BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021802
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In
Complex With Cmp
Length = 341
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 155/243 (63%), Gaps = 9/243 (3%)
Query: 49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIM 108
++ VRV+ DGC+D +HYGH N LRQARA GD L+VGV +D EI +KGPPV ER
Sbjct: 5 RRAVRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKX 64
Query: 109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
V A+KWVDEV+ APY T + + D+YN D+ +HG+D + DG D YE K+AGRY
Sbjct: 65 VQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 120
Query: 169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSGGTRVSH 228
++ KRT+GVS+TD+VGR LL + S SS R+++ + R T VS
Sbjct: 121 RECKRTQGVSTTDLVGRXLLVTKAH--HSSQEXSSEYREYADSFGKCPGGRNP-WTGVSQ 177
Query: 229 FLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGD--FLLVGIHND 286
FL TS++I+QF++GK P P +IY+ GAFDLFH GHV+ L L + +++ G+H D
Sbjct: 178 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFD 237
Query: 287 QTV 289
Q V
Sbjct: 238 QEV 240
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 54 VYMDGCFDMMHYGHCNALRQARALGDQ--LVVGVVSDAEIIANKGP--PVTPLHERMIMV 109
+Y+ G FD+ H GH + L + L ++ ++ G+ D E+ KG P+ LHER + V
Sbjct: 201 IYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIXNLHERTLSV 260
Query: 110 NAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLP--DGTDAYELAKKAGR 167
A ++V EV+ APYA+T + L + +D + HG ++P DG+D Y+ K+ G
Sbjct: 261 LACRYVSEVVIGAPYAVTAE----LLSHFKVDLVCHGKTE-IIPDRDGSDPYQEPKRRGI 315
Query: 168 YKQIKRTEGVSSTDIVGRML 187
++QI +++ IV R++
Sbjct: 316 FRQIDSGSNLTTDLIVQRII 335
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
pdb|3HL4|B Chain B, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
Length = 236
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 12/163 (7%)
Query: 49 KKPVRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLHERM 106
++PVRVY DG FD+ H GH AL QA+ L L+VGV SD KG V +ER
Sbjct: 74 ERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERY 133
Query: 107 IMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG 166
V ++VDEV+ +AP+ +T +F+ E+ ID++ H D P D Y+ K+AG
Sbjct: 134 DAVQHCRYVDEVVRNAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAG 189
Query: 167 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFS 209
+ +RTEG+S++DI+ R+ VR+ D + +LQR ++
Sbjct: 190 MFAPTQRTEGISTSDIITRI---VRD---YDVYARRNLQRGYT 226
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 252 IYIDGAFDLFHAGHVEILRIARGL--GDFLLVGIHNDQ 287
+Y DG FDLFH+GH L A+ L +L+VG+ +D+
Sbjct: 79 VYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDE 116
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
Length = 129
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
+V G FD++H+GH L +A+ LGD LVV + +D + + R +++ +
Sbjct: 3 KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62
Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
++VDEVI + + K + + D +NID + GD D ++ K +
Sbjct: 63 RYVDEVIPEKNWEQKK---QDIID-HNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112
Query: 173 RTEGVSSTDI 182
RTEG+S+T I
Sbjct: 113 RTEGISTTKI 122
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 256 GAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287
G FDL H GH+++L A+ LGD+L+V I D+
Sbjct: 8 GTFDLLHWGHIKLLERAKQLGDYLVVAISTDE 39
>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|B Chain B, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|C Chain C, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|D Chain D, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
Length = 132
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112
RV G +D++HYGH LR+AR +GD L+V + +D +R +M+ ++
Sbjct: 3 RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62
Query: 113 KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK 172
++VD VI + + +D ++K +++D + G D ++ K +K
Sbjct: 63 RYVDLVIPEKGWGQKEDDVEK----FDVDVFVMG------HDWEGEFDFLKDKCEVIYLK 112
Query: 173 RTEGVSSTDI 182
RTEG+S+T I
Sbjct: 113 RTEGISTTKI 122
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 256 GAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSF 298
G +DL H GH+E+LR AR +GD+L+V + D+ ++K+ +
Sbjct: 8 GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYY 50
>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
Length = 143
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111
+RV G FD++H GH + L++++ LGD+LVV V D+ N P+ + R+ +++
Sbjct: 3 IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62
Query: 112 VKWVDEVI 119
+K VD I
Sbjct: 63 LKVVDRAI 70
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 256 GAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290
G FD+ H GH+ L+ ++ LGD L+V + D T R
Sbjct: 9 GVFDILHLGHIHYLKESKKLGDELVVVVARDSTAR 43
>pdb|3PXU|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei Bound
To Dephospho-Coenzyme A
Length = 170
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111
V VY G FD + GH + +R+A ++ D LVVGV A+ A K P L ER+ + N
Sbjct: 7 VAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGV---ADSRAKK--PFFSLEERLKIANE 60
Query: 112 V 112
V
Sbjct: 61 V 61
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 244 GPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVS 297
GPG +Y G FD GH +++R A + D L+VG+ + R K P S
Sbjct: 1 GPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGVADS---RAKKPFFS 50
>pdb|3K9W|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei With
Hydrolyzed 3'-Dephospho Coenzyme A
Length = 187
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111
V VY G FD + GH + +R+A ++ D LVVGV A+ A K P L ER+ + N
Sbjct: 24 VAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGV---ADSRAKK--PFFSLEERLKIANE 77
Query: 112 V 112
V
Sbjct: 78 V 78
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 240 SNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSF 298
+ +GPG +Y G FD GH +++R A + D L+VG+ + R K P S
Sbjct: 14 AQTQGPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGVADS---RAKKPFFSL 68
>pdb|3ND5|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND6|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND7|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
Length = 171
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 58 GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE 117
G FD M GH N + ++ L D++++GV I +K TP ++ ++ A K +
Sbjct: 9 GSFDPMTNGHLNLIERSAKLFDEVIIGVF----INTSKQTLFTPEEKKYLIEEATKEMPN 64
Query: 118 V 118
V
Sbjct: 65 V 65
>pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|C Chain C, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|E Chain E, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|G Chain G, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
Length = 476
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 109 VNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRY 168
V AVK +DE++ ++ D M FD N PC+ P T Y
Sbjct: 280 VEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLAT----------AY 329
Query: 169 KQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQ 205
++ I G L +++SD +SS++
Sbjct: 330 STLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSME 366
>pdb|1VLH|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
Length = 173
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 58 GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVD 116
G FD + GH + +++A ++ D+LVV V + + + L ER ++ V +D
Sbjct: 19 GSFDPITLGHVDIIKRALSIFDELVVLVTENP-----RKKCMFTLEERKKLIEEVLSDLD 73
Query: 117 EVISDAPYAITKDFMKK 133
V D + + D++KK
Sbjct: 74 GVKVDVHHGLLVDYLKK 90
>pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
Length = 168
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 253 YIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR-LKNP 294
+I G F FH GH+E+++ D +++GI + Q L+NP
Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENP 46
>pdb|2GMW|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|2GMW|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|3ESQ|A Chain A, Crystal Structure Of Calcium-Bound D,D-Heptose
1.7-Bisphosphate Phosphatase From E. Coli
pdb|3ESR|A Chain A, Crystal Structure Of D,D-Heptose1.7-Bisphosphate
Phosphatase From E. Coli In Complex With Calcium And
Phosphate
pdb|3L1U|A Chain A, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1U|B Chain B, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1V|A Chain A, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate.
pdb|3L1V|B Chain B, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate
Length = 211
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 80 QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITK 128
Q V +++ G P+TP E NA WV ++D P AI K
Sbjct: 162 QAAVAANVGTKVLVRTGKPITPEAE-----NAADWVLNSLADLPQAIKK 205
>pdb|3L8E|A Chain A, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
pdb|3L8E|B Chain B, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
Length = 187
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 80 QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITK 128
Q V +++ G P+TP E NA WV ++D P AI K
Sbjct: 142 QAAVAANVGTKVLVRTGKPITPEAE-----NAADWVLNSLADLPQAIKK 185
>pdb|3L8F|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With Magnesium And
Phosphate
pdb|3L8G|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With
D-Glycero-D-Manno- Heptose 1 ,7-Bisphosphate
Length = 187
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 61 DMMHYGHCNALRQARALGD-QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVI 119
D +H + L D Q V +++ G P+TP E NA WV +
Sbjct: 122 DYLHIDXAASYXVGDKLEDXQAAVAANVGTKVLVRTGKPITPEAE-----NAADWVLNSL 176
Query: 120 SDAPYAITK 128
+D P AI K
Sbjct: 177 ADLPQAIKK 185
>pdb|1T8R|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8S|A Chain A, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|B Chain B, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|C Chain C, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|D Chain D, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|E Chain E, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|F Chain F, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8W|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8Y|A Chain A, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|B Chain B, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|C Chain C, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|D Chain D, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|E Chain E, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|F Chain F, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
Length = 484
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 66 GHCNALRQARALGDQLVV-GVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAP 123
GHC LR+++A+GD ++ + D ++ PP P+ + A+ +++S P
Sbjct: 304 GHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKLVSGRP 362
>pdb|2GUW|A Chain A, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|B Chain B, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|C Chain C, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
Length = 484
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 66 GHCNALRQARALGDQLVV-GVVSDAEIIANKGPPVTPL 102
GHC LR+++A+GD ++ + D ++ PP P+
Sbjct: 304 GHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPI 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,581,032
Number of Sequences: 62578
Number of extensions: 404959
Number of successful extensions: 895
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 26
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)