BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021800
         (307 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2QMH2|RHD31_ORYSJ Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp.
           japonica GN=Os12g0604600 PE=2 SV=1
          Length = 854

 Score = 37.0 bits (84), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 13/109 (11%)

Query: 132 QADSSTSHSLVKKLPALESSLTDN-AKSAFGKRLISAGRRFQAMGQY----------GQG 180
           + +S+TS  +V KL     S+ +N AK   GK LI    RF  +  +          G+ 
Sbjct: 510 EMESATSEGMVSKLRDYARSIVENKAKEEAGKVLIHMKERFTTVFSHDKDSIPRVWTGKE 569

Query: 181 ELQKIAK-AMTAAGKLLSASSISTTIDEQPKKETRLLKFGELQVEVTPE 228
           +++ IAK A +AA KLLS  + +   DE+P K  ++L    L   VTP+
Sbjct: 570 DVRAIAKDARSAALKLLSVLA-AIRWDEKPDKIEKILTSTLLDGSVTPK 617


>sp|B0THS2|PNP_HELMI Polyribonucleotide nucleotidyltransferase OS=Heliobacterium
           modesticaldum (strain ATCC 51547 / Ice1) GN=pnp PE=3
           SV=1
          Length = 709

 Score = 35.0 bits (79), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 48  SKPLTVLFALTESDSPKSLQPDSQTLLQELADSFDLPSDYLAQLPRDLRLDLNDAAFDLS 107
            +P+  LF       PK  + D Q +   ++   D P D +  +     L L+D  F+  
Sbjct: 93  DRPIRPLF-------PKGFRNDVQVVATVMSVDQDCPPDIVGMIGASCALSLSDIPFEGP 145

Query: 108 NGPVVDECGQELGELLLNLTRAWEQADSSTSHSLV 142
            G V+   G+  G+LL+N T   EQA+ S  H +V
Sbjct: 146 IGGVL--VGRVDGKLLINPT--MEQAEKSDMHLVV 176


>sp|B0M0P8|GEFL_DICDI Ras guanine nucleotide exchange factor L OS=Dictyostelium discoideum
            GN=gefL PE=2 SV=1
          Length = 2356

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 128  RAWEQADSSTSHSLVKKLPALESSLTDN---AKSAFGKRLISAGRRFQA---MGQ-YGQG 180
            RA+   +++  + L  KLP+L SSL D+          R     +R QA   +GQ +G+ 
Sbjct: 2085 RAYAMPEAARPNQLTTKLPSLTSSLLDDELFVAQQLTLREYETFKRIQAVEFLGQAWGKP 2144

Query: 181  ELQ----KIAKAMTAAGKLLSASSISTTIDEQPKKETRL 215
            +LQ     + K +    K+  ++ +ST I  QPK +TR+
Sbjct: 2145 KLQYKAPNLLKMIERFNKI--STGVSTAILSQPKIKTRV 2181


>sp|P10730|ANPRC_BOVIN Atrial natriuretic peptide receptor 3 OS=Bos taurus GN=NPR3 PE=1
           SV=2
          Length = 537

 Score = 32.3 bits (72), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 134 DSSTSHSLVKKLPALESSLTDNAKSAFGKRLISAGRRFQ 172
           D S   SL +  PA+E +L     +A G+RL+ AG RFQ
Sbjct: 58  DDSYLFSLARVRPAIEYALRTVEGNATGRRLLPAGTRFQ 96


>sp|P39655|LOX12_MOUSE Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12
           PE=1 SV=4
          Length = 663

 Score = 31.6 bits (70), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 233 GAAIGFVFGILSWELGQGIQSTPESSLQYANDNALLLAKSLR 274
           G +   VF    W  G+GI S PE + + A DNAL + +  R
Sbjct: 87  GTSAEAVFPCYRWVQGEGILSLPEGTARLAGDNALDVFQKYR 128


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.129    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,844,254
Number of Sequences: 539616
Number of extensions: 3740200
Number of successful extensions: 9180
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9176
Number of HSP's gapped (non-prelim): 18
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)