Query 021800
Match_columns 307
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 05:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11282 DUF3082: Protein of u 97.9 2E-05 4.4E-10 62.5 5.7 78 225-302 2-80 (82)
2 COG1389 DNA topoisomerase VI, 72.9 2.6 5.7E-05 43.4 2.6 40 158-199 91-134 (538)
3 PF12304 BCLP: Beta-casein lik 56.6 15 0.00033 33.7 3.9 27 271-297 71-97 (188)
4 PRK10404 hypothetical protein; 52.3 9.7 0.00021 31.0 1.8 15 231-245 85-99 (101)
5 PF10456 BAR_3_WASP_bdg: WASP- 46.9 16 0.00034 33.7 2.5 40 99-139 60-102 (237)
6 PRK10132 hypothetical protein; 46.0 14 0.0003 30.6 1.8 15 231-245 91-105 (108)
7 COG4575 ElaB Uncharacterized c 39.8 18 0.0004 30.5 1.6 14 231-244 88-101 (104)
8 PF10883 DUF2681: Protein of u 39.8 20 0.00043 29.2 1.8 21 231-251 9-29 (87)
9 TIGR00066 g_glut_trans gamma-g 38.2 60 0.0013 32.5 5.2 106 161-276 184-292 (516)
10 PRK08154 anaerobic benzoate ca 36.5 59 0.0013 29.9 4.5 97 67-174 67-164 (309)
11 PF07219 HemY_N: HemY protein 33.5 31 0.00068 27.3 2.0 46 216-261 5-50 (108)
12 PF12732 YtxH: YtxH-like prote 30.4 36 0.00077 25.4 1.7 14 231-244 6-19 (74)
13 PF06295 DUF1043: Protein of u 29.2 40 0.00087 28.0 2.0 19 230-248 2-20 (128)
14 PLN02198 glutathione gamma-glu 28.8 1E+02 0.0023 31.5 5.2 65 177-244 222-287 (573)
15 PRK09615 ggt gamma-glutamyltra 27.0 1.1E+02 0.0025 31.4 5.1 64 179-244 245-309 (581)
16 PF14377 DUF4414: Domain of un 26.9 27 0.00059 28.0 0.6 15 85-99 47-61 (108)
17 PRK10747 putative protoheme IX 26.5 37 0.00081 31.7 1.5 48 214-261 28-75 (398)
18 PF13515 FUSC_2: Fusaric acid 23.9 64 0.0014 24.5 2.1 21 229-249 38-58 (128)
19 PF12185 IR1-M: Nup358/RanBP2 23.3 37 0.00081 26.7 0.7 18 75-92 15-32 (64)
20 KOG4112 Signal peptidase subun 22.8 50 0.0011 28.0 1.5 16 231-246 33-48 (101)
21 PF05957 DUF883: Bacterial pro 21.9 63 0.0014 24.9 1.8 14 231-244 78-91 (94)
22 PLN02365 2-oxoglutarate-depend 21.3 75 0.0016 29.2 2.4 27 72-98 127-154 (300)
23 PF10031 DUF2273: Small integr 20.8 68 0.0015 23.5 1.6 14 230-243 10-23 (51)
24 PF02404 SCF: Stem cell factor 20.5 33 0.00072 33.1 0.0 30 228-257 220-254 (273)
25 PF01337 Barstar: Barstar (bar 20.4 54 0.0012 24.6 1.1 20 69-89 10-29 (90)
26 TIGR02050 gshA_cyan_rel unchar 20.4 2.1E+02 0.0046 26.4 5.1 116 120-249 135-255 (287)
27 TIGR00840 b_cpa1 sodium/hydrog 20.3 2.4E+02 0.0053 28.8 5.9 23 231-253 212-234 (559)
28 PF04286 DUF445: Protein of un 20.0 66 0.0014 28.6 1.7 19 231-249 347-365 (367)
No 1
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=97.94 E-value=2e-05 Score=62.52 Aligned_cols=78 Identities=27% Similarity=0.298 Sum_probs=68.4
Q ss_pred eeccccchhhHHHHHHHHHHhhhccccc-CCCcccccccchhHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 021800 225 VTPEKAYIGAAIGFVFGILSWELGQGIQ-STPESSLQYANDNALLLAKSLRGALLAACYSSTLLSVCTVIGLFLYGRQL 302 (307)
Q Consensus 225 iT~~kA~iGAai~~vFGilSWqLaqGvQ-s~PesSlqYANDNAlllakSLrgaLLal~Ysst~LSa~t~vGL~lLa~ql 302 (307)
.||-++.+||+++.++++.+|++++.|. +.....+.|-|--|..++-.+|+...-+||--|+.=++.++||++++-|+
T Consensus 2 ~~Pl~~l~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~s~~~~a~~Ia~~vRTlv~Gl~~LaTfiF~~~~lGL~ll~iql 80 (82)
T PF11282_consen 2 PTPLRCLSGALIAGGLAYGLYFLTTSIAASFASKPIHSSNYIAQNIASAVRTLVVGLCYLATFIFGFVALGLFLLFIQL 80 (82)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999998763 34444455667778999999999999999999999999999999999885
No 2
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=72.94 E-value=2.6 Score=43.37 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=32.2
Q ss_pred hhhhhhhhhhcchh----hcccccccchHHHHHHHHHHcccccccc
Q 021800 158 SAFGKRLISAGRRF----QAMGQYGQGELQKIAKAMTAAGKLLSAS 199 (307)
Q Consensus 158 sAfGkRLvsAGrrF----qsmGQYgqGElqKIAkami~~Gk~ls~~ 199 (307)
-+|||-| +|-+| ||+||||-|----+-=+-+++||-+-..
T Consensus 91 kvFGk~L--ygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~ 134 (538)
T COG1389 91 KVFGKML--YGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVI 134 (538)
T ss_pred HHHHHHh--ccchhhhhhhccccccccHHHHHHHHHhcCCCceEEE
Confidence 4899988 56777 9999999997777777788999876543
No 3
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=56.62 E-value=15 Score=33.74 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=25.0
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHH
Q 021800 271 KSLRGALLAACYSSTLLSVCTVIGLFL 297 (307)
Q Consensus 271 kSLrgaLLal~Ysst~LSa~t~vGL~l 297 (307)
+.|+=+||++...+++||+..+|||++
T Consensus 71 ~~L~W~Ll~~S~ln~LlSaAc~vGL~~ 97 (188)
T PF12304_consen 71 RPLHWTLLVVSLLNALLSAACAVGLLL 97 (188)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999976
No 4
>PRK10404 hypothetical protein; Provisional
Probab=52.26 E-value=9.7 Score=31.04 Aligned_cols=15 Identities=47% Similarity=0.784 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHh
Q 021800 231 YIGAAIGFVFGILSW 245 (307)
Q Consensus 231 ~iGAai~~vFGilSW 245 (307)
-|+|+||||+|+|.+
T Consensus 85 GiaagvGlllG~Ll~ 99 (101)
T PRK10404 85 GVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHh
Confidence 489999999999864
No 5
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=46.95 E-value=16 Score=33.74 Aligned_cols=40 Identities=28% Similarity=0.503 Sum_probs=29.5
Q ss_pred ccccccccCC---CccchhhhHHHHHHHHHHHHHHHhhcccchH
Q 021800 99 LNDAAFDLSN---GPVVDECGQELGELLLNLTRAWEQADSSTSH 139 (307)
Q Consensus 99 lNDAAFdLSn---GPV~dECGqe~GelLlnLSrAWE~aDTsts~ 139 (307)
+++.+-+... ||...|| |.+|+-+.+||+|||...+..+.
T Consensus 60 l~~~~~~~~kk~~~~~kkE~-qkiG~af~~Ls~afe~d~~~~~~ 102 (237)
T PF10456_consen 60 LSSVANEFAKKHQGPFKKEY-QKIGQAFQSLSQAFELDQQQASM 102 (237)
T ss_dssp HHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHTTS--SSHC
T ss_pred HHHHHHHHHHHHhhhhHHHH-HHHHHHHhHHHHHHhcCCchhhh
Confidence 4555555554 9999998 78999999999999987755443
No 6
>PRK10132 hypothetical protein; Provisional
Probab=46.02 E-value=14 Score=30.61 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=12.7
Q ss_pred chhhHHHHHHHHHHh
Q 021800 231 YIGAAIGFVFGILSW 245 (307)
Q Consensus 231 ~iGAai~~vFGilSW 245 (307)
-|+|+||||+|+|.+
T Consensus 91 giaagvG~llG~Ll~ 105 (108)
T PRK10132 91 GTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHh
Confidence 489999999999854
No 7
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=18 Score=30.49 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=12.2
Q ss_pred chhhHHHHHHHHHH
Q 021800 231 YIGAAIGFVFGILS 244 (307)
Q Consensus 231 ~iGAai~~vFGilS 244 (307)
-|||+||++.|+|.
T Consensus 88 GvaAaVGlllGlLl 101 (104)
T COG4575 88 GVAAAVGLLLGLLL 101 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999874
No 8
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=39.76 E-value=20 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.562 Sum_probs=17.0
Q ss_pred chhhHHHHHHHHHHhhhcccc
Q 021800 231 YIGAAIGFVFGILSWELGQGI 251 (307)
Q Consensus 231 ~iGAai~~vFGilSWqLaqGv 251 (307)
-+|+++++++|.+.|++.+.=
T Consensus 9 ~~~~v~~~i~~y~~~k~~ka~ 29 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKKAK 29 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999987753
No 9
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=38.24 E-value=60 Score=32.47 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=62.9
Q ss_pred hhhhhhhcchhhcccccccchH-HHHHHHHHHccccccccccccccccccccccceecccceEEEeeccccchhhHHHHH
Q 021800 161 GKRLISAGRRFQAMGQYGQGEL-QKIAKAMTAAGKLLSASSISTTIDEQPKKETRLLKFGELQVEVTPEKAYIGAAIGFV 239 (307)
Q Consensus 161 GkRLvsAGrrFqsmGQYgqGEl-qKIAkami~~Gk~ls~~~~~~~~~~~~~~e~R~lKFGeLqveiT~~kA~iGAai~~v 239 (307)
=|++...|.. .-| +||+ ++|++.|-++|..++..+...-. -...++=..+|++.+|--+|--.-=|+++..+
T Consensus 184 L~~ia~~G~~----~FY-~G~iA~~iv~~~~~~GG~lt~~DL~~y~--~~~~~Pl~~~~~g~~v~~~ppP~sgg~~l~~~ 256 (516)
T TIGR00066 184 LELIAENGPD----AFY-KGDIAESIIDTLQKNGGIMTKKDLAAYD--VEIRKPLSGDYRGYQVYTTPPPSSGGIHLLQA 256 (516)
T ss_pred HHHHHHhCcc----ccc-CCHHHHHHHHHHHHcCCCCCHHHHhhCC--eEEeCCeEEEecCeEEEECCCCchHHHHHHHH
Confidence 3566666633 225 6887 77888888899999988775322 12233445678888998888655555667777
Q ss_pred HHHHHhhhcccccCCCcccccccc--hhHHHHHHHhHHH
Q 021800 240 FGILSWELGQGIQSTPESSLQYAN--DNALLLAKSLRGA 276 (307)
Q Consensus 240 FGilSWqLaqGvQs~PesSlqYAN--DNAlllakSLrga 276 (307)
..||-=. .+.+.+.++-+|-- -.|+.+|..-|..
T Consensus 257 L~ile~~---~~~~~~~~~~~~~h~l~ea~k~a~~~R~~ 292 (516)
T TIGR00066 257 LNILENF---DLSQYGDGSAETYQLLAEAMKLSYADRSR 292 (516)
T ss_pred HHhhhcc---CccccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7776531 23344444433322 1345555554543
No 10
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=36.47 E-value=59 Score=29.90 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=57.0
Q ss_pred CCChHHHHHHHhhccCCChhHHhhccccccccccccccccCCCccchhhhHHHHHHHHHHHHHHHhhcccchHHHhhhcc
Q 021800 67 QPDSQTLLQELADSFDLPSDYLAQLPRDLRLDLNDAAFDLSNGPVVDECGQELGELLLNLTRAWEQADSSTSHSLVKKLP 146 (307)
Q Consensus 67 ~p~~~~lLqelaDsl~LP~dy~~~LPrDLRlDlNDAAFdLSnGPV~dECGqe~GelLlnLSrAWE~aDTsts~sl~k~lp 146 (307)
.|+. ..|+.||+.|..+.+||-.-..+.--++. .-++ .+++|-++--+.+.++-++|-..- +-+.+.-.
T Consensus 67 ~ps~-~~l~~ia~~l~v~~~~l~~~~~~~~~~~~-~l~~-----~l~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~ 135 (309)
T PRK08154 67 NVSI-LLLRRVARALGCSLADLLGDVDTSSPDWL-LIRE-----LLEQASPAQLARVRDALSGMLGAG----RRAARRRR 135 (309)
T ss_pred CCCH-HHHHHHHHHhCCCHHHHhCCCCCCChHHH-HHHH-----HHhcCCHHHHHHHHHHHHHHHhhh----hhccCCCE
Confidence 4554 56889999999999999643322100000 0011 135566666666666666665432 44444444
Q ss_pred cccccccchhhhhhhhhhhhh-cchhhcc
Q 021800 147 ALESSLTDNAKSAFGKRLISA-GRRFQAM 174 (307)
Q Consensus 147 ~le~~Lt~~aksAfGkRLvsA-GrrFqsm 174 (307)
..---+.++.|+.+||.|... |..|-.+
T Consensus 136 I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 136 IALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 443344678999999999755 6655443
No 11
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.47 E-value=31 Score=27.26 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=39.2
Q ss_pred ecccceEEEeeccccchhhHHHHHHHHHHhhhcccccCCCcccccc
Q 021800 216 LKFGELQVEVTPEKAYIGAAIGFVFGILSWELGQGIQSTPESSLQY 261 (307)
Q Consensus 216 lKFGeLqveiT~~kA~iGAai~~vFGilSWqLaqGvQs~PesSlqY 261 (307)
+-||+..+|.|---+-+..+++++.-++.|.+...+-+.|...-.|
T Consensus 5 I~~~~~~ie~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 5 ISWGGYRIETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred EEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 5689999999998888888888888889999999999999866443
No 12
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=30.41 E-value=36 Score=25.38 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHH
Q 021800 231 YIGAAIGFVFGILS 244 (307)
Q Consensus 231 ~iGAai~~vFGilS 244 (307)
-+|++||.+.|+|.
T Consensus 6 l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 6 LAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHh
Confidence 47888888888884
No 13
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.20 E-value=40 Score=27.98 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=13.6
Q ss_pred cchhhHHHHHHHHHHhhhc
Q 021800 230 AYIGAAIGFVFGILSWELG 248 (307)
Q Consensus 230 A~iGAai~~vFGilSWqLa 248 (307)
|-||.+||+|+|++.--+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4588888988888754443
No 14
>PLN02198 glutathione gamma-glutamylcysteinyltransferase
Probab=28.85 E-value=1e+02 Score=31.52 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=45.8
Q ss_pred cccchH-HHHHHHHHHccccccccccccccccccccccceecccceEEEeeccccchhhHHHHHHHHHH
Q 021800 177 YGQGEL-QKIAKAMTAAGKLLSASSISTTIDEQPKKETRLLKFGELQVEVTPEKAYIGAAIGFVFGILS 244 (307)
Q Consensus 177 YgqGEl-qKIAkami~~Gk~ls~~~~~~~~~~~~~~e~R~lKFGeLqveiT~~kA~iGAai~~vFGilS 244 (307)
| +||+ ++|++.|-.+|-.++..+...-. -...++-..+|.+.+|--+|--.-=|+++..+..||-
T Consensus 222 Y-~G~iA~~iv~~~~~~GG~lt~~DL~~y~--~~~~~Pl~~~~~g~~v~~~ppPs~Gg~~l~~~L~iLe 287 (573)
T PLN02198 222 Y-NGTVGVNLVRDIQKSGGIITLKDLQSYR--VKVKEPLSADILGYRVLGMPPPSSGGAAMMLILNILA 287 (573)
T ss_pred c-CCHHHHHHHHHHHHcCCCCCHHHHhhCC--ceeeCCeEEEecCeEEEECCCCchHHHHHHHHHHHhh
Confidence 5 7887 67888888889999988775322 1233445667888888666655555566878888875
No 15
>PRK09615 ggt gamma-glutamyltranspeptidase; Reviewed
Probab=27.01 E-value=1.1e+02 Score=31.38 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=45.8
Q ss_pred cchH-HHHHHHHHHccccccccccccccccccccccceecccceEEEeeccccchhhHHHHHHHHHH
Q 021800 179 QGEL-QKIAKAMTAAGKLLSASSISTTIDEQPKKETRLLKFGELQVEVTPEKAYIGAAIGFVFGILS 244 (307)
Q Consensus 179 qGEl-qKIAkami~~Gk~ls~~~~~~~~~~~~~~e~R~lKFGeLqveiT~~kA~iGAai~~vFGilS 244 (307)
+||+ ++|++.|-++|..++..+...-. -...++=..+|++.+|--+|--.-=|+++..+..||-
T Consensus 245 ~G~iA~~iv~~~~~~GG~lt~~DLa~y~--~~~~~Pl~~~y~g~~v~~~pPPs~Gg~~l~~~L~iLe 309 (581)
T PRK09615 245 KGTIADQIAQEMQKNGGLITKEDLAAYK--AVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILE 309 (581)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHhhCC--ceeECCeEEEecCcEEEeCCCCchHHHHHHHHHHHhh
Confidence 6886 77999999999999988775322 1233445567888998888766655666777777774
No 16
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=26.90 E-value=27 Score=27.98 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=13.0
Q ss_pred hhHHhhccccccccc
Q 021800 85 SDYLAQLPRDLRLDL 99 (307)
Q Consensus 85 ~dy~~~LPrDLRlDl 99 (307)
|+||+.||.|+|-++
T Consensus 47 pefL~ALP~diR~EV 61 (108)
T PF14377_consen 47 PEFLAALPPDIREEV 61 (108)
T ss_pred HHHHHhCCHHHHHHH
Confidence 499999999999764
No 17
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=26.54 E-value=37 Score=31.72 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=40.2
Q ss_pred ceecccceEEEeeccccchhhHHHHHHHHHHhhhcccccCCCcccccc
Q 021800 214 RLLKFGELQVEVTPEKAYIGAAIGFVFGILSWELGQGIQSTPESSLQY 261 (307)
Q Consensus 214 R~lKFGeLqveiT~~kA~iGAai~~vFGilSWqLaqGvQs~PesSlqY 261 (307)
=.+-||+..||.|---+-|..++.++..++.|.+...+-++|...-.|
T Consensus 28 v~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 75 (398)
T PRK10747 28 VLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGW 75 (398)
T ss_pred EEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 357899999999998888887777777778899999999999876655
No 18
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=23.86 E-value=64 Score=24.50 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.6
Q ss_pred ccchhhHHHHHHHHHHhhhcc
Q 021800 229 KAYIGAAIGFVFGILSWELGQ 249 (307)
Q Consensus 229 kA~iGAai~~vFGilSWqLaq 249 (307)
+--+|.++|.++|++.|.+.+
T Consensus 38 ~Ri~Gt~iG~~~~~~~~~~~~ 58 (128)
T PF13515_consen 38 QRILGTLIGVVLGLLLLYLFP 58 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 346899999999999997765
No 19
>PF12185 IR1-M: Nup358/RanBP2 E3 ligase domain; InterPro: IPR022011 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The family is found in association with PF00638 from PFAM, PF00641 from PFAM, PF00160 from PFAM. There are two conserved sequence motifs: TFFC and EDF. Nup358/RanBP2 is a nucleoporin involved in ubiquitination of many different protein targets from various cellular pathways. It complexes with Ubc9, SUMO-1 and RanGAP1 to perform this function. This is the ligase domain which binds to Ubc9. ; PDB: 3UIO_D 3UIP_D 3UIN_D 1Z5S_D.
Probab=23.27 E-value=37 Score=26.73 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=13.4
Q ss_pred HHHhhccCCChhHHhhcc
Q 021800 75 QELADSFDLPSDYLAQLP 92 (307)
Q Consensus 75 qelaDsl~LP~dy~~~LP 92 (307)
.++|++|-|||.||--.-
T Consensus 15 ~a~A~~L~LPpTFfcy~~ 32 (64)
T PF12185_consen 15 KALAKKLQLPPTFFCYKN 32 (64)
T ss_dssp HHHHHHTT--TTGGGGGG
T ss_pred HHHHHhcCCCCcEEEeec
Confidence 489999999999997654
No 20
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.78 E-value=50 Score=28.00 Aligned_cols=16 Identities=38% Similarity=0.850 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHHHhh
Q 021800 231 YIGAAIGFVFGILSWE 246 (307)
Q Consensus 231 ~iGAai~~vFGilSWq 246 (307)
.|||+||+|+|+.-=|
T Consensus 33 ti~aiVg~i~Gf~~Qq 48 (101)
T KOG4112|consen 33 TIGAIVGFIYGFAQQQ 48 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999999996433
No 21
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.93 E-value=63 Score=24.89 Aligned_cols=14 Identities=43% Similarity=0.838 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHHH
Q 021800 231 YIGAAIGFVFGILS 244 (307)
Q Consensus 231 ~iGAai~~vFGilS 244 (307)
-|+++|||+.|+|.
T Consensus 78 giAagvG~llG~Ll 91 (94)
T PF05957_consen 78 GIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777888888764
No 22
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=21.32 E-value=75 Score=29.24 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=22.5
Q ss_pred HHHHHHhhccCC-ChhHHhhcccccccc
Q 021800 72 TLLQELADSFDL-PSDYLAQLPRDLRLD 98 (307)
Q Consensus 72 ~lLqelaDsl~L-P~dy~~~LPrDLRlD 98 (307)
.+|+-||.++.| |++||...+.-+|+-
T Consensus 127 ~ll~~la~~Lgl~~~~~f~~~~~~lr~~ 154 (300)
T PLN02365 127 DLARKLAESLGLVEGDFFQGWPSQFRIN 154 (300)
T ss_pred HHHHHHHHHcCCCChHHHhhcccceeee
Confidence 688889999999 899999877666653
No 23
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.79 E-value=68 Score=23.54 Aligned_cols=14 Identities=36% Similarity=0.804 Sum_probs=11.1
Q ss_pred cchhhHHHHHHHHH
Q 021800 230 AYIGAAIGFVFGIL 243 (307)
Q Consensus 230 A~iGAai~~vFGil 243 (307)
..||+++|+++|++
T Consensus 10 ~iiG~~~G~ila~l 23 (51)
T PF10031_consen 10 KIIGGLIGLILALL 23 (51)
T ss_pred hHHHHHHHHHHHHH
Confidence 46888888888875
No 24
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=20.53 E-value=33 Score=33.12 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHhhh-----cccccCCCcc
Q 021800 228 EKAYIGAAIGFVFGILSWEL-----GQGIQSTPES 257 (307)
Q Consensus 228 ~kA~iGAai~~vFGilSWqL-----aqGvQs~Pes 257 (307)
.-|..--+||||||.+.|.- .+++.|++-+
T Consensus 220 L~sl~SLVIGFvlG~l~WKkkq~~~~~~~eni~~~ 254 (273)
T PF02404_consen 220 LPSLFSLVIGFVLGALYWKKKQRSLTQEVENIQIN 254 (273)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 44555567999999999964 4555555443
No 25
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=20.42 E-value=54 Score=24.64 Aligned_cols=20 Identities=35% Similarity=0.848 Sum_probs=15.5
Q ss_pred ChHHHHHHHhhccCCChhHHh
Q 021800 69 DSQTLLQELADSFDLPSDYLA 89 (307)
Q Consensus 69 ~~~~lLqelaDsl~LP~dy~~ 89 (307)
+...++++++..|.+| +||.
T Consensus 10 ~~~~~~~~l~~~l~fP-~yfG 29 (90)
T PF01337_consen 10 DKEDFYDALAEALDFP-DYFG 29 (90)
T ss_dssp SHHHHHHHHHHHTT---TTSS
T ss_pred CHHHHHHHHHHHcCCC-chhc
Confidence 5678999999999999 7776
No 26
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=20.37 E-value=2.1e+02 Score=26.38 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhcccchHHHhhhcccccccccchhh--hhhhhhhhhhcchhhcccccccchHHHHHHHHHHcccccc
Q 021800 120 GELLLNLTRAWEQADSSTSHSLVKKLPALESSLTDNAK--SAFGKRLISAGRRFQAMGQYGQGELQKIAKAMTAAGKLLS 197 (307)
Q Consensus 120 GelLlnLSrAWE~aDTsts~sl~k~lp~le~~Lt~~ak--sAfGkRLvsAGrrFqsmGQYgqGElqKIAkami~~Gk~ls 197 (307)
.-.++|..+.|-= .--.|...=|.+++.-|+.+. ..+=+++-++|--+ .++.| .++.+..+.|+.+|-..+
T Consensus 135 ~i~~~n~l~~~lP----~llALsANSPf~~G~dtg~~s~R~~i~~~~p~~G~p~-~f~~~--~~y~~~~~~l~~~g~i~~ 207 (287)
T TIGR02050 135 AVAVLNRLLPWLP----HLLALSASSPFWQGFDTGYASYRRNIFQAWPTAGLPP-AFGSW--DAFEAYFADLLETGVIDD 207 (287)
T ss_pred HHHHHHHHHHHHH----HHHHHHhCCccccCcCCchHHHHHHHHHhCCCCCCCC-cCCCH--HHHHHHHHHHHHcCCcCC
Confidence 3466777777752 234455566888888886643 35556788888743 33333 589999999999997766
Q ss_pred ccccccccccccccccceecccceEEEeeccccchh---hHHHHHHHHHHhhhcc
Q 021800 198 ASSISTTIDEQPKKETRLLKFGELQVEVTPEKAYIG---AAIGFVFGILSWELGQ 249 (307)
Q Consensus 198 ~~~~~~~~~~~~~~e~R~lKFGeLqveiT~~kA~iG---Aai~~vFGilSWqLaq 249 (307)
.+.+- -++-|.. +||.+|+.|-.....+. +..|+|-|+.-|-+.+
T Consensus 208 ~~~iw--w~vRp~~-----~~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv~~~~~~ 255 (287)
T TIGR02050 208 DGDLW--WDIRPSP-----HFGTVEVRVADTCLNLEHAVAIAALIRALVEWLLRE 255 (287)
T ss_pred CCeeE--EEeccCC-----CCCCeeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44431 1334433 49999999987766554 4556777877776654
No 27
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=20.33 E-value=2.4e+02 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHhhhcccccC
Q 021800 231 YIGAAIGFVFGILSWELGQGIQS 253 (307)
Q Consensus 231 ~iGAai~~vFGilSWqLaqGvQs 253 (307)
-.|.+||+++|++...+.+-+.+
T Consensus 212 ~GGiliG~v~G~l~~~l~r~~~~ 234 (559)
T TIGR00840 212 CGGLLVGVVFGFLVAFITRFTHH 234 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35899999999999888765544
No 28
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=20.03 E-value=66 Score=28.57 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHHhhhcc
Q 021800 231 YIGAAIGFVFGILSWELGQ 249 (307)
Q Consensus 231 ~iGAai~~vFGilSWqLaq 249 (307)
+.||+||++.|++.+-+.+
T Consensus 347 inGallG~liG~~~~~i~~ 365 (367)
T PF04286_consen 347 INGALLGGLIGLLQYLILQ 365 (367)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4688888888887776543
Done!