Query 021800
Match_columns 307
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 09:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u2ca2 d.272.1.1 (A:179-303) 33.5 6.2 0.00045 30.7 1.1 31 72-107 29-59 (125)
2 d2imha1 d.153.1.7 (A:1-229) Hy 32.3 10 0.00075 31.5 2.3 42 91-151 174-216 (229)
3 d2cpna1 d.50.1.1 (A:150-225) T 30.6 11 0.0008 25.2 1.8 26 62-87 3-29 (76)
4 d1jb0m_ f.23.19.1 (M:) Subunit 27.4 11 0.00078 23.6 1.2 25 225-249 3-27 (31)
5 d1qu6a2 d.50.1.1 (A:91-179) ds 22.8 18 0.0013 25.0 1.9 65 58-122 4-75 (89)
6 d2i9fa1 d.254.1.1 (A:50-105) A 19.2 15 0.0011 25.3 0.6 10 92-101 2-11 (56)
7 d1xhca3 d.87.1.1 (A:290-351) N 18.7 21 0.0015 25.2 1.4 13 214-226 11-23 (62)
8 d1r69a_ a.35.1.2 (A:) 434 C1 r 17.5 28 0.0021 21.8 1.8 17 73-89 44-60 (63)
9 g2dg5.1 d.153.1.6 (A:37-387,B: 16.4 67 0.0049 28.2 4.6 63 179-243 208-271 (541)
10 d2qf3a1 b.47.1.1 (A:43-252) St 15.9 5.9 0.00043 30.0 -2.4 15 106-120 158-172 (210)
No 1
>d1u2ca2 d.272.1.1 (A:179-303) Dystroglycan, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.53 E-value=6.2 Score=30.70 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCChhHHhhccccccccccccccccC
Q 021800 72 TLLQELADSFDLPSDYLAQLPRDLRLDLNDAAFDLS 107 (307)
Q Consensus 72 ~lLqelaDsl~LP~dy~~~LPrDLRlDlNDAAFdLS 107 (307)
.++..+|+-+++|++.|.-.|- +||..||.|
T Consensus 29 ~ll~~lA~f~~l~~~~~~L~P~-----~n~~l~D~s 59 (125)
T d1u2ca2 29 DLLNRMQSFSEVELHNMKLVPV-----VNNRLFDMS 59 (125)
T ss_dssp HHHHHHHHHHCSCGGGCEEEEC-----CTTCCCCTT
T ss_pred HHHHHHHHHhCCCHHHeEeccc-----cCcccccch
Confidence 7899999999999999999994 699999987
No 2
>d2imha1 d.153.1.7 (A:1-229) Hypothetical protein SPO2555 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=32.29 E-value=10 Score=31.50 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=31.0
Q ss_pred cccccccccc-ccccccCCCccchhhhHHHHHHHHHHHHHHHhhcccchHHHhhhccccccc
Q 021800 91 LPRDLRLDLN-DAAFDLSNGPVVDECGQELGELLLNLTRAWEQADSSTSHSLVKKLPALESS 151 (307)
Q Consensus 91 LPrDLRlDlN-DAAFdLSnGPV~dECGqe~GelLlnLSrAWE~aDTsts~sl~k~lp~le~~ 151 (307)
-|-|||+|-+ |. =+-.|.|.||+....--.....++|.+..+
T Consensus 174 p~vDLRVD~~~d~-------------------Pi~eL~~l~~~~~~~~y~~~~~~~P~~~~~ 216 (229)
T d2imha1 174 PPVTLRIDYHPDN-------------------PIGALEQLYQKATTGDYADWARQVPVLSDK 216 (229)
T ss_dssp EEEEEEECCCSSC-------------------HHHHHHHHHHHHTSHHHHHHHTTSCBTTBT
T ss_pred CceEEEEeCCCCC-------------------hHHHHHHHHHHHhHHHHHHHHHhCCCcCCc
Confidence 3679999987 51 345678889987666667788889988664
No 3
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.60 E-value=11 Score=25.19 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=20.4
Q ss_pred CCCCCCCChHHHHHHHhhccCCC-hhH
Q 021800 62 SPKSLQPDSQTLLQELADSFDLP-SDY 87 (307)
Q Consensus 62 s~~s~~p~~~~lLqelaDsl~LP-~dy 87 (307)
+|+..+-+|+..|||++....+| |.|
T Consensus 3 ~~~~~~~npks~LqE~~q~~~~~~P~Y 29 (76)
T d2cpna1 3 SPQQSECNPVGALQELVVQKGWRLPEY 29 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCCCCEE
T ss_pred CCccCCCCHHHHHHHHHHHcCCCCCEE
Confidence 45556778999999999888777 455
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=27.41 E-value=11 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=20.7
Q ss_pred eeccccchhhHHHHHHHHHHhhhcc
Q 021800 225 VTPEKAYIGAAIGFVFGILSWELGQ 249 (307)
Q Consensus 225 iT~~kA~iGAai~~vFGilSWqLaq 249 (307)
++..+-++.-+|+++=||+-|.|+.
T Consensus 3 lsdtqv~valvial~pg~lafrlat 27 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLST 27 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999999875
No 5
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.83 E-value=18 Score=24.99 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred ccCCCCCCCCCChHHHHHHHhhccCCChhHHhh--cccc-----ccccccccccccCCCccchhhhHHHHHH
Q 021800 58 TESDSPKSLQPDSQTLLQELADSFDLPSDYLAQ--LPRD-----LRLDLNDAAFDLSNGPVVDECGQELGEL 122 (307)
Q Consensus 58 tes~s~~s~~p~~~~lLqelaDsl~LP~dy~~~--LPrD-----LRlDlNDAAFdLSnGPV~dECGqe~Gel 122 (307)
|++.+.....-++..+|||++..--++++|--. =|.+ .++-+|+--|.-..|+=..+.-|+..+.
T Consensus 4 ~~~~~~~~~~~n~~s~L~E~~Qk~~~~~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~ 75 (89)
T d1qu6a2 4 TTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 75 (89)
T ss_dssp CSCSSCCCCCCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHH
T ss_pred cccCCcCccccCHHHHHHHHHHhcCCCcceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHH
Confidence 566666666778999999999988888876311 1111 1233455555455555555555555543
No 6
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=19.19 E-value=15 Score=25.26 Aligned_cols=10 Identities=70% Similarity=1.049 Sum_probs=8.7
Q ss_pred cccccccccc
Q 021800 92 PRDLRLDLND 101 (307)
Q Consensus 92 PrDLRlDlND 101 (307)
|.|||-|||.
T Consensus 2 pgdlrhdlnq 11 (56)
T d2i9fa1 2 PGDLRHDLNQ 11 (56)
T ss_dssp CSSGGGGCCH
T ss_pred CccccchhhH
Confidence 8899999984
No 7
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=18.68 E-value=21 Score=25.17 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=11.2
Q ss_pred ceecccceEEEee
Q 021800 214 RLLKFGELQVEVT 226 (307)
Q Consensus 214 R~lKFGeLqveiT 226 (307)
-.||||+++|+|-
T Consensus 11 s~FKfgd~~iAii 23 (62)
T d1xhca3 11 TVFKFGKLQIAII 23 (62)
T ss_dssp EEEEETTEEEEEE
T ss_pred eeeeeCCccEEEE
Confidence 3699999999984
No 8
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=17.53 E-value=28 Score=21.76 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=14.7
Q ss_pred HHHHHhhccCCChhHHh
Q 021800 73 LLQELADSFDLPSDYLA 89 (307)
Q Consensus 73 lLqelaDsl~LP~dy~~ 89 (307)
.|..||+.|..|++||-
T Consensus 44 ~l~~ia~~l~v~~~~l~ 60 (63)
T d1r69a_ 44 FLPELASALGVSVDWLL 60 (63)
T ss_dssp THHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCcCHHHHh
Confidence 46789999999999983
No 9
>g2dg5.1 d.153.1.6 (A:37-387,B:391-580) Gamma-glutamyltranspeptidase, GGT {Escherichia coli [TaxId: 562]}
Probab=16.36 E-value=67 Score=28.15 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=45.7
Q ss_pred cchH-HHHHHHHHHccccccccccccccccccccccceecccceEEEeeccccchhhHHHHHHHHH
Q 021800 179 QGEL-QKIAKAMTAAGKLLSASSISTTIDEQPKKETRLLKFGELQVEVTPEKAYIGAAIGFVFGIL 243 (307)
Q Consensus 179 qGEl-qKIAkami~~Gk~ls~~~~~~~~~~~~~~e~R~lKFGeLqveiT~~kA~iGAai~~vFGil 243 (307)
+||+ ++|.+.|-+.|..++..+...- +-...++=..+|++.+|--+|--.-=|.++..+..||
T Consensus 208 ~G~iA~~iv~~~~~~GG~lt~~Dl~~y--~~~~~~Pl~~~y~~~~i~~~ppP~sGg~~ll~~L~il 271 (541)
T g2dg5.1 208 KGTIAEQIAQEMQKNGGLITKEDLAAY--KAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNIL 271 (541)
T ss_dssp TSHHHHHHHHHHHHTTCCCCHHHHHHC--CCEEECCEEEEETTEEEEECCTTBSHHHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHcCCCcchhhHhhc--cCccccceEEecCCCEEEECCCCccHHHHHHHHHHHh
Confidence 4776 7899999999999998877522 2234556678899999998876665566666566654
No 10
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=15.87 E-value=5.9 Score=29.98 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=12.3
Q ss_pred cCCCccchhhhHHHH
Q 021800 106 LSNGPVVDECGQELG 120 (307)
Q Consensus 106 LSnGPV~dECGqe~G 120 (307)
-|-|||+|+.|+=+|
T Consensus 158 ~SGGPv~n~~G~vVG 172 (210)
T d2qf3a1 158 NSGGALVNSLGELMG 172 (210)
T ss_dssp CTTCEEEETTCCEEE
T ss_pred cCCCceEeecCEEEE
Confidence 367899999998666
Done!