Query 021802
Match_columns 307
No_of_seqs 342 out of 2551
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2803 Choline phosphate cyti 100.0 1.5E-70 3.2E-75 511.5 18.6 244 47-299 4-249 (358)
2 PLN02406 ethanolamine-phosphat 100.0 3.5E-65 7.6E-70 498.8 26.0 283 8-294 4-296 (418)
3 PTZ00308 ethanolamine-phosphat 100.0 1.3E-56 2.8E-61 433.1 25.0 231 47-294 7-237 (353)
4 cd02174 CCT CTP:phosphocholine 100.0 2.7E-32 5.8E-37 235.3 17.8 137 51-191 2-140 (150)
5 PLN02413 choline-phosphate cyt 100.0 2.8E-32 6.1E-37 254.1 17.3 140 46-189 22-165 (294)
6 COG0615 TagD Cytidylyltransfer 100.0 1.9E-31 4.2E-36 226.2 12.9 131 52-188 2-139 (140)
7 PLN02406 ethanolamine-phosphat 100.0 2.1E-30 4.5E-35 254.2 17.2 145 40-188 240-389 (418)
8 cd02173 ECT CTP:phosphoethanol 100.0 5E-30 1.1E-34 221.6 17.4 134 52-189 3-140 (152)
9 KOG2804 Phosphorylcholine tran 100.0 4.4E-31 9.6E-36 245.9 10.8 139 47-189 59-199 (348)
10 PTZ00308 ethanolamine-phosphat 100.0 1.1E-28 2.4E-33 238.8 16.7 136 49-188 190-329 (353)
11 cd02170 cytidylyltransferase c 100.0 5.9E-28 1.3E-32 203.3 17.3 132 52-188 2-135 (136)
12 cd02172 RfaE_N N-terminal doma 100.0 5.1E-28 1.1E-32 207.0 16.7 131 52-188 5-141 (144)
13 TIGR02199 rfaE_dom_II rfaE bif 99.9 1.1E-26 2.4E-31 198.7 17.1 130 51-187 11-143 (144)
14 TIGR01518 g3p_cytidyltrns glyc 99.9 1E-26 2.2E-31 193.8 14.0 123 54-186 1-125 (125)
15 cd02171 G3P_Cytidylyltransfera 99.9 1.8E-25 4E-30 186.5 15.9 126 52-188 2-128 (129)
16 PRK07143 hypothetical protein; 99.9 1.2E-22 2.5E-27 191.4 16.9 139 48-189 12-162 (279)
17 cd02064 FAD_synthetase_N FAD s 99.9 1.2E-22 2.6E-27 179.4 15.1 134 54-189 2-158 (180)
18 PRK11316 bifunctional heptose 99.9 1.4E-22 3.1E-27 201.6 17.2 131 51-187 340-472 (473)
19 PRK05627 bifunctional riboflav 99.9 2.6E-22 5.7E-27 191.2 15.4 135 53-189 15-173 (305)
20 KOG2803 Choline phosphate cyti 99.9 4.4E-22 9.6E-27 186.8 10.4 144 40-188 187-332 (358)
21 PF06574 FAD_syn: FAD syntheta 99.9 1.5E-21 3.3E-26 169.6 9.3 130 50-181 4-157 (157)
22 TIGR00083 ribF riboflavin kina 99.8 2.1E-20 4.7E-25 176.8 15.2 134 54-189 1-156 (288)
23 COG2870 RfaE ADP-heptose synth 99.8 8.7E-20 1.9E-24 176.8 12.2 130 53-188 334-465 (467)
24 COG0196 RibF FAD synthase [Coe 99.8 1.4E-19 3E-24 172.0 12.4 137 51-189 15-173 (304)
25 cd02039 cytidylyltransferase_l 99.8 1.3E-18 2.9E-23 144.6 11.9 130 54-185 2-143 (143)
26 PRK00777 phosphopantetheine ad 99.7 8.9E-18 1.9E-22 145.4 7.6 132 52-189 2-145 (153)
27 smart00764 Citrate_ly_lig Citr 99.6 3.5E-15 7.7E-20 132.7 13.7 124 58-188 6-164 (182)
28 cd02169 Citrate_lyase_ligase C 99.6 8E-15 1.7E-19 139.5 15.8 131 51-189 114-280 (297)
29 TIGR01527 arch_NMN_Atrans nico 99.6 4.6E-15 9.9E-20 130.1 12.5 126 53-189 1-136 (165)
30 PRK00168 coaD phosphopantethei 99.6 1.7E-14 3.7E-19 125.3 14.6 126 52-189 2-138 (159)
31 cd02163 PPAT Phosphopantethein 99.6 2.3E-14 5.1E-19 123.7 11.8 124 54-189 2-136 (153)
32 PLN02388 phosphopantetheine ad 99.6 1.3E-14 2.8E-19 128.5 10.0 136 47-191 15-169 (177)
33 PRK01170 phosphopantetheine ad 99.6 2.4E-14 5.3E-19 137.2 11.5 127 53-189 2-142 (322)
34 PF01467 CTP_transf_2: Cytidyl 99.5 1.4E-14 3.1E-19 121.0 6.7 130 55-185 1-157 (157)
35 cd02166 NMNAT_Archaea Nicotina 99.5 2.4E-13 5.1E-18 118.7 13.6 126 53-188 1-137 (163)
36 TIGR00125 cyt_tran_rel cytidyl 99.5 6.7E-14 1.5E-18 103.1 7.2 65 53-117 1-65 (66)
37 cd02173 ECT CTP:phosphoethanol 99.5 2.3E-14 5.1E-19 124.0 5.5 47 248-294 1-47 (152)
38 TIGR01510 coaD_prev_kdtB pante 99.5 1.2E-12 2.6E-17 113.2 13.9 121 54-189 2-136 (155)
39 PLN02413 choline-phosphate cyt 99.4 1E-13 2.2E-18 130.0 6.1 54 245-299 23-78 (294)
40 cd02174 CCT CTP:phosphocholine 99.4 1E-13 2.2E-18 119.8 5.5 47 249-295 2-50 (150)
41 cd02164 PPAT_CoAS phosphopante 99.4 2.2E-13 4.9E-18 116.8 7.5 122 53-184 1-142 (143)
42 PRK00071 nadD nicotinic acid m 99.4 1E-11 2.2E-16 111.5 15.6 133 52-188 5-179 (203)
43 cd02165 NMNAT Nicotinamide/nic 99.4 7.8E-12 1.7E-16 111.2 14.4 132 54-189 2-171 (192)
44 COG1057 NadD Nicotinic acid mo 99.3 1.7E-11 3.8E-16 110.4 14.0 135 51-189 3-174 (197)
45 cd02168 NMNAT_Nudix Nicotinami 99.3 1.7E-11 3.7E-16 109.0 12.8 127 54-188 2-144 (181)
46 COG2870 RfaE ADP-heptose synth 99.3 1.1E-12 2.4E-17 127.8 4.4 50 249-298 332-385 (467)
47 PRK13964 coaD phosphopantethei 99.3 3E-11 6.6E-16 103.4 12.7 122 53-187 3-137 (140)
48 TIGR00482 nicotinate (nicotina 99.3 3.4E-11 7.4E-16 107.4 13.4 129 56-188 2-171 (193)
49 PRK01153 nicotinamide-nucleoti 99.3 5.4E-11 1.2E-15 105.1 14.0 125 53-188 2-138 (174)
50 COG0615 TagD Cytidylyltransfer 99.3 2.2E-12 4.8E-17 110.0 4.8 49 251-299 3-54 (140)
51 PRK08887 nicotinic acid mononu 99.3 1.1E-10 2.4E-15 103.0 14.1 130 53-188 4-148 (174)
52 cd02167 NMNAT_NadR Nicotinamid 99.3 5E-11 1.1E-15 103.7 11.6 126 54-187 2-147 (158)
53 PRK05379 bifunctional nicotina 99.3 9.3E-11 2E-15 113.5 14.6 132 50-189 5-150 (340)
54 PRK06973 nicotinic acid mononu 99.3 8.3E-11 1.8E-15 109.1 13.2 117 52-173 23-156 (243)
55 PRK07152 nadD putative nicotin 99.2 3.6E-10 7.8E-15 109.3 14.6 133 53-189 3-168 (342)
56 COG0669 CoaD Phosphopantethein 99.2 1.1E-10 2.3E-15 101.0 9.5 87 52-147 3-90 (159)
57 COG1019 Predicted nucleotidylt 99.2 1.9E-10 4.2E-15 98.9 9.6 127 50-185 4-145 (158)
58 PRK13670 hypothetical protein; 99.1 2.9E-10 6.3E-15 112.0 10.3 92 54-148 4-103 (388)
59 PRK08099 bifunctional DNA-bind 99.1 1.2E-09 2.6E-14 108.1 13.6 132 50-188 51-205 (399)
60 cd09286 NMNAT_Eukarya Nicotina 99.0 3.4E-09 7.5E-14 97.2 11.4 81 54-139 3-99 (225)
61 PRK13793 nicotinamide-nucleoti 99.0 3E-09 6.5E-14 95.8 10.3 58 53-112 6-63 (196)
62 PRK00777 phosphopantetheine ad 99.0 7.7E-10 1.7E-14 95.9 5.6 44 250-293 2-45 (153)
63 cd00560 PanC Pantoate-beta-ala 98.9 3.3E-09 7.2E-14 100.2 9.0 116 45-165 17-161 (277)
64 TIGR02199 rfaE_dom_II rfaE bif 98.9 1.1E-09 2.4E-14 93.7 4.9 47 248-294 10-56 (144)
65 TIGR00125 cyt_tran_rel cytidyl 98.9 1.3E-09 2.8E-14 80.1 4.5 44 251-294 1-44 (66)
66 cd02170 cytidylyltransferase c 98.9 1.4E-09 3E-14 91.4 5.1 45 249-293 1-45 (136)
67 PRK11316 bifunctional heptose 98.9 1.2E-09 2.6E-14 109.1 5.1 49 247-295 338-386 (473)
68 PRK13671 hypothetical protein; 98.9 9.9E-09 2.1E-13 97.9 10.4 90 55-149 4-103 (298)
69 PLN02945 nicotinamide-nucleoti 98.9 4.8E-08 1E-12 90.2 13.5 97 52-149 23-140 (236)
70 TIGR01518 g3p_cytidyltrns glyc 98.9 2.5E-09 5.5E-14 89.0 4.6 40 252-291 1-40 (125)
71 cd02156 nt_trans nucleotidyl t 98.8 6E-09 1.3E-13 84.0 5.7 57 54-112 2-58 (105)
72 cd02172 RfaE_N N-terminal doma 98.8 6.1E-09 1.3E-13 89.2 5.9 45 248-292 3-47 (144)
73 PRK00380 panC pantoate--beta-a 98.8 8.6E-09 1.9E-13 97.6 6.9 107 53-165 26-160 (281)
74 TIGR00124 cit_ly_ligase [citra 98.8 8.3E-08 1.8E-12 92.9 13.6 128 51-187 139-307 (332)
75 cd02171 G3P_Cytidylyltransfera 98.7 1.3E-08 2.8E-13 84.8 5.2 40 250-289 2-41 (129)
76 TIGR01526 nadR_NMN_Atrans nico 98.7 9.4E-08 2E-12 92.1 11.6 63 53-117 3-66 (325)
77 KOG2804 Phosphorylcholine tran 98.7 9.4E-09 2E-13 97.0 4.3 45 250-294 64-110 (348)
78 COG1019 Predicted nucleotidylt 98.5 8.5E-08 1.8E-12 82.7 4.4 51 249-299 5-57 (158)
79 PRK00168 coaD phosphopantethei 98.5 2.4E-07 5.2E-12 80.5 5.4 38 250-287 2-39 (159)
80 cd02164 PPAT_CoAS phosphopante 98.4 2.3E-07 5E-12 79.7 4.3 40 252-291 2-42 (143)
81 COG1056 NadR Nicotinamide mono 98.4 6.1E-07 1.3E-11 79.3 6.3 60 50-111 2-61 (172)
82 KOG3351 Predicted nucleotidylt 98.4 8.4E-07 1.8E-11 82.1 7.0 134 47-187 138-285 (293)
83 TIGR01527 arch_NMN_Atrans nico 98.4 5.5E-07 1.2E-11 79.2 5.3 37 252-288 2-38 (165)
84 PRK13964 coaD phosphopantethei 98.3 1.1E-06 2.3E-11 75.4 5.4 38 250-287 2-39 (140)
85 cd02039 cytidylyltransferase_l 98.2 1E-06 2.2E-11 72.9 4.3 40 251-290 1-41 (143)
86 PF01467 CTP_transf_2: Cytidyl 98.2 8.6E-07 1.9E-11 73.8 3.6 39 253-291 1-40 (157)
87 cd02156 nt_trans nucleotidyl t 98.1 2.3E-06 5E-11 68.9 4.2 39 252-290 2-40 (105)
88 cd02166 NMNAT_Archaea Nicotina 98.1 2.8E-06 6.1E-11 74.2 5.0 38 252-289 2-39 (163)
89 PLN02388 phosphopantetheine ad 98.1 3E-06 6.5E-11 75.4 5.0 46 245-290 15-61 (177)
90 TIGR00018 panC pantoate--beta- 98.1 1.7E-05 3.6E-10 75.4 9.2 72 45-120 17-92 (282)
91 TIGR01510 coaD_prev_kdtB pante 98.1 3.9E-06 8.5E-11 72.5 4.3 36 251-286 1-36 (155)
92 cd02163 PPAT Phosphopantethein 98.0 5.1E-06 1.1E-10 71.8 4.4 37 251-287 1-37 (153)
93 cd02167 NMNAT_NadR Nicotinamid 98.0 6.9E-06 1.5E-10 71.5 4.8 39 251-289 1-39 (158)
94 PLN02660 pantoate--beta-alanin 98.0 3.1E-05 6.7E-10 73.6 9.2 74 43-120 14-91 (284)
95 PF08218 Citrate_ly_lig: Citra 97.9 4.4E-05 9.5E-10 67.8 8.3 121 60-189 8-165 (182)
96 COG0669 CoaD Phosphopantethein 97.9 1.6E-05 3.4E-10 69.2 4.6 47 249-298 2-48 (159)
97 PRK05379 bifunctional nicotina 97.9 2.2E-05 4.7E-10 76.2 6.0 40 248-287 5-44 (340)
98 PF05636 HIGH_NTase1: HIGH Nuc 97.8 3.3E-05 7.1E-10 76.5 6.7 89 56-149 6-104 (388)
99 PRK13793 nicotinamide-nucleoti 97.7 6.9E-05 1.5E-09 67.7 5.5 39 250-288 5-43 (196)
100 PRK01153 nicotinamide-nucleoti 97.7 6.8E-05 1.5E-09 66.4 5.4 36 251-286 2-37 (174)
101 COG1323 Predicted nucleotidylt 97.6 0.00014 3E-09 71.2 7.5 87 58-149 8-104 (358)
102 TIGR00339 sopT ATP sulphurylas 97.5 0.0054 1.2E-07 60.8 16.3 94 52-150 184-290 (383)
103 KOG3351 Predicted nucleotidylt 97.4 0.00011 2.4E-09 68.2 3.6 49 243-291 136-185 (293)
104 TIGR00124 cit_ly_ligase [citra 97.4 0.00023 5E-09 69.1 5.3 39 247-285 137-175 (332)
105 PRK08099 bifunctional DNA-bind 97.4 0.0002 4.3E-09 71.1 4.9 40 248-287 51-90 (399)
106 PRK00071 nadD nicotinic acid m 97.3 0.00033 7.2E-09 62.9 5.5 39 249-287 4-44 (203)
107 COG1056 NadR Nicotinamide mono 97.1 0.00076 1.6E-08 59.8 5.2 42 248-289 2-43 (172)
108 PRK07143 hypothetical protein; 97.0 0.0011 2.4E-08 63.0 5.8 39 249-287 15-53 (279)
109 PRK05627 bifunctional riboflav 96.8 0.0011 2.4E-08 63.7 3.6 38 251-288 15-55 (305)
110 PRK08887 nicotinic acid mononu 96.7 0.0025 5.3E-08 56.3 4.9 36 249-285 2-37 (174)
111 COG3053 CitC Citrate lyase syn 96.4 0.039 8.4E-07 52.9 11.3 127 53-188 147-315 (352)
112 cd02169 Citrate_lyase_ligase C 96.3 0.0051 1.1E-07 58.9 5.0 38 248-285 113-150 (297)
113 PF02569 Pantoate_ligase: Pant 95.9 0.024 5.2E-07 54.0 7.1 76 42-120 14-92 (280)
114 PRK06973 nicotinic acid mononu 95.8 0.013 2.9E-07 54.5 5.0 38 249-286 22-61 (243)
115 PF01747 ATP-sulfurylase: ATP- 95.6 0.29 6.3E-06 45.0 12.7 105 40-151 10-127 (215)
116 cd00517 ATPS ATP-sulfurylase. 95.4 0.72 1.6E-05 45.4 15.6 94 52-150 157-263 (353)
117 COG1057 NadD Nicotinic acid mo 95.4 0.028 6E-07 50.9 5.4 39 248-286 2-42 (197)
118 PRK04149 sat sulfate adenylylt 95.2 0.99 2.1E-05 45.1 15.9 93 52-150 187-291 (391)
119 PLN02945 nicotinamide-nucleoti 95.0 0.024 5.3E-07 52.3 3.8 29 247-275 20-48 (236)
120 COG0414 PanC Panthothenate syn 94.8 0.19 4.2E-06 47.7 9.1 74 44-120 16-92 (285)
121 PRK13477 bifunctional pantoate 94.7 0.14 3E-06 52.7 8.7 67 53-120 21-90 (512)
122 PF06574 FAD_syn: FAD syntheta 94.6 0.042 9.1E-07 47.8 4.0 29 248-276 4-32 (157)
123 COG2046 MET3 ATP sulfurylase ( 94.0 1.3 2.9E-05 43.8 13.3 137 50-191 182-359 (397)
124 COG0414 PanC Panthothenate syn 92.3 0.092 2E-06 49.9 2.5 39 247-286 20-58 (285)
125 PF02569 Pantoate_ligase: Pant 91.7 0.14 3E-06 48.9 3.0 38 248-286 21-58 (280)
126 PRK05537 bifunctional sulfate 91.7 5.5 0.00012 41.6 14.9 94 52-150 187-291 (568)
127 KOG3042 Panthothenate syntheta 91.4 0.72 1.6E-05 42.7 7.1 61 59-120 31-94 (283)
128 PRK00380 panC pantoate--beta-a 90.5 0.38 8.1E-06 45.9 4.6 39 248-287 21-59 (281)
129 PLN02341 pfkB-type carbohydrat 89.6 0.074 1.6E-06 53.9 -1.0 44 231-276 398-441 (470)
130 PRK13477 bifunctional pantoate 88.9 0.35 7.6E-06 49.8 3.3 36 250-286 21-56 (512)
131 TIGR00018 panC pantoate--beta- 87.8 0.67 1.4E-05 44.3 4.2 37 248-287 21-59 (282)
132 cd00560 PanC Pantoate-beta-ala 87.6 0.69 1.5E-05 44.1 4.2 37 248-287 21-59 (277)
133 COG0159 TrpA Tryptophan syntha 86.6 8.2 0.00018 36.7 10.7 103 39-156 82-188 (265)
134 PLN02660 pantoate--beta-alanin 86.3 0.9 2E-05 43.5 4.2 37 248-287 20-58 (284)
135 COG0196 RibF FAD synthase [Coe 83.8 0.87 1.9E-05 44.0 2.8 27 249-275 15-41 (304)
136 KOG3042 Panthothenate syntheta 81.6 2.4 5.1E-05 39.3 4.6 39 248-287 23-61 (283)
137 PRK13111 trpA tryptophan synth 72.4 42 0.00092 31.5 10.4 90 39-144 77-170 (258)
138 PLN02591 tryptophan synthase 65.6 1.2E+02 0.0025 28.5 11.8 80 40-135 68-151 (250)
139 KOG3199 Nicotinamide mononucle 61.7 28 0.00061 32.2 6.6 71 49-120 6-81 (234)
140 TIGR00339 sopT ATP sulphurylas 55.7 15 0.00032 36.7 4.1 30 252-281 186-217 (383)
141 COG3053 CitC Citrate lyase syn 55.4 21 0.00045 34.8 4.8 41 246-286 142-182 (352)
142 PLN02341 pfkB-type carbohydrat 55.0 7.9 0.00017 39.3 2.1 29 50-78 413-441 (470)
143 PRK00536 speE spermidine synth 49.4 27 0.00058 33.0 4.6 97 41-146 63-169 (262)
144 TIGR00262 trpA tryptophan synt 49.1 2.3E+02 0.0049 26.5 11.7 89 41-145 77-171 (256)
145 PF00290 Trp_syntA: Tryptophan 41.0 59 0.0013 30.7 5.5 82 39-135 75-160 (259)
146 CHL00200 trpA tryptophan synth 39.8 3.3E+02 0.0071 25.7 11.2 81 40-136 81-165 (263)
147 PRK02615 thiamine-phosphate py 38.0 1.2E+02 0.0026 30.0 7.2 28 61-88 219-248 (347)
148 COG0352 ThiE Thiamine monophos 36.0 1.1E+02 0.0025 27.9 6.4 28 61-88 83-112 (211)
149 PRK05198 2-dehydro-3-deoxyphos 32.3 31 0.00068 32.8 2.1 58 59-116 187-261 (264)
150 PF14258 DUF4350: Domain of un 31.9 1.4E+02 0.0031 21.6 5.3 36 247-282 34-69 (70)
151 COG0421 SpeE Spermidine syntha 30.0 4.6E+02 0.0099 25.0 9.7 39 47-91 73-112 (282)
152 cd00953 KDG_aldolase KDG (2-ke 27.9 3.9E+02 0.0085 25.0 8.8 14 98-111 47-60 (279)
153 cd01715 ETF_alpha The electron 27.6 3.9E+02 0.0084 22.8 9.0 74 63-149 13-93 (168)
154 COG4231 Indolepyruvate ferredo 26.8 2.4E+02 0.0052 30.2 7.6 39 51-89 446-484 (640)
155 PRK12457 2-dehydro-3-deoxyphos 26.6 42 0.0009 32.3 1.9 61 59-119 195-272 (281)
156 TIGR00250 RNAse_H_YqgF RNAse H 25.9 2.6E+02 0.0055 23.4 6.4 58 129-188 38-104 (130)
157 COG0826 Collagenase and relate 25.5 6.1E+02 0.013 24.9 9.9 107 68-189 52-159 (347)
158 COG0329 DapA Dihydrodipicolina 25.5 3.8E+02 0.0083 25.5 8.3 25 136-160 96-120 (299)
159 PLN02428 lipoic acid synthase 25.1 3.2E+02 0.0069 27.0 7.8 50 101-150 260-325 (349)
160 PLN03033 2-dehydro-3-deoxyphos 24.6 42 0.0009 32.4 1.5 62 59-120 193-276 (290)
161 PF13651 EcoRI_methylase: Aden 24.4 1.1E+02 0.0023 30.2 4.3 44 102-149 126-169 (336)
162 cd00951 KDGDH 5-dehydro-4-deox 24.2 3.5E+02 0.0075 25.4 7.7 81 65-153 21-108 (289)
163 PRK08999 hypothetical protein; 22.9 2.1E+02 0.0045 26.9 6.0 14 137-150 244-257 (312)
164 TIGR01362 KDO8P_synth 3-deoxy- 22.7 45 0.00098 31.6 1.3 57 59-115 179-252 (258)
165 cd01985 ETF The electron trans 22.7 4.9E+02 0.011 22.3 8.9 75 63-150 17-102 (181)
166 PRK06512 thiamine-phosphate py 21.7 2.9E+02 0.0063 25.2 6.5 27 60-86 88-116 (221)
167 COG2355 Zn-dependent dipeptida 21.6 2.2E+02 0.0047 27.8 5.8 91 61-154 166-267 (313)
168 PRK03170 dihydrodipicolinate s 21.5 5.4E+02 0.012 23.9 8.4 81 66-153 23-110 (292)
169 TIGR01458 HAD-SF-IIA-hyp3 HAD- 21.4 6.4E+02 0.014 23.1 9.9 93 54-150 110-207 (257)
170 cd00950 DHDPS Dihydrodipicolin 20.5 5.4E+02 0.012 23.7 8.2 14 98-111 48-61 (284)
No 1
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-70 Score=511.48 Aligned_cols=244 Identities=57% Similarity=0.974 Sum_probs=219.5
Q ss_pred cCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI 126 (307)
Q Consensus 47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~ 126 (307)
.+.++.|||++||||++|+||+++|+|||++|++||||||+|++|..+||+|+|++|||++++++|||||||+.++||.+
T Consensus 4 ~~~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvt 83 (358)
T KOG2803|consen 4 KKNRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVT 83 (358)
T ss_pred cCCCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeec
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhhcCCccCcCCcchhhh
Q 021802 127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQR 206 (307)
Q Consensus 127 t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~ 206 (307)
+.+++ ++|+||+||||+|++..++|.|+|++.|++|++++++||+|||||+|++||++.++.++ .+++.......
T Consensus 84 t~~~m----d~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~ 158 (358)
T KOG2803|consen 84 TLEWM----DKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQREL 158 (358)
T ss_pred cHHHH----HHhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhh
Confidence 99998 57999999999999999999999999999999999999999999999999999999876 33222222223
Q ss_pred hhccCCCccccccccc-cccccccccccceehcccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802 207 QFSHGHNQKVEERGSG-GTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (307)
Q Consensus 207 ~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~ 285 (307)
.++.+.+ +...+ |+++++|+||+++|+||++|++|+|++++||++|+|||||+||+.+|++||.+||||||||++
T Consensus 159 ~~~~g~~----~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~ 234 (358)
T KOG2803|consen 159 SFSSGTD----DDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHT 234 (358)
T ss_pred hhccccC----CcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeec
Confidence 3333332 22233 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCc-ccc
Q 021802 286 DQTVRLKNPSV-SFI 299 (307)
Q Consensus 286 D~~v~~~~~~~-~~~ 299 (307)
|++++++++.+ |..
T Consensus 235 D~~vneykgs~~PiM 249 (358)
T KOG2803|consen 235 DQTVNEYKGSNYPIM 249 (358)
T ss_pred CcchhhhccCCCccc
Confidence 99999987764 544
No 2
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=3.5e-65 Score=498.81 Aligned_cols=283 Identities=83% Similarity=1.290 Sum_probs=247.6
Q ss_pred hhhhhHHHHHhhhHHHHHHHHHHHhhccCch---------hHHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcC
Q 021802 8 QSARILATCLIAGAVMVAGFSLLTLYLAAPN---------DRWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG 78 (307)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g 78 (307)
++++.+++|.+|++ ++++|+|++++.+.. ..+. ..+++.++.|||++||||++|.||+++|+||+++|
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG 80 (418)
T PLN02406 4 SSAKYVASCLIGGL--MLGASVLGLSLAGFGSSLPYAWPDLGIF-KKKKKKKPVRVYMDGCFDMMHYGHANALRQARALG 80 (418)
T ss_pred cccceeeehhhHHH--HHHHHHHHHHhccccccccccchhhhhh-ccccCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC
Confidence 56778899999999 899999999875321 1112 23456678899999999999999999999999999
Q ss_pred CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCch
Q 021802 79 DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDA 158 (307)
Q Consensus 79 d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~ 158 (307)
|+|+|||++|+++..+|++|++|++||++++++|+|||+|++++||.++++|+++++++++||++|||+||+..++|.|+
T Consensus 81 d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g~d~ 160 (418)
T PLN02406 81 DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDA 160 (418)
T ss_pred CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccCCchHH
Confidence 99999999999998899999999999999999999999999999999999999888889999999999999988899999
Q ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhhcCCccCcCCcchhhhhhccCCCccccccccc-cccccccccccceeh
Q 021802 159 YELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHNQKVEERGSG-GTRVSHFLPTSRRIV 237 (307)
Q Consensus 159 y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~i~ 237 (307)
|...+.+|++++++|++++|||+|++||++++++|+....++...++++|+.+... .+..+.. ++.+++|++|+++|+
T Consensus 161 y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~i~ 239 (418)
T PLN02406 161 YALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQ-FEDGGSGSGTRVSHFLPTSRRIV 239 (418)
T ss_pred HHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhcccccc-ccccCCCCCCCcccccccHHHHH
Confidence 99999999999999999999999999999999998754434444555566554332 1122222 567899999999999
Q ss_pred cccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802 238 QFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (307)
Q Consensus 238 ~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~ 294 (307)
||++|++|+|++++||++|+|||||+||+++|++|+++||+|||||++|+.++++|+
T Consensus 240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG 296 (418)
T PLN02406 240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRG 296 (418)
T ss_pred HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988765
No 3
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=1.3e-56 Score=433.09 Aligned_cols=231 Identities=50% Similarity=0.880 Sum_probs=205.1
Q ss_pred cCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI 126 (307)
Q Consensus 47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~ 126 (307)
..++.++||++||||++|.||+++|+||+++|++|+||+|+|+.+.+.|++|+++.+||++++++|+|||+|+++.||+.
T Consensus 7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~ 86 (353)
T PTZ00308 7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTT 86 (353)
T ss_pred CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCc
Confidence 34456899999999999999999999999999999999999999988888889999999999999999999999889987
Q ss_pred cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhhcCCccCcCCcchhhh
Q 021802 127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQR 206 (307)
Q Consensus 127 t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~~~~~~~~~~~~~~~~ 206 (307)
+.+|+ ++++||+||||+||+||.+|.++|+.++++|++++++|++++|||+|++||++++++++.... . .+
T Consensus 87 ~~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~-~-~~--- 157 (353)
T PTZ00308 87 RLEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV-D-EV--- 157 (353)
T ss_pred hHHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc-c-cc---
Confidence 77777 568999999999999999999999999999999999999999999999999999998653211 0 00
Q ss_pred hhccCCCccccccccccccccccccccceehcccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802 207 QFSHGHNQKVEERGSGGTRVSHFLPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (307)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D 286 (307)
++ ......|++.++|++|+++|+||+.+..|.+++++||++|+||+||.||+++|++|+++||+|||||++|
T Consensus 158 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD 229 (353)
T PTZ00308 158 QL--------ESSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHED 229 (353)
T ss_pred cc--------ccccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcch
Confidence 00 0111125667899999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccccCC
Q 021802 287 QTVRLKNP 294 (307)
Q Consensus 287 ~~v~~~~~ 294 (307)
+.++++|+
T Consensus 230 ~~v~~~Kg 237 (353)
T PTZ00308 230 QVVNEQKG 237 (353)
T ss_pred HHhHhhcC
Confidence 99988664
No 4
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=2.7e-32 Score=235.35 Aligned_cols=137 Identities=59% Similarity=1.032 Sum_probs=126.8
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccH
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITK 128 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~ 128 (307)
++|||+.|+||++|.||+++|++|+++| |+|+|||++|+.+..+|++|+++.+||.+++++|+|||+|+++.|+..+.
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~ 81 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP 81 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence 5689999999999999999999999999 99999999999988888889999999999999999999999988887777
Q ss_pred HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhhhh
Q 021802 129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLCVR 191 (307)
Q Consensus 129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~~~ 191 (307)
+|+ ++++||++++|+||..+..+.+.|+.+++.|++.++++++++|||.|++||+....
T Consensus 82 ~~i----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~ 140 (150)
T cd02174 82 EFL----DKYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYR 140 (150)
T ss_pred HHH----HHhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHH
Confidence 776 46899999999999887777788999999999999999999999999999987654
No 5
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=2.8e-32 Score=254.12 Aligned_cols=140 Identities=41% Similarity=0.728 Sum_probs=127.8
Q ss_pred hcCCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCC
Q 021802 46 RKKKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAP 123 (307)
Q Consensus 46 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~p 123 (307)
++..++++||++||||+||.||+++|+||++++ ++|||||++|+.+...||+|+|+++||+++|++|||||+|++++|
T Consensus 22 ~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP 101 (294)
T PLN02413 22 SPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAP 101 (294)
T ss_pred CCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCC
Confidence 456788899999999999999999999999996 799999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhcCccEEEEcCCCCcCC--CCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802 124 YAITKDFMKKLFDEYNIDYIIHGDDPCVLP--DGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC 189 (307)
Q Consensus 124 y~~t~dfle~ll~~l~~d~VV~GdD~~fg~--~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~ 189 (307)
|.++++|++ +++||++|||+++.... .+.|.|..++++|++..++|++++|||+|++||+..
T Consensus 102 ~~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~ 165 (294)
T PLN02413 102 WVITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKD 165 (294)
T ss_pred ccccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHH
Confidence 998889984 58999999998655332 456899999999999999999999999999999864
No 6
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.97 E-value=1.9e-31 Score=226.20 Aligned_cols=131 Identities=41% Similarity=0.724 Sum_probs=116.1
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhh-cCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIA-NKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF 130 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~-~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df 130 (307)
+|||++||||++|.||+++|+||+++||+|+|.+.+|+.+.. +|++|+|+++||++++++|||||+|++++||+++.++
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~ 81 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED 81 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence 469999999999999999999999999998888888776655 5669999999999999999999999999999987787
Q ss_pred HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCC------CCHHHHHHHHHh
Q 021802 131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEG------VSSTDIVGRMLL 188 (307)
Q Consensus 131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~------VSST~Ir~rIl~ 188 (307)
+ ++++||+|++|+|+. +..+.+.|+..+ .|.+..++|+++ +||++|.+|++.
T Consensus 82 i----~~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 82 I----EEYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred H----HHhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 7 468999999999999 556667777666 899999999987 899999998863
No 7
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.97 E-value=2.1e-30 Score=254.18 Aligned_cols=145 Identities=34% Similarity=0.645 Sum_probs=130.6
Q ss_pred HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccE
Q 021802 40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDE 117 (307)
Q Consensus 40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~ 117 (307)
+..++..+.+..++||++||||+||.||+++|++|+++||+|+|||++|+.+...|| +|+|+++||.+++++|+|||+
T Consensus 240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~ 319 (418)
T PLN02406 240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE 319 (418)
T ss_pred HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccE
Confidence 344444566677789999999999999999999999999999999999999988887 799999999999999999999
Q ss_pred EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCC---cCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPC---VLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~---fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
|++++||.+++++++ +++||++|||+|+. +..++.|.|...+++|+++++++++++|||+|++||+.
T Consensus 320 VVi~ap~~~~~~~i~----~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~ 389 (418)
T PLN02406 320 VIIGAPWEVSKDMIT----TFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVA 389 (418)
T ss_pred EEeCCCCCCCHHHHH----HhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHH
Confidence 999999998888874 68999999999763 33456799999999999999999999999999999985
No 8
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.97 E-value=5e-30 Score=221.64 Aligned_cols=134 Identities=41% Similarity=0.741 Sum_probs=121.6
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccHH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITKD 129 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~d 129 (307)
+.||+.|+||++|.||+++|++|+++||+|+|||++|+.+...|+ +|++|++||++++++|+|||+|++..|+.++.+
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~~ 82 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITKE 82 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchHH
Confidence 469999999999999999999999999999999999999887786 599999999999999999999999888877777
Q ss_pred HHHHHHHhcCccEEEEcCCCCcC--CCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802 130 FMKKLFDEYNIDYIIHGDDPCVL--PDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC 189 (307)
Q Consensus 130 fle~ll~~l~~d~VV~GdD~~fg--~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~ 189 (307)
|+ ++++||++++|+|+... ..+.+.|..++++|++..+++++++|||+|++||+..
T Consensus 83 ~~----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~ 140 (152)
T cd02173 83 LI----EHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKN 140 (152)
T ss_pred HH----HHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 76 46899999999999754 2466889999999999999999999999999999743
No 9
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=99.97 E-value=4.4e-31 Score=245.85 Aligned_cols=139 Identities=40% Similarity=0.672 Sum_probs=128.2
Q ss_pred cCCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCC
Q 021802 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPY 124 (307)
Q Consensus 47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py 124 (307)
+..+|+|||++|.||+||+||++.|+|||.++ -+|+|||.+|+..++.||..||+.+||++.|++|||||+|+.++||
T Consensus 59 p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW 138 (348)
T KOG2804|consen 59 PTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPW 138 (348)
T ss_pred CCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCc
Confidence 36789999999999999999999999999997 4699999999998999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802 125 AITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLLC 189 (307)
Q Consensus 125 ~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~~ 189 (307)
.+|++||+ ++++|+|.|-+-+....+..|.|..+|+.|+|...+||+||||++|+.||..-
T Consensus 139 ~lt~EFL~----~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrD 199 (348)
T KOG2804|consen 139 TLTPEFLE----KHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRD 199 (348)
T ss_pred cccHHHHH----hcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHh
Confidence 99999985 58999999987776655555899999999999999999999999999999753
No 10
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.96 E-value=1.1e-28 Score=238.81 Aligned_cols=136 Identities=35% Similarity=0.638 Sum_probs=124.7
Q ss_pred CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802 49 KKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAI 126 (307)
Q Consensus 49 ~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~ 126 (307)
...++||+.||||++|.||+++|++|+++||+|+|||++|+.+...|+ +|+|+++||++++++|+|||+|++.+|+.+
T Consensus 190 ~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~ 269 (353)
T PTZ00308 190 PGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDV 269 (353)
T ss_pred CCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCC
Confidence 345689999999999999999999999999999999999999988887 599999999999999999999999889887
Q ss_pred cHHHHHHHHHhcCccEEEEcCCCCc--CCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802 127 TKDFMKKLFDEYNIDYIIHGDDPCV--LPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 127 t~dfle~ll~~l~~d~VV~GdD~~f--g~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
+.+|+ ++++||++|+|+|+.. ..++.|+|...+.+|++..+++++++|||+|++||+.
T Consensus 270 ~~~~i----~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~ 329 (353)
T PTZ00308 270 TKEVI----DSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVK 329 (353)
T ss_pred hHHHH----HHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHH
Confidence 88887 4689999999999974 5556899999999999999999999999999999973
No 11
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.96 E-value=5.9e-28 Score=203.26 Aligned_cols=132 Identities=42% Similarity=0.673 Sum_probs=117.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM 131 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfl 131 (307)
++++++|+||++|.||++++++|++.+++++|++++|+.+.+.|++++++.+||++++++|+|||.+++..|+ +|+
T Consensus 2 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~----~~~ 77 (136)
T cd02170 2 KRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPW----SYF 77 (136)
T ss_pred eEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCC----CHh
Confidence 4799999999999999999999999999999999999877666667999999999999999999999987665 455
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcC--CCCCCCHHHHHHHHHh
Q 021802 132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIK--RTEGVSSTDIVGRMLL 188 (307)
Q Consensus 132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~--rt~~VSST~Ir~rIl~ 188 (307)
+.+ .+++++++|+|+|++||+++.+.|+.+++.|.+.++. ++++||||+||++|+.
T Consensus 78 ~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 78 KPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred HHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 543 4578999999999999998889999999999888888 7889999999999963
No 12
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.96 E-value=5.1e-28 Score=207.01 Aligned_cols=131 Identities=26% Similarity=0.360 Sum_probs=114.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM 131 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfl 131 (307)
..|+++|+||++|.||+++|++|+++++.++|++.+|+.+...+.+|++|.+||.+++++|+|||.+++ .|+..+++|+
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~-~~~~~~~~fi 83 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVL-FDNPTALEII 83 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEE-CCCCCHHHHH
Confidence 469999999999999999999999999999999999987765555799999999999999988999999 6776667887
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCC-----CchHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHh
Q 021802 132 KKLFDEYNIDYIIHGDDPCVLPDG-----TDAYELAKKA-GRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 132 e~ll~~l~~d~VV~GdD~~fg~~g-----~d~y~~lk~~-g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
+ ++++++||+|+||+||.++ .+.++.+++. +++... +++++|||+|++||+.
T Consensus 84 ~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~ 141 (144)
T cd02172 84 D----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFD 141 (144)
T ss_pred H----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHh
Confidence 4 5899999999999999875 5667777776 456666 9999999999999964
No 13
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.95 E-value=1.1e-26 Score=198.68 Aligned_cols=130 Identities=36% Similarity=0.545 Sum_probs=109.3
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccH
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITK 128 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~ 128 (307)
..+|+++|+||++|.||+++|++|++.++.++|++++|+.....|+ +|+++.+||.+++++|+|||++++..+. .++
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~~ 89 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TPE 89 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CHH
Confidence 3569999999999999999999999999999999999997654444 5899999999999999999999984332 346
Q ss_pred HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCCCCCCCHHHHHHHHH
Q 021802 129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRTEGVSSTDIVGRML 187 (307)
Q Consensus 129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~rt~~VSST~Ir~rIl 187 (307)
+|++ +++++++|+|+||+|.. ...++.+++ ++++.++++++++|||+||+||+
T Consensus 90 ~fi~----~l~~~~vv~G~d~~~~~--~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 90 ELIG----ELKPDILVKGGDYKVET--LVGAELVESYGGQVVLLPFVEGRSTTAIIEKIL 143 (144)
T ss_pred HHHH----HhCCCEEEECCCCCCCc--chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence 7774 68999999999999832 223455555 47999999999999999999995
No 14
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.94 E-value=1e-26 Score=193.78 Aligned_cols=123 Identities=29% Similarity=0.533 Sum_probs=102.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHHHH
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKK 133 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfle~ 133 (307)
|+++|+||++|.||+++|++|+++|++++|+|++|+.....+.+|+++.+||++++++|+|||+++...|+ ++|++.
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~---~~f~~~ 77 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSW---EQKKQD 77 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCc---cchHHH
Confidence 57899999999999999999999999999999999866544447899999999999999999999775554 356655
Q ss_pred HHHhcCccEEEEcCCCCcCCCCCchHHHHHhC--CEEEEcCCCCCCCHHHHHHHH
Q 021802 134 LFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA--GRYKQIKRTEGVSSTDIVGRM 186 (307)
Q Consensus 134 ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~--g~v~vv~rt~~VSST~Ir~rI 186 (307)
+ +++++|++++|+||. ++++.+++. +++.+++++++||||.||+.|
T Consensus 78 l-~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 78 I-IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred H-HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 4 689999999999993 234555543 577789999999999999864
No 15
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.93 E-value=1.8e-25 Score=186.50 Aligned_cols=126 Identities=33% Similarity=0.554 Sum_probs=106.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF 130 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df 130 (307)
++|+++|+||++|.||+.+|++|+++++++++++++|+.. ..++ ++++|.+||++++++|+|||+++...+| ++|
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~-~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f 77 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN-AGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK 77 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH-HhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence 4699999999999999999999999999999999988743 2333 6899999999999999899999753333 356
Q ss_pred HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802 131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
++.+ ++++++++++|+||. +.++.+++.+++.+++++.++|||.||++|..
T Consensus 78 ~~~~-~~l~~~~vv~G~d~~------g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 78 IEDI-KKYNVDVFVMGDDWE------GKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHH-HHhCCCEEEECCCCc------chHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 6554 679999999999983 35678888899999999999999999999853
No 16
>PRK07143 hypothetical protein; Provisional
Probab=99.90 E-value=1.2e-22 Score=191.36 Aligned_cols=139 Identities=15% Similarity=0.243 Sum_probs=115.9
Q ss_pred CCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCc-
Q 021802 48 KKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYA- 125 (307)
Q Consensus 48 ~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~- 125 (307)
......++++|+|||+|.||+++|++|++.++.++|...++|.....+. ++++|.+||.++++++ ++|.+++ .||+
T Consensus 12 ~~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~ 89 (279)
T PRK07143 12 FKFEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNE 89 (279)
T ss_pred CCCCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCH
Confidence 3344569999999999999999999999998887776666665322222 5799999999999999 9999999 8886
Q ss_pred -----ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC-EEEEcCC----CCCCCHHHHHHHHHhh
Q 021802 126 -----ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG-RYKQIKR----TEGVSSTDIVGRMLLC 189 (307)
Q Consensus 126 -----~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g-~v~vv~r----t~~VSST~Ir~rIl~~ 189 (307)
.+++|++.++. ++++.||+|+||+||+++.+.++.+++.+ .+.+++. ...||||.||+.|.++
T Consensus 90 ~~a~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G 162 (279)
T PRK07143 90 ELQNLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG 162 (279)
T ss_pred HHhCCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence 24789988764 99999999999999999998899999887 6777765 3579999999999754
No 17
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.89 E-value=1.2e-22 Score=179.35 Aligned_cols=134 Identities=22% Similarity=0.314 Sum_probs=106.3
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEeCChhhh--hcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCc
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGDQ-----LVVGVVSDAEII--ANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYA 125 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd~-----LiVgV~sD~~i~--~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~ 125 (307)
|+++|+||++|.||++++++|++++++ +++.+.+.+... ..+. .++++.++|+++++++ +||++++ .||+
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~vd~v~~-~~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL-GVDYLLV-LPFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-CCCEEEE-eCCC
Confidence 789999999999999999999999752 444444444322 2222 5899999999999999 6999999 7875
Q ss_pred ------ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh-----CCEEEEcCCC----CCCCHHHHHHHHHhh
Q 021802 126 ------ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK-----AGRYKQIKRT----EGVSSTDIVGRMLLC 189 (307)
Q Consensus 126 ------~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~-----~g~v~vv~rt----~~VSST~Ir~rIl~~ 189 (307)
..++|+++++.+.+++++|+|+||+||+++.++.+.+++ +.++.++++. +.||||.||+.|.+.
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G 158 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG 158 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence 246788887766699999999999999999877766654 3467777773 679999999999754
No 18
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.89 E-value=1.4e-22 Score=201.61 Aligned_cols=131 Identities=33% Similarity=0.495 Sum_probs=112.8
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccH
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITK 128 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~ 128 (307)
.++|++.|+||++|.||+++|++|++++++++|||++|+.+...|+ +|+++.+||.+++++|+|||++++. +...++
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~-~~~~~~ 418 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPF-EEDTPQ 418 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeC-CCCCHH
Confidence 4679999999999999999999999999999999999998876675 6899999999999999999999873 222345
Q ss_pred HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Q 021802 129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRML 187 (307)
Q Consensus 129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl 187 (307)
+|+ ++++||+|++|+||.+... .+.+...+.+|+++++++++++|||+|++||+
T Consensus 419 ~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~ 472 (473)
T PRK11316 419 RLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR 472 (473)
T ss_pred HHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence 565 5678999999999987532 34566677789999999999999999999996
No 19
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.89 E-value=2.6e-22 Score=191.17 Aligned_cols=135 Identities=25% Similarity=0.331 Sum_probs=109.0
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeE---EEEEeCC--hh-hh-hcCC-CCCCCHHHHHHHHHHccCccEEEEcCCC
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQL---VVGVVSD--AE-II-ANKG-PPVTPLHERMIMVNAVKWVDEVISDAPY 124 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~L---iVgV~sD--~~-i~-~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py 124 (307)
+|+++|+||++|.||+++|++|+++++++ .+.++.| |. +. ..+. +++++.+||.++++++ +||.+++ .||
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~-~~F 92 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLV-LPF 92 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEE-ecC
Confidence 79999999999999999999999998653 2234444 32 21 1223 6899999999999999 6999999 888
Q ss_pred c------ccHHHHHH-HHHhcCccEEEEcCCCCcCCCCCchHHHHHhC-----CEEEEcCC----CCCCCHHHHHHHHHh
Q 021802 125 A------ITKDFMKK-LFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA-----GRYKQIKR----TEGVSSTDIVGRMLL 188 (307)
Q Consensus 125 ~------~t~dfle~-ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~-----g~v~vv~r----t~~VSST~Ir~rIl~ 188 (307)
+ ..++|+++ +++++++++||+|+||+||+++.++++.+++. .++.+++. .+.||||.||+.|..
T Consensus 93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~ 172 (305)
T PRK05627 93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE 172 (305)
T ss_pred CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence 5 24789987 44569999999999999999999888888764 46777766 368999999999975
Q ss_pred h
Q 021802 189 C 189 (307)
Q Consensus 189 ~ 189 (307)
+
T Consensus 173 G 173 (305)
T PRK05627 173 G 173 (305)
T ss_pred C
Confidence 4
No 20
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.87 E-value=4.4e-22 Score=186.78 Aligned_cols=144 Identities=36% Similarity=0.633 Sum_probs=124.4
Q ss_pred HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccE
Q 021802 40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDE 117 (307)
Q Consensus 40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~ 117 (307)
++..+..+.+..+.||++|.||+||.||+..|+.|++++|+|+||+++|+.++..|+ .|||+..||...+.+||+||+
T Consensus 187 ~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVde 266 (358)
T KOG2803|consen 187 QFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDE 266 (358)
T ss_pred EeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccce
Confidence 345555666667789999999999999999999999999999999999999988888 599999999999999999999
Q ss_pred EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
|++++||..+.+|+ +.++++.|++|.-+.+ .+..+.|...+..+.+..+......++..|++||..
T Consensus 267 VvvGaP~~v~s~~i----~~~~~~~v~~g~~~~~-~~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis 332 (358)
T KOG2803|consen 267 VVVGAPYEVTSEFI----KLFNIDKVAHGTIPDF-RDPSDPYADPKRRGIFEEADSGSDLTTELIVERIIS 332 (358)
T ss_pred EEEcCchhccHHHH----HhcCceEEEEeccccc-cCccCccccchhhcchhhcCCcccccHHHHHHHHHH
Confidence 99999999888887 4689999999982222 234567888888888888777767999999999974
No 21
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.85 E-value=1.5e-21 Score=169.58 Aligned_cols=130 Identities=26% Similarity=0.403 Sum_probs=94.0
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEeCChhhhhc--CC-CCCCCHHHHHHHHHHccCccEEEEc
Q 021802 50 KPVRVYMDGCFDMMHYGHCNALRQARALGD-----QLVVGVVSDAEIIAN--KG-PPVTPLHERMIMVNAVKWVDEVISD 121 (307)
Q Consensus 50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd-----~LiVgV~sD~~i~~~--Kg-~pi~s~eER~~ll~~~k~VD~Vv~~ 121 (307)
....++++|.|||+|.||+.+|++|++.+. .+++.+.++|..... +. ..++|.+||.++++++ +||+++.
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~- 81 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV- 81 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE-
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE-
Confidence 455799999999999999999999999872 245556556643222 22 5699999999999998 9999999
Q ss_pred CCCcc------cHHHHHHHHH-hcCccEEEEcCCCCcCCCCCchHHHHHhCC-----EEEEcCCC----CCCCHHH
Q 021802 122 APYAI------TKDFMKKLFD-EYNIDYIIHGDDPCVLPDGTDAYELAKKAG-----RYKQIKRT----EGVSSTD 181 (307)
Q Consensus 122 ~py~~------t~dfle~ll~-~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g-----~v~vv~rt----~~VSST~ 181 (307)
.||+. +++|++.++. ++++..||+|+||+||+++.++.+.+++.+ .+.+++.. ..||||+
T Consensus 82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr 157 (157)
T PF06574_consen 82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR 157 (157)
T ss_dssp E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence 88862 4799998666 899999999999999999998888888764 56777763 4699995
No 22
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.84 E-value=2.1e-20 Score=176.76 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=106.4
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEeCChhhhhc--CCCCCCCHHHHHHHHHHccCccEEEEcCCCcc
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGD-----QLVVGVVSDAEIIAN--KGPPVTPLHERMIMVNAVKWVDEVISDAPYAI 126 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd-----~LiVgV~sD~~i~~~--Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~ 126 (307)
++++|+|||+|.||+++|++|++.++ ..++.+.++|..... +.+++++.+||.++++++ +||.+++ .||+-
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence 57999999999999999999998753 355566666543222 223499999999999998 9999999 89852
Q ss_pred ------cHHHHHHHH-HhcCccEEEEcCCCCcCCCCCchHHHHHhCC-----EEEEcCCC---CCCCHHHHHHHHHhh
Q 021802 127 ------TKDFMKKLF-DEYNIDYIIHGDDPCVLPDGTDAYELAKKAG-----RYKQIKRT---EGVSSTDIVGRMLLC 189 (307)
Q Consensus 127 ------t~dfle~ll-~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g-----~v~vv~rt---~~VSST~Ir~rIl~~ 189 (307)
+++|+++++ ++++++.||+|+||+||+++.++++.+++.+ .+.+++.. +.||||.||+.|...
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G 156 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG 156 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence 368998866 4599999999999999999998888888754 33444442 579999999999854
No 23
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=8.7e-20 Score=176.81 Aligned_cols=130 Identities=34% Similarity=0.510 Sum_probs=113.5
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHccCccEEEEcCCCcccHHH
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAVKWVDEVISDAPYAITKDF 130 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~df 130 (307)
.|++.||||.+|.||..+|.|||++||.||||+++|.++.+.|| +|+.+++.|+..+.++..||.|+. |++|.
T Consensus 334 vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~edT 408 (467)
T COG2870 334 VVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDEDT 408 (467)
T ss_pred EEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecCCC
Confidence 79999999999999999999999999999999999999998898 899999999999999999999999 55666
Q ss_pred HHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802 131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
-++|++..+||.+|.|-||....- .+.-.....+|++..++-.++.|||.|+++|..
T Consensus 409 P~~LI~~~~PdilVKGgDy~~~~i-~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~ 465 (467)
T COG2870 409 PEELIEAVKPDILVKGGDYKIEKI-VGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA 465 (467)
T ss_pred HHHHHHHhCcceEEccCCCChhhc-cchhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence 667778899999999999975311 122233346789999999999999999999974
No 24
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.81 E-value=1.4e-19 Score=172.02 Aligned_cols=137 Identities=22% Similarity=0.294 Sum_probs=109.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEeCChhhhhcC-C--CCCCCHHHHHHHHHHccCccEEEEcC
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQ-----LVVGVVSDAEIIANK-G--PPVTPLHERMIMVNAVKWVDEVISDA 122 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~-----LiVgV~sD~~i~~~K-g--~pi~s~eER~~ll~~~k~VD~Vv~~~ 122 (307)
...++++|+|||+|+||+++|++|++.+.+ +++.+.+.|.-...+ . ..+++.++|.+.++.+ +||.++. .
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~ 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence 456999999999999999999999977632 344454444322222 1 2489999999999999 9999999 8
Q ss_pred CCcc------cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCCC----CCCCHHHHHHHHHh
Q 021802 123 PYAI------TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKRT----EGVSSTDIVGRMLL 188 (307)
Q Consensus 123 py~~------t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~rt----~~VSST~Ir~rIl~ 188 (307)
+|+. .++|++.+++.+++++||+|+||+||+++.++.++++..+ .+.+++.. .+||||.||+.+..
T Consensus 93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~ 172 (304)
T COG0196 93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE 172 (304)
T ss_pred eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence 8862 4789998888999999999999999999998888888765 46666663 35999999999874
Q ss_pred h
Q 021802 189 C 189 (307)
Q Consensus 189 ~ 189 (307)
.
T Consensus 173 g 173 (304)
T COG0196 173 G 173 (304)
T ss_pred C
Confidence 3
No 25
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.78 E-value=1.3e-18 Score=144.57 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=98.0
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccC-ccEEEEcCCCc-----c
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKW-VDEVISDAPYA-----I 126 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~-VD~Vv~~~py~-----~ 126 (307)
+++.|+||++|.||+.++++|++.+ +.++|.+.+++.... +..++++.++|+++++++.. +|.++. .++. .
T Consensus 2 ~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~-~~~~~~~~~~ 79 (143)
T cd02039 2 GIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVP-VDFPEVKILL 79 (143)
T ss_pred eEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEE-EecChhhccC
Confidence 7899999999999999999999999 999999988764322 12588999999999999843 788866 4432 1
Q ss_pred cHHHHHHHHHhcCccEEEEcCCCCcCCCCCch--HHHHHhCCEEEEcCCC---CCCCHHHHHHH
Q 021802 127 TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDA--YELAKKAGRYKQIKRT---EGVSSTDIVGR 185 (307)
Q Consensus 127 t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~--y~~lk~~g~v~vv~rt---~~VSST~Ir~r 185 (307)
+.+|+..++..++++++++|.|+.++.+..+. ...+.....+.++++. ..||||.||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 80 AVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred HHHHHHHHHHHcCCcEEEECCccccCCchhhhHHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 23466666677999999999999988765432 1122223456667775 57999999974
No 26
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.72 E-value=8.9e-18 Score=145.43 Aligned_cols=132 Identities=26% Similarity=0.336 Sum_probs=92.9
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc---cH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI---TK 128 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~---t~ 128 (307)
.+|++.|+||++|.||..+|++|++++|+|+|||++|+.+...|..|+++.++|+++++. +++.+.+...+.+ +.
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence 379999999999999999999999999999999999987766666799999999999996 4544433222221 11
Q ss_pred HHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCC-----CCCCCHHHHHHHHHhh
Q 021802 129 DFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGRMLLC 189 (307)
Q Consensus 129 dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~r-----t~~VSST~Ir~rIl~~ 189 (307)
.|.... ..++|++|+|+|...+. .-.-+..++.| ++.+++. ++.+|||.||+++...
T Consensus 80 ~~gp~~--~~~~d~ivvs~et~~~~--~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~ 145 (153)
T PRK00777 80 PYGPAL--EDDFDAIVVSPETYPGA--LKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE 145 (153)
T ss_pred cCCCcc--ccCCCEEEEChhhhhhH--HHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence 111111 23699999999965431 11112333333 4555655 5779999999988643
No 27
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.64 E-value=3.5e-15 Score=132.66 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=94.8
Q ss_pred cccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCccEEEEc-------CC-----C
Q 021802 58 GCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVDEVISD-------AP-----Y 124 (307)
Q Consensus 58 G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~VD~Vv~~-------~p-----y 124 (307)
=.|||+|.||..++++|.+.++.+.|.+.+. + .+.++.++|++|++.. ++.+.+..- .| |
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~~ 78 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPSY 78 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChhh
Confidence 3699999999999999999998887777654 1 3567999999999883 444433220 11 1
Q ss_pred c--------------ccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhC----CEEEEcCC----CCCCCHHHH
Q 021802 125 A--------------ITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA----GRYKQIKR----TEGVSSTDI 182 (307)
Q Consensus 125 ~--------------~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~----g~v~vv~r----t~~VSST~I 182 (307)
- ..++|++.+.++++++.|++|+||+||+++.++.+.+++. .++.+++| .+.+|||.|
T Consensus 79 ~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~I 158 (182)
T smart00764 79 FLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISASTV 158 (182)
T ss_pred hcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHHHH
Confidence 0 0258887666779999999999999999999888887764 45677777 356999999
Q ss_pred HHHHHh
Q 021802 183 VGRMLL 188 (307)
Q Consensus 183 r~rIl~ 188 (307)
|+.|.+
T Consensus 159 R~~L~~ 164 (182)
T smart00764 159 RKLLKE 164 (182)
T ss_pred HHHHHc
Confidence 999954
No 28
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.63 E-value=8e-15 Score=139.46 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=98.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE---------
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--------- 120 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~--------- 120 (307)
.+.+-+.|+|||+|.||..++++|.+.++.++|.+-+. + .+.++.++|++|++. ++..+.+.+
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~ 186 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS 186 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence 56789999999999999999999999999887777553 2 467899999999988 333333322
Q ss_pred cCCC----------------c-ccHHHHHHHH-HhcCccEEEEcCCCCcCCCCCchHHHHHhC----CEEEEcCC----C
Q 021802 121 DAPY----------------A-ITKDFMKKLF-DEYNIDYIIHGDDPCVLPDGTDAYELAKKA----GRYKQIKR----T 174 (307)
Q Consensus 121 ~~py----------------~-~t~dfle~ll-~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~----g~v~vv~r----t 174 (307)
.+.| . .+++|++ ++ +++++..||+|+||+||+++.++..+++.+ ..+.++++ .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~~~~g 265 (297)
T cd02169 187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERKKYDG 265 (297)
T ss_pred cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEecccccCC
Confidence 1111 0 0258988 55 569999999999999999998775555542 34666665 2
Q ss_pred CCCCHHHHHHHHHhh
Q 021802 175 EGVSSTDIVGRMLLC 189 (307)
Q Consensus 175 ~~VSST~Ir~rIl~~ 189 (307)
+.||||.||+.|.++
T Consensus 266 ~~ISST~IR~~l~~G 280 (297)
T cd02169 266 QPISASTVRQLLKEG 280 (297)
T ss_pred cEEcHHHHHHHHHcC
Confidence 579999999999754
No 29
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.62 E-value=4.6e-15 Score=130.09 Aligned_cols=126 Identities=23% Similarity=0.250 Sum_probs=85.3
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHH-HccCcc-EEEEcCCCc---cc
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVN-AVKWVD-EVISDAPYA---IT 127 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~-~~k~VD-~Vv~~~py~---~t 127 (307)
|+++.|.||++|.||++++++|++.+|+|+|+|.+++. ..|..+.++.+||++|++ +++.++ ..+...|.. ..
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~~~ 78 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIERN 78 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCccHH
Confidence 47899999999999999999999999999999888664 234445567799999994 467763 312113321 11
Q ss_pred HHHHHHHHHh-cCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcC---CCCCCCHHHHHHHHHhh
Q 021802 128 KDFMKKLFDE-YNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIK---RTEGVSSTDIVGRMLLC 189 (307)
Q Consensus 128 ~dfle~ll~~-l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~---rt~~VSST~Ir~rIl~~ 189 (307)
..+...+... .++|+|+.|+... .+++++. .++...+ |+ ++|||+||++|...
T Consensus 79 ~~w~~~v~~~~p~~D~vf~~~~~~--------~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~ 136 (165)
T TIGR01527 79 SIWVSYVESMTPPFDVVYSNNPLV--------RRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG 136 (165)
T ss_pred HHHHHHHHHhCCCCCEEEECCHHH--------HHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence 2222211111 2789999994322 3445554 4666666 55 89999999999753
No 30
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.61 E-value=1.7e-14 Score=125.30 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=89.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccHH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKD 129 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~d 129 (307)
+++++.|+||++|.||+.++++|++.+|+|++++..++ .| +++.+.++|++|++. ++++|.+.+ .++. .+.+
T Consensus 2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~t~~ 75 (159)
T PRK00168 2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEV-VSFDGLLVD 75 (159)
T ss_pred cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEE-ecCCccHHH
Confidence 36899999999999999999999999999999987765 34 578999999999999 889998877 4443 3445
Q ss_pred HHHHHHHhcCccEEEEcCCCCcCCCCCchHHHH---HhC----CEEEEcCCC--CCCCHHHHHHHHHhh
Q 021802 130 FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA---KKA----GRYKQIKRT--EGVSSTDIVGRMLLC 189 (307)
Q Consensus 130 fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~l---k~~----g~v~vv~rt--~~VSST~Ir~rIl~~ 189 (307)
++ +.+++++++.|-|-.. +++.-.... +.. ..+..+... ..||||.||+++...
T Consensus 76 ~~----~~~~~~~~~~gl~~w~--d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 76 FA----REVGATVIVRGLRAVS--DFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred HH----HHcCCCEEEecCcchh--hHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 54 5678999999965332 111000011 111 123233322 369999999999743
No 31
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.57 E-value=2.3e-14 Score=123.68 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=87.7
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCc-ccHHHH
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYA-ITKDFM 131 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~-~t~dfl 131 (307)
+++.|+||++|.||..++++|++.+|+++++++.++ .| .++++.++|++|++. +++++.+.+ .++. .+.+++
T Consensus 2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v-~~~es~t~~~l 75 (153)
T cd02163 2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEV-DGFDGLLVDFA 75 (153)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEe-cCCcchHHHHH
Confidence 689999999999999999999999999999998765 34 478999999999998 778888877 4443 344554
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCCCchHHHHH--hC-----CEEEEcCCC--CCCCHHHHHHHHHhh
Q 021802 132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAK--KA-----GRYKQIKRT--EGVSSTDIVGRMLLC 189 (307)
Q Consensus 132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk--~~-----g~v~vv~rt--~~VSST~Ir~rIl~~ 189 (307)
+.++++++++|-|-.... +.-..+.. .. ..+..+... ..+|||.||+++...
T Consensus 76 ----~~l~~~~~i~G~d~~~~~--e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g 136 (153)
T cd02163 76 ----RKHGANVIVRGLRAVSDF--EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG 136 (153)
T ss_pred ----HHcCCCEEEECCcchhhH--HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence 567899999996633211 11001110 00 123322222 259999999999854
No 32
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.57 E-value=1.3e-14 Score=128.54 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=93.6
Q ss_pred cCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHc-cC------ccE
Q 021802 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAV-KW------VDE 117 (307)
Q Consensus 47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~-k~------VD~ 117 (307)
+.+...+|+++|+||++|.||+.+|++|.+++ +.++||+.+|+.....+. ..++|.++|.+.+++. .- ++.
T Consensus 15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i 94 (177)
T PLN02388 15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQA 94 (177)
T ss_pred CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 33345579999999999999999999999998 479999999997533222 5799999999998872 11 122
Q ss_pred EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEE---cCC---CCCCCHHHHHHHHH
Q 021802 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQ---IKR---TEGVSSTDIVGRML 187 (307)
Q Consensus 118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~v---v~r---t~~VSST~Ir~rIl 187 (307)
+-++.||..+.. ..++|++|++..-..|...-+.++. +.| .+.+ +.. ..+||||+||+|+.
T Consensus 95 ~~i~D~~Gpt~~-------~~~~d~LVVS~ET~~g~~~IN~~R~--e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~ 165 (177)
T PLN02388 95 EPIIDPYGPSIV-------DENLEAIVVSKETLPGGLSVNKKRA--ERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEA 165 (177)
T ss_pred EEecCCCCCccc-------CCCCCEEEEcHhHhhhHHHHHHHHH--HCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHH
Confidence 223466654321 1468999999987766443343332 222 2332 222 35899999999998
Q ss_pred hhhh
Q 021802 188 LCVR 191 (307)
Q Consensus 188 ~~~~ 191 (307)
+..+
T Consensus 166 ~~~~ 169 (177)
T PLN02388 166 EKAV 169 (177)
T ss_pred HHHH
Confidence 7665
No 33
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.55 E-value=2.4e-14 Score=137.21 Aligned_cols=127 Identities=24% Similarity=0.327 Sum_probs=92.4
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc--cCccEEEE---cCCCccc
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV--KWVDEVIS---DAPYAIT 127 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~--k~VD~Vv~---~~py~~t 127 (307)
+|++.|+||.+|.||..+|++|++++|+|+|||++|+.+.+.|.+| .|.++|.+++++. +.++.+.+ +.||..+
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt 80 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT 80 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence 5999999999999999999999999999999999999887666667 9999999999993 56665433 3455432
Q ss_pred HHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCC-----CCCCCHHHHHHHHHhh
Q 021802 128 KDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGRMLLC 189 (307)
Q Consensus 128 ~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~r-----t~~VSST~Ir~rIl~~ 189 (307)
. ...++|++|++.+-..+...-+ +..++.| ++.+++. ...+|||+||+.....
T Consensus 81 ~-------~~~~~d~IVVS~ET~~~~~~IN--~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~ 142 (322)
T PRK01170 81 L-------YEEDYEIIVVSPETYQRALKIN--EIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDG 142 (322)
T ss_pred c-------ccCCCCEEEEeccccccHHHHH--HHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccc
Confidence 1 1257999999999766432211 2233333 3334433 2458999999876543
No 34
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.53 E-value=1.4e-14 Score=121.01 Aligned_cols=130 Identities=28% Similarity=0.272 Sum_probs=76.7
Q ss_pred EEecccCcCCHHHHHHHHHHHHcCCe-EEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccE----------------
Q 021802 55 YMDGCFDMMHYGHCNALRQARALGDQ-LVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE---------------- 117 (307)
Q Consensus 55 ~~~G~FD~lH~GH~~lL~qAk~~gd~-LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~---------------- 117 (307)
++.|+||++|.||+.++++|++.++. +++++.++....+. +++++|.++|++|++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~~~ 79 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKKKY 79 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHHHS
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc-ccccCcHHHHHHHHHHHHhhcCCccccchhHHhHhhhc
Confidence 57899999999999999999999987 67777776644321 1489999999999999777766
Q ss_pred ------EEEcCCC--cc-cHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcCCCCCCCHHHHHHH
Q 021802 118 ------VISDAPY--AI-TKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIKRTEGVSSTDIVGR 185 (307)
Q Consensus 118 ------Vv~~~py--~~-t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~rt~~VSST~Ir~r 185 (307)
++++... .+ .....+++++.+++.++..+.+..........+...... ..+........||||+||+|
T Consensus 80 ~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 80 PDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER 157 (157)
T ss_dssp TSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred cccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence 4554440 00 001122334456666666664433211111122111121 12333444566999999987
No 35
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.52 E-value=2.4e-13 Score=118.72 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=85.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCcc----EEEE-cCC-Cc
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVD----EVIS-DAP-YA 125 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD----~Vv~-~~p-y~ 125 (307)
++++.|.||++|.||+.++++|++.+|+|+++|.++... .+....++.+||++|++. ++.+| .+.. ..+ +.
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~ 78 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE 78 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence 478999999999999999999999999999998765432 222455788999999994 66665 3433 122 12
Q ss_pred ccHHHHHHHHHhc-CccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCCC--CCCCHHHHHHHHHh
Q 021802 126 ITKDFMKKLFDEY-NIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKRT--EGVSSTDIVGRMLL 188 (307)
Q Consensus 126 ~t~dfle~ll~~l-~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~rt--~~VSST~Ir~rIl~ 188 (307)
..+.|.+.+.... ++|+++.|+++.. ...+. +..+..+++. +++|+|.||++|..
T Consensus 79 ~~~~w~~~v~~~vp~~div~~g~~~~~--------~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~ 137 (163)
T cd02166 79 RNSLWVSYVESLTPPFDVVYSGNPLVA--------RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG 137 (163)
T ss_pred chHHHHHHHHHHCCCCCEEEECchHHH--------HhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence 2344444332222 5789999864221 12233 3455567764 47999999999873
No 36
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.49 E-value=6.7e-14 Score=103.12 Aligned_cols=65 Identities=48% Similarity=0.700 Sum_probs=57.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccE
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDE 117 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~ 117 (307)
++++.|+||++|.||+.++++|++.++.+++++.+|+.....|..++++.++|.++++.|++++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence 47899999999999999999999999989999988877655554599999999999999977653
No 37
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.49 E-value=2.3e-14 Score=123.96 Aligned_cols=47 Identities=55% Similarity=1.038 Sum_probs=43.7
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~ 294 (307)
++++||++|+||+||+||+++|++|+++||+|||||++|++++.+|+
T Consensus 1 ~~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~ 47 (152)
T cd02173 1 GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKG 47 (152)
T ss_pred CCeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcC
Confidence 36899999999999999999999999999999999999999987553
No 38
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.46 E-value=1.2e-12 Score=113.15 Aligned_cols=121 Identities=20% Similarity=0.270 Sum_probs=80.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc-CccEEEEcCCCc-ccHHHH
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK-WVDEVISDAPYA-ITKDFM 131 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k-~VD~Vv~~~py~-~t~dfl 131 (307)
+++.|+||++|.||++++++|++.+|++++++..++ .| .+..+.++|++|++.+- +-+.+.+ .++. .+.+++
T Consensus 2 ~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~~~~~~~~v-~~~e~yt~dt~ 75 (155)
T TIGR01510 2 ALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SK-KPLFSLEERVELIKDATKHLPNVRV-DVFDGLLVDYA 75 (155)
T ss_pred EEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHHhhCCCeEE-cCccchHHHHH
Confidence 789999999999999999999999999999987543 34 47789999999999952 2233333 2332 334444
Q ss_pred HHHHHhcCccEEEEcCCCCcCCCCCchHHHHHh---------C-CEEEEcCC--CCCCCHHHHHHHHHhh
Q 021802 132 KKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKK---------A-GRYKQIKR--TEGVSSTDIVGRMLLC 189 (307)
Q Consensus 132 e~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~---------~-g~v~vv~r--t~~VSST~Ir~rIl~~ 189 (307)
+.++.++++.|-|-..... .+++. . ..+..+.- ...||||.||+++...
T Consensus 76 ----~~l~~~~~i~G~~~~~~~~-----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g 136 (155)
T TIGR01510 76 ----KELGATFIVRGLRAATDFE-----YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG 136 (155)
T ss_pred ----HHcCCCEEEecCcchhhHH-----HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence 4578899999865332111 11111 0 11222222 2279999999999754
No 39
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.44 E-value=1e-13 Score=130.05 Aligned_cols=54 Identities=35% Similarity=0.581 Sum_probs=46.7
Q ss_pred CCCCCeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcccccccCCCcccc
Q 021802 245 PGPDARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTVRLKNPSVSFI 299 (307)
Q Consensus 245 ~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~v~~~~~~~~~~ 299 (307)
|.....+||++|+|||||+||+++|++||++| ++|||||++|+.++++|+. |+.
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGr-PIm 78 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK-TVM 78 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCC-CCC
Confidence 34456899999999999999999999999995 7999999999999887653 443
No 40
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.44 E-value=1e-13 Score=119.82 Aligned_cols=47 Identities=45% Similarity=0.901 Sum_probs=43.0
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcccccccCCC
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQTVRLKNPS 295 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~~v~~~~~~ 295 (307)
.+.||++|+||+||+||+++|++|+++| |+|||||++|++++++|+.
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~ 50 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP 50 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC
Confidence 3679999999999999999999999999 9999999999999876543
No 41
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.44 E-value=2.2e-13 Score=116.80 Aligned_cols=122 Identities=26% Similarity=0.346 Sum_probs=81.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCC--CCCCCHHHHHHHHHHc-cCc------cEEEEcC
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG--PPVTPLHERMIMVNAV-KWV------DEVISDA 122 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg--~pi~s~eER~~ll~~~-k~V------D~Vv~~~ 122 (307)
+|++.|+||++|.||+.+|++|.+++ ++++||+.+|+... .|. .++++.++|+++++.+ ... +.+-+..
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 38899999999999999999999998 78999999988432 343 3689999999999884 221 1222245
Q ss_pred CCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcC------CCCCCCHHHHHH
Q 021802 123 PYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIK------RTEGVSSTDIVG 184 (307)
Q Consensus 123 py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~------rt~~VSST~Ir~ 184 (307)
||..+.. .-..|++|+...-..+...-+. .-++.| .+.+++ -...||||+||+
T Consensus 80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~~~iN~--~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 80 PYGPTGT-------DPDLEAIVVSPETYPGALKINR--KREENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCCccc-------CCCCCEEEEcHHHhhhHHHHHH--HHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 5554321 1357999999875544222221 122233 233322 235799999986
No 42
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.40 E-value=1e-11 Score=111.55 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=91.0
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEc------
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------ 121 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~------ 121 (307)
+++++.|+|||+|.||+.++++|++.. |++++.+++.+. .|. +...+.++|++|++. ++..+.+.++
T Consensus 5 ~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~ 81 (203)
T PRK00071 5 RIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIELER 81 (203)
T ss_pred EEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHhC
Confidence 468999999999999999999999876 777777766552 343 468899999999987 4566655552
Q ss_pred CCCcccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC------------------------
Q 021802 122 APYAITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT------------------------ 174 (307)
Q Consensus 122 ~py~~t~dfle~ll~~l~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt------------------------ 174 (307)
...+.|.+.++.+.++++ .+ +.++|.|- .....|.+..++++ ...+.+++|.
T Consensus 82 ~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~-~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i~~ 160 (203)
T PRK00071 82 PGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKRWEEILD-LVHFVVVPRPGYPLEALALPALQQLLEAAGAITL 160 (203)
T ss_pred CCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHH-hCcEEEEeCCCCCccccchhHHHHhhccCCCEEE
Confidence 122345677776655552 22 78889884 33456765433443 3445555441
Q ss_pred -----CCCCHHHHHHHHHh
Q 021802 175 -----EGVSSTDIVGRMLL 188 (307)
Q Consensus 175 -----~~VSST~Ir~rIl~ 188 (307)
..||||+||+++..
T Consensus 161 ~~~~~~~ISST~IR~~l~~ 179 (203)
T PRK00071 161 LDVPLLAISSTAIRERIKE 179 (203)
T ss_pred EeCCCCccCHHHHHHHHHc
Confidence 24899999998864
No 43
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.39 E-value=7.8e-12 Score=111.17 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=91.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCccEEEEc------CCC
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVDEVISD------APY 124 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~VD~Vv~~------~py 124 (307)
+++.|+||++|.||..+++.|++.+ |++++.+..++. .|+....+.++|++|++.+ +..+.+.+. ..+
T Consensus 2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~ 78 (192)
T cd02165 2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP 78 (192)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence 6889999999999999999999998 898887766542 3435788999999999974 344444441 122
Q ss_pred cccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC--------------------------C
Q 021802 125 AITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT--------------------------E 175 (307)
Q Consensus 125 ~~t~dfle~ll~~l~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt--------------------------~ 175 (307)
+.|.+.++.+.+.++ .+ +.++|.|- ...+.|.+..++++ ...+.+++|. .
T Consensus 79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~-~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
T cd02165 79 SYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLS-LVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLL 157 (192)
T ss_pred CCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHH-hCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCcc
Confidence 345677777666553 34 77788884 34456765444443 3455555552 2
Q ss_pred CCCHHHHHHHHHhh
Q 021802 176 GVSSTDIVGRMLLC 189 (307)
Q Consensus 176 ~VSST~Ir~rIl~~ 189 (307)
.||||+||+++...
T Consensus 158 ~iSST~IR~~~~~g 171 (192)
T cd02165 158 NISSTEIRERLKNG 171 (192)
T ss_pred ccCHHHHHHHHHcC
Confidence 49999999998744
No 44
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.35 E-value=1.7e-11 Score=110.38 Aligned_cols=135 Identities=24% Similarity=0.267 Sum_probs=98.7
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEE------
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVIS------ 120 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~------ 120 (307)
...+++.|+||++|.||+.+.++|.+.. |+|++.++..+ ..|. +...+.++|++|++- ++..+...+
T Consensus 3 ~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~ 79 (197)
T COG1057 3 KKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREIK 79 (197)
T ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHHH
Confidence 4568999999999999999999999875 66666665554 2454 579999999999987 555544322
Q ss_pred cCCCcccHHHHHHHHHhcCcc---EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCCC---------------------
Q 021802 121 DAPYAITKDFMKKLFDEYNID---YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRTE--------------------- 175 (307)
Q Consensus 121 ~~py~~t~dfle~ll~~l~~d---~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt~--------------------- 175 (307)
..+.+.|.+.++.+.+++++| +.++|.|- ...+.|.+ ++.+-+.+.+.+++|..
T Consensus 80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~-~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
T COG1057 80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYD-WDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLP 158 (197)
T ss_pred cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhh-HHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccCc
Confidence 133345778888776678888 57888874 45566774 45555666777766632
Q ss_pred --CCCHHHHHHHHHhh
Q 021802 176 --GVSSTDIVGRMLLC 189 (307)
Q Consensus 176 --~VSST~Ir~rIl~~ 189 (307)
.||||.||+++...
T Consensus 159 ~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 159 RLDISSTEIRERIRRG 174 (197)
T ss_pred cccCchHHHHHHHhCC
Confidence 49999999999754
No 45
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.33 E-value=1.7e-11 Score=109.00 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=82.4
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cC--c--cEEEEcCCC--c-
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KW--V--DEVISDAPY--A- 125 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~--V--D~Vv~~~py--~- 125 (307)
++++|.||++|.||+.++++|.+.+++|+|++.+.+.. +.+ ++.++.+||++|++.+ .. + +.+.+ .|. .
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i-~pi~D~~ 78 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI-KNPWTSEEREVMIEAALSDAGADLARVHF-RPLRDHL 78 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC-CCCcCHHHHHHHHHHHHhccCCCcceEEE-EecCCCC
Confidence 58999999999999999999999999999999776432 122 3668999999999984 22 2 23433 221 1
Q ss_pred -ccHHHHHHHH---H---hcCccEEEEcCCCCcCCCCCchHH-HHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802 126 -ITKDFMKKLF---D---EYNIDYIIHGDDPCVLPDGTDAYE-LAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 126 -~t~dfle~ll---~---~l~~d~VV~GdD~~fg~~g~d~y~-~lk~~g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
.+.-+...+. . ..+++++++|.|... ..-|. +..+. .+..++..+.+|||+||++|..
T Consensus 79 ~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~----~~~~~~lfpe~-~~~~~p~~~~iSsT~IR~~i~~ 144 (181)
T cd02168 79 YSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA----SSYYLRSFPQW-DYLEVPNYPDLNATDIRRAYFE 144 (181)
T ss_pred CChHHHHHHHHHhChHhhCCCCcEEEeCCccCC----CccceeecCCc-CeecCccccccCHHHHHHHHHh
Confidence 1222332221 1 135688888976531 11111 11121 2445566678999999999986
No 46
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1.1e-12 Score=127.79 Aligned_cols=50 Identities=42% Similarity=0.785 Sum_probs=45.2
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc----cCCCccc
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL----KNPSVSF 298 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~----~~~~~~~ 298 (307)
.++|+++||||++|+||+.||++||++||.||||+|+|.++++ .||++|.
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~ 385 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSE 385 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcH
Confidence 4699999999999999999999999999999999999999987 3555554
No 47
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.31 E-value=3e-11 Score=103.40 Aligned_cols=122 Identities=23% Similarity=0.245 Sum_probs=82.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCC-cccHHH
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPY-AITKDF 130 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py-~~t~df 130 (307)
++++.|+|||+|.||+.++++|.+++|+++|++..++ .| ++.++.++|+++++. ++..+.+-+...+ ....+|
T Consensus 3 iai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v~~ 77 (140)
T PRK13964 3 IAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTAEI 77 (140)
T ss_pred EEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHHHH
Confidence 6899999999999999999999999999999998775 35 478999999999976 4555555441111 233455
Q ss_pred HHHHHHhcCccEEEEcCCCCcCCCCCchHHHH-----HhC-C--E-EEEcCC--CCCCCHHHHHHHHH
Q 021802 131 MKKLFDEYNIDYIIHGDDPCVLPDGTDAYELA-----KKA-G--R-YKQIKR--TEGVSSTDIVGRML 187 (307)
Q Consensus 131 le~ll~~l~~d~VV~GdD~~fg~~g~d~y~~l-----k~~-g--~-v~vv~r--t~~VSST~Ir~rIl 187 (307)
. ++.+++++|.|=.-..+ =.|+.. +.. . . +..... ..-||||.||+...
T Consensus 78 ~----~~~~a~~ivrGlR~~~D----feyE~~~a~~n~~l~~~ietvfl~~~~~~~~iSSs~vre~~~ 137 (140)
T PRK13964 78 A----KKLGANFLIRSARNNID----FQYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLRHKKF 137 (140)
T ss_pred H----HHCCCeEEEEecCCCcc----HHHHHHHHHHHHhhcCCCeEEEeecCCCCCEEeHHHHHHHHH
Confidence 5 56899999999643211 013221 111 1 1 222222 34699999998653
No 48
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.31 E-value=3.4e-11 Score=107.42 Aligned_cols=129 Identities=26% Similarity=0.323 Sum_probs=86.6
Q ss_pred EecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEc------CCCc
Q 021802 56 MDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------APYA 125 (307)
Q Consensus 56 ~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~------~py~ 125 (307)
+.|+||++|.||+.++++|++.. |++++.+...+. .|. +...+.++|++|++. ++..+.+.++ ...+
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~s 78 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPS 78 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCC
Confidence 57999999999999999999875 677776665542 343 455799999999985 5555555442 1123
Q ss_pred ccHHHHHHHHHhc-Ccc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC----------------------------
Q 021802 126 ITKDFMKKLFDEY-NID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT---------------------------- 174 (307)
Q Consensus 126 ~t~dfle~ll~~l-~~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt---------------------------- 174 (307)
.|.+.++.+-+++ +.+ +.++|.|- .....|.+-.++++. ..+.+++|.
T Consensus 79 yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~-~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~~ 157 (193)
T TIGR00482 79 YTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLEL-VHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNPR 157 (193)
T ss_pred CHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHh-CcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCCc
Confidence 4567777666655 233 78889884 334467654344443 345555552
Q ss_pred CCCCHHHHHHHHHh
Q 021802 175 EGVSSTDIVGRMLL 188 (307)
Q Consensus 175 ~~VSST~Ir~rIl~ 188 (307)
..||||+||+++.+
T Consensus 158 ~~iSST~IR~~l~~ 171 (193)
T TIGR00482 158 VPISSTEIRQRIRQ 171 (193)
T ss_pred cccCHHHHHHHHHc
Confidence 24899999998864
No 49
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.30 E-value=5.4e-11 Score=105.15 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=82.4
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-c--Cc--cEEEEcCCC---
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-K--WV--DEVISDAPY--- 124 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k--~V--D~Vv~~~py--- 124 (307)
++++.|.||++|.||+.++++|.+.+|+|++++.+...- .+..+.++.+||++|++.. . .+ +.+.. .|.
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~~--~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~-~pi~D~ 78 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQES--HTLKNPFTAGERILMIRKALEEEGIDLSRYYI-IPIPDI 78 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHhcCCCCcceeeE-ecCCCc
Confidence 689999999999999999999999999999988653211 2224457899999999863 2 22 23433 332
Q ss_pred cccHHHHHHHHHh-cCccEEEEcCCCCcCCCCCchHHHHHhC-CEEEEcC--CCCCCCHHHHHHHHHh
Q 021802 125 AITKDFMKKLFDE-YNIDYIIHGDDPCVLPDGTDAYELAKKA-GRYKQIK--RTEGVSSTDIVGRMLL 188 (307)
Q Consensus 125 ~~t~dfle~ll~~-l~~d~VV~GdD~~fg~~g~d~y~~lk~~-g~v~vv~--rt~~VSST~Ir~rIl~ 188 (307)
..+..|...+... .++|.++.|+.+. ..+.+.. ..+...+ +...+|+|+||++|..
T Consensus 79 ~~~~~w~~~v~~~~~~~d~v~~~~~y~--------~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~ 138 (174)
T PRK01153 79 EFNSIWVSHVESYTPPFDVVYTGNPLV--------ARLFREAGYEVRQPPMFNREEYSGTEIRRRMIE 138 (174)
T ss_pred chHHHHHHHHHHhCCCCCEEEECChHH--------HHhchhhCCeEecCCccccCCCCHHHHHHHHHc
Confidence 1234454443222 3678898886321 1222333 3445555 4468999999999974
No 50
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.30 E-value=2.2e-12 Score=109.96 Aligned_cols=49 Identities=41% Similarity=0.702 Sum_probs=42.1
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc---cCCCcccc
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL---KNPSVSFI 299 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~---~~~~~~~~ 299 (307)
.|+++|+||+||+||+++|++||++||+|+|.+.+|+++.+ .+|++|++
T Consensus 3 rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~ 54 (140)
T COG0615 3 RVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEE 54 (140)
T ss_pred EEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHH
Confidence 49999999999999999999999999999999999988765 34555543
No 51
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.26 E-value=1.1e-10 Score=102.98 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCc--cEEEEc--------
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWV--DEVISD-------- 121 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~V--D~Vv~~-------- 121 (307)
++++.|+||++|.||+.+++++ +..|++++.+.... ..+ ++..+.++|++|++.+ +.. +.+.++
T Consensus 4 i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~~ 78 (174)
T PRK08887 4 IAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELYA 78 (174)
T ss_pred EEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhcc
Confidence 5799999999999999999996 45688887765421 112 3667999999999873 222 234331
Q ss_pred -CCCcccHHHHHHHHHhcC-cc-EEEEcCCCC-cCCCCCchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHh
Q 021802 122 -APYAITKDFMKKLFDEYN-ID-YIIHGDDPC-VLPDGTDAYELAKKAGRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 122 -~py~~t~dfle~ll~~l~-~d-~VV~GdD~~-fg~~g~d~y~~lk~~g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
.+...|.+.++.+.++++ .+ ++++|.|-. ..+.|.+ ++.+.+...+.+.++...||||+||+++..
T Consensus 79 ~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~-~~~i~~~~~l~~~~~~~~ISST~IR~~l~~ 148 (174)
T PRK08887 79 PDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYK-ADEITQRWTVMACPEKVPIRSTDIRNALQN 148 (174)
T ss_pred CCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCC-HHHHHhhCeEEEeCCCCCcCHHHHHHHHHc
Confidence 111234566766655552 23 566688743 3345554 444444556777777778999999999974
No 52
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.26 E-value=5e-11 Score=103.71 Aligned_cols=126 Identities=20% Similarity=0.198 Sum_probs=81.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHc-cCccEEEE------cCCCc
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAV-KWVDEVIS------DAPYA 125 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~-k~VD~Vv~------~~py~ 125 (307)
++++|.||++|.||+.++++|.+.+|+|+|++.+.+. .|. +..+|.++|++|++.. +.-+.+.+ +.|+.
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~ 78 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEY 78 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---ccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCC
Confidence 5789999999999999999999999999999988763 232 5678999999999984 43233322 23321
Q ss_pred c--cHHHH---HHHHHhc---CccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcC--C-CCCCCHHHHHHHHH
Q 021802 126 I--TKDFM---KKLFDEY---NIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIK--R-TEGVSSTDIVGRML 187 (307)
Q Consensus 126 ~--t~dfl---e~ll~~l---~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~--r-t~~VSST~Ir~rIl 187 (307)
. -..+. ...+.+. ++|.++.|+++.. ..|..... +..+..++ | ...+|+|.||+-..
T Consensus 79 ~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~-----~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~ 147 (158)
T cd02167 79 PNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEA-----AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPF 147 (158)
T ss_pred chhHHHHHHHHHHHHhhhcCCCCCEEEEccCcch-----hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence 1 11223 3333321 6789999977532 11111112 22444433 2 35799999998654
No 53
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.26 E-value=9.3e-11 Score=113.47 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=87.6
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCcc--EEEEcCCC--
Q 021802 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVD--EVISDAPY-- 124 (307)
Q Consensus 50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~VD--~Vv~~~py-- 124 (307)
+..+++++|.||++|.||+.++++|++.+|+|+|++.+...-. .+ +..++.+||++|++.+ +.+| .+.+ .|.
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~-~pi~d 81 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SI-KNPFSFEERAQMIRAALAGIDLARVTI-RPLRD 81 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cC-CCCCCHHHHHHHHHHHhhcCCCceEEE-EECCC
Confidence 3457899999999999999999999999999999998653211 12 3458999999999984 4443 3433 231
Q ss_pred c-c-cHHHHHH---HHH---hcCccEEEEcCCCCcCCCCCchHH-HHHhCCEEEEcCCCCCCCHHHHHHHHHhh
Q 021802 125 A-I-TKDFMKK---LFD---EYNIDYIIHGDDPCVLPDGTDAYE-LAKKAGRYKQIKRTEGVSSTDIVGRMLLC 189 (307)
Q Consensus 125 ~-~-t~dfle~---ll~---~l~~d~VV~GdD~~fg~~g~d~y~-~lk~~g~v~vv~rt~~VSST~Ir~rIl~~ 189 (307)
. . +.-+... ... ..++|++++|.|... ..-|. +..+.+ +..++..+++|+|+||++|...
T Consensus 82 ~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~----~~~~~~~f~~~~-~~~~~~~~~~s~T~iR~~~~~~ 150 (340)
T PRK05379 82 SLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA----SSYYLRSFPQWE-LVDVPNTEDLSATEIRDAYFEG 150 (340)
T ss_pred CCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCC----ChHHHHhccccc-cccCCcccccCccHHHHHHHcC
Confidence 1 1 2223222 221 257899999977521 11221 112222 3456667899999999999864
No 54
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.25 E-value=8.3e-11 Score=109.14 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=76.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCcc----EEEE----
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVD----EVIS---- 120 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD----~Vv~---- 120 (307)
+++++.|+||++|.||+.++++|.+.. |++++.+..++ ..| ....+.++|++|++. ++..+ .+.+
T Consensus 23 ~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~E 98 (243)
T PRK06973 23 RIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATDE 98 (243)
T ss_pred eEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHhh
Confidence 357999999999999999999999874 78877776654 234 567799999999986 33221 2222
Q ss_pred --cCCCcccHHHHHHHHHhcCcc---EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCC
Q 021802 121 --DAPYAITKDFMKKLFDEYNID---YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKR 173 (307)
Q Consensus 121 --~~py~~t~dfle~ll~~l~~d---~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~r 173 (307)
....++|.+.++.+-+++.++ ++++|.|- .....|.+-.++++. ..+.+++|
T Consensus 99 i~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~-~~lvV~~R 156 (243)
T PRK06973 99 IEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDY-AHLCAATR 156 (243)
T ss_pred hhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHh-CCEEEEEC
Confidence 112234567777776667444 78889885 344567654334333 34444444
No 55
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.19 E-value=3.6e-10 Score=109.27 Aligned_cols=133 Identities=24% Similarity=0.208 Sum_probs=90.8
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH-ccCccEEEEc------C
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA-VKWVDEVISD------A 122 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~-~k~VD~Vv~~------~ 122 (307)
++++.|+|||+|.||+.++++|.+. .|++++.+...+ ..|. .+..+.++|++|++. ++..+.+.++ .
T Consensus 3 i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~ 79 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQ 79 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhCC
Confidence 5799999999999999999999986 378887775544 2454 345556999999975 4444555441 1
Q ss_pred CCcccHHHHHHHHHhcC-cc-EEEEcCCC-CcCCCCCchHHHHHhCCEEEEcCCC--------------------CCCCH
Q 021802 123 PYAITKDFMKKLFDEYN-ID-YIIHGDDP-CVLPDGTDAYELAKKAGRYKQIKRT--------------------EGVSS 179 (307)
Q Consensus 123 py~~t~dfle~ll~~l~-~d-~VV~GdD~-~fg~~g~d~y~~lk~~g~v~vv~rt--------------------~~VSS 179 (307)
..+.|.+.++.+.++++ .+ +.++|.|. ....+|.+ ++.+-+...+.+++|. ..|||
T Consensus 80 ~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~-~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~iSS 158 (342)
T PRK07152 80 NVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKN-IEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNISS 158 (342)
T ss_pred CCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccC-HHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccccCH
Confidence 12335566766655552 22 78889885 34557875 4445555567777662 24999
Q ss_pred HHHHHHHHhh
Q 021802 180 TDIVGRMLLC 189 (307)
Q Consensus 180 T~Ir~rIl~~ 189 (307)
|+||+++...
T Consensus 159 T~IR~~~~~~ 168 (342)
T PRK07152 159 TKIRKGNLLG 168 (342)
T ss_pred HHHHHHHHcC
Confidence 9999998753
No 56
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.19 E-value=1.1e-10 Score=101.04 Aligned_cols=87 Identities=22% Similarity=0.390 Sum_probs=70.5
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCCcccHHH
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPYAITKDF 130 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py~~t~df 130 (307)
+++++.|+||+++.||+.++++|.++.|+++|+|..+| .| +|.+|.+||.++++. .+..+.|-. ..|+ ..
T Consensus 3 ~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V-~~f~---~L 73 (159)
T COG0669 3 KIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEV-VGFS---GL 73 (159)
T ss_pred eeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEE-Eecc---cH
Confidence 57899999999999999999999999999999998886 35 699999999999988 345566644 3343 23
Q ss_pred HHHHHHhcCccEEEEcC
Q 021802 131 MKKLFDEYNIDYIIHGD 147 (307)
Q Consensus 131 le~ll~~l~~d~VV~Gd 147 (307)
+-+..++.++.++|-|-
T Consensus 74 lvd~ak~~~a~~ivRGL 90 (159)
T COG0669 74 LVDYAKKLGATVLVRGL 90 (159)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 33344678999999994
No 57
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.15 E-value=1.9e-10 Score=98.93 Aligned_cols=127 Identities=26% Similarity=0.348 Sum_probs=87.9
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH----ccC-cc-EEEEcCC
Q 021802 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA----VKW-VD-EVISDAP 123 (307)
Q Consensus 50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~----~k~-VD-~Vv~~~p 123 (307)
+-..|.+.|+||.+|.||..||+.|...|+.+++|+++|+.+...|...+-|.+.|++-+.. ++. -+ .+-++.|
T Consensus 4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~Dp 83 (158)
T COG1019 4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDDP 83 (158)
T ss_pred cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecCC
Confidence 44569999999999999999999999999999999999998776566899999999997766 211 12 3344678
Q ss_pred CcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC----EEEEcCC-----CCCCCHHHHHHH
Q 021802 124 YAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG----RYKQIKR-----TEGVSSTDIVGR 185 (307)
Q Consensus 124 y~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g----~v~vv~r-----t~~VSST~Ir~r 185 (307)
|.++.+ .-..+++|+...-.-++ ...-+.-.+.| .+.+++. ...+|||+||.-
T Consensus 84 ~G~t~~-------~~~~e~iVVS~ET~~~A--l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg 145 (158)
T COG1019 84 YGPTVE-------DPDFEAIVVSPETYPGA--LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG 145 (158)
T ss_pred CCCCCC-------cCceeEEEEccccchhH--HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence 765432 12468999886533221 11111222233 3555554 246999999843
No 58
>PRK13670 hypothetical protein; Provisional
Probab=99.12 E-value=2.9e-10 Score=112.00 Aligned_cols=92 Identities=22% Similarity=0.341 Sum_probs=72.9
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCC-eEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc----cH
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGD-QLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI----TK 128 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd-~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~----t~ 128 (307)
+=++==|||+|.||+.+|++|++.+. .++++|-|...+.+ ..+.+++.++|.+++..+ |||.|++ .||++ .+
T Consensus 4 ~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~sae 80 (388)
T PRK13670 4 TGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQSAD 80 (388)
T ss_pred eEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCCHH
Confidence 34455699999999999999998753 34444445444433 226799999999999998 9999999 89874 36
Q ss_pred HHHHH---HHHhcCccEEEEcCC
Q 021802 129 DFMKK---LFDEYNIDYIIHGDD 148 (307)
Q Consensus 129 dfle~---ll~~l~~d~VV~GdD 148 (307)
+|++. ++++++++.||+|.|
T Consensus 81 ~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 81 FFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred HHHHhHHHHHHHcCCCEEEEcCC
Confidence 79886 778899999999999
No 59
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.09 E-value=1.2e-09 Score=108.05 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=86.1
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChh-----hhhcCCCCCCCHHHHHHHHHHc-cCccEEEE---
Q 021802 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-----IIANKGPPVTPLHERMIMVNAV-KWVDEVIS--- 120 (307)
Q Consensus 50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~-----i~~~Kg~pi~s~eER~~ll~~~-k~VD~Vv~--- 120 (307)
+..+++++|.|||+|.||+.+|++|.+++|+|+|+|.+++. +...|....+|.++|.++++.. +..+.|.+
T Consensus 51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~ 130 (399)
T PRK08099 51 MKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAF 130 (399)
T ss_pred cCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEec
Confidence 34479999999999999999999999999999988877642 1111225688999999999984 44333422
Q ss_pred ---cCC-Ccc-cHHHH---HHHHHh--cCccEEEEcCCCCcCCCCCchHHHHHh-CCEEEEcCC---CCCCCHHHHHHHH
Q 021802 121 ---DAP-YAI-TKDFM---KKLFDE--YNIDYIIHGDDPCVLPDGTDAYELAKK-AGRYKQIKR---TEGVSSTDIVGRM 186 (307)
Q Consensus 121 ---~~p-y~~-t~dfl---e~ll~~--l~~d~VV~GdD~~fg~~g~d~y~~lk~-~g~v~vv~r---t~~VSST~Ir~rI 186 (307)
+.| |.. ...|. ...+.. .++++++.|+++. .+.| ++. +.++..++. ...||+|.||+.-
T Consensus 131 ~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d-----~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p 203 (399)
T PRK08099 131 NEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD-----APQY--EEHLGIETVLVDPKRTFMNISGTQIRENP 203 (399)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-----hHHH--HHhcCCceeeeccccccCCcCHHHHhhCH
Confidence 112 111 12233 333332 2688999997642 2344 333 334555554 3579999999876
Q ss_pred Hh
Q 021802 187 LL 188 (307)
Q Consensus 187 l~ 188 (307)
..
T Consensus 204 ~~ 205 (399)
T PRK08099 204 FR 205 (399)
T ss_pred HH
Confidence 54
No 60
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.99 E-value=3.4e-09 Score=97.19 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=52.7
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcC--Ce-E-EE-E---EeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEEcCCC
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALG--DQ-L-VV-G---VVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVISDAPY 124 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~g--d~-L-iV-g---V~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~~~py 124 (307)
.++.|+||++|.||+.++++|.+.. +. + ++ + ...++ ..| ....+.++|++|++- +...+.+.+ .+|
T Consensus 3 ~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~---~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v-~~~ 77 (225)
T cd09286 3 LLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDA---YGK-KGLASAKHRVAMCRLAVQSSDWIRV-DDW 77 (225)
T ss_pred EEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccC---CCC-CCCCCHHHHHHHHHHHHccCCCEEE-Eeh
Confidence 6788999999999999999998765 32 1 22 1 12222 123 567799999999984 555554444 222
Q ss_pred -------cccHHHHHHHHHhcC
Q 021802 125 -------AITKDFMKKLFDEYN 139 (307)
Q Consensus 125 -------~~t~dfle~ll~~l~ 139 (307)
..|-+.++.+.+++.
T Consensus 78 E~~~~~~syT~~TL~~l~~~~p 99 (225)
T cd09286 78 ESLQPEWMRTAKVLRHHREEIN 99 (225)
T ss_pred hccCCccccHHHHHHHHHHHhc
Confidence 235567766655553
No 61
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.98 E-value=3e-09 Score=95.77 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=49.8
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~ 112 (307)
..+++|.|.++|.||+++|++|.+.+|+|||++.|....... +..+|..||.+|++..
T Consensus 6 ~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a 63 (196)
T PRK13793 6 YLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN 63 (196)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence 589999999999999999999999999999999995432211 4678999999999984
No 62
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=98.96 E-value=7.7e-10 Score=95.92 Aligned_cols=44 Identities=30% Similarity=0.517 Sum_probs=40.2
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccC
Q 021802 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKN 293 (307)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~ 293 (307)
+.|++.|+||++|.||+.+|++|+++||+|+|||++|+.++.+|
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K 45 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYK 45 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccC
Confidence 46899999999999999999999999999999999998886544
No 63
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=98.93 E-value=3.3e-09 Score=100.23 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=86.6
Q ss_pred hhcCCC-CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802 45 TRKKKK-PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEVIS 120 (307)
Q Consensus 45 ~~~~~~-~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~Vv~ 120 (307)
++..++ -..|.++|+ +|.||+.++++|++.++.++|.+..+|.-... .. ..+.+.++|.++++++ +||.++.
T Consensus 17 ~~~~~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~ 92 (277)
T cd00560 17 WRAQGKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFA 92 (277)
T ss_pred HHHcCCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEEC
Confidence 333343 335789999 99999999999999999899999888753221 22 4588899999999998 9999854
Q ss_pred cCCCc--ccHHHHHHHHHhcCccEEEEcC----------------------C-CCcCCCCCchHHHHHhC
Q 021802 121 DAPYA--ITKDFMKKLFDEYNIDYIIHGD----------------------D-PCVLPDGTDAYELAKKA 165 (307)
Q Consensus 121 ~~py~--~t~dfle~ll~~l~~d~VV~Gd----------------------D-~~fg~~g~d~y~~lk~~ 165 (307)
..+. .+++|++.+.+..++..+++|. | ++||.++.+....+++.
T Consensus 93 -p~~~~m~p~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~ 161 (277)
T cd00560 93 -PSVEEMYPEGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRM 161 (277)
T ss_pred -CCHHHcCCCCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHH
Confidence 2221 2345554344557899999999 9 89999888777777764
No 64
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=98.92 E-value=1.1e-09 Score=93.68 Aligned_cols=47 Identities=43% Similarity=0.815 Sum_probs=42.5
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~ 294 (307)
++++|++.|+||.+|.||+++|++|++.|++++||++.|+...+.++
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~ 56 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKG 56 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCC
Confidence 46899999999999999999999999999999999999998765443
No 65
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=98.92 E-value=1.3e-09 Score=80.12 Aligned_cols=44 Identities=39% Similarity=0.572 Sum_probs=40.0
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCC
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNP 294 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~ 294 (307)
++++.|+||++|.||+.++++|++.++.++|++.+|+..+..++
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~ 44 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG 44 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC
Confidence 57899999999999999999999999999999999988776554
No 66
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=98.91 E-value=1.4e-09 Score=91.41 Aligned_cols=45 Identities=40% Similarity=0.809 Sum_probs=40.8
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccC
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKN 293 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~ 293 (307)
.+++++.|+||+||.||+.+|++|++.+++++||++.|+.++..+
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~ 45 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIK 45 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcC
Confidence 378999999999999999999999999999999999998775543
No 67
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=98.90 E-value=1.2e-09 Score=109.12 Aligned_cols=49 Identities=39% Similarity=0.678 Sum_probs=44.6
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCCC
Q 021802 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPS 295 (307)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~~ 295 (307)
.++++||+.|+||++|.||+++|++|+++|++|+|||++|+.++++|+.
T Consensus 338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~ 386 (473)
T PRK11316 338 RGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGE 386 (473)
T ss_pred cCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCC
Confidence 4579999999999999999999999999999999999999998765553
No 68
>PRK13671 hypothetical protein; Provisional
Probab=98.88 E-value=9.9e-09 Score=97.87 Aligned_cols=90 Identities=21% Similarity=0.361 Sum_probs=72.5
Q ss_pred EEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcc----c
Q 021802 55 YMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAI----T 127 (307)
Q Consensus 55 ~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~----t 127 (307)
=++=.|||+|.||..++++|++. +|.+++.+..++ ..|+ +.+++.++|++|++.+ |||-|++ .|+.+ .
T Consensus 4 GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sA 78 (298)
T PRK13671 4 GIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAA 78 (298)
T ss_pred eEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhch
Confidence 34567999999999999999997 488888777676 3566 6777999999999999 9999999 88643 2
Q ss_pred HHHHH---HHHHhcCccEEEEcCCC
Q 021802 128 KDFMK---KLFDEYNIDYIIHGDDP 149 (307)
Q Consensus 128 ~dfle---~ll~~l~~d~VV~GdD~ 149 (307)
+.|.. .+++.+++|.++.|.+.
T Consensus 79 e~FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 79 HIFAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 44542 37788999999988763
No 69
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.85 E-value=4.8e-08 Score=90.15 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=59.3
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeE-EEEEeCChh-hhhcCCCCCCCHHHHHHHHHH-ccCccEEEE------
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALG--DQL-VVGVVSDAE-IIANKGPPVTPLHERMIMVNA-VKWVDEVIS------ 120 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~L-iVgV~sD~~-i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~------ 120 (307)
...+..|+||++|.||+.+++.|++.. +.+ +|++...|. ....| +...+.++|++|++. +..-+.+.+
T Consensus 23 ~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~ 101 (236)
T PLN02945 23 VVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK-KGLASAEHRIQMCQLACEDSDFIMVDPWEAR 101 (236)
T ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc-CCCCCHHHHHHHHHHHhcCCCCeEecHHHhC
Confidence 345777899999999999999988763 432 332222221 11122 356799999999974 544443333
Q ss_pred cCCCcccHHHHHHHHHhcC---------cc-EEEEcCCC
Q 021802 121 DAPYAITKDFMKKLFDEYN---------ID-YIIHGDDP 149 (307)
Q Consensus 121 ~~py~~t~dfle~ll~~l~---------~d-~VV~GdD~ 149 (307)
...++.|.+.++.+.++++ ++ +.++|.|-
T Consensus 102 ~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 140 (236)
T PLN02945 102 QSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL 140 (236)
T ss_pred CCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence 1112335667766655552 23 78889984
No 70
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=98.85 E-value=2.5e-09 Score=88.99 Aligned_cols=40 Identities=38% Similarity=0.708 Sum_probs=36.9
Q ss_pred EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc
Q 021802 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL 291 (307)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~ 291 (307)
|++.|+||++|.||+++|++|+++|++++||+++|+....
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~ 40 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQ 40 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhh
Confidence 5789999999999999999999999999999999986643
No 71
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.82 E-value=6e-09 Score=84.00 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=49.7
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc
Q 021802 54 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV 112 (307)
Q Consensus 54 V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~ 112 (307)
+++.|.||++|.||+.++++|+++++.+++++..++.... + .++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV-W-QDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988775422 1 3689999999999986
No 72
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.82 E-value=6.1e-09 Score=89.20 Aligned_cols=45 Identities=40% Similarity=0.713 Sum_probs=41.3
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccccccc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLK 292 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~ 292 (307)
++++|++.|+||++|.||.++|++|++.++.++|++++|+.++..
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~ 47 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKG 47 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccC
Confidence 468899999999999999999999999999999999999877653
No 73
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=98.80 E-value=8.6e-09 Score=97.62 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=79.3
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEEEEcCCCc--cc
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEVISDAPYA--IT 127 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~Vv~~~py~--~t 127 (307)
-|.++|+ +|.||+.+|++|++.++.+++.+.++|.-... .. +.++|.++|.++++++ +||.++. ..+. .+
T Consensus 26 ~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~-p~~~~myp 100 (281)
T PRK00380 26 LVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFA-PSVEEMYP 100 (281)
T ss_pred EEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEe-CCHHHCCC
Confidence 3567787 99999999999999998888888888753222 22 4688999999999998 9999987 2221 13
Q ss_pred HHHHHHHHHhcCccEEEEcC----------------------CC-CcCCCCCchHHHHHhC
Q 021802 128 KDFMKKLFDEYNIDYIIHGD----------------------DP-CVLPDGTDAYELAKKA 165 (307)
Q Consensus 128 ~dfle~ll~~l~~d~VV~Gd----------------------D~-~fg~~g~d~y~~lk~~ 165 (307)
++|...+.. -++..+++|. |+ .||.+.......+++.
T Consensus 101 ~~f~~~i~~-~~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~ 160 (281)
T PRK00380 101 QGLQTYVSV-PGLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRM 160 (281)
T ss_pred ccceeEEEc-ccccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHH
Confidence 456544322 1378999999 99 8998877666677654
No 74
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.79 E-value=8.3e-08 Score=92.92 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=89.2
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE--cCCCc--
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--DAPYA-- 125 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~--~~py~-- 125 (307)
.+++.+.|+|||+|.||+.++++|.+++|.++|.|..+ + +..+|.++|++|++. ++..+.|.+ ..+|-
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is 211 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS 211 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence 45699999999999999999999999999998888532 2 479999999999988 555554433 22221
Q ss_pred ---cc------H------------H-HHHHHHHhcCccEEEEcCCCCcCCCCCchHH-HHH---------hCCEEEEcCC
Q 021802 126 ---IT------K------------D-FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYE-LAK---------KAGRYKQIKR 173 (307)
Q Consensus 126 ---~t------~------------d-fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~-~lk---------~~g~v~vv~r 173 (307)
++ + . |-+.+...+++..-.+|+.|.-- -...|. .++ ...++..++|
T Consensus 212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~--~t~~yn~~m~~~~~~~~~~~~I~~~~I~R 289 (332)
T TIGR00124 212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCP--VTALYNQKMKYWLEEPNDAPPIEVVEIQR 289 (332)
T ss_pred cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCH--hHHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence 11 0 1 22234445788888999987531 123453 222 1246788888
Q ss_pred C----CCCCHHHHHHHHH
Q 021802 174 T----EGVSSTDIVGRML 187 (307)
Q Consensus 174 t----~~VSST~Ir~rIl 187 (307)
. +-+|.|.||+.|.
T Consensus 290 ~~~~~~~~SASaIR~~L~ 307 (332)
T TIGR00124 290 KLAAGGPISASTVRELLA 307 (332)
T ss_pred ecCCCCeeCHHHHHHHHH
Confidence 3 3589999999984
No 75
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=98.74 E-value=1.3e-08 Score=84.84 Aligned_cols=40 Identities=38% Similarity=0.739 Sum_probs=37.4
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289 (307)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v 289 (307)
++|++.|+||.+|.||+.+|++|++.++.++|+|++|+..
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~ 41 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN 41 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH
Confidence 6799999999999999999999999999999999999743
No 76
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.73 E-value=9.4e-08 Score=92.09 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=51.5
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccE
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDE 117 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~ 117 (307)
++++.|+||++|.||+.++++|.+++|+|+|.+...+. ..|..+..+.++|++|++. ++....
T Consensus 3 i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~--~~~~~~~~~~~~R~~~l~~~~~~~~~ 66 (325)
T TIGR01526 3 IGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFY--DSKAKRPPPVQDRLRWLREIFKYQKN 66 (325)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc--CccCCCCCCHHHHHHHHHHHhccCCC
Confidence 68999999999999999999999999999998876331 1133678899999999987 455554
No 77
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=98.72 E-value=9.4e-09 Score=97.05 Aligned_cols=45 Identities=36% Similarity=0.623 Sum_probs=41.1
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhC--CCEEEEEEeCcccccccCC
Q 021802 250 RIIYIDGAFDLFHAGHVEILRIARGL--GDFLLVGIHNDQTVRLKNP 294 (307)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~--g~~liVgv~~D~~v~~~~~ 294 (307)
-.||.+|.|||||.||.++|+|||+. .-||||||++|+...+.||
T Consensus 64 VRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG 110 (348)
T KOG2804|consen 64 VRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKG 110 (348)
T ss_pred eEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccC
Confidence 56999999999999999999999986 3699999999998888776
No 78
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.53 E-value=8.5e-08 Score=82.75 Aligned_cols=51 Identities=25% Similarity=0.498 Sum_probs=45.5
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccc--cCCCcccc
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRL--KNPSVSFI 299 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~--~~~~~~~~ 299 (307)
-.+|.+.|+||-+|.||-.+|+.|...|+.+++||++|+.+++ .+++.|+.
T Consensus 5 fm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~ 57 (158)
T COG1019 5 FMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYE 57 (158)
T ss_pred ceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHH
Confidence 4679999999999999999999999999999999999999975 45677764
No 79
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.45 E-value=2.4e-07 Score=80.48 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=35.6
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
+++++.|+||++|.||+.++++|++.+|.|+|++.++.
T Consensus 2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~ 39 (159)
T PRK00168 2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP 39 (159)
T ss_pred cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC
Confidence 68999999999999999999999999999999998764
No 80
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=98.41 E-value=2.3e-07 Score=79.67 Aligned_cols=40 Identities=30% Similarity=0.600 Sum_probs=36.2
Q ss_pred EEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCcccccc
Q 021802 252 IYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRL 291 (307)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~~ 291 (307)
|++.|+||.+|.||..+|++|.+++ +.++||++.|+....
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~ 42 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKN 42 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhccc
Confidence 7889999999999999999999987 899999999985543
No 81
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.39 E-value=6.1e-07 Score=79.29 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH
Q 021802 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA 111 (307)
Q Consensus 50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~ 111 (307)
+..+.+++|.|.++|.||+.+++.|.+..|+|+|+|.++...... ...+|..||..|++.
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~--~nPfTagER~~mi~~ 61 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL--KNPFTAGERIPMIRD 61 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc--cCCCCccchhHHHHH
Confidence 456799999999999999999999999999999999998743222 356888999999885
No 82
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.37 E-value=8.4e-07 Score=82.10 Aligned_cols=134 Identities=22% Similarity=0.271 Sum_probs=87.9
Q ss_pred cCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHH----cc---CccE
Q 021802 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNA----VK---WVDE 117 (307)
Q Consensus 47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~----~k---~VD~ 117 (307)
+.++-.++...|+||-+|.||.-+|..|..++ ++++|||..|+.+.+.+- ..+.|.++|.+.+.. +| .|+.
T Consensus 138 ~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l~~~~ 217 (293)
T KOG3351|consen 138 PANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDLNVRV 217 (293)
T ss_pred chhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 33445579999999999999999999999997 789999998886643222 478999999998765 33 2344
Q ss_pred EEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCCchHHHHHhCC--EEEEcCC---CCCCCHHHHHHHHH
Q 021802 118 VISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYELAKKAG--RYKQIKR---TEGVSSTDIVGRML 187 (307)
Q Consensus 118 Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~d~y~~lk~~g--~v~vv~r---t~~VSST~Ir~rIl 187 (307)
+=+-.||.++.. .-..+++|+...-..|+..-+..+.-+-.. .+.+++- .+.+|+|++++.-.
T Consensus 218 vpi~Dp~GPt~~-------d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~kv 285 (293)
T KOG3351|consen 218 VPIHDPFGPTIT-------DPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELKV 285 (293)
T ss_pred EecccCCCCCcc-------CCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence 433367764421 135688898887655544332222211111 2444444 35699999986543
No 83
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=98.36 E-value=5.5e-07 Score=79.16 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=34.7
Q ss_pred EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccc
Q 021802 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT 288 (307)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~ 288 (307)
+++.|+||+||.||+.++++|++.+|.|+|+|.+++.
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~ 38 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE 38 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC
Confidence 5789999999999999999999999999999988874
No 84
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.29 E-value=1.1e-06 Score=75.41 Aligned_cols=38 Identities=37% Similarity=0.533 Sum_probs=35.2
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
++++.+|+||++|.||+.++++|.+.+|.|+|++..+.
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np 39 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP 39 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC
Confidence 58899999999999999999999999999999998763
No 85
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.24 E-value=1e-06 Score=72.90 Aligned_cols=40 Identities=25% Similarity=0.431 Sum_probs=36.3
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCccccc
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVR 290 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~ 290 (307)
++++.|+||++|.||+.++++|++.+ |.++|++.++....
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~ 41 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKK 41 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhh
Confidence 47899999999999999999999998 99999999986543
No 86
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=98.23 E-value=8.6e-07 Score=73.80 Aligned_cols=39 Identities=36% Similarity=0.532 Sum_probs=30.6
Q ss_pred EEeCcccccCHHHHHHHHHHHhCCCE-EEEEEeCcccccc
Q 021802 253 YIDGAFDLFHAGHVEILRIARGLGDF-LLVGIHNDQTVRL 291 (307)
Q Consensus 253 ~~~G~FDl~H~GHi~~L~~a~~~g~~-liVgv~~D~~v~~ 291 (307)
++.|+||++|.||+.+|++|++.++. +|+++.+|....+
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k 40 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHK 40 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHS
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccc
Confidence 57899999999999999999999987 7888888876654
No 87
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.14 E-value=2.3e-06 Score=68.90 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=35.9
Q ss_pred EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccccc
Q 021802 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVR 290 (307)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~ 290 (307)
+++.|+||++|.||+.++++|++.+|.+++++.++....
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc
Confidence 678999999999999999999999999999999887654
No 88
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=98.14 E-value=2.8e-06 Score=74.20 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=34.5
Q ss_pred EEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802 252 IYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289 (307)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v 289 (307)
+++.|+||+||.||+.++++|.+.+|.|+|+|.++...
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~ 39 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES 39 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC
Confidence 57899999999999999999999999999999777544
No 89
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.13 E-value=3e-06 Score=75.35 Aligned_cols=46 Identities=26% Similarity=0.521 Sum_probs=39.8
Q ss_pred CCCCCeEEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCccccc
Q 021802 245 PGPDARIIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVR 290 (307)
Q Consensus 245 ~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~ 290 (307)
+......|++.|+||.+|.||..+|++|.+.+ +.++||+++|....
T Consensus 15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~ 61 (177)
T PLN02388 15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLS 61 (177)
T ss_pred CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhc
Confidence 33346789999999999999999999999987 48999999998764
No 90
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=98.08 E-value=1.7e-05 Score=75.40 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=56.7
Q ss_pred hhcCCCCe-EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802 45 TRKKKKPV-RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEVIS 120 (307)
Q Consensus 45 ~~~~~~~~-~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~Vv~ 120 (307)
++..++++ -|.++|+ +|.||+.++++|++.++.++|.+..+|.-... .. +.+++.++|.++++++ +||.++.
T Consensus 17 ~~~~g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~ 92 (282)
T TIGR00018 17 LRMEGKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA 92 (282)
T ss_pred HHHcCCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence 34444432 3679999 99999999999999999889888888753222 22 4688999999999998 9998876
No 91
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=98.06 E-value=3.9e-06 Score=72.54 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=33.4
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D 286 (307)
+++..|+||++|.||+.++++|++.+|.|+++++.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~ 36 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN 36 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 478899999999999999999999999999999854
No 92
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=98.03 E-value=5.1e-06 Score=71.76 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=34.1
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
+++..|+||++|.||+.++++|++.+|.|+++++++.
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~ 37 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP 37 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC
Confidence 4688999999999999999999999999999998764
No 93
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=98.01 E-value=6.9e-06 Score=71.50 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=35.1
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v 289 (307)
++++.|+||++|.||+.++++|.+.+|.|+|++.++..-
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~ 39 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTR 39 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcc
Confidence 357899999999999999999999999999999988643
No 94
>PLN02660 pantoate--beta-alanine ligase
Probab=97.99 E-value=3.1e-05 Score=73.63 Aligned_cols=74 Identities=26% Similarity=0.286 Sum_probs=57.8
Q ss_pred HhhhcCCCC-eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhc-CC--CCCCCHHHHHHHHHHccCccEE
Q 021802 43 QWTRKKKKP-VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIAN-KG--PPVTPLHERMIMVNAVKWVDEV 118 (307)
Q Consensus 43 ~~~~~~~~~-~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~-Kg--~pi~s~eER~~ll~~~k~VD~V 118 (307)
+.++..+++ .-|.++|. +|.||+.++++|++.++.+++.+..+|.-... .. +.++|.++|.++++++ +||.+
T Consensus 14 ~~~~~~g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~v 89 (284)
T PLN02660 14 RAQRAQGKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAV 89 (284)
T ss_pred HHHHHcCCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEE
Confidence 334444443 24789999 99999999999999999888888888754221 22 4688999999999998 99988
Q ss_pred EE
Q 021802 119 IS 120 (307)
Q Consensus 119 v~ 120 (307)
+.
T Consensus 90 f~ 91 (284)
T PLN02660 90 FN 91 (284)
T ss_pred EC
Confidence 66
No 95
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.92 E-value=4.4e-05 Score=67.82 Aligned_cols=121 Identities=22% Similarity=0.231 Sum_probs=83.3
Q ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEEEE--cCCCc-----cc----
Q 021802 60 FDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEVIS--DAPYA-----IT---- 127 (307)
Q Consensus 60 FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~Vv~--~~py~-----~t---- 127 (307)
=++|+.||+-|+++|.+.+|.|.|-|.+.. +-.+|.++|++|+++ ++..+.|.+ +-+|- ++
T Consensus 8 aNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsYFl 80 (182)
T PF08218_consen 8 ANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSYFL 80 (182)
T ss_pred CCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhhhc
Confidence 479999999999999999999877665543 367999999999988 544555544 22231 10
Q ss_pred --------------HH-HHHHHHHhcCccEEEEcCCCCcCCCCCchHH-HHH----h-CCEEEEcCCC----CCCCHHHH
Q 021802 128 --------------KD-FMKKLFDEYNIDYIIHGDDPCVLPDGTDAYE-LAK----K-AGRYKQIKRT----EGVSSTDI 182 (307)
Q Consensus 128 --------------~d-fle~ll~~l~~d~VV~GdD~~fg~~g~d~y~-~lk----~-~g~v~vv~rt----~~VSST~I 182 (307)
.. |.+.+...+++..-.+|+.+.-- -...|. .++ . +..+.+++|. +.||-|..
T Consensus 81 K~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~--vT~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~V 158 (182)
T PF08218_consen 81 KDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSP--VTRIYNEAMKEILPPYGIEVVEIPRKEINGEPISASRV 158 (182)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCH--HHHHHHHHHHHhccccCCEEEEEecccCCCcEEcHHHH
Confidence 01 33335556899999999987531 123443 222 2 3578999995 45999999
Q ss_pred HHHHHhh
Q 021802 183 VGRMLLC 189 (307)
Q Consensus 183 r~rIl~~ 189 (307)
|+.|.+.
T Consensus 159 R~~l~~~ 165 (182)
T PF08218_consen 159 RKLLKEG 165 (182)
T ss_pred HHHHHcC
Confidence 9998744
No 96
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=97.88 E-value=1.6e-05 Score=69.20 Aligned_cols=47 Identities=30% Similarity=0.486 Sum_probs=40.0
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccccccCCCccc
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTVRLKNPSVSF 298 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v~~~~~~~~~ 298 (307)
+++++.+|+||+++.||+.++++|.+.-|.|||+|.... .++|..++
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np---~K~plFsl 48 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP---SKKPLFSL 48 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC---CcCCCcCH
Confidence 578999999999999999999999999999999998664 34555443
No 97
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=97.87 E-value=2.2e-05 Score=76.21 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=37.0
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
..+++++.|+||+||.||+.++++|.+.+|.|+|++.+..
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~ 44 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSAD 44 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCC
Confidence 4679999999999999999999999999999999998654
No 98
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.83 E-value=3.3e-05 Score=76.47 Aligned_cols=89 Identities=24% Similarity=0.434 Sum_probs=39.1
Q ss_pred EecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCcc----cH
Q 021802 56 MDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAI----TK 128 (307)
Q Consensus 56 ~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~----t~ 128 (307)
++==|+|||.||+-.|+++|+.. |. +|+|-|-..+ ..| |-+++--.|.++.-.+ |||-|++ .|+.+ .+
T Consensus 6 IIaEYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFv--QRGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~qsA~ 80 (388)
T PF05636_consen 6 IIAEYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFV--QRGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYALQSAE 80 (388)
T ss_dssp -E---TT--HHHHHHHHHHH---TSSE-EEEEE--TTS--BTSSB-SS-HHHHHHHHHHH-T-SEEEE----G-------
T ss_pred eEEeECCccHHHHHHHHHHhccCCCCE-EEEEECCCcc--cCCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCcccccccc
Confidence 34459999999999999999873 54 5556565544 345 7799999999998887 9999999 88754 24
Q ss_pred HHHH---HHHHhcCccEEEEcCCC
Q 021802 129 DFMK---KLFDEYNIDYIIHGDDP 149 (307)
Q Consensus 129 dfle---~ll~~l~~d~VV~GdD~ 149 (307)
.|.. .+++.++||+++-|...
T Consensus 81 ~FA~gaV~lL~~lgvd~l~FGsE~ 104 (388)
T PF05636_consen 81 YFARGAVSLLNALGVDYLSFGSES 104 (388)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 4543 27788899999988653
No 99
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.67 E-value=6.9e-05 Score=67.73 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=36.1
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCccc
Q 021802 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQT 288 (307)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~ 288 (307)
...++.|.|.+||.||++.+++|.+.+|.|||||.+.+.
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~ 43 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQM 43 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCC
Confidence 578889999999999999999999999999999998653
No 100
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.67 E-value=6.8e-05 Score=66.37 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=32.8
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D 286 (307)
.+++.|.||+||.||+.++++|.+.+|.|+|++.+.
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~ 37 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSA 37 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCC
Confidence 467899999999999999999999999999999643
No 101
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.63 E-value=0.00014 Score=71.22 Aligned_cols=87 Identities=24% Similarity=0.392 Sum_probs=64.1
Q ss_pred cccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCC-CCCCCHHHHHHHHHHccCccEEEEcCCCccc---HHHH
Q 021802 58 GCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKG-PPVTPLHERMIMVNAVKWVDEVISDAPYAIT---KDFM 131 (307)
Q Consensus 58 G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg-~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t---~dfl 131 (307)
=-||++|.||+-+|++|+++ +|..++++.-| .. ..| +.+.+-.+|.++..+. ++|.|++ .|+..+ .++.
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~--qRgepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~f 82 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FT--QRGEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPYF 82 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecc-hh--hcCCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCchh
Confidence 35999999999999999984 35555555444 22 234 7899999999999997 9999999 887532 2332
Q ss_pred H----HHHHhcCccEEEEcCCC
Q 021802 132 K----KLFDEYNIDYIIHGDDP 149 (307)
Q Consensus 132 e----~ll~~l~~d~VV~GdD~ 149 (307)
. .++..+++|.|+.|-..
T Consensus 83 a~~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 83 ATRAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred hHHHHHHHHhcCCCeEEEeCCC
Confidence 1 25677889888887654
No 102
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=97.47 E-value=0.0054 Score=60.76 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=64.9
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc-Cc---cEEEE-cCCC
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK-WV---DEVIS-DAPY 124 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~--gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k-~V---D~Vv~-~~py 124 (307)
.+|+..=+||++|.||..++++|.+. .|.|++-+.--+ .| +-..+.+-|+++++.+. +. +.+++ -.|+
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~ 258 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPL 258 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecch
Confidence 35888999999999999999999997 677765443332 23 36788999999988742 22 23322 1333
Q ss_pred cc----cHHHHHH--HHHhcCccEEEEcCCCC
Q 021802 125 AI----TKDFMKK--LFDEYNIDYIIHGDDPC 150 (307)
Q Consensus 125 ~~----t~dfle~--ll~~l~~d~VV~GdD~~ 150 (307)
.. +.+.+.. +.+.|+|.++++|.|..
T Consensus 259 em~~agpreall~Aiir~nyG~th~IiG~Dha 290 (383)
T TIGR00339 259 AMRYAGPREAIWHAIIRKNYGATHFIVGRDHA 290 (383)
T ss_pred HhhcCCcHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 21 2345544 45669999999999975
No 103
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=97.43 E-value=0.00011 Score=68.24 Aligned_cols=49 Identities=33% Similarity=0.651 Sum_probs=41.5
Q ss_pred CCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCC-CEEEEEEeCcccccc
Q 021802 243 KGPGPDARIIYIDGAFDLFHAGHVEILRIARGLG-DFLLVGIHNDQTVRL 291 (307)
Q Consensus 243 ~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g-~~liVgv~~D~~v~~ 291 (307)
.+|..+-.++.+.|+||-+|.||--+|..|..++ |.|||||++|+-..+
T Consensus 136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k 185 (293)
T KOG3351|consen 136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK 185 (293)
T ss_pred ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH
Confidence 4444445789999999999999999999999886 899999999987754
No 104
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=97.38 E-value=0.00023 Score=69.14 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=35.9
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (307)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~ 285 (307)
++++++.+.|+||+||.||+.+.++|.+++|.++|+|-.
T Consensus 137 ~~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~ 175 (332)
T TIGR00124 137 PGNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVK 175 (332)
T ss_pred CCCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEe
Confidence 346999999999999999999999999999999999864
No 105
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.37 E-value=0.0002 Score=71.14 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=36.8
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
..+++++.|.||++|.||+.++++|.+.+|.|+|+|.++.
T Consensus 51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~ 90 (399)
T PRK08099 51 MKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDD 90 (399)
T ss_pred cCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccC
Confidence 3578999999999999999999999999999999998875
No 106
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.34 E-value=0.00033 Score=62.89 Aligned_cols=39 Identities=28% Similarity=0.224 Sum_probs=33.5
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCcc
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHNDQ 287 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D~ 287 (307)
+++++..|+||.+|.||+.++++|++.. |.+++..+...
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~ 44 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGP 44 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 5799999999999999999999999765 77877777554
No 107
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=97.12 E-value=0.00076 Score=59.82 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcccc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQTV 289 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~~v 289 (307)
+++..++-|.|-+||.||++.+++|.+.-|.|||+|-+|+.-
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~ 43 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQES 43 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccc
Confidence 367889999999999999999999999999999999998644
No 108
>PRK07143 hypothetical protein; Provisional
Probab=97.02 E-value=0.0011 Score=62.97 Aligned_cols=39 Identities=26% Similarity=0.583 Sum_probs=35.6
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
.+.+++-|.||-+|.||..+|++|++.++.++|...++.
T Consensus 15 ~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P 53 (279)
T PRK07143 15 EKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNP 53 (279)
T ss_pred CCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCCh
Confidence 567999999999999999999999999999999888763
No 109
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=96.78 E-value=0.0011 Score=63.72 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=31.2
Q ss_pred EEEEeCcccccCHHHHHHHHHHHhCCCEE---EEEEeCccc
Q 021802 251 IIYIDGAFDLFHAGHVEILRIARGLGDFL---LVGIHNDQT 288 (307)
Q Consensus 251 ~v~~~G~FDl~H~GHi~~L~~a~~~g~~l---iVgv~~D~~ 288 (307)
.|++.|+||.+|.||.++|++|++.++.+ .+.++-|..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~ 55 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPH 55 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 79999999999999999999999988654 345555543
No 110
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=96.69 E-value=0.0025 Score=56.33 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.8
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~ 285 (307)
+++++.+|+||++|.||+.+.++++ .-|.|++..+.
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~~-~~d~v~~vP~~ 37 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESLS-HFDLVLLVPSI 37 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHhh-cCCEEEEEECC
Confidence 3688999999999999999999964 56888877543
No 111
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.42 E-value=0.039 Score=52.93 Aligned_cols=127 Identities=21% Similarity=0.201 Sum_probs=82.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHH-ccCccEE---------EEcC
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNA-VKWVDEV---------ISDA 122 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~-~k~VD~V---------v~~~ 122 (307)
+.-+.=+=+++.+||+-|++||.+.||.|.+=|.++. .-.+|.++|.++++. .+..+.+ +-.+
T Consensus 147 IgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdYiISrA 219 (352)
T COG3053 147 IGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSGSDYIISRA 219 (352)
T ss_pred eEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecCCCeEEEec
Confidence 4555557899999999999999999999755444432 256899999999877 5555544 3333
Q ss_pred CCc---c-------------cHH-HHHHHHHhcCccEEEEcCCCCcCCCCCchH-----HHHHhC------CEEEEcCCC
Q 021802 123 PYA---I-------------TKD-FMKKLFDEYNIDYIIHGDDPCVLPDGTDAY-----ELAKKA------GRYKQIKRT 174 (307)
Q Consensus 123 py~---~-------------t~d-fle~ll~~l~~d~VV~GdD~~fg~~g~d~y-----~~lk~~------g~v~vv~rt 174 (307)
-|- + +.. |-+.+...+++..-.+|..+.--- ...| .++... ..+++++|.
T Consensus 220 TFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~v--T~~YNq~M~~~L~~~~~~~p~I~vvei~Rk 297 (352)
T COG3053 220 TFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRV--TAIYNQQMRYWLEDPTISAPPIEVVEIERK 297 (352)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHH--HHHHHHHHHHHHhccCCCCCceEEEEeehh
Confidence 320 0 011 222244557888888998864210 1223 234432 357788885
Q ss_pred ----CCCCHHHHHHHHHh
Q 021802 175 ----EGVSSTDIVGRMLL 188 (307)
Q Consensus 175 ----~~VSST~Ir~rIl~ 188 (307)
..||.|..|+.+..
T Consensus 298 ~~~~~~ISAS~VR~~l~~ 315 (352)
T COG3053 298 KYQEMPISASRVRQLLAK 315 (352)
T ss_pred hhcCCcccHHHHHHHHHh
Confidence 47999999998863
No 112
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=96.34 E-value=0.0051 Score=58.93 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=34.7
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeC
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHN 285 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~ 285 (307)
.++++-+-|+||++|.||+.++++|.+..|.++|.+-+
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~ 150 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVS 150 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEc
Confidence 46899999999999999999999999999988888865
No 113
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=95.88 E-value=0.024 Score=53.98 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=44.5
Q ss_pred hHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEE
Q 021802 42 LQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEV 118 (307)
Q Consensus 42 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~V 118 (307)
.+.++..+++ +-..-+-=-+|-||+.|+++|++.+|.++|.+.-+|.=...+. ...-+.+.=.+++++. +||.+
T Consensus 14 ~~~~~~~~~~--igfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~v 90 (280)
T PF02569_consen 14 IRAWRKAGKT--IGFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAV 90 (280)
T ss_dssp HHHHHHTTSS--EEEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEE
T ss_pred HHHHHHcCCe--EEEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEE
Confidence 3344444443 3333344457999999999999999999999877763211121 3445677888889997 99988
Q ss_pred EE
Q 021802 119 IS 120 (307)
Q Consensus 119 v~ 120 (307)
+.
T Consensus 91 F~ 92 (280)
T PF02569_consen 91 FA 92 (280)
T ss_dssp E-
T ss_pred Ec
Confidence 76
No 114
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=95.81 E-value=0.013 Score=54.54 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=31.8
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCc
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHND 286 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D 286 (307)
++|++..|+||..|.||+.+.++|.+.. |.+++.-+.+
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~ 61 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQ 61 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5799999999999999999999998753 7777766554
No 115
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=95.59 E-value=0.29 Score=44.96 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc----C
Q 021802 40 RWLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK----W 114 (307)
Q Consensus 40 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k----~ 114 (307)
++...+++.+.+. |++.=+=+++|.+|..++++|.+.+ +.|++-..-.+ .| +--++.+-|++..+.+. -
T Consensus 10 e~r~~~~~~gw~~-VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG~----~k-~~d~~~~~r~~~~~~~~~~y~p 83 (215)
T PF01747_consen 10 ETRELFKEKGWRR-VVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVGP----TK-PGDIPYEVRVRCYEALIDNYFP 83 (215)
T ss_dssp HHHHHHHHTT-SS-EEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBESB-----S-TTSCCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhcCCCe-EEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccCC----CC-cCCCCHHHHHHHHHHHHHHhCC
Confidence 4444555555443 6666669999999999999999986 76654321111 12 34577888888766632 1
Q ss_pred ccEEEEcCCCcc-------cHHHHHHHH-HhcCccEEEEcCCCCc
Q 021802 115 VDEVISDAPYAI-------TKDFMKKLF-DEYNIDYIIHGDDPCV 151 (307)
Q Consensus 115 VD~Vv~~~py~~-------t~dfle~ll-~~l~~d~VV~GdD~~f 151 (307)
-+.+++ .++.. .+.-+..++ +.++|..+++|.|+.-
T Consensus 84 ~~~v~l-~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg 127 (215)
T PF01747_consen 84 KNRVLL-SPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAG 127 (215)
T ss_dssp TTGEEE-EBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-
T ss_pred CCcEEE-eccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCC
Confidence 355655 33321 234445544 4599999999999863
No 116
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=95.41 E-value=0.72 Score=45.40 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=61.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--Cc--cEEEE-cCCC
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALG--DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--WV--DEVIS-DAPY 124 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~g--d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~V--D~Vv~-~~py 124 (307)
++|++.=+-+++|.||..+++.|.+.+ +.|++ ++ .+- .+.+-=++.+-|++..+.+. +. |.+++ ..|+
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll--~p--lvG-~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~ 231 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLL--HP--LVG-WTKPGDVPDEVRMRAYEALLEEYYLPERTVLAILPL 231 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEE--Ee--ccC-CCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 358888999999999999999999977 44443 22 111 11134577888888776642 33 66655 1232
Q ss_pred c-----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 021802 125 A-----ITKDFMKKLF-DEYNIDYIIHGDDPC 150 (307)
Q Consensus 125 ~-----~t~dfle~ll-~~l~~d~VV~GdD~~ 150 (307)
. ..+.-+..++ +.++|..+++|-|+.
T Consensus 232 ~mryAGPrEallhAiirkN~GcThfIvGrDHA 263 (353)
T cd00517 232 PMRYAGPREALWHAIIRKNYGATHFIVGRDHA 263 (353)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 2 1244455544 459999999999975
No 117
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=95.41 E-value=0.028 Score=50.92 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCC--CEEEEEEeCc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLG--DFLLVGIHND 286 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g--~~liVgv~~D 286 (307)
.+++++..|+||+.|.||+.+.++|.+.- |.|+.-.+..
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~ 42 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV 42 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 46899999999999999999999988653 5655544433
No 118
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=95.17 E-value=0.99 Score=45.06 Aligned_cols=93 Identities=18% Similarity=0.116 Sum_probs=62.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc----CccEEEEcCCCc--
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK----WVDEVISDAPYA-- 125 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k----~VD~Vv~~~py~-- 125 (307)
.+|++.=+-+++|.||..+++.|.+.+|-|++ |+ .+-..| +-=++.+-|++..+.+. --+.+++ .++-
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~d~lll--~p--lvG~~k-~~di~~~~r~~~~~~~~~~y~p~~~v~l-~~lp~~ 260 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIVDGLLL--NP--LVGETK-SGDIPAEVRMEAYEALLKNYYPKDRVLL-SVTPAA 260 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhcCeEEE--ec--CcCCCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEE-Eeccch
Confidence 46888889999999999999999999985554 22 111111 34577888988877742 1245544 3331
Q ss_pred -----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 021802 126 -----ITKDFMKKLF-DEYNIDYIIHGDDPC 150 (307)
Q Consensus 126 -----~t~dfle~ll-~~l~~d~VV~GdD~~ 150 (307)
..+.-+..++ +.++|..+++|-|+.
T Consensus 261 mryAGPrEa~lhAivrkN~GcTh~IvGrDHA 291 (391)
T PRK04149 261 MRYAGPREAIFHAIVRKNYGCTHFIVGRDHA 291 (391)
T ss_pred hcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 1244455544 459999999999975
No 119
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=95.01 E-value=0.024 Score=52.32 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhC
Q 021802 247 PDARIIYIDGAFDLFHAGHVEILRIARGL 275 (307)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~ 275 (307)
+...+.+..|+||+.|.||+.+.+.|++.
T Consensus 20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~ 48 (236)
T PLN02945 20 RTRVVLVATGSFNPPTYMHLRMFELARDA 48 (236)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHH
Confidence 33456667889999999999999888754
No 120
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=94.76 E-value=0.19 Score=47.72 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=51.0
Q ss_pred hhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhh-hcCC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802 44 WTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEII-ANKG--PPVTPLHERMIMVNAVKWVDEVIS 120 (307)
Q Consensus 44 ~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~-~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~ 120 (307)
.+++.+++ |-..=+--.+|-||+.|+++|++.+|.++|.+.-+|.=. .+-. ...-+.++=.++++.. +||.++.
T Consensus 16 ~~r~~gk~--Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF~ 92 (285)
T COG0414 16 ALRKEGKR--VGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVFA 92 (285)
T ss_pred HHHHcCCE--EEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence 44555553 555556667999999999999999999999886666311 1111 2334566666777886 9988876
No 121
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=94.68 E-value=0.14 Score=52.70 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=50.9
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChh-hhhcCC--CCCCCHHHHHHHHHHccCccEEEE
Q 021802 53 RVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAE-IIANKG--PPVTPLHERMIMVNAVKWVDEVIS 120 (307)
Q Consensus 53 ~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~-i~~~Kg--~pi~s~eER~~ll~~~k~VD~Vv~ 120 (307)
++-..-+-=.+|-||+.|+++|++.+|.++|.+.-+|. ...+.. ...-+.++=.+++++. +||.|+.
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~ 90 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFA 90 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEEC
Confidence 56667777789999999999999999999998866652 111111 3445678888889997 9998866
No 122
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=94.58 E-value=0.042 Score=47.81 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=20.3
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCC
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLG 276 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g 276 (307)
.++.+++-|.||-+|.||-.++++|.+.+
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a 32 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIA 32 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhh
Confidence 46889999999999999999999887553
No 123
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=93.97 E-value=1.3 Score=43.79 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=81.4
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc---cC-ccEEEEc-CCC
Q 021802 50 KPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV---KW-VDEVISD-APY 124 (307)
Q Consensus 50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~---k~-VD~Vv~~-~py 124 (307)
+-++|++.=++|++|.||-.+.+.|.+.+|.|+| |+ .+-..| +-=.+.+-|++..+.+ .+ =|.+++. .|+
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv--~p--lVG~tk-~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~ 256 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLV--HP--LVGATK-PGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPA 256 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEE--Ee--eecccc-CCCchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence 3457999999999999999999999999987554 11 111111 2224566666654442 13 3666662 222
Q ss_pred cc----c-HHHHHHHHH-hcCccEEEEcCCCCcCCCCCchHH---HHHh----CC-------EEEEcCC-----------
Q 021802 125 AI----T-KDFMKKLFD-EYNIDYIIHGDDPCVLPDGTDAYE---LAKK----AG-------RYKQIKR----------- 173 (307)
Q Consensus 125 ~~----t-~dfle~ll~-~l~~d~VV~GdD~~fg~~g~d~y~---~lk~----~g-------~v~vv~r----------- 173 (307)
.. + +.-+..++. .|+|...++|-|..--.+=-|.|+ +..+ .| .+..+++
T Consensus 257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~~cp 336 (397)
T COG2046 257 AMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTKTCP 336 (397)
T ss_pred HhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcccccCcEEEeccceeecccccCCcccccCC
Confidence 11 2 344455554 499999999999873212224443 3322 11 1222222
Q ss_pred -C----CCCCHHHHHHHHHhhhh
Q 021802 174 -T----EGVSSTDIVGRMLLCVR 191 (307)
Q Consensus 174 -t----~~VSST~Ir~rIl~~~~ 191 (307)
+ ..+|.|.+|++|....+
T Consensus 337 h~~~~~~~~SGt~lR~~Lr~G~~ 359 (397)
T COG2046 337 HGDEHHLHISGTKLREMLRAGVK 359 (397)
T ss_pred CCCcceEEEccHHHHHHHHcCCC
Confidence 1 25899999998877765
No 124
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=92.34 E-value=0.092 Score=49.86 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (307)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D 286 (307)
.+++|++|+ +---+|.||+.+.++||+.+|.+||.|.-+
T Consensus 20 ~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVN 58 (285)
T COG0414 20 EGKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVN 58 (285)
T ss_pred cCCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeC
Confidence 456788885 445689999999999999999999999755
No 125
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=91.71 E-value=0.14 Score=48.86 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=26.7
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D 286 (307)
+++|++|+= =--+|.||+.++++|++.+|.+||.|.-+
T Consensus 21 ~~~igfVPT-MGaLHeGHlsLi~~A~~~~d~vVVSIFVN 58 (280)
T PF02569_consen 21 GKTIGFVPT-MGALHEGHLSLIRRARAENDVVVVSIFVN 58 (280)
T ss_dssp TSSEEEEEE--SS--HHHHHHHHHHHHHSSEEEEEE---
T ss_pred CCeEEEECC-CchhhHHHHHHHHHHHhCCCEEEEEECcC
Confidence 467777741 22259999999999999999999999744
No 126
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.70 E-value=5.5 Score=41.61 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=61.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc---CccEEEEcCCCc---
Q 021802 52 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK---WVDEVISDAPYA--- 125 (307)
Q Consensus 52 ~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k---~VD~Vv~~~py~--- 125 (307)
.+|+..=+-+++|.+|..+++.|.+.+|..+ -+++ .+-..| +--++.+-|++..+.+. --|.+++ .+|-
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d~~l-ll~p--~~G~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l-~~~p~~m 261 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVGANL-LIHP--VVGMTK-PGDIDHFTRVRCYEALLDKYPPATTLL-SLLPLAM 261 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCeE-EEec--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEE-Eeccchh
Confidence 4588888999999999999999999887322 2333 111111 34577888888766632 2355544 3321
Q ss_pred ----ccHHHHHHHH-HhcCccEEEEcCCCC
Q 021802 126 ----ITKDFMKKLF-DEYNIDYIIHGDDPC 150 (307)
Q Consensus 126 ----~t~dfle~ll-~~l~~d~VV~GdD~~ 150 (307)
..+.-+..++ +.++|.+.++|-|+.
T Consensus 262 ryaGpreai~hAi~r~N~Gcth~ivGrdhA 291 (568)
T PRK05537 262 RMAGPREALWHAIIRRNYGCTHFIVGRDHA 291 (568)
T ss_pred cccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 1244455544 459999999999976
No 127
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=91.43 E-value=0.72 Score=42.67 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=41.4
Q ss_pred ccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCC---CCCCCHHHHHHHHHHccCccEEEE
Q 021802 59 CFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKG---PPVTPLHERMIMVNAVKWVDEVIS 120 (307)
Q Consensus 59 ~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg---~pi~s~eER~~ll~~~k~VD~Vv~ 120 (307)
+.--+|-||+.+++|+++..++.+|.+.-+|.-..... ...-+..+-...++++ +||-++.
T Consensus 31 TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvvfa 94 (283)
T KOG3042|consen 31 TMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVVFA 94 (283)
T ss_pred ccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEEEc
Confidence 33448999999999999999998888766663211111 1122334556778898 8887764
No 128
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=90.53 E-value=0.38 Score=45.91 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=32.2
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
+++++++. +..-+|.||..++++|++.++.+||.+....
T Consensus 21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P 59 (281)
T PRK00380 21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNP 59 (281)
T ss_pred CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCH
Confidence 56777775 5555999999999999999998999887663
No 129
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=89.58 E-value=0.074 Score=53.86 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=32.7
Q ss_pred cccceehcccCCCCCCCCCeEEEEeCcccccCHHHHHHHHHHHhCC
Q 021802 231 PTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRIARGLG 276 (307)
Q Consensus 231 ~t~~~i~~f~~~~~~~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g 276 (307)
|+...+.+|-.... .++++++.+|+||.+|.|||.+|.++...|
T Consensus 398 p~~~ev~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 398 ATLEKVLELLRASN--LNEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CCHHHHHHHHHhcC--CCcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 33334444544333 357899999999999999999999988665
No 130
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=88.90 E-value=0.35 Score=49.82 Aligned_cols=36 Identities=31% Similarity=0.558 Sum_probs=29.4
Q ss_pred eEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802 250 RIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (307)
Q Consensus 250 ~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D 286 (307)
+|++|+ +==-+|.||+.++++|++.+|.+||.|.-+
T Consensus 21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIFVN 56 (512)
T PRK13477 21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIFVN 56 (512)
T ss_pred cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccC
Confidence 667664 334589999999999999999999999543
No 131
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=87.83 E-value=0.67 Score=44.32 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.7
Q ss_pred CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
+++|++ +-|. +|.||..++++|++.++.+||.+....
T Consensus 21 g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP 59 (282)
T TIGR00018 21 GKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNP 59 (282)
T ss_pred CCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCCh
Confidence 456655 4677 999999999999999999999997663
No 132
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=87.60 E-value=0.69 Score=44.05 Aligned_cols=37 Identities=32% Similarity=0.542 Sum_probs=30.7
Q ss_pred CCeEEE--EeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 248 DARIIY--IDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 248 ~~~~v~--~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
+++|++ +-|. +|.||..++++|++.++.+||.+....
T Consensus 21 ~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP 59 (277)
T cd00560 21 GKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNP 59 (277)
T ss_pred CCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCCh
Confidence 455655 4566 999999999999999999999997764
No 133
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=86.61 E-value=8.2 Score=36.68 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=65.1
Q ss_pred hHHhHhhhcCCCCeEEEEecccCc-CCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--C
Q 021802 39 DRWLQWTRKKKKPVRVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W 114 (307)
Q Consensus 39 ~~~~~~~~~~~~~~~V~~~G~FD~-lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~ 114 (307)
.++.+..+......-++..+++.+ +|+|=.+.+++|++.| |-++| +| +|.||..++...|+ +
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv---pD-----------LP~ee~~~~~~~~~~~g 147 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV---PD-----------LPPEESDELLKAAEKHG 147 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe---CC-----------CChHHHHHHHHHHHHcC
Confidence 456666665545444888999999 8899999999999987 65553 34 44455554444433 8
Q ss_pred ccEEEEcCCCcccHHHHHHHHHhcCccEEEEcCCCCcCCCCC
Q 021802 115 VDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDPCVLPDGT 156 (307)
Q Consensus 115 VD~Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~~fg~~g~ 156 (307)
+|.+.+ ++.+++.+.++.+.+.-.--..+++-.-..|....
T Consensus 148 i~~I~l-vaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~ 188 (265)
T COG0159 148 IDPIFL-VAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNP 188 (265)
T ss_pred CcEEEE-eCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcc
Confidence 888888 55566677777765433222333444445554443
No 134
>PLN02660 pantoate--beta-alanine ligase
Probab=86.34 E-value=0.9 Score=43.49 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=30.3
Q ss_pred CCeEEEE--eCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 248 DARIIYI--DGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 248 ~~~~v~~--~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
+++|+++ -|. +|.||..++++|++.++.+||.+..+.
T Consensus 20 g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP 58 (284)
T PLN02660 20 GKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNP 58 (284)
T ss_pred CCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCCh
Confidence 4456554 566 999999999999999999999988664
No 135
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=83.80 E-value=0.87 Score=43.99 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.9
Q ss_pred CeEEEEeCcccccCHHHHHHHHHHHhC
Q 021802 249 ARIIYIDGAFDLFHAGHVEILRIARGL 275 (307)
Q Consensus 249 ~~~v~~~G~FDl~H~GHi~~L~~a~~~ 275 (307)
...+++-|.||=+|.||-.+|++|++.
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~ 41 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEA 41 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHH
Confidence 467899999999999999999988844
No 136
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=81.64 E-value=2.4 Score=39.34 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=33.4
Q ss_pred CCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCcc
Q 021802 248 DARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHNDQ 287 (307)
Q Consensus 248 ~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D~ 287 (307)
+++|.+++ +--.+|-||..+.++++++.++.+|.|.-+.
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP 61 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKENTYTVVSIFVNP 61 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhhCceEEEEEEech
Confidence 57888886 4567899999999999999999999997653
No 137
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.37 E-value=42 Score=31.52 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=55.2
Q ss_pred hHHhHhhhcCCCCeEEEEecccCc-CCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--C
Q 021802 39 DRWLQWTRKKKKPVRVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W 114 (307)
Q Consensus 39 ~~~~~~~~~~~~~~~V~~~G~FD~-lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~ 114 (307)
.+..+..+.+.....++..++|.+ +|+|=-+.++++++.| |-+++ +| ++.+|..+.++.|+ +
T Consensus 77 ~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii---pD-----------Lp~ee~~~~~~~~~~~g 142 (258)
T PRK13111 77 FELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII---PD-----------LPPEEAEELRAAAKKHG 142 (258)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE---CC-----------CCHHHHHHHHHHHHHcC
Confidence 344444442322223569999998 6669999999999987 55554 34 33466666665554 7
Q ss_pred ccEEEEcCCCcccHHHHHHHHHhcCccEEE
Q 021802 115 VDEVISDAPYAITKDFMKKLFDEYNIDYII 144 (307)
Q Consensus 115 VD~Vv~~~py~~t~dfle~ll~~l~~d~VV 144 (307)
++.|.+-.| +++++-++.+. +...++|.
T Consensus 143 l~~I~lvap-~t~~eri~~i~-~~s~gfIY 170 (258)
T PRK13111 143 LDLIFLVAP-TTTDERLKKIA-SHASGFVY 170 (258)
T ss_pred CcEEEEeCC-CCCHHHHHHHH-HhCCCcEE
Confidence 788875244 44556665543 34556553
No 138
>PLN02591 tryptophan synthase
Probab=65.64 E-value=1.2e+02 Score=28.52 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=51.7
Q ss_pred HHhHhhhcCCCCeEEEEecccCc-CCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--Cc
Q 021802 40 RWLQWTRKKKKPVRVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--WV 115 (307)
Q Consensus 40 ~~~~~~~~~~~~~~V~~~G~FD~-lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~V 115 (307)
++.+..++..+.+ ++..+++++ +|+|--+.+++|++.| |-+++ +| ++.||..+..+.|+ ++
T Consensus 68 ~~~~~~r~~~~~p-~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gvii---pD-----------LP~ee~~~~~~~~~~~gl 132 (250)
T PLN02591 68 SMLKEVAPQLSCP-IVLFTYYNPILKRGIDKFMATIKEAGVHGLVV---PD-----------LPLEETEALRAEAAKNGI 132 (250)
T ss_pred HHHHHHhcCCCCC-EEEEecccHHHHhHHHHHHHHHHHcCCCEEEe---CC-----------CCHHHHHHHHHHHHHcCC
Confidence 4445555443333 569999998 5669999999999987 55553 24 34466666665554 77
Q ss_pred cEEEEcCCCcccHHHHHHHH
Q 021802 116 DEVISDAPYAITKDFMKKLF 135 (307)
Q Consensus 116 D~Vv~~~py~~t~dfle~ll 135 (307)
+.+.+ ...+++++-++.+.
T Consensus 133 ~~I~l-v~Ptt~~~ri~~ia 151 (250)
T PLN02591 133 ELVLL-TTPTTPTERMKAIA 151 (250)
T ss_pred eEEEE-eCCCCCHHHHHHHH
Confidence 88877 44445566665544
No 139
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=61.74 E-value=28 Score=32.24 Aligned_cols=71 Identities=23% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCCeEEEEecccCcCCHHHHHHHHHHHHcC----Ce-EEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEE
Q 021802 49 KKPVRVYMDGCFDMMHYGHCNALRQARALG----DQ-LVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVIS 120 (307)
Q Consensus 49 ~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g----d~-LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~ 120 (307)
..+.-.++.|.|.+.-.+|+++++-|+..- .. ++=|+-+ |.-..+|.+-+.+...|+.+++..-.....+.
T Consensus 6 ~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~ 81 (234)
T KOG3199|consen 6 KTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVELATETSKWLM 81 (234)
T ss_pred cceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHhhhcccccee
Confidence 345556889999999999999999999742 33 4445544 21112444578888999999988433333333
No 140
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=55.69 E-value=15 Score=36.68 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=24.6
Q ss_pred EEEeCcccccCHHHHHHHHHHHhC--CCEEEE
Q 021802 252 IYIDGAFDLFHAGHVEILRIARGL--GDFLLV 281 (307)
Q Consensus 252 v~~~G~FDl~H~GHi~~L~~a~~~--g~~liV 281 (307)
|+.-=+||++|.||..+.+.|.+. +|.|++
T Consensus 186 Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll 217 (383)
T TIGR00339 186 VVAFQTRNPMHRAHEELTKRAARSLPNAGVLV 217 (383)
T ss_pred EEEeccCCCCchHHHHHHHHHHHHcCCCeEEE
Confidence 444789999999999999999986 675544
No 141
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=55.45 E-value=21 Score=34.77 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=35.2
Q ss_pred CCCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEEEeCc
Q 021802 246 GPDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVGIHND 286 (307)
Q Consensus 246 ~~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVgv~~D 286 (307)
.+++||..+--.-.+|-.||--+.++|.++||+|-+=|-++
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~e 182 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKE 182 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEec
Confidence 45789999999999999999999999999999976655443
No 142
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=55.00 E-value=7.9 Score=39.27 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=25.2
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcC
Q 021802 50 KPVRVYMDGCFDMMHYGHCNALRQARALG 78 (307)
Q Consensus 50 ~~~~V~~~G~FD~lH~GH~~lL~qAk~~g 78 (307)
..+.+++-||||.+|.||+.+|.++..-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 34458999999999999999999998765
No 143
>PRK00536 speE spermidine synthase; Provisional
Probab=49.38 E-value=27 Score=33.05 Aligned_cols=97 Identities=16% Similarity=0.000 Sum_probs=53.7
Q ss_pred HhHhhhcCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCChhh-hhcCC-CCCCCH---HHHH----HHHHH
Q 021802 41 WLQWTRKKKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEI-IANKG-PPVTPL---HERM----IMVNA 111 (307)
Q Consensus 41 ~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i-~~~Kg-~pi~s~---eER~----~ll~~ 111 (307)
.....-.-+.+++|+++|-.|| ..+|++.+.-. -++-|--|+.+ ...|. -|.+.. +.|. ...+.
T Consensus 63 vHppl~~h~~pk~VLIiGGGDG------g~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~ 135 (262)
T PRK00536 63 AHMGGCTKKELKEVLIVDGFDL------ELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL 135 (262)
T ss_pred HHHHHhhCCCCCeEEEEcCCch------HHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhc
Confidence 3334455667889999999997 46777777754 35556667753 23332 122111 1111 12221
Q ss_pred c-cCccEEEEcCCCcccHHHHHHHHHhcCccEEEEc
Q 021802 112 V-KWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHG 146 (307)
Q Consensus 112 ~-k~VD~Vv~~~py~~t~dfle~ll~~l~~d~VV~G 146 (307)
- ..-|.|+.|.. ++++|.+.+.+.++++.+++-
T Consensus 136 ~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 136 DIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEE
Confidence 1 34577777644 346676666566777755553
No 144
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=49.07 E-value=2.3e+02 Score=26.47 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=51.8
Q ss_pred HhHhhhcC-CCCeEEEEecccCc-CCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--Cc
Q 021802 41 WLQWTRKK-KKPVRVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--WV 115 (307)
Q Consensus 41 ~~~~~~~~-~~~~~V~~~G~FD~-lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~V 115 (307)
..+..++. .+.+ ++..+++++ +|+|=.+.++.+++.| +.+++ + |. +.+|..+.++.|+ ++
T Consensus 77 ~v~~ir~~~~~~p-lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgvii--p-Dl-----------p~ee~~~~~~~~~~~gl 141 (256)
T TIGR00262 77 LLKKVRQKHPNIP-IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLV--A-DL-----------PLEESGDLVEAAKKHGV 141 (256)
T ss_pred HHHHHHhcCCCCC-EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEE--C-CC-----------ChHHHHHHHHHHHHCCC
Confidence 34444443 2333 449999998 7779999999999987 54442 2 32 2345555555443 77
Q ss_pred cEEEEcCCCcccHHHHHHHHHhcC-ccEEEE
Q 021802 116 DEVISDAPYAITKDFMKKLFDEYN-IDYIIH 145 (307)
Q Consensus 116 D~Vv~~~py~~t~dfle~ll~~l~-~d~VV~ 145 (307)
+-+..-.| +++.+-++.+.+.-. +-|++-
T Consensus 142 ~~i~lv~P-~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 142 KPIFLVAP-NADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred cEEEEECC-CCCHHHHHHHHHhCCCCEEEEE
Confidence 77755244 345566655554432 445543
No 145
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=40.96 E-value=59 Score=30.70 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=46.5
Q ss_pred hHHhHhhhcCCCCeEEEEecccCcC-CHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--C
Q 021802 39 DRWLQWTRKKKKPVRVYMDGCFDMM-HYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--W 114 (307)
Q Consensus 39 ~~~~~~~~~~~~~~~V~~~G~FD~l-H~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~ 114 (307)
..+++..+.+.....++..++|+++ |+|=-+.+++|++.+ |-+++ +| ++.||+.++.+.|+ +
T Consensus 75 ~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi---pD-----------LP~ee~~~~~~~~~~~g 140 (259)
T PF00290_consen 75 FELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII---PD-----------LPPEESEELREAAKKHG 140 (259)
T ss_dssp HHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE---TT-----------SBGGGHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE---cC-----------CChHHHHHHHHHHHHcC
Confidence 4555666634444459999999985 689889999999886 44542 44 22344444444332 6
Q ss_pred ccEEEEcCCCcccHHHHHHHH
Q 021802 115 VDEVISDAPYAITKDFMKKLF 135 (307)
Q Consensus 115 VD~Vv~~~py~~t~dfle~ll 135 (307)
++-|.+ ...+++++-++.+.
T Consensus 141 l~~I~l-v~p~t~~~Ri~~i~ 160 (259)
T PF00290_consen 141 LDLIPL-VAPTTPEERIKKIA 160 (259)
T ss_dssp -EEEEE-EETTS-HHHHHHHH
T ss_pred CeEEEE-ECCCCCHHHHHHHH
Confidence 676655 33334455555543
No 146
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.82 E-value=3.3e+02 Score=25.66 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=49.8
Q ss_pred HHhHhhhcCCCCeEEEEecccCc-CCHHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc--Cc
Q 021802 40 RWLQWTRKKKKPVRVYMDGCFDM-MHYGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK--WV 115 (307)
Q Consensus 40 ~~~~~~~~~~~~~~V~~~G~FD~-lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k--~V 115 (307)
++....++..+.+ ++..+++++ +++|=-+.++.|++.| |-+++ +| ++.+|..+..+.|+ ++
T Consensus 81 ~~~~~~r~~~~~p-~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgvii---pD-----------LP~ee~~~~~~~~~~~gi 145 (263)
T CHL00200 81 SILSEVNGEIKAP-IVIFTYYNPVLHYGINKFIKKISQAGVKGLII---PD-----------LPYEESDYLISVCNLYNI 145 (263)
T ss_pred HHHHHHhcCCCCC-EEEEecccHHHHhCHHHHHHHHHHcCCeEEEe---cC-----------CCHHHHHHHHHHHHHcCC
Confidence 3444444443433 569999998 5559999999999987 55553 34 22355554444443 78
Q ss_pred cEEEEcCCCcccHHHHHHHHH
Q 021802 116 DEVISDAPYAITKDFMKKLFD 136 (307)
Q Consensus 116 D~Vv~~~py~~t~dfle~ll~ 136 (307)
+-+.. .+.+++++-++.+.+
T Consensus 146 ~~I~l-v~PtT~~eri~~i~~ 165 (263)
T CHL00200 146 ELILL-IAPTSSKSRIQKIAR 165 (263)
T ss_pred CEEEE-ECCCCCHHHHHHHHH
Confidence 88877 444455666666544
No 147
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.96 E-value=1.2e+02 Score=29.96 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=15.7
Q ss_pred CcCCHHHHHH-HHHHHHc-CCeEEEEEeCC
Q 021802 61 DMMHYGHCNA-LRQARAL-GDQLVVGVVSD 88 (307)
Q Consensus 61 D~lH~GH~~l-L~qAk~~-gd~LiVgV~sD 88 (307)
||+|+|-..+ +..|+++ +...+||+...
T Consensus 219 DGVHLgq~dl~~~~aR~llg~~~iIG~S~H 248 (347)
T PRK02615 219 DGVHLGQEDLPLAVARQLLGPEKIIGRSTT 248 (347)
T ss_pred CEEEeChhhcCHHHHHHhcCCCCEEEEecC
Confidence 6777775443 4566653 34445566443
No 148
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=36.00 E-value=1.1e+02 Score=27.93 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=13.7
Q ss_pred CcCCHHHH-HHHHHHHHc-CCeEEEEEeCC
Q 021802 61 DMMHYGHC-NALRQARAL-GDQLVVGVVSD 88 (307)
Q Consensus 61 D~lH~GH~-~lL~qAk~~-gd~LiVgV~sD 88 (307)
|++|.|-- -.+..|+++ +..++||+...
T Consensus 83 dGVHlGq~D~~~~~ar~~~~~~~iIG~S~h 112 (211)
T COG0352 83 DGVHLGQDDMPLAEARELLGPGLIIGLSTH 112 (211)
T ss_pred CEEEcCCcccchHHHHHhcCCCCEEEeecC
Confidence 45666643 233444443 34556665443
No 149
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=32.31 E-value=31 Score=32.80 Aligned_cols=58 Identities=26% Similarity=0.402 Sum_probs=40.5
Q ss_pred ccCcCC------------HHHHHHHH----HHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCcc
Q 021802 59 CFDMMH------------YGHCNALR----QARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVD 116 (307)
Q Consensus 59 ~FD~lH------------~GH~~lL~----qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD 116 (307)
+||+-| -|...++. .|.+.| |-|++=+|+||+-....++..++.++=.++++.++.++
T Consensus 187 i~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i~ 261 (264)
T PRK05198 187 IFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQLKAID 261 (264)
T ss_pred EEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHHH
Confidence 489999 57777664 344444 88999999999755555566777777777777765443
No 150
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=31.90 E-value=1.4e+02 Score=21.56 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCCeEEEEeCcccccCHHHHHHHHHHHhCCCEEEEE
Q 021802 247 PDARIIYIDGAFDLFHAGHVEILRIARGLGDFLLVG 282 (307)
Q Consensus 247 ~~~~~v~~~G~FDl~H~GHi~~L~~a~~~g~~liVg 282 (307)
++..+++++..+.+-++-.++.|.+.-+.|..|++.
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 457889999998988888999998888889888874
No 151
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=30.02 E-value=4.6e+02 Score=25.01 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=28.9
Q ss_pred cCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEeCChhh
Q 021802 47 KKKKPVRVYMDGCFDMMHYGHCNALRQARALG-DQLVVGVVSDAEI 91 (307)
Q Consensus 47 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~~g-d~LiVgV~sD~~i 91 (307)
..+.+++|+++|--|| ..+|++.+.. .+-++.|--|+.+
T Consensus 73 ah~~pk~VLiiGgGdG------~tlRevlkh~~ve~i~~VEID~~V 112 (282)
T COG0421 73 AHPNPKRVLIIGGGDG------GTLREVLKHLPVERITMVEIDPAV 112 (282)
T ss_pred hCCCCCeEEEECCCcc------HHHHHHHhcCCcceEEEEEcCHHH
Confidence 3444568999999998 5788888775 4567777778864
No 152
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=27.86 E-value=3.9e+02 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=7.3
Q ss_pred CCCCHHHHHHHHHH
Q 021802 98 PVTPLHERMIMVNA 111 (307)
Q Consensus 98 pi~s~eER~~ll~~ 111 (307)
+.+|.+||.++++.
T Consensus 47 ~~Lt~eEr~~l~~~ 60 (279)
T cd00953 47 PSLSFQEKLELLKA 60 (279)
T ss_pred ccCCHHHHHHHHHH
Confidence 44555555555543
No 153
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=27.55 E-value=3.9e+02 Score=22.75 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEc--CC---Ccc--cHHHHHHHH
Q 021802 63 MHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISD--AP---YAI--TKDFMKKLF 135 (307)
Q Consensus 63 lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~--~p---y~~--t~dfle~ll 135 (307)
++.--.+++..|++++..+.+.+.-++. .++ .+.+.++ ++|+++.- .+ |+. ..+-+.+++
T Consensus 13 l~~~s~el~~~A~~l~~~v~~v~~G~~~-----------~~~-~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~al~~~i 79 (168)
T cd01715 13 LRELTLEAVTAARKLGGEVTALVIGSGA-----------EAV-AAALKAY-GADKVLVAEDPALAHYLAEPYAPALVALA 79 (168)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEECCCh-----------HHH-HHHHHhc-CCCEEEEecChhhcccChHHHHHHHHHHH
Confidence 4445568899999987555444432210 112 2223344 99999762 11 221 123345566
Q ss_pred HhcCccEEEEcCCC
Q 021802 136 DEYNIDYIIHGDDP 149 (307)
Q Consensus 136 ~~l~~d~VV~GdD~ 149 (307)
++++++.|+.|...
T Consensus 80 ~~~~p~~Vl~~~t~ 93 (168)
T cd01715 80 KKEKPSHILAGATS 93 (168)
T ss_pred HhcCCCEEEECCCc
Confidence 77899999999875
No 154
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=26.82 E-value=2.4e+02 Score=30.22 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=30.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEeCCh
Q 021802 51 PVRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDA 89 (307)
Q Consensus 51 ~~~V~~~G~FD~lH~GH~~lL~qAk~~gd~LiVgV~sD~ 89 (307)
.+.+-++|-.=++|.|=..+++.+-...+.+++.+.++.
T Consensus 446 k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~ 484 (640)
T COG4231 446 KKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRT 484 (640)
T ss_pred CceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccc
Confidence 456888999999999988877777777777777665544
No 155
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.56 E-value=42 Score=32.25 Aligned_cols=61 Identities=26% Similarity=0.444 Sum_probs=43.4
Q ss_pred ccCcCC------------HHHHHHH----HHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEE
Q 021802 59 CFDMMH------------YGHCNAL----RQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVI 119 (307)
Q Consensus 59 ~FD~lH------------~GH~~lL----~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv 119 (307)
+||+-| -|...++ +.|.+.| |-+++=+|+||+-....++..++.++=.++++.++-++.++
T Consensus 195 i~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~~~l~~i~~~~ 272 (281)
T PRK12457 195 IFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFLSQVKALDDLV 272 (281)
T ss_pred EEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccccCHHHHHHHHHHHHHHHHHH
Confidence 489999 4766665 3444454 88999999999765556677788887777787775554443
No 156
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=25.86 E-value=2.6e+02 Score=23.39 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCccEEEEcCCCCcC-CCCC------chHHHHHhC--CEEEEcCCCCCCCHHHHHHHHHh
Q 021802 129 DFMKKLFDEYNIDYIIHGDDPCVL-PDGT------DAYELAKKA--GRYKQIKRTEGVSSTDIVGRMLL 188 (307)
Q Consensus 129 dfle~ll~~l~~d~VV~GdD~~fg-~~g~------d~y~~lk~~--g~v~vv~rt~~VSST~Ir~rIl~ 188 (307)
+.+.+++++++++.||+|-..... ..+. .-.+.++.. ..+..+ .|+.||..-.+++..
T Consensus 38 ~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~--DEr~TT~~A~~~l~~ 104 (130)
T TIGR00250 38 SRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLW--DERLSTVEAESGLFA 104 (130)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEE--cCCcCHHHHHHHHHH
Confidence 456667778888889888665532 1111 001122221 123333 367888888777764
No 157
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.53 E-value=6.1e+02 Score=24.92 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHHHHHHHhcCccEEEEcC
Q 021802 68 CNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGD 147 (307)
Q Consensus 68 ~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfle~ll~~l~~d~VV~Gd 147 (307)
.++++.|.+.+.+++|.++.-.. .. .+-..++=+..+..+ +||.|+.+.|. +-.++.+..|+.=+|..
T Consensus 52 ~e~i~~ah~~gkk~~V~~N~~~~--~~---~~~~~~~~l~~l~e~-GvDaviv~Dpg------~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 52 AEAVELAHSAGKKVYVAVNTLLH--ND---ELETLERYLDRLVEL-GVDAVIVADPG------LIMLARERGPDLPIHVS 119 (347)
T ss_pred HHHHHHHHHcCCeEEEEeccccc--cc---hhhHHHHHHHHHHHc-CCCEEEEcCHH------HHHHHHHhCCCCcEEEe
Confidence 34555666667778887765421 00 011112223334455 99999996652 22344555667666665
Q ss_pred CCCcCCCCCchHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHhh
Q 021802 148 DPCVLPDGTDAYELAKKAG-RYKQIKRTEGVSSTDIVGRMLLC 189 (307)
Q Consensus 148 D~~fg~~g~d~y~~lk~~g-~v~vv~rt~~VSST~Ir~rIl~~ 189 (307)
-...-.+.. ..+..++.| .-.+.+| -.|-.+|++-+.+.
T Consensus 120 ~q~~v~N~~-~~~f~~~~G~~rvVl~r--Els~~ei~~i~~~~ 159 (347)
T COG0826 120 TQANVTNAE-TAKFWKELGAKRVVLPR--ELSLEEIKEIKEQT 159 (347)
T ss_pred eeEecCCHH-HHHHHHHcCCEEEEeCc--cCCHHHHHHHHHhC
Confidence 555444433 234555655 3333444 67999988766554
No 158
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.46 E-value=3.8e+02 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=11.6
Q ss_pred HhcCccEEEEcCCCCcCCCCCchHH
Q 021802 136 DEYNIDYIIHGDDPCVLPDGTDAYE 160 (307)
Q Consensus 136 ~~l~~d~VV~GdD~~fg~~g~d~y~ 160 (307)
++.++|.+++-..+.+-+..++.|+
T Consensus 96 ~~~Gad~il~v~PyY~k~~~~gl~~ 120 (299)
T COG0329 96 EKLGADGILVVPPYYNKPSQEGLYA 120 (299)
T ss_pred HhcCCCEEEEeCCCCcCCChHHHHH
Confidence 4455555555544444333333443
No 159
>PLN02428 lipoic acid synthase
Probab=25.13 E-value=3.2e+02 Score=27.01 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcc--CccEEEEc------------CCCcccHHHH--HHHHHhcCccEEEEcCCCC
Q 021802 101 PLHERMIMVNAVK--WVDEVISD------------APYAITKDFM--KKLFDEYNIDYIIHGDDPC 150 (307)
Q Consensus 101 s~eER~~ll~~~k--~VD~Vv~~------------~py~~t~dfl--e~ll~~l~~d~VV~GdD~~ 150 (307)
+.+|+.++++.++ +||.+.++ .+|..+++|- +++-.++++.+|..|.--+
T Consensus 260 T~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 260 TDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred CHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 3567777665544 56666552 1122234442 2333446677777775444
No 160
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=24.60 E-value=42 Score=32.38 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=43.9
Q ss_pred ccCcCCH-----------------HHHHHHH----HHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCcc
Q 021802 59 CFDMMHY-----------------GHCNALR----QARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVD 116 (307)
Q Consensus 59 ~FD~lH~-----------------GH~~lL~----qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD 116 (307)
+||+-|. |-.+++. .|.+.| |-|++=+|+||+-....++...+.++=.++++.++-++
T Consensus 193 I~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEvHpdP~~AlsDg~q~l~~~~l~~ll~~l~~i~ 272 (290)
T PLN03033 193 VADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAIA 272 (290)
T ss_pred EEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccCcCHHHHHHHHHHHHHHH
Confidence 4899994 7666653 444444 88999999999765556677788887778888876554
Q ss_pred EEEE
Q 021802 117 EVIS 120 (307)
Q Consensus 117 ~Vv~ 120 (307)
.++-
T Consensus 273 ~~~~ 276 (290)
T PLN03033 273 RVTK 276 (290)
T ss_pred HHHh
Confidence 4443
No 161
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=24.36 E-value=1.1e+02 Score=30.18 Aligned_cols=44 Identities=20% Similarity=0.543 Sum_probs=33.7
Q ss_pred HHHHHHHHHHccCccEEEEcCCCcccHHHHHHHHHhcCccEEEEcCCC
Q 021802 102 LHERMIMVNAVKWVDEVISDAPYAITKDFMKKLFDEYNIDYIIHGDDP 149 (307)
Q Consensus 102 ~eER~~ll~~~k~VD~Vv~~~py~~t~dfle~ll~~l~~d~VV~GdD~ 149 (307)
.+|=.+++. -.|.||-+.||+.-.||+..|+ +++-+++|+|.--
T Consensus 126 S~E~i~Ll~---eADIVVTNPPFSLFrEyv~~Li-~~~KkFlIIGN~N 169 (336)
T PF13651_consen 126 SDECIELLK---EADIVVTNPPFSLFREYVAQLI-EYDKKFLIIGNIN 169 (336)
T ss_pred cHHHHHHHh---cCCEEEeCCCcHHHHHHHHHHH-HhCCCEEEEeccc
Confidence 355555554 5799999999987788997765 5899999999753
No 162
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=24.20 E-value=3.5e+02 Score=25.44 Aligned_cols=81 Identities=14% Similarity=-0.010 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHc-cCcc---EEEEcCCCcccHHHHH--HHHHh
Q 021802 65 YGHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAV-KWVD---EVISDAPYAITKDFMK--KLFDE 137 (307)
Q Consensus 65 ~GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~-k~VD---~Vv~~~py~~t~dfle--~ll~~ 137 (307)
-+..++++...+.| +-+++.=++-+ -+.+|.+||.++++.. +.++ .|+.+...+ +.+.++ +..++
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~GstGE-------~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~-t~~~i~~a~~a~~ 92 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTGE-------FFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYG-TATAIAYAQAAEK 92 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCCEEEecCCC-HHHHHHHHHHHHH
Confidence 45666777766665 44443222222 3668888888887752 2221 123434332 333333 23355
Q ss_pred cCccEEEEcCCCCcCC
Q 021802 138 YNIDYIIHGDDPCVLP 153 (307)
Q Consensus 138 l~~d~VV~GdD~~fg~ 153 (307)
.++|.+++-..+.+..
T Consensus 93 ~Gad~v~~~pP~y~~~ 108 (289)
T cd00951 93 AGADGILLLPPYLTEA 108 (289)
T ss_pred hCCCEEEECCCCCCCC
Confidence 7888888876655433
No 163
>PRK08999 hypothetical protein; Provisional
Probab=22.93 E-value=2.1e+02 Score=26.86 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=9.1
Q ss_pred hcCccEEEEcCCCC
Q 021802 137 EYNIDYIIHGDDPC 150 (307)
Q Consensus 137 ~l~~d~VV~GdD~~ 150 (307)
+.++||+..|.=|.
T Consensus 244 ~~~~dyi~~gpvf~ 257 (312)
T PRK08999 244 RLGVDFAVLSPVQP 257 (312)
T ss_pred hcCCCEEEECCCcC
Confidence 45677777776553
No 164
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=22.73 E-value=45 Score=31.63 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=39.3
Q ss_pred ccCcCCH------------HHHHHHH----HHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCc
Q 021802 59 CFDMMHY------------GHCNALR----QARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWV 115 (307)
Q Consensus 59 ~FD~lH~------------GH~~lL~----qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~V 115 (307)
+||+-|. |-..++. .|...| |-|++=+|+||.-....++..++.++=.++++.++-+
T Consensus 179 i~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i 252 (258)
T TIGR01362 179 IFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKLLAI 252 (258)
T ss_pred EEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHH
Confidence 4899994 6666553 344444 8899999999975555556677777777777776443
No 165
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=22.69 E-value=4.9e+02 Score=22.26 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHcC---CeEEEEEeCChhhhhcCCCCCCCHHHHH-HHHHHccCccEEEEc--C---CCccc--HHHH
Q 021802 63 MHYGHCNALRQARALG---DQLVVGVVSDAEIIANKGPPVTPLHERM-IMVNAVKWVDEVISD--A---PYAIT--KDFM 131 (307)
Q Consensus 63 lH~GH~~lL~qAk~~g---d~LiVgV~sD~~i~~~Kg~pi~s~eER~-~ll~~~k~VD~Vv~~--~---py~~t--~dfl 131 (307)
+..--.+++..|++++ ..+.+.+.-.+ .++-. +....+ ++|+++.- . .|+.. -+-+
T Consensus 17 l~~~~~e~l~~A~~l~~~~~~v~~v~~G~~------------~~~~~~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~~l 83 (181)
T cd01985 17 LNPLDLEAVEAALRLKEYGGEVTALVIGPP------------AAEVALREALAM-GADKVLLVEDPALAGYDPEATAKAL 83 (181)
T ss_pred cCHhhHHHHHHHHHHhhcCCeEEEEEECCh------------HHHHHHHHHHHh-CCCEEEEEecCcccCCChHHHHHHH
Confidence 4555678999999987 45443332221 11111 223344 99999762 1 12211 2345
Q ss_pred HHHHHhcCccEEEEcCCCC
Q 021802 132 KKLFDEYNIDYIIHGDDPC 150 (307)
Q Consensus 132 e~ll~~l~~d~VV~GdD~~ 150 (307)
.+++++.+++.|+.|....
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 84 AALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHhCCCEEEECCccc
Confidence 5566778999999998765
No 166
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=21.74 E-value=2.9e+02 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=16.0
Q ss_pred cCcCCHHHH-HHHHHHHHc-CCeEEEEEe
Q 021802 60 FDMMHYGHC-NALRQARAL-GDQLVVGVV 86 (307)
Q Consensus 60 FD~lH~GH~-~lL~qAk~~-gd~LiVgV~ 86 (307)
-||+|+|.- .-+..+++. +...++|+.
T Consensus 88 adGVHLg~~d~~~~~~r~~~~~~~iiG~s 116 (221)
T PRK06512 88 ADGLHIEGNLAALAEAIEKHAPKMIVGFG 116 (221)
T ss_pred CCEEEECccccCHHHHHHhcCCCCEEEec
Confidence 468888843 235566643 455677774
No 167
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.57 E-value=2.2e+02 Score=27.83 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=48.2
Q ss_pred CcCCHHHHHHHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcc-------c-HHHH-
Q 021802 61 DMMHYGHCNALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAI-------T-KDFM- 131 (307)
Q Consensus 61 D~lH~GH~~lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~-------t-~dfl- 131 (307)
|+-|.+. +...+|.+..+.-+|.=|+++.......+.+. ++.++.+..-.+|=.+..-..|.. + .+++
T Consensus 166 DlSH~s~-kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~--D~qlkaI~~~gGvIgv~~~~~fl~~~~~~~atldd~v~ 242 (313)
T COG2355 166 DLSHLSD-KTFWDVLDLSKAPVVASHSNARALVDHPRNLS--DEQLKAIAETGGVIGVNFIPAFLRPGGAARATLDDLVR 242 (313)
T ss_pred EecccCC-ccHHHHHhccCCceEEecCCchhccCCCCCCC--HHHHHHHHhcCCEEEEEeehhhccCCCCCCCCHHHHHH
Confidence 5555554 23333444444456556776643211113333 444555555567644444233322 2 2333
Q ss_pred --HHHHHhcCccEEEEcCCCCcCCC
Q 021802 132 --KKLFDEYNIDYIIHGDDPCVLPD 154 (307)
Q Consensus 132 --e~ll~~l~~d~VV~GdD~~fg~~ 154 (307)
+.+.+..+.|.|..|.||..+..
T Consensus 243 hI~h~v~~~G~dhVglGsDf~g~~~ 267 (313)
T COG2355 243 HIDHFVELVGIDHVGLGSDFDGGTG 267 (313)
T ss_pred HHHHHHHhcCcceeEecccccCCCC
Confidence 44667789999999999985433
No 168
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.46 E-value=5.4e+02 Score=23.95 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcC-CeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHcc-Ccc---EEEEcCCCcccHHHHHH--HHHhc
Q 021802 66 GHCNALRQARALG-DQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVK-WVD---EVISDAPYAITKDFMKK--LFDEY 138 (307)
Q Consensus 66 GH~~lL~qAk~~g-d~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k-~VD---~Vv~~~py~~t~dfle~--ll~~l 138 (307)
+-.++++...+.| +-+++.=++-+ -+.+|.+||.++++... -++ .++.+..-.-+.+-++. ..++.
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE-------~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~ 95 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGE-------SPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKA 95 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCc-------cccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHc
Confidence 4455555555554 33433211222 35677778877766521 111 12332221112333321 33557
Q ss_pred CccEEEEcCCCCcCC
Q 021802 139 NIDYIIHGDDPCVLP 153 (307)
Q Consensus 139 ~~d~VV~GdD~~fg~ 153 (307)
++|.+++-..+.+..
T Consensus 96 G~d~v~~~pP~~~~~ 110 (292)
T PRK03170 96 GADGALVVTPYYNKP 110 (292)
T ss_pred CCCEEEECCCcCCCC
Confidence 777777766554433
No 169
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=21.40 E-value=6.4e+02 Score=23.11 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=49.0
Q ss_pred EEEecccC-cCCHHHHH-HHHHHHHcCCeEEEEEeCChhhhhcCCCCCCCHHHHHHHHHHccCccEEEEcCCCcccHHHH
Q 021802 54 VYMDGCFD-MMHYGHCN-ALRQARALGDQLVVGVVSDAEIIANKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITKDFM 131 (307)
Q Consensus 54 V~~~G~FD-~lH~GH~~-lL~qAk~~gd~LiVgV~sD~~i~~~Kg~pi~s~eER~~ll~~~k~VD~Vv~~~py~~t~dfl 131 (307)
+++.|.+| -+.+-.+. +++..++.+..+.++-+.+.......+ .......-...++...+....+.+.| .++.+
T Consensus 110 ~Vv~g~~~~~~~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP---~p~~~ 185 (257)
T TIGR01458 110 CVVMGLAPEHFSYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDG-LALDVGPFVTALEYATDTKATVVGKP---SKTFF 185 (257)
T ss_pred EEEEecccCccCHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCC-CCCCchHHHHHHHHHhCCCceeecCC---CHHHH
Confidence 66777766 34443333 333333334445665555653322122 23344555556665446555555565 34566
Q ss_pred HHHHHhcC---ccEEEEcCCCC
Q 021802 132 KKLFDEYN---IDYIIHGDDPC 150 (307)
Q Consensus 132 e~ll~~l~---~d~VV~GdD~~ 150 (307)
+..+++++ -+.+++||+..
T Consensus 186 ~~~~~~~~~~~~~~~~vGD~~~ 207 (257)
T TIGR01458 186 LEALRATGCEPEEAVMIGDDCR 207 (257)
T ss_pred HHHHHHhCCChhhEEEECCCcH
Confidence 66666665 33889998753
No 170
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.46 E-value=5.4e+02 Score=23.75 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=7.8
Q ss_pred CCCCHHHHHHHHHH
Q 021802 98 PVTPLHERMIMVNA 111 (307)
Q Consensus 98 pi~s~eER~~ll~~ 111 (307)
+.+|.+||.++++.
T Consensus 48 ~~lt~~Er~~l~~~ 61 (284)
T cd00950 48 PTLSDEEHEAVIEA 61 (284)
T ss_pred hhCCHHHHHHHHHH
Confidence 44556666665544
Done!