Query 021800
Match_columns 307
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 09:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwg_A ESX-1 secretion-associa 36.0 21 0.00071 27.9 2.5 22 67-89 56-77 (123)
2 2js3_A Uncharacterized protein 30.3 18 0.00063 28.9 1.3 24 170-193 18-41 (96)
3 2l2n_A Hyponastic leave 1; DSR 28.3 12 0.00041 28.7 -0.1 68 56-124 5-82 (103)
4 3gnz_P 25 kDa protein elicitor 26.6 21 0.00071 31.5 1.2 37 88-131 176-212 (213)
5 1ekz_A DSRBDIII, maternal effe 25.0 35 0.0012 24.2 1.9 21 67-87 6-26 (76)
6 1bts_A BAND 3 anion transport 22.7 31 0.0011 21.7 1.1 13 234-246 11-23 (26)
7 3r1f_A ESX-1 secretion-associa 22.4 38 0.0013 26.6 1.8 22 67-89 58-79 (135)
8 2keg_A PLNK; protein, peptide, 22.1 41 0.0014 22.4 1.6 20 227-246 3-22 (32)
9 3st1_A Necrosis-and ethylene-i 19.7 38 0.0013 29.9 1.4 37 88-130 175-212 (214)
10 1kf6_D Fumarate reductase 13 k 19.0 1E+02 0.0034 25.6 3.7 39 230-275 26-64 (119)
No 1
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=35.99 E-value=21 Score=27.88 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=18.6
Q ss_pred CCChHHHHHHHhhccCCChhHHh
Q 021800 67 QPDSQTLLQELADSFDLPSDYLA 89 (307)
Q Consensus 67 ~p~~~~lLqelaDsl~LP~dy~~ 89 (307)
.|+. ..|+.||+.|..|+|||-
T Consensus 56 ~Ps~-~~l~~iA~~f~V~~~yl~ 77 (123)
T 3qwg_A 56 NPSG-ATMAALANFFRIKAAYFT 77 (123)
T ss_dssp CCCH-HHHHHHHHHTTSCTHHHH
T ss_pred CCCH-HHHHHHHHHhCCCHHHHc
Confidence 4554 678999999999999995
No 2
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=30.35 E-value=18 Score=28.94 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.2
Q ss_pred hhhcccccccchHHHHHHHHHHcc
Q 021800 170 RFQAMGQYGQGELQKIAKAMTAAG 193 (307)
Q Consensus 170 rFqsmGQYgqGElqKIAkami~~G 193 (307)
+||.|-.+..-|..|||-+++++.
T Consensus 18 yfqgM~~~a~EdvRkIA~ALvktA 41 (96)
T 2js3_A 18 YFQGMTDTAAEDVRKIATALLKTA 41 (96)
T ss_dssp TTBSTTTHHHHHHHHHHHHHHHTS
T ss_pred eeccccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999998763
No 3
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=28.26 E-value=12 Score=28.72 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=30.1
Q ss_pred ecccCCCCCCCCCChHHHHHHHhhccCCC-hhHHhhc---cc-c----ccccccccccccCCC-ccchhhhHHHHHHHH
Q 021800 56 ALTESDSPKSLQPDSQTLLQELADSFDLP-SDYLAQL---PR-D----LRLDLNDAAFDLSNG-PVVDECGQELGELLL 124 (307)
Q Consensus 56 altes~s~~s~~p~~~~lLqelaDsl~LP-~dy~~~L---Pr-D----LRlDlNDAAFdLSnG-PV~dECGqe~GelLl 124 (307)
.++|+.+.....-++++.|||++..-.+| |.| .-+ |. + .++-+|+--|.-..| +=.-+=-|...+..|
T Consensus 5 ~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y-~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL 82 (103)
T 2l2n_A 5 TSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVY-EIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVAL 82 (103)
T ss_dssp --------------CTTHHHHHHHHTTCCCCEE-EEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCCCHHHHHHHHHHHcCCCCCeE-EEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 35677777777789999999999887775 455 211 11 1 123345544544555 555555555554433
No 4
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=26.63 E-value=21 Score=31.53 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=32.8
Q ss_pred HhhccccccccccccccccCCCccchhhhHHHHHHHHHHHHHHH
Q 021800 88 LAQLPRDLRLDLNDAAFDLSNGPVVDECGQELGELLLNLTRAWE 131 (307)
Q Consensus 88 ~~~LPrDLRlDlNDAAFdLSnGPV~dECGqe~GelLlnLSrAWE 131 (307)
..+||...|--||++-|.-+|-|+.| - -.-||.+||-
T Consensus 176 Weql~~~aR~aL~~~dFG~A~vp~~D-n------F~~~L~~A~p 212 (213)
T 3gnz_P 176 WEQMTQAARDALESTDFGNANVPFKS-N------FQDKLVKAFF 212 (213)
T ss_dssp GGGSCHHHHHHHHHCCCTTCCCSSST-T------HHHHHHHHCC
T ss_pred cccCCHHHHHHhhhcCcCccCCChhH-H------HHHHHHHhcc
Confidence 47999999999999999999999999 5 5668889985
No 5
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=24.96 E-value=35 Score=24.17 Aligned_cols=21 Identities=5% Similarity=0.199 Sum_probs=17.9
Q ss_pred CCChHHHHHHHhhccCCChhH
Q 021800 67 QPDSQTLLQELADSFDLPSDY 87 (307)
Q Consensus 67 ~p~~~~lLqelaDsl~LP~dy 87 (307)
..++++.|||++..-.+||.|
T Consensus 6 ~~d~ks~LqE~~q~~~~~p~Y 26 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMTVHF 26 (76)
T ss_dssp CSCHHHHHHHHHHHTTCCCEE
T ss_pred CCCHHHHHHHHHHHcCCCCEE
Confidence 458999999999888888776
No 6
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=22.72 E-value=31 Score=21.71 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHhh
Q 021800 234 AAIGFVFGILSWE 246 (307)
Q Consensus 234 Aai~~vFGilSWq 246 (307)
+.-|++|++++||
T Consensus 11 ai~Gi~f~lf~gQ 23 (26)
T 1bts_A 11 AVQGILFALLGAX 23 (26)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcc
Confidence 4557899999998
No 7
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=22.35 E-value=38 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=18.4
Q ss_pred CCChHHHHHHHhhccCCChhHHh
Q 021800 67 QPDSQTLLQELADSFDLPSDYLA 89 (307)
Q Consensus 67 ~p~~~~lLqelaDsl~LP~dy~~ 89 (307)
.|+. ..|+.||+.|..|+|||-
T Consensus 58 ~Ps~-~~l~~iA~~f~V~~~yl~ 79 (135)
T 3r1f_A 58 NPSG-ATMAALANFFRIKAAYFT 79 (135)
T ss_dssp CCCH-HHHHHHHHHHTSCTHHHH
T ss_pred CCCH-HHHHHHHHHhCCCHHHHc
Confidence 4544 678899999999999995
No 8
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=22.10 E-value=41 Score=22.39 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=15.7
Q ss_pred ccccchhhHHHHHHHHHHhh
Q 021800 227 PEKAYIGAAIGFVFGILSWE 246 (307)
Q Consensus 227 ~~kA~iGAai~~vFGilSWq 246 (307)
..|.-||-|||..||-.--.
T Consensus 3 srkngigyaigyafgavera 22 (32)
T 2keg_A 3 SRKNGIGYAIGYAFGAVERA 22 (32)
T ss_dssp SSSSSSHHHHHHHHHHHHHH
T ss_pred ccccCcceeehhhhhHHHHH
Confidence 35778999999999976443
No 9
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=19.73 E-value=38 Score=29.87 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=32.9
Q ss_pred Hhhccccccccc-cccccccCCCccchhhhHHHHHHHHHHHHHH
Q 021800 88 LAQLPRDLRLDL-NDAAFDLSNGPVVDECGQELGELLLNLTRAW 130 (307)
Q Consensus 88 ~~~LPrDLRlDl-NDAAFdLSnGPV~dECGqe~GelLlnLSrAW 130 (307)
..+||...|--| |++-|.-.+=|+.|.- ..-||.+||
T Consensus 175 Weql~~~aR~aL~~~~dFG~A~vp~~D~n------F~~~L~~A~ 212 (214)
T 3st1_A 175 WEGMGADARAAINERSHWGDANPPIADSL------IGSSLSGAW 212 (214)
T ss_dssp TTTSCHHHHHHHHCGGGSTTCCCTTSTTT------HHHHHHHHC
T ss_pred cccCCHHHHHHhcccCCccccCCCcchHH------HHHHHHHhc
Confidence 488999999999 9999999999999986 667888888
No 10
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=19.02 E-value=1e+02 Score=25.65 Aligned_cols=39 Identities=36% Similarity=0.590 Sum_probs=27.3
Q ss_pred cchhhHHHHHHHHHHhhhcccccCCCcccccccchhHHHHHHHhHH
Q 021800 230 AYIGAAIGFVFGILSWELGQGIQSTPESSLQYANDNALLLAKSLRG 275 (307)
Q Consensus 230 A~iGAai~~vFGilSWqLaqGvQs~PesSlqYANDNAlllakSLrg 275 (307)
|-++.++=+++||+ +--|+ +|...+.|.+ .+-.|+|.-|
T Consensus 26 Al~~PvliLl~Gil---lPlG~--~~~~~lsY~~--~~aFa~s~ig 64 (119)
T 1kf6_D 26 AIIAPVMILLVGIL---LPLGL--FPGDALSYER--VLAFAQSFIG 64 (119)
T ss_dssp HHTHHHHHHHHHTT---GGGTC--SSTTTTSHHH--HHHHHTSHHH
T ss_pred HHHHHHHHHHHHHH---hcccC--CCcccccHHH--HHHHHhcHHH
Confidence 56777888889988 67888 7878888864 4444555433
Done!