BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021804
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
           Sulfolobus Solfataricus P2
          Length = 168

 Score = 35.8 bits (81), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 207 ICNMTVRKERRRRGIGWHLLKASEELISQMSSSKEVYLHCRMIDEAPFNMYTKAGYSVVK 266
           + ++ V +E RR+GI   LL+AS + +    +++E+YL  R+ +     +Y K  +  VK
Sbjct: 90  VVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYEKLNFKKVK 149

Query: 267 T 267
            
Sbjct: 150 V 150


>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
           Peptide Fragment And Coa
 pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
           Peptide Fragment And Coa
 pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
           Peptide Fragment And Coa
          Length = 169

 Score = 35.8 bits (81), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 206 YICNMTVRKERRRRGIGWHLLKASEELISQMSSSKEVYLHCRMIDEAPFNMYTKAGYSVV 265
           YI  +      RR GIG  +L     +  +  +   +YLH ++ +E+  + Y K G+ ++
Sbjct: 73  YIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEII 132

Query: 266 KT 267
           +T
Sbjct: 133 ET 134


>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
 pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
 pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
 pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
 pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
 pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
          Length = 170

 Score = 34.3 bits (77), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 206 YICNMTVRKERRRRGIGWHLLKASEELISQMSSSKEVYLHCRMIDEAPFNMYTKAGYSVV 265
           YI  +      RR GIG   L     +  +  +   +YLH ++ +E+  + Y K G+ ++
Sbjct: 74  YIXTLGCLAPYRRLGIGTKXLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEII 133

Query: 266 KT 267
           +T
Sbjct: 134 ET 135


>pdb|2QP2|A Chain A, Structure Of A Macpf/perforin-like Protein
          Length = 511

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 112 EEMDRTVSLLAESFSESMLLPVGYNKLL 139
           E+  + + LL  S   SM+LP GYN +L
Sbjct: 459 EKAIKDIQLLCSSCGSSMILPYGYNDVL 486


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,985,103
Number of Sequences: 62578
Number of extensions: 292777
Number of successful extensions: 493
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 6
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)