BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021805
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
           Thermus Thermophilus Hb8
 pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
 pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
           From Thermus Thermophilus Hb8
 pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
           From Thermus Thermophilus Hb8
          Length = 182

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 15/117 (12%)

Query: 101 MLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETY 160
           +LL+++L + V +  +R+             TG+++   V+  GP  A  +L  +E  T 
Sbjct: 7   ILLEEILSEPVRLVKERV----------RTHTGREL-TYVYRPGPVAASFVLPVTERGT- 54

Query: 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAF 217
           A+L  Q R PTG+ +LE+PAG +D+ +      A RE+ EE G +   E +I L +F
Sbjct: 55  ALLVRQYRHPTGKFLLEVPAGKVDEGETP-EAAARRELREEVGAE--AETLIPLPSF 108


>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
 pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
           Escherichia Coli K-1
          Length = 153

 Score = 37.7 bits (86), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           P V V  ++ +EG+ + ++ E +    G+ +   PAG L+ D+   V  A RE+ EETGI
Sbjct: 4   PHVTVACVVHAEGK-FLVVEETI---NGKALWNQPAGHLEADE-TLVEAAARELWEETGI 58

Query: 205 QLKLEDMIDLTAFLYP 220
             + +  I +  ++ P
Sbjct: 59  SAQPQHFIRMHQWIAP 74


>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5
 pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5
 pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5
 pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5
          Length = 227

 Score = 37.4 bits (85), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 162 ILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
           +L +Q R P G   +E PAG++DD +      A+RE+EEETG +
Sbjct: 78  VLVKQFRPPMGGYCIEFPAGLIDDGETP-EAAALRELEEETGYK 120


>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5 In Complex With Magnesium And Ampcpr
 pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5 In Complex With Magnesium And Ampcpr
          Length = 210

 Score = 37.4 bits (85), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 162 ILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
           +L +Q R P G   +E PAG++DD +      A+RE+EEETG +
Sbjct: 78  VLVKQFRPPMGGYCIEFPAGLIDDGETPEAA-ALRELEEETGYK 120


>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
           Nudt5 In Complex With Magnesium And Adp-ribose
 pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
           Nudt5 In Complex With Magnesium And Adp-ribose
 pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5 In Complex With Magnesium And Amp
 pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
           Nudt5 In Complex With Magnesium And Amp
          Length = 212

 Score = 37.4 bits (85), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 162 ILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
           +L +Q R P G   +E PAG++DD +      A+RE+EEETG +
Sbjct: 80  VLVKQFRPPMGGYCIEFPAGLIDDGETPEAA-ALRELEEETGYK 122


>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
           And Manganese
 pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
           And Manganese
 pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
 pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
          Length = 195

 Score = 37.4 bits (85), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 162 ILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
           +L +Q R P G   +E PAG++DD +      A+RE+EEETG +
Sbjct: 65  VLVKQFRPPMGGYCIEFPAGLIDDGETPEAA-ALRELEEETGYK 107


>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
           And Manganese
 pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
           And Manganese
          Length = 196

 Score = 37.4 bits (85), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 162 ILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
           +L +Q R P G   +E PAG++DD +      A+RE+EEETG +
Sbjct: 66  VLVKQFRPPMGGYCIEFPAGLIDDGETPEAA-ALRELEEETGYK 108


>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
           Pyrophosphatase
 pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
           Complexed With Adp-Ribose
 pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
           Complexed With Adp-Ribose And Gd
 pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
           Pyrophosphatase Complexed With Zn
 pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
           Pyrophosphatase Complexed With Amp And Mg
 pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
           Pyrophosphatase Complexed With Ribose-5'-Phosphate And
           Zn
 pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
           Pyrophosphatase Complexed With Adp-Ribose And Zn
          Length = 170

 Score = 36.6 bits (83), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 17/97 (17%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           PAVAV+ L +       +   Q+R   G   LE+PAG+++  + D +  A RE+ EETG+
Sbjct: 35  PAVAVIALREGR----MLFVRQMRPAVGLAPLEIPAGLIEPGE-DPLEAARRELAEETGL 89

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
                   DLT          +F S G  DE+  +FL
Sbjct: 90  S------GDLTYLF------SYFVSPGFTDEKTHVFL 114


>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
           Pyrophosphatase Of E86q Mutant, Complexed With
           Adp-Ribose And Mg
 pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
           Pyrophosphatase Of E86q Mutant, Complexed With
           Adp-Ribose And Zn
          Length = 170

 Score = 35.4 bits (80), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 17/97 (17%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           PAVAV+ L +       +   Q+R   G   LE+PAG+++  + D +  A RE+ E+TG+
Sbjct: 35  PAVAVIALREGR----MLFVRQMRPAVGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGL 89

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
                   DLT          +F S G  DE+  +FL
Sbjct: 90  S------GDLTYLF------SYFVSPGFTDEKTHVFL 114


>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
           Pyrophosphatase Of E82q Mutant With So4 And Mg
 pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
           Pyrophosphatase Of E82q Mutant, Complexed With So4 And
           Zn
          Length = 170

 Score = 35.4 bits (80), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 17/97 (17%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           PAVAV+ L +       +   Q+R   G   LE+PAG+++  + D +  A R++ EETG+
Sbjct: 35  PAVAVIALREGR----MLFVRQMRPAVGLAPLEIPAGLIEPGE-DPLEAARRQLAEETGL 89

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
                   DLT          +F S G  DE+  +FL
Sbjct: 90  S------GDLTYLF------SYFVSPGFTDEKTHVFL 114


>pdb|1MK1|A Chain A, Structure Of The Mt-adprase In Complex With Adpr, A Nudix
           Enzyme
 pdb|1MP2|A Chain A, Structure Of Mt-Adprase (Apoenzyme), A Nudix Hydrolase
           From Mycobacterium Tuberculosis
 pdb|1MQE|A Chain A, Structure Of The Mt-adprase In Complex With Gadolidium And
           Adp-ribose, A Nudix Enzyme
 pdb|1MQW|A Chain A, Structure Of The Mt-adprase In Complex With Three Mn2+
           Ions And Ampcpr, A Nudix Enzyme
 pdb|1MR2|A Chain A, Structure Of The Mt-Adprase In Complex With 1 Mn2+ Ion And
           Amp-Cp (A Inhibitor), A Nudix Enzyme
          Length = 207

 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 16/100 (16%)

Query: 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
           AVA+ + +D  G    +   Q R   GR + ELPAG+LD        TA RE+ EE G+Q
Sbjct: 45  AVAI-VAMDDNGNIPMVY--QYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQ 101

Query: 206 LK-LEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG 244
               + ++DL              + G  DE + ++L  G
Sbjct: 102 ASTWQVLVDLDT------------APGFSDESVRVYLATG 129


>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
           Dr2204 From Deinococcus Radiodurans
 pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
           Dr2204 From Deinococcus Radiodurans
          Length = 145

 Score = 33.5 bits (75), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEET 202
           RGP    ++ + ++GE  A+L  Q R P    I E+ AG ++  + D    A RE+ EE 
Sbjct: 3   RGPRAVFILPVTAQGE--AVLIRQFRYPLRATITEIVAGGVEKGE-DLGAAAARELLEEV 59

Query: 203 GIQLKLEDMIDLTAFLYPS---TGCKFFP 228
           G      + + L  F YP    +G  F+P
Sbjct: 60  GGAAS--EWVPLPGF-YPQPSISGVVFYP 85


>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
           Enzyme Dcp1-Dcp2 Complex
 pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
           Enzyme Dcp1-Dcp2 Complex
 pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
           Enzyme Dcp1-Dcp2 Complex
 pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
           Enzyme Dcp1-Dcp2 Complex
          Length = 266

 Score = 30.8 bits (68), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 178 LPAGMLDDDKGDFVGTAVREVEEETGI----QLKLEDMIDLT 215
            P G +D D+ D V  A+REV EETG     ++   + ID+T
Sbjct: 125 FPKGKIDKDESD-VDCAIREVYEETGFDCSSRINPNEFIDMT 165


>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
 pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
          Length = 271

 Score = 30.8 bits (68), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 178 LPAGMLDDDKGDFVGTAVREVEEETGI----QLKLEDMIDLT 215
            P G +D D+ D V  A+REV EETG     ++   + ID+T
Sbjct: 130 FPKGKIDKDESD-VDCAIREVYEETGFDCSSRINPNEFIDMT 170


>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
           Aeolicus Vf5
 pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
           Aeolicus Vf5
 pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
           Aeolicus Vf5
 pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
           Aeolicus Vf5
 pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
           (atp) (aq_158) From Aquifex Aeolicus Vf5
 pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
           (atp) (aq_158) From Aquifex Aeolicus Vf5
          Length = 134

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 193 TAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPS 229
           TAVREV EETG++ ++ D I    + Y   G + F +
Sbjct: 43  TAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKT 79


>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
           ENTEROCOCCUS Faecalis
 pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
           ENTEROCOCCUS Faecalis
          Length = 273

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 149 VLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208
           VL+  + E +   +L  Q +    R    LP G ++ ++     + +RE +EETG+ +  
Sbjct: 45  VLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNEST-EDSVLRETKEETGVVISQ 103

Query: 209 EDMIDLTAFLYP 220
           E++  L +F  P
Sbjct: 104 ENIEQLHSFSRP 115


>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
           (Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
           Resolution
          Length = 206

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 121 LKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQ--VRVPTGRVILEL 178
           L+   D+FC ETG + P               LD+     AI  E   + V     +  L
Sbjct: 53  LEVVKDLFCNETGYQTPK--------------LDTRA---AIFQEDKILLVQENDGLWSL 95

Query: 179 PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMI 212
           P G  D D+       V+EV+EE G+ ++ + ++
Sbjct: 96  PGGWCDVDQS-VKDNVVKEVKEEAGLDVEAQRVV 128


>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
 pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
          Length = 138

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207
           A  +   SE E   +L    R P   ++   P G ++ ++ +  G AVREV EE G++ K
Sbjct: 13  AACLCFRSEQEDEVLLVSSSRYPDQWIV---PGGGMEPEE-EPGGAAVREVYEEAGVKGK 68

Query: 208 L 208
           L
Sbjct: 69  L 69


>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
           Phosphohydrolase 3-Alpha
 pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
           Phosphohydrolase 3-Alpha
          Length = 136

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207
           A  +   SE E   +L    R P   ++   P G ++ ++ +  G AVREV EE G++ K
Sbjct: 5   AACLCFRSEREDEVLLVSSSRYPDRWIV---PGGGMEPEE-EPGGAAVREVYEEAGVKGK 60

Query: 208 L 208
           L
Sbjct: 61  L 61


>pdb|3OP9|A Chain A, Crystal Structure Of Transcriptional Regulator From
           Listeria Innocua
          Length = 114

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 257 KETGLRDH--GELIKV--RVVPYRELWRTTPDAKVLTAIALYEMASKEELL 303
           KE GL++H   EL+ V  R V Y     T PD + L  +A Y   S +EL+
Sbjct: 19  KEHGLKNHQIAELLNVQTRTVAYYXSGETKPDIEKLIRLATYFHLSIDELV 69


>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
           From Methanosarcina Mazei .
 pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
           From Methanosarcina Mazei
          Length = 234

 Score = 27.7 bits (60), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 200 EETGIQLKLEDMIDLTAF---LYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQ- 255
           +E+GI +  + +   TAF   L  +   ++  ++G  +EEI+    R ++DK+I M  Q 
Sbjct: 139 KESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198

Query: 256 --GKETGLRD 263
              KE G RD
Sbjct: 199 NWLKEAGFRD 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,959,199
Number of Sequences: 62578
Number of extensions: 365688
Number of successful extensions: 804
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 26
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)