 pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
           Atrial Natriuretic Peptide
          Length = 480

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 134 DSSTSHSLVKKLPALESSLTDNAKSAFGKRLISAGRRFQA 173
           D S   SL +  PA+E +L     +  G+RL+  G RFQ 
Sbjct: 62  DDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQV 101


>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
           Brain Natriuretic Peptide
 pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
           Brain Natriuretic Peptide
          Length = 479

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 134 DSSTSHSLVKKLPALESSLTDNAKSAFGKRLISAGRRFQA 173
           D S   SL +  PA+E +L     +  G+RL+  G RFQ 
Sbjct: 61  DDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQV 100


>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
 pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
 pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
          Length = 441

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 134 DSSTSHSLVKKLPALESSLTDNAKSAFGKRLISAGRRFQA 173
           D S   SL +  PA+E +L     +  G+RL+  G RFQ 
Sbjct: 19  DDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQV 58


>pdb|2FHZ|A Chain A, Molecular Basis Of Inhibition Of The Ribonuclease Activity
           In Colicin E5 By Its Cognate Immunity Protein
          Length = 109

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 80  SFDLPSDYLAQLPRDLRLDLNDAAFDLSNG 109
           ++D+P +Y +++P + RL + +   D+ NG
Sbjct: 70  TYDMPEEYKSKIPENNRLAIENIKDDIENG 99


>pdb|2DFX|I Chain I, Crystal Structure Of The Carboxy Terminal Domain Of
           Colicin E5 Complexed With Its Inhibitor
          Length = 106

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 80  SFDLPSDYLAQLPRDLRLDLNDAAFDLSNG 109
           ++D+P +Y +++P + RL + +   D+ NG
Sbjct: 67  TYDMPEEYKSKIPENNRLAIENIKDDIENG 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,108,011
Number of Sequences: 62578
Number of extensions: 249180
Number of successful extensions: 437
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 9
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)