Query 021805
Match_columns 307
No_of_seqs 364 out of 2174
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03143 nudix hydrolase; Prov 100.0 9.8E-62 2.1E-66 452.4 32.6 289 5-306 2-290 (291)
2 PRK15009 GDP-mannose pyrophosp 100.0 4.8E-29 1E-33 221.0 21.4 167 105-295 4-185 (191)
3 PRK10729 nudF ADP-ribose pyrop 100.0 5.7E-28 1.2E-32 215.9 22.3 165 108-295 11-190 (202)
4 KOG3041 Nucleoside diphosphate 100.0 1.6E-27 3.5E-32 207.0 16.0 190 49-286 8-199 (225)
5 PRK11762 nudE adenosine nucleo 99.9 1.1E-25 2.5E-30 198.1 22.6 162 109-297 12-180 (185)
6 TIGR00052 nudix-type nucleosid 99.9 3.9E-26 8.4E-31 201.5 19.3 165 108-295 6-184 (185)
7 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 5.7E-19 1.2E-23 146.8 14.5 120 143-286 1-120 (137)
8 cd04683 Nudix_Hydrolase_24 Mem 99.7 2.7E-17 5.9E-22 133.5 11.6 114 146-283 2-116 (120)
9 PRK09438 nudB dihydroneopterin 99.7 7E-17 1.5E-21 136.5 12.9 128 143-291 6-139 (148)
10 cd04700 DR1025_like DR1025 fro 99.7 9.4E-17 2E-21 135.4 13.0 119 145-288 14-132 (142)
11 cd03672 Dcp2p mRNA decapping e 99.7 1.2E-16 2.6E-21 135.6 13.4 112 146-284 3-114 (145)
12 cd04691 Nudix_Hydrolase_32 Mem 99.7 2.7E-16 5.8E-21 128.1 12.1 102 160-287 12-114 (117)
13 cd03673 Ap6A_hydrolase Diadeno 99.7 5.7E-16 1.2E-20 126.8 13.1 113 146-283 3-118 (131)
14 cd04684 Nudix_Hydrolase_25 Con 99.7 6.9E-16 1.5E-20 125.8 13.4 112 159-289 11-125 (128)
15 cd04679 Nudix_Hydrolase_20 Mem 99.7 7.4E-16 1.6E-20 126.2 13.4 115 146-284 4-118 (125)
16 PRK10707 putative NUDIX hydrol 99.7 5.6E-16 1.2E-20 137.4 11.5 120 139-282 25-147 (190)
17 cd03671 Ap4A_hydrolase_plant_l 99.7 1.7E-15 3.7E-20 128.2 13.8 125 144-288 3-138 (147)
18 cd03675 Nudix_Hydrolase_2 Cont 99.7 2.5E-15 5.4E-20 124.4 14.4 101 160-283 12-113 (134)
19 cd04680 Nudix_Hydrolase_21 Mem 99.7 1.2E-15 2.5E-20 123.5 11.8 109 146-283 2-110 (120)
20 PF00293 NUDIX: NUDIX domain; 99.7 9.4E-16 2E-20 125.3 11.3 120 145-287 3-125 (134)
21 cd04673 Nudix_Hydrolase_15 Mem 99.7 1.3E-15 2.8E-20 123.4 11.6 102 160-283 12-116 (122)
22 cd03426 CoAse Coenzyme A pyrop 99.6 1.8E-15 4E-20 129.7 12.2 115 145-281 3-118 (157)
23 TIGR02705 nudix_YtkD nucleosid 99.6 7.3E-15 1.6E-19 126.3 15.4 111 141-286 21-132 (156)
24 cd04666 Nudix_Hydrolase_9 Memb 99.6 5.3E-15 1.2E-19 121.9 13.5 112 147-283 3-117 (122)
25 cd04695 Nudix_Hydrolase_36 Mem 99.6 4.4E-15 9.6E-20 123.1 12.3 106 156-283 11-116 (131)
26 cd04682 Nudix_Hydrolase_23 Mem 99.6 3.7E-15 8.1E-20 121.8 11.2 101 160-282 13-115 (122)
27 cd04681 Nudix_Hydrolase_22 Mem 99.6 4.9E-15 1.1E-19 121.9 11.9 110 146-279 3-113 (130)
28 cd03428 Ap4A_hydrolase_human_l 99.6 7.7E-15 1.7E-19 120.6 12.9 117 146-286 4-120 (130)
29 cd04692 Nudix_Hydrolase_33 Mem 99.6 4.4E-15 9.6E-20 125.1 10.9 120 146-283 4-129 (144)
30 cd03427 MTH1 MutT homolog-1 (M 99.6 9.6E-15 2.1E-19 121.2 12.3 99 160-282 13-112 (137)
31 cd04687 Nudix_Hydrolase_28 Mem 99.6 2.6E-14 5.7E-19 117.6 14.0 120 146-282 3-122 (128)
32 cd04696 Nudix_Hydrolase_37 Mem 99.6 1.3E-14 2.7E-19 119.1 11.9 98 160-282 15-115 (125)
33 cd04670 Nudix_Hydrolase_12 Mem 99.6 1.4E-14 3E-19 118.9 12.2 102 159-283 14-115 (127)
34 cd04669 Nudix_Hydrolase_11 Mem 99.6 1.1E-14 2.4E-19 119.2 11.4 103 160-282 13-115 (121)
35 cd04664 Nudix_Hydrolase_7 Memb 99.6 1.3E-14 2.9E-19 119.4 11.5 119 146-284 3-121 (129)
36 cd04671 Nudix_Hydrolase_13 Mem 99.6 1.9E-14 4.1E-19 118.6 12.3 101 159-283 12-112 (123)
37 cd04693 Nudix_Hydrolase_34 Mem 99.6 6.3E-15 1.4E-19 121.1 9.1 115 147-287 3-119 (127)
38 cd03430 GDPMH GDP-mannose glyc 99.6 2.7E-14 5.8E-19 120.9 13.1 116 146-283 14-134 (144)
39 cd03429 NADH_pyrophosphatase N 99.6 1.9E-14 4E-19 119.7 11.9 96 159-281 12-107 (131)
40 cd04697 Nudix_Hydrolase_38 Mem 99.6 1E-14 2.2E-19 120.3 10.2 111 146-283 2-114 (126)
41 PRK00714 RNA pyrophosphohydrol 99.6 4.6E-14 1E-18 121.1 14.6 120 145-283 9-137 (156)
42 cd03676 Nudix_hydrolase_3 Memb 99.6 6.4E-14 1.4E-18 122.5 15.5 121 146-285 34-162 (180)
43 cd04511 Nudix_Hydrolase_4 Memb 99.6 2E-14 4.2E-19 119.0 11.6 93 160-279 25-117 (130)
44 cd04672 Nudix_Hydrolase_14 Mem 99.6 3E-14 6.5E-19 116.6 12.0 100 160-283 14-114 (123)
45 PLN02325 nudix hydrolase 99.6 3.2E-14 6.9E-19 120.5 12.3 106 160-283 21-127 (144)
46 PRK15472 nucleoside triphospha 99.6 5.5E-14 1.2E-18 117.8 13.6 110 160-283 16-127 (141)
47 cd03674 Nudix_Hydrolase_1 Memb 99.6 5.5E-14 1.2E-18 117.7 12.5 114 146-282 4-124 (138)
48 PRK15434 GDP-mannose mannosyl 99.5 6.2E-14 1.3E-18 121.0 12.6 113 146-282 19-138 (159)
49 cd04688 Nudix_Hydrolase_29 Mem 99.5 7.8E-14 1.7E-18 114.3 12.3 105 160-281 13-118 (126)
50 cd04689 Nudix_Hydrolase_30 Mem 99.5 8.9E-14 1.9E-18 113.8 12.5 99 160-279 13-112 (125)
51 PRK00241 nudC NADH pyrophospha 99.5 8E-14 1.7E-18 129.0 13.2 100 159-285 143-242 (256)
52 cd04662 Nudix_Hydrolase_5 Memb 99.5 1.4E-13 3E-18 114.3 12.7 116 146-275 2-126 (126)
53 cd04690 Nudix_Hydrolase_31 Mem 99.5 7.8E-14 1.7E-18 112.7 11.0 97 160-280 13-109 (118)
54 cd04677 Nudix_Hydrolase_18 Mem 99.5 1.3E-13 2.8E-18 113.4 11.4 115 146-284 9-125 (132)
55 cd04699 Nudix_Hydrolase_39 Mem 99.5 1.1E-13 2.5E-18 112.8 10.9 102 160-283 14-116 (129)
56 PRK15393 NUDIX hydrolase YfcD; 99.5 2E-13 4.2E-18 119.9 13.0 100 159-282 49-150 (180)
57 cd04678 Nudix_Hydrolase_19 Mem 99.5 1.5E-13 3.2E-18 113.0 11.5 114 146-281 4-117 (129)
58 cd04667 Nudix_Hydrolase_10 Mem 99.5 1.5E-13 3.2E-18 110.7 11.1 92 160-283 12-103 (112)
59 cd04676 Nudix_Hydrolase_17 Mem 99.5 2.6E-13 5.6E-18 110.2 11.6 116 146-283 4-119 (129)
60 cd04686 Nudix_Hydrolase_27 Mem 99.5 1.5E-13 3.2E-18 114.2 10.2 52 146-206 2-53 (131)
61 cd02885 IPP_Isomerase Isopente 99.5 1.6E-13 3.6E-18 118.4 10.5 119 146-285 32-152 (165)
62 cd04694 Nudix_Hydrolase_35 Mem 99.5 5.6E-13 1.2E-17 113.0 11.8 124 146-283 3-133 (143)
63 PRK10546 pyrimidine (deoxy)nuc 99.5 1.5E-12 3.2E-17 107.8 13.9 99 160-283 16-114 (135)
64 COG1051 ADP-ribose pyrophospha 99.4 7.9E-13 1.7E-17 112.4 11.5 109 146-282 12-123 (145)
65 cd03425 MutT_pyrophosphohydrol 99.4 1.8E-12 3.9E-17 104.2 12.9 100 159-283 13-112 (124)
66 TIGR00586 mutt mutator mutT pr 99.4 2.5E-12 5.4E-17 105.0 13.5 99 160-283 17-115 (128)
67 PRK03759 isopentenyl-diphospha 99.4 1.1E-12 2.3E-17 115.5 11.2 119 146-286 36-157 (184)
68 PRK10776 nucleoside triphospha 99.4 4.6E-12 1E-16 103.1 13.3 99 160-283 17-115 (129)
69 PRK05379 bifunctional nicotina 99.4 4.1E-12 8.9E-17 122.1 14.8 108 155-281 212-322 (340)
70 cd04661 MRP_L46 Mitochondrial 99.4 3E-12 6.4E-17 106.7 11.0 104 159-283 13-122 (132)
71 TIGR02150 IPP_isom_1 isopenten 99.4 2.3E-12 5E-17 110.7 10.6 117 146-286 29-147 (158)
72 cd02883 Nudix_Hydrolase Nudix 99.4 4.6E-12 9.9E-17 100.8 11.5 99 160-281 13-112 (123)
73 cd04665 Nudix_Hydrolase_8 Memb 99.4 3.9E-12 8.4E-17 104.6 11.3 101 146-278 2-102 (118)
74 cd04685 Nudix_Hydrolase_26 Mem 99.4 3E-12 6.4E-17 107.2 10.3 119 146-281 2-123 (133)
75 PLN02709 nudix hydrolase 99.3 1E-11 2.2E-16 112.3 11.9 120 143-281 32-155 (222)
76 cd04674 Nudix_Hydrolase_16 Mem 99.3 2E-11 4.3E-16 100.4 12.5 52 161-214 17-68 (118)
77 cd04663 Nudix_Hydrolase_6 Memb 99.3 3.3E-11 7.2E-16 100.2 12.4 90 175-281 25-116 (126)
78 KOG3084 NADH pyrophosphatase I 99.2 3E-12 6.6E-17 119.2 0.9 120 138-283 180-300 (345)
79 COG2816 NPY1 NTP pyrophosphohy 99.2 2E-11 4.4E-16 113.0 5.6 115 139-283 138-252 (279)
80 PRK08999 hypothetical protein; 99.2 2.1E-10 4.5E-15 108.4 12.3 98 160-282 18-115 (312)
81 KOG4432 Uncharacterized NUDIX 99.2 1.9E-10 4.2E-15 106.3 10.6 137 132-285 217-380 (405)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.1 7.4E-10 1.6E-14 97.9 12.6 123 157-291 47-181 (186)
83 COG0494 MutT NTP pyrophosphohy 99.1 2E-09 4.3E-14 87.2 11.7 44 160-207 25-69 (161)
84 PLN02791 Nudix hydrolase homol 99.0 1.5E-09 3.3E-14 113.3 9.6 121 146-283 34-160 (770)
85 KOG3069 Peroxisomal NUDIX hydr 99.0 3.2E-09 6.9E-14 95.6 10.0 118 146-281 45-163 (246)
86 PLN02552 isopentenyl-diphospha 98.8 1.8E-08 3.8E-13 92.9 10.3 123 146-283 58-205 (247)
87 KOG2839 Diadenosine and diphos 98.8 3.4E-08 7.4E-13 82.9 8.4 123 147-291 12-135 (145)
88 COG4119 Predicted NTP pyrophos 98.7 1.3E-07 2.7E-12 77.9 8.8 123 146-283 5-137 (161)
89 KOG4432 Uncharacterized NUDIX 98.6 1.4E-07 2.9E-12 87.7 7.3 123 142-283 24-171 (405)
90 KOG0648 Predicted NUDIX hydrol 98.2 8.8E-07 1.9E-11 82.8 4.1 109 155-283 124-233 (295)
91 PLN02839 nudix hydrolase 98.1 2.7E-05 5.8E-10 75.2 11.3 140 146-304 205-353 (372)
92 cd03431 DNA_Glycosylase_C DNA 97.9 0.0001 2.2E-09 58.6 10.3 44 160-204 15-58 (118)
93 COG1443 Idi Isopentenyldiphosp 97.6 0.00018 3.8E-09 62.6 6.5 121 146-286 35-158 (185)
94 KOG4195 Transient receptor pot 96.1 0.0053 1.2E-07 55.3 3.3 28 174-202 150-177 (275)
95 PF14815 NUDIX_4: NUDIX domain 95.9 0.014 3.1E-07 46.8 5.1 51 153-207 5-55 (114)
96 KOG2937 Decapping enzyme compl 94.3 0.0086 1.9E-07 57.0 -0.9 100 155-279 91-190 (348)
97 PF13869 NUDIX_2: Nucleotide h 94.0 0.97 2.1E-05 40.2 11.3 84 155-244 54-145 (188)
98 COG4112 Predicted phosphoester 94.0 0.24 5.2E-06 42.9 7.2 91 180-291 97-197 (203)
99 KOG0142 Isopentenyl pyrophosph 92.1 0.16 3.4E-06 45.4 3.5 75 189-283 104-185 (225)
100 KOG1689 mRNA cleavage factor I 84.1 3.8 8.2E-05 35.9 6.5 49 148-203 74-122 (221)
101 KOG4313 Thiamine pyrophosphoki 83.3 1.6 3.5E-05 40.4 4.1 127 161-302 148-281 (306)
102 PRK10880 adenine DNA glycosyla 60.9 43 0.00093 32.7 8.2 39 160-206 243-281 (350)
103 PF13355 DUF4101: Protein of u 59.2 45 0.00098 27.1 6.9 50 64-116 16-67 (117)
104 PF03487 IL13: Interleukin-13; 46.7 18 0.0004 24.0 2.1 24 178-202 13-36 (43)
105 PF14443 DBC1: DBC1 36.2 79 0.0017 26.4 4.8 35 173-207 25-59 (126)
106 PF08968 DUF1885: Domain of un 30.0 49 0.0011 27.5 2.6 40 58-99 84-123 (130)
107 PF06615 DUF1147: Protein of u 23.2 79 0.0017 21.9 2.2 23 162-184 17-39 (59)
108 KOG4548 Mitochondrial ribosoma 22.5 1.7E+02 0.0036 27.4 4.9 43 161-206 141-184 (263)
109 PF12123 Amidase02_C: N-acetyl 22.1 1.7E+02 0.0037 19.9 3.7 35 46-88 4-38 (45)
110 cd01818 TIAM1_RBD Ubiquitin do 21.2 1.9E+02 0.004 22.1 4.1 53 48-113 2-54 (77)
No 1
>PLN03143 nudix hydrolase; Provisional
Probab=100.00 E-value=9.8e-62 Score=452.37 Aligned_cols=289 Identities=79% Similarity=1.185 Sum_probs=253.2
Q ss_pred ccccccceeecCCCCccccccccccceeeeeecCCCCCCCCceeeEEeCCCCCCCeEEEeCCCCCHHHHHhhhcChhHHH
Q 021805 5 FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQ 84 (307)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 84 (307)
||.||+|..+.|++ ...++++|+++++ ++++|||||++++++|+|+++||+|++|+.++++|++|++
T Consensus 2 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (291)
T PLN03143 2 FTLLPSRPLALPSR-----------MAHKEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQ 68 (291)
T ss_pred CccCCCcccccCCC-----------cceehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHH
Confidence 45566665554443 1334445555555 7999999999989999999999999999999999999999
Q ss_pred HHHHhhhhcccccCCCeeeEEEEEeeEeeecccccEEEEEEEEEEcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEE
Q 021805 85 WLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILT 164 (307)
Q Consensus 85 w~~~~~~~~~~~~~~~~~L~~v~i~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLv 164 (307)
|+++++++++++++++|.||+|+||++|+||+|.||+++++|.++.+||+.++++|+.|+++|+|++++.+++++++||+
T Consensus 69 w~~~~~~~~~~~~~~~~~~~~~~~~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLV 148 (291)
T PLN03143 69 WLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLT 148 (291)
T ss_pred HHHHhhhccccccCCCceeEEEEEEEEecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766666789999
Q ss_pred EeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEE
Q 021805 165 EQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG 244 (307)
Q Consensus 165 rQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~ 244 (307)
+|+|+|.+.+.||||||++|+++|++.+||+||++|||||.+...++..++.+.++.+...+|++||++++.+++|++..
T Consensus 149 rQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~ 228 (291)
T PLN03143 149 EQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRG 228 (291)
T ss_pred EeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEcc
Confidence 99999999999999999999744899999999999999999876778888655444444579999999999999999988
Q ss_pred echhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHHHHHHHHHhcCCCCCC
Q 021805 245 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSR 306 (307)
Q Consensus 245 ~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al~L~~~~~~~g~lp~~ 306 (307)
..+...+..+++..++..+++|.|+++|++++|+|++++|+|+++|+++|+.++++|++|++
T Consensus 229 ~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~al~l~~~~k~~g~~~~~ 290 (291)
T PLN03143 229 HVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLPSS 290 (291)
T ss_pred ccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCC
Confidence 77666555555655667789999999999999999999999999999999999999999986
No 2
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.97 E-value=4.8e-29 Score=221.00 Aligned_cols=167 Identities=21% Similarity=0.328 Sum_probs=134.4
Q ss_pred EEEEeeEeeecccccEEEEEEEEE--EcCCCcE--EeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCC------CCe
Q 021805 105 QVLIQGVDMFGKRIGFLKFKADIF--CKETGQK--VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT------GRV 174 (307)
Q Consensus 105 ~v~i~~~~~fg~r~~~i~~~~d~~--~~~~G~~--~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~------g~~ 174 (307)
+|+|.+...+. .+|+++..+.+ ..+||.. ..+.++.++++|+|+++. ++.+++||++|||+|. +++
T Consensus 4 ~~~~~~~~~~~--~~~~~v~~~~~~~~~pdG~~~~~~r~vv~~~~~v~Vl~~~--~~~~~vvLvrQyR~~v~~~~~~~~~ 79 (191)
T PRK15009 4 QITLIKDKILS--DNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYN--AKKKTVVLIRQFRVATWVNGNESGQ 79 (191)
T ss_pred ceEEEEEEEEe--CCeEEEEEEEEEEECCCCCccceEEEEEEECCEEEEEEEE--CCCCEEEEEEcccccccccCCCCce
Confidence 46667777775 68999998774 5699984 567899999999999873 3334799999999998 889
Q ss_pred EEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHh
Q 021805 175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL 254 (307)
Q Consensus 175 ~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~ 254 (307)
.||+|||.+|+ +++++||+||++||||+.+ .++..++. +|++||.+++.+|+|+++......
T Consensus 80 ~lElPAG~vd~--~~p~~aA~REL~EETGy~a--~~~~~l~~---------~~~spG~s~e~~~lf~a~~~~~~~----- 141 (191)
T PRK15009 80 LIETCAGLLDN--DEPEVCIRKEAIEETGYEV--GEVRKLFE---------LYMSPGGVTELIHFFIAEYSDSQR----- 141 (191)
T ss_pred EEEEeccccCC--CCHHHHHHHHHHHhhCCcc--ceEEEeeE---------EEcCCcccCcEEEEEEEEECchhc-----
Confidence 99999999996 4699999999999999998 47888875 899999999999999998632111
Q ss_pred ccCCCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHH
Q 021805 255 QGKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE 295 (307)
Q Consensus 255 ~g~~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~ 295 (307)
.+ .+..+++|.|++.|+|++|+.+++. |+++++|+++++
T Consensus 142 ~~--~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~~~~ 185 (191)
T PRK15009 142 AN--AGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQ 185 (191)
T ss_pred cc--CCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 01 1123688999999999999999874 889998874433
No 3
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.96 E-value=5.7e-28 Score=215.88 Aligned_cols=165 Identities=25% Similarity=0.366 Sum_probs=130.1
Q ss_pred EeeEeeecccccEEEEEEEEEE--cCCCc---EEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCC-----CeEEE
Q 021805 108 IQGVDMFGKRIGFLKFKADIFC--KETGQ---KVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG-----RVILE 177 (307)
Q Consensus 108 i~~~~~fg~r~~~i~~~~d~~~--~~~G~---~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g-----~~~wE 177 (307)
+++..+|. +|+++..+.+. .++|. ...+.++.++++|+|+++.. ..++|||++|||+|.+ ++.||
T Consensus 11 ~~~~~v~~---~~~~v~~~~~~~~~~~G~~~~~~~~~vv~~~~~V~il~~~~--~~~~vlLvrQyR~~~~~~~~~~~~lE 85 (202)
T PRK10729 11 IARETLYR---GFFSLDLYRFRHRLFNGEMSGEVRREIFERGHAAVLLPFDP--VRDEVVLIEQIRIAAYDTSETPWLLE 85 (202)
T ss_pred EEEEEEEc---CeEEEEEEEEEEEecCCccccEEeEEEEEcCCeEEEEEEEC--CCCEEEEEEeeecccccCCCCCeEEE
Confidence 45556665 47767654443 46887 56788999999999998842 2237999999999985 48999
Q ss_pred ccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccC
Q 021805 178 LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGK 257 (307)
Q Consensus 178 lPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~ 257 (307)
+|||++|+| |++.+||+|||.||||+.+ .++..++. +|++||.+++.+++|+++...... ..
T Consensus 86 ~PAG~vd~g-E~p~~aA~REL~EETGy~a--~~~~~l~~---------~~~spg~~~e~~~~fla~~~~~~~------~~ 147 (202)
T PRK10729 86 MVAGMIEEG-ESVEDVARREAIEEAGLIV--GRTKPVLS---------YLASPGGTSERSSIMVGEVDATTA------SG 147 (202)
T ss_pred ccceEcCCC-CCHHHHHHHHHHHHhCcee--eEEEEEEE---------EEcCCCcCceEEEEEEEEEcchhc------cc
Confidence 999999998 9999999999999999998 46777764 899999999999999998533211 11
Q ss_pred CCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHH
Q 021805 258 ETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE 295 (307)
Q Consensus 258 ~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~ 295 (307)
..+..+++|.|++.|+|++++.+++. |+++++|++++.
T Consensus 148 ~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti~al~~~~ 190 (202)
T PRK10729 148 IHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQ 190 (202)
T ss_pred CCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 12345889999999999999998875 889999875544
No 4
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.95 E-value=1.6e-27 Score=206.96 Aligned_cols=190 Identities=37% Similarity=0.537 Sum_probs=140.4
Q ss_pred eEEeCCCCCCCeEEEeCCCCCHHHHHhhhcChhHHHHHHHhhhhcccccCCCeeeEEEEEeeEeeecccccEEEEEEEEE
Q 021805 49 SITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIF 128 (307)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~~~~~~~~~~L~~v~i~~~~~fg~r~~~i~~~~d~~ 128 (307)
++++|++.+.|+-++..... .++. +-.. +. +.-.|..|++|.++ |.+|+...|
T Consensus 8 ~i~l~sq~ne~~~ss~~~kp--~~i~---~~~~-------ie-----~~~kWi~Lkkv~~q--D~~GKir~w-------- 60 (225)
T KOG3041|consen 8 SITLPSQPNEPTMSSATGKP--SKII---EVED-------IE-----SDGKWIRLKKVLYQ--DPTGKIRDW-------- 60 (225)
T ss_pred eeeccCCCCCceeecccCCc--hhee---eeec-------cc-----CCccEEEEEEEEEE--cCCCceeee--------
Confidence 99999987767666655433 1221 1111 10 34569999999998 888863333
Q ss_pred EcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 021805 129 CKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (307)
Q Consensus 129 ~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~ 208 (307)
..++..++ ++.++++|+||+++..+|+.++||++|+|+|.|+.++|+|||++|.| |++.+||+|||+|||||..+
T Consensus 61 --es~~Rttr-~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~g-e~~~~aAiREl~EEtGy~gk- 135 (225)
T KOG3041|consen 61 --ESVQRTTR-VEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDG-EDFEGAAIRELEEETGYKGK- 135 (225)
T ss_pred --ehheeccc-ccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCC-CchHHHHHHHHHHHhCccce-
Confidence 23444555 78899999999999989999999999999999999999999999998 99999999999999999954
Q ss_pred cceeeccccccCCCCceeecCCCccceEEEEEE--EEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805 209 EDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL--YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 286 (307)
Q Consensus 209 ~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~--~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k 286 (307)
+.... ..+|.+||.++...++.+ +.+..+ ++. .+.++ .+++|.|+++.+++.++|+.+.+.+
T Consensus 136 --v~~~s--------~~~f~DPGltn~~~~iv~v~idg~~p-Enq----rp~q~-ledgEfIev~~i~~~~L~~~~~~l~ 199 (225)
T KOG3041|consen 136 --VDMVS--------PTVFLDPGLTNCNLCIVVVDIDGDVP-ENQ----RPVQQ-LEDGEFIEVFLIPLSELWRELADLD 199 (225)
T ss_pred --eeecc--------ccEEcCCCCCCCceEEEEEEecCCCc-ccc----Ccccc-CCCCceEEEEEeeHHHHHHHHHhhh
Confidence 22222 248888988655555544 444333 323 33343 4789999999999999999887444
No 5
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.95 E-value=1.1e-25 Score=198.09 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=128.8
Q ss_pred eeEeeecccccEEEEEEEEEEcCCCcEEeEEEEE--eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCC
Q 021805 109 QGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFA--RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDD 186 (307)
Q Consensus 109 ~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~--r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g 186 (307)
.+..+|. ++|+++..+.+..++|+.....++. ++++|+|+++. ++ ++|||++|+|.+.+.+.||||||.+|+|
T Consensus 12 ~~~~v~~--~~~~~v~~~~~~~~~G~~~~~~~v~~~~~~~v~v~~~~-~~--~~vlLvrq~r~~~~~~~~elPaG~ve~g 86 (185)
T PRK11762 12 NRETVAK--SRLFRVESVDLEFSNGVERVYERMRPSGRGAVMIVPIL-DD--DTLLLIREYAAGTERYELGFPKGLIDPG 86 (185)
T ss_pred eEEEEEe--CCEEEEEEEEEEcCCCCEEEEEEEecCCCCEEEEEEEe-CC--CEEEEEEeecCCCCCcEEEccceeCCCC
Confidence 3344444 5899999988888999876655554 44678888764 33 3699999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCc
Q 021805 187 KGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGE 266 (307)
Q Consensus 187 ~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E 266 (307)
|++.+||+||++||||+++ ..+..++. ++++||.+++.+++|++...... ....++.|
T Consensus 87 -E~~~~aA~REl~EEtG~~~--~~l~~l~~---------~~~~~~~~~~~~~~f~a~~~~~~----------~~~~~e~E 144 (185)
T PRK11762 87 -ETPLEAANRELKEEVGFGA--RQLTFLKE---------LSLAPSYFSSKMNIVLAEDLYPE----------RLEGDEPE 144 (185)
T ss_pred -CCHHHHHHHHHHHHHCCCC--cceEEEEE---------EecCCCccCcEEEEEEEEccccc----------cCCCCCCc
Confidence 9999999999999999998 46777764 78899999999999998753221 11236788
Q ss_pred eEEEEEEchhhHhhccC-----ChhHHHHHHHHHHH
Q 021805 267 LIKVRVVPYRELWRTTP-----DAKVLTAIALYEMA 297 (307)
Q Consensus 267 ~i~v~wvpleel~~~i~-----D~ktl~al~L~~~~ 297 (307)
.+++.|+|++++.+++. |+++++|+.++..+
T Consensus 145 ~i~~~~~~~~e~~~~~~~g~i~d~~ti~al~~~~~~ 180 (185)
T PRK11762 145 PLEVVRWPLADLDELLARPDFSEARSVAALFLAREW 180 (185)
T ss_pred eeEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999988864 88899888655533
No 6
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.95 E-value=3.9e-26 Score=201.48 Aligned_cols=165 Identities=26% Similarity=0.346 Sum_probs=127.8
Q ss_pred EeeEeeecccccEEEEEEEE--EEcCCC--cEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCC-----CCeEEEc
Q 021805 108 IQGVDMFGKRIGFLKFKADI--FCKETG--QKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT-----GRVILEL 178 (307)
Q Consensus 108 i~~~~~fg~r~~~i~~~~d~--~~~~~G--~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~-----g~~~wEl 178 (307)
+.+...|. +.|+.++.+. ...++| ....+.++.++++|+|+++. ++.++|||++|+|+|. +.+.||+
T Consensus 6 l~~~~v~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~v~vl~~~--~~~~~vlLvrq~R~~~~~~~~~~~~lel 81 (185)
T TIGR00052 6 IIKDTLYS--GFFSLLHNIFYHRLFKGGESIRVTREIYDRGNAAAVLLYD--PKKDTVVLIEQFRIAAYVNGEEPWLLEL 81 (185)
T ss_pred EEEEEEec--CCcEEEEEEEEEEeeCCCCCceEEEEEEEcCCeEEEEEEE--CCCCEEEEEECceeeeeecCCcceEEEE
Confidence 34455554 5677776533 334455 56788999999999999874 3334799999999988 6789999
Q ss_pred cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCC
Q 021805 179 PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKE 258 (307)
Q Consensus 179 PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~ 258 (307)
|||++|+| |++++||+||++||||+.+. .+..++. +|++||.+++.+++|+++...... .+.
T Consensus 82 PaG~ve~g-E~~~~aA~REl~EEtG~~~~--~~~~~~~---------~~~~~g~~~~~~~~f~a~~~~~~~-----~~~- 143 (185)
T TIGR00052 82 SAGMVEKG-ESPEDVARREAIEEAGYQVK--NLRKLLS---------FYSSPGGVTELIHLFIAEVDDNQA-----AGI- 143 (185)
T ss_pred CcEecCCC-CCHHHHHHHHccccccceec--ceEEEEE---------EEcCCCCCcEEEEEEEEEEchhhc-----CCC-
Confidence 99999998 99999999999999999984 6777764 899999999999999987532211 111
Q ss_pred CccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHH
Q 021805 259 TGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE 295 (307)
Q Consensus 259 ~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~ 295 (307)
.+ .+++|.+++.|++++++.+++. |+++++|+++|+
T Consensus 144 ~~-~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t~~al~~~~ 184 (185)
T TIGR00052 144 GG-GADEEEIEVLHLVFSQALQWIKEGKIDNGKTVILLQWLQ 184 (185)
T ss_pred CC-CCCccceEEEEeCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 12 2567789999999999998874 889999886664
No 7
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.81 E-value=5.7e-19 Score=146.82 Aligned_cols=120 Identities=42% Similarity=0.548 Sum_probs=90.5
Q ss_pred eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST 222 (307)
Q Consensus 143 r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~ 222 (307)
|.++|+++++. +. +++||++|+|.+.++..|++|||++|.| |++.+||+||++||||+++. .+..++.
T Consensus 1 ~~~~v~v~~~~--~~-~~iLl~~~~~~~~~~~~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~--~~~~~~~------ 68 (137)
T cd03424 1 HPDAVAVLPYD--DD-GKVVLVRQYRPPVGGWLLELPAGLIDPG-EDPEEAARRELEEETGYEAG--DLEKLGS------ 68 (137)
T ss_pred CCCEEEEEEEc--CC-CeEEEEEeeecCCCCEEEEeCCccCCCC-CCHHHHHHHHHHHHHCCCcc--ceEEEee------
Confidence 45677777762 22 4799999999887777999999999998 99999999999999999984 5666654
Q ss_pred CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805 223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 286 (307)
Q Consensus 223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k 286 (307)
++..++.....+++|++........ ...++.|..+++|++++|+.+++.+++
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 69 ---FYPSPGFSDERIHLFLAEDLSPGEE---------GLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred ---EecCCcccCccEEEEEEEccccccc---------CCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 4444666666777887755321100 123567899999999999999887544
No 8
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.7e-17 Score=133.54 Aligned_cols=114 Identities=26% Similarity=0.295 Sum_probs=77.3
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|.++++ +++ +|||++|.+.+..+..|++|||++|+| |++.+||+||++||||+.+....+..++.
T Consensus 2 ~v~~vi~--~~~--~vLL~~r~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~v~~~~~~~~~~--------- 67 (120)
T cd04683 2 AVYVLLR--RDD--EVLLQRRANTGYMDGQWALPAGHLEKG-EDAVTAAVREAREEIGVTLDPEDLRLAHT--------- 67 (120)
T ss_pred cEEEEEE--ECC--EEEEEEccCCCCCCCeEeCCccccCCC-CCHHHHHHHHHHHHHCCccChhheEEEEE---------
Confidence 3444433 444 599998877655567899999999998 99999999999999999986545555543
Q ss_pred eecCCCccceEEEE-EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 226 FFPSAGGCDEEISL-FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 226 ~~~spg~~~e~i~l-f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
++..++.....+.+ |.+... .. ... ..+++|..+++|++++++...+.
T Consensus 68 ~~~~~~~~~~~~~~~f~~~~~-~~--------~~~-~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 68 MHRRTEDIESRIGLFFTVRRW-SG--------EPR-NCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEecCCCCceEEEEEEEEEee-cC--------ccc-cCCCCcEeeEEEEchHHCcchhc
Confidence 23333332344444 444332 11 111 22557888999999999987664
No 9
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.72 E-value=7e-17 Score=136.47 Aligned_cols=128 Identities=21% Similarity=0.164 Sum_probs=83.2
Q ss_pred eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST 222 (307)
Q Consensus 143 r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~ 222 (307)
++.+|+++++. .++ ++||++|.+. ...|++|||++|.| |++.+||+||++||||+++....+..+.... ..
T Consensus 6 ~~~~v~~vi~~-~~~--~vLl~~r~~~---~~~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~--~~ 76 (148)
T PRK09438 6 RPVSVLVVIYT-PDL--GVLMLQRADD---PDFWQSVTGSLEEG-ETPAQTAIREVKEETGIDVLAEQLTLIDCQR--SI 76 (148)
T ss_pred CceEEEEEEEe-CCC--eEEEEEecCC---CCcEeCCcccCCCC-CCHHHHHHHHHHHHhCcCccccceeeccccc--cc
Confidence 45677777652 333 5888877543 24799999999998 9999999999999999998433333221000 00
Q ss_pred Cceee------cCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805 223 GCKFF------PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI 291 (307)
Q Consensus 223 ~~~~~------~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al 291 (307)
...++ ..++..+...++|+++.... . ..+.+|..++.|++++++.++........++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---------~---~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l 139 (148)
T PRK09438 77 EYEIFPHWRHRYAPGVTRNTEHWFCLALPHE---------R---PVVLTEHLAYQWLDAREAAALTKSWSNAEAI 139 (148)
T ss_pred ccccchhhhhccccccCCceeEEEEEecCCC---------C---ccccCcccceeeCCHHHHHHHhcChhHHHHH
Confidence 00011 14566677888888764211 0 1234589999999999999987644433333
No 10
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.72 E-value=9.4e-17 Score=135.42 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=80.1
Q ss_pred CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 224 (307)
Q Consensus 145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~ 224 (307)
.+|+++++. .++ ++||+++ +.+.++..|++|||++|+| |++.+||+||++||||+++.. +..++..
T Consensus 14 ~av~~vv~~-~~~--~vLL~~r-~~~~~~~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~~~--~~~~~~~------- 79 (142)
T cd04700 14 RAAGAVILN-ERN--DVLLVQE-KGGPKKGLWHIPSGAVEDG-EFPQDAAVREACEETGLRVRP--VKFLGTY------- 79 (142)
T ss_pred eeEEEEEEe-CCC--cEEEEEE-cCCCCCCeEECCceecCCC-CCHHHHHHHHHHHhhCceeec--cEEEEEE-------
Confidence 456666552 233 5888876 4444567899999999998 999999999999999999853 3444321
Q ss_pred eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHH
Q 021805 225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVL 288 (307)
Q Consensus 225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl 288 (307)
.+..++......++|++...... ......+|..+++|++++++.+++.++++.
T Consensus 80 -~~~~~~~~~~~~~~f~~~~~~~~----------~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 80 -LGRFDDGVLVLRHVWLAEPEGQT----------LAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred -EEEcCCCcEEEEEEEEEEecCCc----------cccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 22233333344567777643110 001234688999999999999998865543
No 11
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.71 E-value=1.2e-16 Score=135.62 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=76.1
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
.++++++. ++ .++|||++|++.+ .|+||||++|.| |++.+||+||++||||+++.. +... .
T Consensus 3 ~~gaii~~-~~-~~~vLLvr~~~~~----~W~lPGG~ve~g-Es~~~AA~REl~EETGl~v~~--~~~~----------~ 63 (145)
T cd03672 3 VYGAIILN-ED-LDKVLLVKGWKSK----SWSFPKGKINKD-EDDHDCAIREVYEETGFDISK--YIDK----------D 63 (145)
T ss_pred eeEEEEEe-CC-CCEEEEEEecCCC----CEECCCccCCCC-cCHHHHHHHHHHHhhCcccee--cccc----------c
Confidence 44555442 22 2379999887653 699999999998 999999999999999999852 2211 1
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD 284 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D 284 (307)
.|...+..+..+++|++....... .....+++|..+++|++++++.+++.+
T Consensus 64 ~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 64 DYIELIIRGQNVKLYIVPGVPEDT--------PFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred eeeecccCCcEEEEEEEecCCCCc--------ccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 344444455667777765321100 000123578999999999999988764
No 12
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=2.7e-16 Score=128.14 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=75.0
Q ss_pred EEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 160 YAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
+|||++|.+.+. ....|++|||++|+| |++.+||+||++||||+++. .+..+.. ++...+ ....++
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~l~~---------~~~~~~-~~~~~~ 78 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAG-ESQEEALLREVQEELGVDPL--SYTYLCS---------LYHPTS-ELQLLH 78 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCC-CCHHHHHHHHHHHHHCCCcc--cceEEEE---------EeccCC-CeEEEE
Confidence 699999876553 556899999999998 99999999999999999963 4555543 333232 455667
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV 287 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt 287 (307)
+|.+.... + ....+|..+++|++++++..+..+.++
T Consensus 79 ~~~~~~~~---------~----~~~~~E~~~~~W~~~~~l~~~~~~~~~ 114 (117)
T cd04691 79 YYVVTFWQ---------G----EIPAQEAAEVHWMTANDIVLASEADRL 114 (117)
T ss_pred EEEEEEec---------C----CCCcccccccEEcCHHHcchhhhhHHh
Confidence 77765421 1 124478889999999999987766553
No 13
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.68 E-value=5.7e-16 Score=126.81 Aligned_cols=113 Identities=27% Similarity=0.258 Sum_probs=78.0
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+++++++..++++.+|||+++.+. ..|++|||++|+| |++.+||.||++||||+++.. +..++.+
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~~----~~w~~PgG~v~~g-Es~~~aa~REl~EEtGl~~~~--~~~~~~~-------- 67 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPRG----DDWSLPKGKLEPG-ETPPEAAVREVEEETGIRAEV--GDPLGTI-------- 67 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCCC----CcccCCCCccCCC-CCHHHHHHHHHhhhhCCceEe--cceEEEE--------
Confidence 455555543444468999987654 4699999999998 999999999999999998853 3334321
Q ss_pred eecC---CCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 226 FFPS---AGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 226 ~~~s---pg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
.|+. ++.....+++|.+..... . .. ..+++|..+++|++++++.+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~-~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 68 RYWFSSSGKRVHKTVHWWLMRALGG-E--------FT-PQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred EEeccCCCCCcceEEEEEEEEEcCC-C--------cc-cCCCCcEEEEEEcCHHHHHHHcC
Confidence 2222 234556777777654321 1 00 11567889999999999998876
No 14
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.68 E-value=6.9e-16 Score=125.84 Aligned_cols=112 Identities=19% Similarity=0.139 Sum_probs=77.0
Q ss_pred eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc---cce
Q 021805 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG---CDE 235 (307)
Q Consensus 159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~---~~e 235 (307)
++|||+++.+.+ ++..|++|||++|.| |++.+||+||++||||+++.. +..++.. ...+.+++. .+.
T Consensus 11 ~~vLl~~~~~~~-~~~~w~lPgG~ve~g-E~~~~aa~RE~~EEtGl~~~~--~~~~~~~------~~~~~~~~~~~~~~~ 80 (128)
T cd04684 11 GKLLLIQKNGGP-YEGRWDLPGGGIEPG-ESPEEALHREVLEETGLTVEI--GRRLGSA------SRYFYSPDGDYDAHH 80 (128)
T ss_pred CEEEEEEccCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCcEeec--ceeeeEE------EEEEECCCCCeeccE
Confidence 369999888766 556899999999998 999999999999999999854 3333321 123444443 244
Q ss_pred EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHH
Q 021805 236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLT 289 (307)
Q Consensus 236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~ 289 (307)
..++|.+....... ......+|..++.|++++++.+.........
T Consensus 81 ~~~~f~~~~~~~~~---------~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~ 125 (128)
T cd04684 81 LCVFYDARVVGGAL---------PVQEPGEDSHGAAWLPLDEAIERLLSPLVLW 125 (128)
T ss_pred EEEEEEEEEecCcc---------ccCCCCCCceeeEEECHHHhhccCCCHHHHH
Confidence 55667765532110 0123566788999999999987766444433
No 15
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=7.4e-16 Score=126.24 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=75.3
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ +.++ +|||++|.+.+ +...|++|||++|+| |++.+||+||++||||+++...++..... .
T Consensus 4 ~~~~~i~-~~~~--~vLL~~r~~~~-~~~~w~lPgG~ve~g-Et~~eaa~RE~~EEtGl~~~~~~~~~~~~--------~ 70 (125)
T cd04679 4 GCGAAIL-RDDG--KLLLVKRLRAP-EAGHWGIPGGKVDWM-EAVEDAVVREIEEETGLSIHSTRLLCVVD--------H 70 (125)
T ss_pred EEEEEEE-CCCC--EEEEEEecCCC-CCCeEeCCeeeccCC-CCHHHHHHHHHHHHHCCCcccceEEEEEe--------e
Confidence 4555544 2233 69999887654 345899999999998 99999999999999999986433322211 1
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD 284 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D 284 (307)
.+..+ .......+|++..... . ....+++|..+++|++++++.+.+.+
T Consensus 71 ~~~~~-~~~~~~~~f~~~~~~~---------~-~~~~~~~E~~~~~W~~~~~l~~~l~~ 118 (125)
T cd04679 71 IIEEP-PQHWVAPVYLAENFSG---------E-PRLMEPDKLLELGWFALDALPQPLTR 118 (125)
T ss_pred cccCC-CCeEEEEEEEEeecCC---------c-cccCCCccccEEEEeCHHHCCchhHH
Confidence 22222 2233445566654211 1 11235678889999999999876653
No 16
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.66 E-value=5.6e-16 Score=137.37 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=80.2
Q ss_pred EEEEeCCEEEEEEEEecCCceEEEEEE---eeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeecc
Q 021805 139 IVFARGPAVAVLILLDSEGETYAILTE---QVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLT 215 (307)
Q Consensus 139 ~v~~r~~aVaVl~il~~~g~~~VLLvr---Q~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~ 215 (307)
+...++++|+|+++..+ ++..+||++ |+|... +.|+||||++|+++|++.+||+||++||||+.. +.+..++
T Consensus 25 ~~~~~~~aavvl~l~~~-~~~~vLl~~R~~~~r~~~--G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg 99 (190)
T PRK10707 25 ETLNQRQAAVLIPIVRR-PQPTLLLTQRSIHLRKHA--GQVAFPGGAVDPTDASLIATALREAQEEVAIPP--SAVEVIG 99 (190)
T ss_pred ccccCCCeEEEEEEEEC-CCCEEEEEEeCCcccCCC--CcEEcCCcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEE
Confidence 34456778888877643 334677776 344433 368999999998657899999999999999987 4677777
Q ss_pred ccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 216 AFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 216 ~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
. +++.++..+..++.|++...... .-..+++|.+++.|+|++++.++.
T Consensus 100 ~---------l~~~~~~~~~~~~~~v~~~~~~~----------~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 100 V---------LPPVDSSTGYQVTPVVGIIPPDL----------PYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred E---------eeeeeccCCcEEEEEEEEECCCC----------CCCCChhhhheEEEEeHHHHhCcc
Confidence 5 33322223333444443322111 112477899999999999998774
No 17
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.66 E-value=1.7e-15 Score=128.18 Aligned_cols=125 Identities=25% Similarity=0.281 Sum_probs=81.5
Q ss_pred CCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805 144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (307)
Q Consensus 144 ~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~ 223 (307)
+.+|+++++. .+ ++|||++|.+.+ ..|++|||++|+| |++.+||+||++||||+++.... .++.+-.
T Consensus 3 ~~~v~~ii~~-~~--~~vLL~~r~~~~---~~W~~PgG~~e~g-E~~~~aA~REv~EEtGl~~~~~~--~l~~~~~---- 69 (147)
T cd03671 3 RPNVGVVLFN-ED--GKVFVGRRIDTP---GAWQFPQGGIDEG-EDPEQAALRELEEETGLDPDSVE--IIAEIPD---- 69 (147)
T ss_pred CceEEEEEEe-CC--CEEEEEEEcCCC---CCEECCcCCCCCC-cCHHHHHHHHHHHHHCCCcCceE--EEEEcCC----
Confidence 3567777652 33 369999988765 5799999999998 99999999999999999985333 3322100
Q ss_pred ceeecCC---------C-ccceEEEEEEEEEechhHHHHHhccCCCccC-CCCceEEEEEEchhhHhhccCChhHH
Q 021805 224 CKFFPSA---------G-GCDEEISLFLYRGRVDKEIIMQLQGKETGLR-DHGELIKVRVVPYRELWRTTPDAKVL 288 (307)
Q Consensus 224 ~~~~~sp---------g-~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~-~~~E~i~v~wvpleel~~~i~D~ktl 288 (307)
...|..+ | ..+...++|++........+ .-.. +++|..+++|++++++.+++...+..
T Consensus 70 ~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~ 138 (147)
T cd03671 70 WLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEI-------DLNAPEHPEFDEWRWVPLEELPDLIVPFKRP 138 (147)
T ss_pred eeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccc-------cCCCCCCCCEeeEEeCCHHHHHHhchhhhHH
Confidence 0112222 1 23556677776553211111 0011 35789999999999999998744433
No 18
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.66 E-value=2.5e-15 Score=124.43 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=69.7
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCC-ccceEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG-GCDEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg-~~~e~i~ 238 (307)
++||++|.+. ++..|++|||++|+| |++.+||.||++||||+++....+.... .+..+. ......+
T Consensus 12 ~vLlv~r~~~--~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~----------~~~~~~~~~~~~~~ 78 (134)
T cd03675 12 RFLLVEEETD--GGLVFNQPAGHLEPG-ESLIEAAVRETLEETGWHVEPTALLGIY----------QWTAPDSDTTYLRF 78 (134)
T ss_pred EEEEEEEccC--CCceEECCCccCCCC-CCHHHHHHHHHHHHHCcccccceEEEEE----------EeecCCCCeeEEEE
Confidence 5999988775 456899999999998 9999999999999999998654443332 222232 1222334
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+|++...... .....++|..++.|++++++.++..
T Consensus 79 ~f~~~~~~~~----------~~~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 79 AFAAELLEHL----------PDQPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred EEEEEECCCC----------CCCCCCCCceeeEEEeHHHHHhhhh
Confidence 5655442110 0012456788999999999998873
No 19
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.2e-15 Score=123.46 Aligned_cols=109 Identities=25% Similarity=0.323 Sum_probs=74.2
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|.++++ ++ ++++||++|...+ .|++|||+++.| |++.+||+||++||||+.+. ..+..++.
T Consensus 2 ~~~~~i~--~~-~~~vLL~~r~~~~----~w~~PgG~ve~g-Et~~~aa~REl~EEtG~~~~-~~~~~~~~--------- 63 (120)
T cd04680 2 GARAVVT--DA-DGRVLLVRHTYGP----GWYLPGGGLERG-ETFAEAARRELLEELGIRLA-VVAELLGV--------- 63 (120)
T ss_pred ceEEEEE--CC-CCeEEEEEECCCC----cEeCCCCcCCCC-CCHHHHHHHHHHHHHCCccc-cccceEEE---------
Confidence 3445544 32 2368888765432 799999999998 99999999999999999985 12333332
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
++.........+++|.+..... .. ..+++|..+++|++++++.+++.
T Consensus 64 ~~~~~~~~~~~~~~f~~~~~~~---------~~--~~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 64 YYHSASGSWDHVIVFRARADTQ---------PV--IRPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred EecCCCCCceEEEEEEecccCC---------Cc--cCCcccEEEEEEECHHHCcccCC
Confidence 2222333455677777654321 10 23667889999999999998765
No 20
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.65 E-value=9.4e-16 Score=125.27 Aligned_cols=120 Identities=27% Similarity=0.390 Sum_probs=83.4
Q ss_pred CEEEEEEEEecCCceEEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805 145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (307)
Q Consensus 145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~ 223 (307)
.+|+++++. .++ ++||+++.+.+. ....|.+|||++|+| |++.+||+||++||||+++....+....
T Consensus 3 ~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~-E~~~~aa~REl~EE~g~~~~~~~~~~~~-------- 70 (134)
T PF00293_consen 3 RAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPG-ESPEEAARRELKEETGLDVSPLELLGLF-------- 70 (134)
T ss_dssp EEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTT-SHHHHHHHHHHHHHHSEEEEEEEEEEEE--------
T ss_pred CEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcC-CchhhhHHhhhhhcccceecccccceee--------
Confidence 456666552 333 799999988763 446899999999997 9999999999999999998544444433
Q ss_pred ceeecCCCc--cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805 224 CKFFPSAGG--CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV 287 (307)
Q Consensus 224 ~~~~~spg~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt 287 (307)
.+..+.. .....++|++......... ..+.+|..+++|++++|+.++...++.
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~~~W~~~~el~~~~~~~~~ 125 (134)
T PF00293_consen 71 --SYPSPSGDPEGEIVIFFIAELPSEQSEI---------QPQDEEISEVKWVPPDELLELLLNGRI 125 (134)
T ss_dssp --EEEETTTESSEEEEEEEEEEEEEEESEC---------HTTTTTEEEEEEEEHHHHHHHHHTTHH
T ss_pred --eecccCCCcccEEEEEEEEEEeCCcccc---------CCCCccEEEEEEEEHHHhhhchhCcch
Confidence 2333322 2456666666554332111 124449999999999999998875553
No 21
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=1.3e-15 Score=123.35 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=69.1
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc---cceE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG---CDEE 236 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~---~~e~ 236 (307)
++||++|.+.+ ++..|++|||++|+| |++.+||+||++||||+++.......... ..+..++. ....
T Consensus 12 ~vLl~~r~~~~-~~~~w~~PgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 81 (122)
T cd04673 12 RVLLVRRANPP-DAGLWSFPGGKVELG-ETLEQAALRELLEETGLEAEVGRLLTVVD--------VIERDAAGRVEFHYV 81 (122)
T ss_pred EEEEEEEcCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHhhCcEeeeceeEEEEE--------EeeccCCCccceEEE
Confidence 59999887654 345899999999998 99999999999999999985433322221 13333322 2234
Q ss_pred EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
++.|.+.... +. ....+|..++.|++++++.++..
T Consensus 82 ~~~~~~~~~~---------~~---~~~~~E~~~~~w~~~~el~~~~~ 116 (122)
T cd04673 82 LIDFLCRYLG---------GE---PVAGDDALDARWVPLDELAALSL 116 (122)
T ss_pred EEEEEEEeCC---------Cc---ccCCcccceeEEECHHHHhhCcC
Confidence 4455554321 11 12456888999999999987653
No 22
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.64 E-value=1.8e-15 Score=129.71 Aligned_cols=115 Identities=25% Similarity=0.240 Sum_probs=77.2
Q ss_pred CEEEEEEEEecCCceEEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805 145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (307)
Q Consensus 145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~ 223 (307)
.||.|++. +.++..+|||++|.+... ....|++|||++|+|||++.+||+||++||||+++. .+..++.
T Consensus 3 ~av~v~l~-~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~--~~~~l~~------- 72 (157)
T cd03426 3 AAVLVLLV-EREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD--SVEVLGR------- 72 (157)
T ss_pred eEEEEEEE-eCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc--ceEEEEE-------
Confidence 34544443 334446899988766432 345899999999995499999999999999999985 4555543
Q ss_pred ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
+..........+++|++..... . ....+++|..++.|++++++.+.
T Consensus 73 --~~~~~~~~~~~v~~~~~~~~~~-~---------~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 73 --LPPYYTRSGFVVTPVVGLVPPP-L---------PLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred --CCCccccCCCEEEEEEEEECCC-C---------CCCCCHHHhheeEEEcHHHHhCc
Confidence 1111222245567777654321 0 11245678999999999999875
No 23
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.64 E-value=7.3e-15 Score=126.29 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=87.2
Q ss_pred EEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccC
Q 021805 141 FARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYP 220 (307)
Q Consensus 141 ~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~ 220 (307)
..++++|+|+++. ++ ++||++|++. .|++|||++|+| |++.+||+||++||||+.+ ..+..++.
T Consensus 21 ~~~~~~V~ii~~~--~~--~~LL~~~~~~-----~~elPgG~vE~g-Et~~eaA~REl~EETG~~~--~~~~~lg~---- 84 (156)
T TIGR02705 21 SPNPNHVLVIPRY--KD--QWLLTEHKRR-----GLEFPGGKVEPG-ETSKEAAIREVMEETGAIV--KELHYIGQ---- 84 (156)
T ss_pred cCCCCEEEEEEEE--CC--EEEEEEEcCC-----cEECCceecCCC-CCHHHHHHHHHHHHhCcEe--eeeEEEEE----
Confidence 3457788887763 33 5889988752 499999999998 9999999999999999988 46777774
Q ss_pred CCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEE-EEchhhHhhccCChh
Q 021805 221 STGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVR-VVPYRELWRTTPDAK 286 (307)
Q Consensus 221 ~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~-wvpleel~~~i~D~k 286 (307)
++.+++.++...++|+|..... ...+|.+++. +++++++.+++..++
T Consensus 85 -----~~~~~~~~~~~~~vf~A~~~~~--------------~~~~e~~E~~~~~~~~~~~~~~~~g~ 132 (156)
T TIGR02705 85 -----YEVEGESTDFVKDVYFAEVSAL--------------ESKDDYLETKGPVLLQEIPDIIKADP 132 (156)
T ss_pred -----EEecCCCcEEEEEEEEEEEecc--------------ccCCCceeeEeEEEHHHHHHHHhcCC
Confidence 7778888889999999876411 1336777877 799999988876444
No 24
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=5.3e-15 Score=121.90 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=75.6
Q ss_pred EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 226 (307)
Q Consensus 147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~ 226 (307)
+++|++..+++..++||+++.+. ..|.+|||++|.| |++.+||+||++||||+++... +..++.+ .
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~----~~w~~PgG~ve~~-E~~~~aa~RE~~EEtG~~~~~~-~~~l~~~--------~ 68 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT----GRWIVPKGGPEKD-ESPAEAAAREAWEEAGVRGKIG-KRPLGRF--------E 68 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC----CeEECCCCCcCCC-CCHHHHHHHHHHHHhCCccccc-ceEEEEE--------E
Confidence 45565554444568999988654 4699999999998 9999999999999999987532 1445431 2
Q ss_pred ecCCC---ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 227 FPSAG---GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 227 ~~spg---~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+..++ .....+++|.+..... . . ..++.|..+++|++++++.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~f~~~~~~~-~---------~-~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 69 YRKRSKNRPPRCEVAVFPLEVTEE-L---------D-EWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred eeecCCCCCceEEEEEEEEEEecc-c---------c-CCcccCceEEEEecHHHHHHhcC
Confidence 22222 1244556666554211 0 0 12345678899999999998875
No 25
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=4.4e-15 Score=123.07 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=71.5
Q ss_pred CCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccce
Q 021805 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDE 235 (307)
Q Consensus 156 ~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e 235 (307)
++++++||++|.+. ....|.+|||++|+| |++.+||+||++||||+++.. +..... ...+|..++....
T Consensus 11 ~~~~~vLl~~r~~~--~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~--~~~~~~------~~~~~~~~~~~~~ 79 (131)
T cd04695 11 DKETKVLLLKRVKT--LGGFWCHVAGGVEAG-ETAWQAALRELKEETGISLPE--LYNADY------LEQFYEANDNRIL 79 (131)
T ss_pred CCCCEEEEEEecCC--CCCcEECCcccccCC-CCHHHHHHHHHHHHhCCCccc--cccccc------eeeEeecCCceEE
Confidence 34457999887654 234689999999998 999999999999999999852 222111 0124554443334
Q ss_pred EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
.+.+|++..... . . ...++|..+++|++++++.++..
T Consensus 80 ~~~~f~~~~~~~-~--------~--~~~~~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 80 MAPVFVGFVPPH-Q--------E--VVLNHEHTEYRWCSFAEALELAP 116 (131)
T ss_pred EEEEEEEEecCC-C--------c--cccCchhcccEecCHHHHHHhcC
Confidence 455666554211 0 0 11346888999999999998876
No 26
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=3.7e-15 Score=121.81 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=72.1
Q ss_pred EEEEEEeeecCC--CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEE
Q 021805 160 YAILTEQVRVPT--GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI 237 (307)
Q Consensus 160 ~VLLvrQ~R~p~--g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i 237 (307)
++||++|.+.|. ....|++|||++|.| |++.+||+||++||||+++....+.... .|..+ ..+...
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~~~~~~~~----------~~~~~-~~~~~~ 80 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGG-ETPLECVLRELLEEIGLTLPESRIPWFR----------VYPSA-SPPGTE 80 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCC-CCHHHHHHHHHHHHhCCcccccccceeE----------ecccC-CCCceE
Confidence 699988876532 345899999999998 9999999999999999998543332222 33333 345677
Q ss_pred EEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 238 SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 238 ~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
++|.+...... .-..+.+|..+++|++++|+.+..
T Consensus 81 ~~f~~~~~~~~----------~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 81 HVFVVPLTARE----------DAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred EEEEEEEecCC----------CccccCchhheeecccHHHHhhcc
Confidence 88877654221 012367788899999999996543
No 27
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4.9e-15 Score=121.86 Aligned_cols=110 Identities=26% Similarity=0.487 Sum_probs=72.1
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ +.++ ++||++|.+.+ .+..|++|||++|.| |++.+||.||++||||+++. .+..++.+ ..
T Consensus 3 av~~~i~-~~~~--~vLL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~--~~~~~~~~------~~ 69 (130)
T cd04681 3 AVGVLIL-NEDG--ELLVVRRAREP-GKGTLDLPGGFVDPG-ESAEEALIREIREETGLKVT--ELSYLFSL------PN 69 (130)
T ss_pred eEEEEEE-cCCC--cEEEEEecCCC-CCCcEeCCceeecCC-CCHHHHHHHHHHHHhCCccc--ceeEEEee------cc
Confidence 4555544 2233 69998876655 345899999999998 99999999999999999885 34444431 11
Q ss_pred eecCCCccceEEEE-EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805 226 FFPSAGGCDEEISL-FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW 279 (307)
Q Consensus 226 ~~~spg~~~e~i~l-f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~ 279 (307)
.++..+.....+++ |++... ... . ..+.+|...++|++++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~~~---------~-~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 70 TYPYGGMEYDTLDLFFVCQVD-DKP---------I-VKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred eeeeCCceeEEEEEEEEEEeC-CCC---------C-cCChHHhheeEEecHHHCC
Confidence 24444444444444 444431 110 0 2245688899999999984
No 28
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.62 E-value=7.7e-15 Score=120.57 Aligned_cols=117 Identities=22% Similarity=0.250 Sum_probs=75.9
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+++++++..++++.++||+++.. ..|++|||++|+| |++.+||+||++||||+++.. +..+..+.. ..
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~-----~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~--~~~~~~~~~----~~ 71 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY-----GHWDFPKGHVEPG-EDDLEAALRETEEETGITAEQ--LFIVLGFKE----TL 71 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC-----CcCcCCcCCCCCC-CCHHHHHHHHHHHHHCCChhh--hhhhcccee----EE
Confidence 45555555444445688886653 4699999999998 999999999999999999863 222211100 00
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 286 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k 286 (307)
.+. .......+++|++..... .. . ..+ +|..++.|++++++.+++....
T Consensus 72 ~~~-~~~~~~~~~~f~~~~~~~-~~--------~-~~~-~E~~~~~W~~~~e~~~~~~~~~ 120 (130)
T cd03428 72 NYQ-VRGKLKTVTYFLAELRPD-VE--------V-KLS-EEHQDYRWLPYEEALKLLTYED 120 (130)
T ss_pred Ecc-ccCcceEEEEEEEEeCCC-Cc--------c-ccc-cceeeEEeecHHHHHHHcCchh
Confidence 111 123455667777765311 10 0 113 6888999999999999886444
No 29
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=4.4e-15 Score=125.11 Aligned_cols=120 Identities=23% Similarity=0.318 Sum_probs=78.3
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCC---CCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS 221 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~ 221 (307)
+|.|+++..++++.++||.+ |.+. ..+.|++ |||++|+| |++.+||+||++||||+.+....+..++.+.
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~--R~~~~~~~pg~W~~~~gG~ve~g-Et~~~aa~REl~EEtGl~~~~~~l~~~~~~~--- 77 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQK--RSANKKTYPGLWDISSAGHILAG-ETPLEDGIRELEEELGLDVSADDLIPLGTFK--- 77 (144)
T ss_pred EEEEEEEEccCCCCEEEEEe--cCCCCCCCCCccccccCcccCCC-CCHHHHHHHHHHHHhCCCCChHHeEEeeEEE---
Confidence 45555553333335677654 4432 2348999 59999998 9999999999999999988655666665421
Q ss_pred CCceeec-CCC-ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 222 TGCKFFP-SAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 222 ~~~~~~~-spg-~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
..+. ..+ ...+..++|++........+ ..+++|..+++|++++++.+++.
T Consensus 78 ---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---------~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 78 ---IEYDHIGKLIDREFHHVYLYELKVPLEEF---------TLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred ---EeccccCCCccceEEEEEEEeccCChhhc---------CCChhHhheEEEECHHHHHHHHH
Confidence 1111 112 23455677877654221110 23567899999999999998875
No 30
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.60 E-value=9.6e-15 Score=121.19 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=68.4
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCC-ccceEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG-GCDEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg-~~~e~i~ 238 (307)
++||+++.+.+ ....|++|||++|.| |++.+||+||++||||+.+....+ ++. ..+..++ .....++
T Consensus 13 ~vLL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~~~~--~~~--------~~~~~~~~~~~~~~~ 80 (137)
T cd03427 13 KVLLLNRKKGP-GWGGWNGPGGKVEPG-ETPEECAIRELKEETGLTIDNLKL--VGI--------IKFPFPGEEERYGVF 80 (137)
T ss_pred EEEEEEecCCC-CCCeEeCCceeCCCC-CCHHHHHHHHHHHhhCeEeecceE--EEE--------EEEEcCCCCcEEEEE
Confidence 59998877655 456899999999998 999999999999999999864333 332 1233333 2344556
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
+|.+.... +. ...+.|..+++|++++++.++.
T Consensus 81 ~f~~~~~~---------~~---~~~~~e~~~~~W~~~~el~~~~ 112 (137)
T cd03427 81 VFLATEFE---------GE---PLKESEEGILDWFDIDDLPLLP 112 (137)
T ss_pred EEEECCcc---------cc---cCCCCccccceEEcHhhccccc
Confidence 66654321 11 1235566789999999998654
No 31
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=2.6e-14 Score=117.62 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=73.0
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ +++ +|||+++.+. ++..|++|||++|.| |++.+||+||++||||+++...++..+..+.... .
T Consensus 3 ~a~~iv~--~~~--~vLl~~r~~~--~~~~~~lPGG~ve~g-Et~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~---~ 72 (128)
T cd04687 3 SAKAVII--KND--KILLIKHHDD--GGVWYILPGGGQEPG-ETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHN---P 72 (128)
T ss_pred EEEEEEE--ECC--EEEEEEEEcC--CCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCccccCcEEEEEEEeccC---c
Confidence 3444443 344 6999987654 235799999999998 9999999999999999999765655554310000 0
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
........+...++|++..... ... . .....+.|..+++|++++++.++.
T Consensus 73 ~~~~~~~~~~i~~~f~~~~~~~-~~~-----~-~~~~~~~~~~~~~W~~~~~l~~~~ 122 (128)
T cd04687 73 TSELPGHFHQVELMFECKIKSG-TPA-----K-TPSKPDPNQIGVEWLKLKELGDIP 122 (128)
T ss_pred cccCCCceeEEEEEEEEEECCC-Ccc-----c-ccCCCCCCEEeeEEEcHHHhCccc
Confidence 0001112233445566654321 100 0 001133456789999999997654
No 32
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.3e-14 Score=119.05 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=64.4
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc---cceE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG---CDEE 236 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~---~~e~ 236 (307)
++||+++.+ .+..|++|||++|.| |++.+||+||++||||+++....+..+.. ..+ .++. ....
T Consensus 15 ~iLL~r~~~---~~~~w~lPGG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~--------~~~-~~~~~~~~~~~ 81 (125)
T cd04696 15 RILLVRTTK---WRGLWGVPGGKVEWG-ETLEEALKREFREETGLKLRDIKFAMVQE--------AIF-SEEFHKPAHFV 81 (125)
T ss_pred CEEEEEccC---CCCcEeCCceeccCC-CCHHHHHHHHHHHHhCCcccccceEEEEE--------Eec-cCCCCCccEEE
Confidence 688887543 235799999999998 99999999999999999986544433321 112 1222 1222
Q ss_pred EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
+..|.+... .. . ....+|..+++|++++++.++-
T Consensus 82 ~~~~~~~~~--~~-------~---~~~~~e~~~~~W~~~~el~~~~ 115 (125)
T cd04696 82 LFDFFARTD--GT-------E---VTPNEEIVEWEWVTPEEALDYP 115 (125)
T ss_pred EEEEEEEec--CC-------c---ccCCcccceeEEECHHHHhcCC
Confidence 333544432 11 1 1244688999999999998764
No 33
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.4e-14 Score=118.95 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=64.4
Q ss_pred eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
++|||++++.. .+..|++|||++|.| |++.+||+||++||||+.+.... .+.. .+..+........
T Consensus 14 ~~vLl~~r~~~--~~~~w~~PGG~ve~g-Et~~~aa~RE~~EE~Gl~~~~~~--~~~~---------~~~~~~~~~~~~~ 79 (127)
T cd04670 14 NEVLVVQERNK--TPNGWKLPGGLVDPG-EDIFDGAVREVLEETGIDTEFVS--VVGF---------RHAHPGAFGKSDL 79 (127)
T ss_pred CeEEEEEccCC--CCCcEECCCccCCCC-CCHHHHHHHHHHHHHCCCcceeE--EEEE---------EecCCCCcCceeE
Confidence 36888876443 456899999999998 99999999999999999885322 2221 1111222222223
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+|++... ... ... ..+++|..+++|++++++.+...
T Consensus 80 ~~~~~~~-~~~------~~~--~~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04670 80 YFICRLK-PLS------FDI--NFDTSEIAAAKWMPLEEYISQPI 115 (127)
T ss_pred EEEEEEc-cCc------CcC--CCChhhhheeEEEcHHHHhcchh
Confidence 3443321 110 110 23567888999999999976544
No 34
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.1e-14 Score=119.23 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=66.3
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
+|||+++.+. +...|++|||++|.| |++.+||+||++||||+++....+.. .+..+ +...++
T Consensus 13 ~vLL~~r~~~--~~~~w~lPGG~ve~g-Es~~~a~~REl~EEtGl~~~~~~~~~------------~~~~~---~~~~~~ 74 (121)
T cd04669 13 EILLIRRIKP--GKTYYVFPGGGIEEG-ETPEEAAKREALEELGLDVRVEEIFL------------IVNQN---GRTEHY 74 (121)
T ss_pred EEEEEEEecC--CCCcEECCceeccCC-CCHHHHHHHHHHHhhCeeEeeeeEEE------------EEeeC---CcEEEE
Confidence 6999887653 345899999999998 99999999999999999985433222 22222 234567
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
|.|..... . +....+......++++.+++.||+++++..+-
T Consensus 75 f~~~~~~g-~-~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~ 115 (121)
T cd04669 75 FLARVISG-K-LGLGVGEEFERQSDDNQYHPVWVDLDQLETIP 115 (121)
T ss_pred EEEEEECC-e-ecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence 77754321 1 00000000001124567889999999998753
No 35
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.59 E-value=1.3e-14 Score=119.39 Aligned_cols=119 Identities=20% Similarity=0.059 Sum_probs=76.1
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+|+++. ..+.+++||++|.+. ....|++|||++|.| |++.+||+||++||||+.+.. +..+..... ....
T Consensus 3 ~~~v~~~~-~~~~~~vLL~~r~~~--~~~~w~~PgG~ve~~-Es~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~--~~~~ 74 (129)
T cd04664 3 SVLVVPYR-LTGEGRVLLLRRSDK--YAGFWQSVTGGIEDG-ESPAEAARREVAEETGLDPER--LTLLDRGAS--IAFV 74 (129)
T ss_pred EEEEEEEE-eCCCCEEEEEEeCCC--CCCcccccCcccCCC-CCHHHHHHHHHHHHHCCChhh--eEEEeeccc--cccc
Confidence 56666553 212347999887664 455899999999998 999999999999999999742 333321100 0000
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD 284 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D 284 (307)
.+..++ ....+++|++...... ....++|..+++|++++++.+++..
T Consensus 75 ~~~~~~-~~~~~~~f~~~~~~~~-----------~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 75 EFTDNG-RVWTEHPFAFHLPSDA-----------VVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred ccCCCc-eEEEEeEEEEEcCCCC-----------cccCCccccccEecCHHHHHHHHcC
Confidence 112222 3445667776543210 0124567889999999999988763
No 36
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.9e-14 Score=118.65 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=68.0
Q ss_pred eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
++|||+++.+.+. +..|++|||++|.| |++.+||+||++||||+++...++..+ +..+ .....+
T Consensus 12 ~~vLl~~r~~~~~-~~~w~lPgG~ve~g-Et~~~aa~REl~EEtG~~~~~~~~~~~------------~~~~--~~~~~~ 75 (123)
T cd04671 12 GEVLLIQEAKRSC-RGKWYLPAGRMEPG-ETIEEAVKREVKEETGLDCEPTTLLSV------------EEQG--GSWFRF 75 (123)
T ss_pred CEEEEEEecCCCC-CCeEECceeecCCC-CCHHHHHHHHHHHHHCCeeecceEEEE------------EccC--CeEEEE
Confidence 3699999887653 45899999999998 999999999999999999964333221 2122 223455
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+|.+..... .+. ....+++|..+++|++++++...+.
T Consensus 76 ~f~a~~~~g--~~~------~~~~~~~e~~~~~W~~~~el~~~~~ 112 (123)
T cd04671 76 VFTGNITGG--DLK------TEKEADSESLQARWYSNKDLPLPLR 112 (123)
T ss_pred EEEEEEeCC--eEc------cCCCCCcceEEEEEECHHHCCCccc
Confidence 666654211 110 0011456788999999999954444
No 37
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=6.3e-15 Score=121.14 Aligned_cols=115 Identities=24% Similarity=0.282 Sum_probs=73.8
Q ss_pred EEEEEEEecCCceEEEEEEeeecC-CCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805 147 VAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 224 (307)
Q Consensus 147 VaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~ 224 (307)
|.++++ ++++ +|||++|.+.. .....|++| ||++|.| |++ +||+||++||||+++....+..+..
T Consensus 3 v~v~~~-~~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~g-E~~-~aa~REl~EEtGl~~~~~~~~~~~~-------- 69 (127)
T cd04693 3 VHVCIF-NSKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAG-ETS-TAAEREVKEELGLELDFSELRPLFR-------- 69 (127)
T ss_pred EEEEEE-eCCC--eEEEEEccCCCCCCCCcccccCCCcCCCC-CCH-HHHHHHHHHHhCCCcChhhcEEEEE--------
Confidence 444443 2333 68887665432 233579998 8999998 999 9999999999999986555555543
Q ss_pred eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805 225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV 287 (307)
Q Consensus 225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt 287 (307)
..+..++.. .+.+|.+... . +. -..+++|..+++|++++|+.+++.+++.
T Consensus 70 ~~~~~~~~~--~~~~~~~~~~-~--------~~--~~~~~~E~~~~~w~~~~el~~~~~~~~~ 119 (127)
T cd04693 70 YFFEAEGFD--DYYLFYADVE-I--------GK--LILQKEEVDEVKFVSKDEIDGLIGHGEF 119 (127)
T ss_pred EEeecCCeE--EEEEEEecCc-c--------cc--cccCHHHhhhEEEeCHHHHHHHHhcCCc
Confidence 123333322 2333433211 1 10 0235678889999999999999886653
No 38
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.58 E-value=2.7e-14 Score=120.87 Aligned_cols=116 Identities=13% Similarity=0.222 Sum_probs=72.8
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ +.++ +|||+++.+.|. +..|++|||++|.| |++.+||+||++||||+++...++..++.+ ..
T Consensus 14 ~v~~vI~-~~~g--~vLl~~R~~~p~-~g~w~lPGG~ve~g-Es~~~aa~RE~~EE~Gl~v~~~~~~~l~~~------~~ 82 (144)
T cd03430 14 SIDLIVE-NEDG--QYLLGKRTNRPA-QGYWFVPGGRIRKN-ETLTEAFERIAKDELGLEFLISDAELLGVF------EH 82 (144)
T ss_pred EEEEEEE-eCCC--eEEEEEccCCCC-CCcEECCCceecCC-CCHHHHHHHHHHHHHCCCcccccceEEEEE------EE
Confidence 4445544 2234 698887765443 45799999999998 999999999999999999865522223211 01
Q ss_pred eec----CCCccceE-EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 226 FFP----SAGGCDEE-ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 226 ~~~----spg~~~e~-i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
.+. .++..... ..+|.+... . +.. ...++|..+++|++++++.++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~--~~~~~e~~~~~W~~~~el~~~~~ 134 (144)
T cd03430 83 FYDDNFFGDDFSTHYVVLGYVLKLS-S--------NEL--LLPDEQHSEYQWLTSDELLADDD 134 (144)
T ss_pred EeccccccCCCccEEEEEEEEEEEc-C--------Ccc--cCCchhccEeEEecHHHHhcCCC
Confidence 222 12222223 333544432 1 111 23567888999999999987544
No 39
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.58 E-value=1.9e-14 Score=119.72 Aligned_cols=96 Identities=23% Similarity=0.284 Sum_probs=69.1
Q ss_pred eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
+++||++|.+.| ...|.+|||+++.| |++.+||+||++||||+++. .+..++.. .+..+ +..+.
T Consensus 12 ~~vLL~~r~~~~--~~~w~lPgG~ie~g-Et~~~aA~REl~EEtGl~~~--~~~~l~~~--------~~~~~---~~~~~ 75 (131)
T cd03429 12 DRILLARQPRFP--PGMYSLLAGFVEPG-ESLEEAVRREVKEEVGIRVK--NIRYVGSQ--------PWPFP---SSLML 75 (131)
T ss_pred CEEEEEEecCCC--CCcCcCCcccccCC-CCHHHHHhhhhhhccCceee--eeEEEeec--------CCCCC---ceEEE
Confidence 479999887765 34689999999998 99999999999999999984 45555421 12222 34556
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
+|++.... . .. ..+++|..++.|++++++.++
T Consensus 76 ~f~~~~~~--~-------~~--~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 76 GFTAEADS--G-------EI--VVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEEcC--C-------cc--cCCchhhhccEeecHHHHhhc
Confidence 67665421 1 10 235678888999999999875
No 40
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1e-14 Score=120.26 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=74.0
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCC-CCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPT-GRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~ 223 (307)
++.|+++ +.++ +|||+++...+. ..+.|++ |||++++| |++.+||+||++||||+++. .+..++.
T Consensus 2 ~~~v~i~-~~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~g-E~~~~aa~REl~EEtGl~~~--~l~~~~~------- 68 (126)
T cd04697 2 ATYIFVF-NSEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAG-ESYLQNAQRELEEELGIDGV--QLTPLGL------- 68 (126)
T ss_pred eEEEEEE-cCCC--eEEEEECCCCCCCCCCcccCcCCcccCCC-CCHHHHHHHHHHHHHCCCcc--ccEEeeE-------
Confidence 3445544 2333 688854432221 2347999 68999998 99999999999999999884 5666654
Q ss_pred ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
++.+.+......++|.+....+ . ..+++|..+++|++++++.+++.
T Consensus 69 --~~~~~~~~~~~~~~f~~~~~~~----------~--~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 69 --FYYDTDGNRVWGKVFSCVYDGP----------L--KLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred --EEecCCCceEEEEEEEEEECCC----------C--CCCHhHhhheEEcCHHHHHHHhh
Confidence 2333333445556776643211 1 23567888999999999999876
No 41
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.58 E-value=4.6e-14 Score=121.10 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=78.7
Q ss_pred CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 224 (307)
Q Consensus 145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~ 224 (307)
.+|+++++. .++ +|||++|.+. +..|++|||++++| |++.+||.||++||||+++. .+..++.+.. .
T Consensus 9 ~~v~~~i~~-~~g--~vLL~~r~~~---~~~w~~P~G~~~~g-E~~~~aa~REl~EEtG~~~~--~~~~~~~~~~----~ 75 (156)
T PRK00714 9 PNVGIILLN-RQG--QVFWGRRIGQ---GHSWQFPQGGIDPG-ETPEQAMYRELYEEVGLRPE--DVEILAETRD----W 75 (156)
T ss_pred CeEEEEEEe-cCC--EEEEEEEcCC---CCeEECCcccCCCC-cCHHHHHHHHHHHHhCCCcc--ceEEEEEcCC----e
Confidence 466666552 344 6999888653 25799999999998 99999999999999999874 3333432100 0
Q ss_pred eee---------cCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 225 KFF---------PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 225 ~~~---------~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
..| ..++..++..++|++........+ .. ...+++|..+++|++++|+.+++.
T Consensus 76 ~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~-----~l-~~~~~~E~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 76 LRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEI-----NL-NTTSHPEFDAWRWVSYWYPLDQVV 137 (156)
T ss_pred EEecCcHHHhhccCCcccCcEEEEEEEEecCCCccc-----cC-CCCCCCCeeeeEeCCHHHHHHhch
Confidence 011 234445556777887653211111 00 012457999999999999999875
No 42
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.58 E-value=6.4e-14 Score=122.55 Aligned_cols=121 Identities=21% Similarity=0.178 Sum_probs=79.4
Q ss_pred EEEEEEEEecCC-ceEEEEEEeeecCC---CCeEE-EccceecCCCCCCHHHHHHHHHHHHhCCcccccc-eeecccccc
Q 021805 146 AVAVLILLDSEG-ETYAILTEQVRVPT---GRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED-MIDLTAFLY 219 (307)
Q Consensus 146 aVaVl~il~~~g-~~~VLLvrQ~R~p~---g~~~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~-L~~L~~l~~ 219 (307)
+|.|.+++.+.+ ..++++.+ |... .+.+| ++|||++++| |++.+||+||++||||+++...+ +..++.+
T Consensus 34 ~v~~~~~~~~~~~~~~l~lqr--Rs~~K~~~Pg~wd~~~~G~v~~g-E~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~-- 108 (180)
T cd03676 34 GVHLNGYVRDEDGGLRIWIPR--RSPTKATWPGMLDNLVAGGLGHG-EGPEETLVKECDEEAGLPEDLVRQLKPVGVV-- 108 (180)
T ss_pred EEEEEEEEEcCCCCeEEEEEe--ccCCCCCCCCceeeecccCCCCC-CCHHHHHHHHHHHHhCCCHHHHhhceeccEE--
Confidence 555554443332 34676644 3333 24578 6999999998 99999999999999999885322 4444321
Q ss_pred CCCCceee--cCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805 220 PSTGCKFF--PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA 285 (307)
Q Consensus 220 ~~~~~~~~--~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ 285 (307)
...+ ...+..++.+++|.+....+.. -..+++|.+++.|++++|+.+++.++
T Consensus 109 ----~~~~~~~~~~~~~e~~~~f~~~~~~~~~----------~~~~~~Ev~~~~~~~~~el~~~l~~g 162 (180)
T cd03676 109 ----SYLREGEAGGLQPEVEYVYDLELPPDFI----------PAPQDGEVESFRLLTIDEVLRALKEG 162 (180)
T ss_pred ----EEEEEcCCCcEeeeEEEEEEEEcCCCCe----------eCCCCCcEeEEEEECHHHHHHHHHcC
Confidence 1133 2344567778888765321110 02367899999999999999988643
No 43
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.58 E-value=2e-14 Score=119.03 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=67.5
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
++||++|.+.+ +...|++|||++|.| |++.+||+||++||||+++... ..++ .+..++. ...+++
T Consensus 25 ~vLL~kr~~~~-~~g~w~lPgG~ve~g-E~~~~a~~REl~EEtGl~~~~~--~~~~----------~~~~~~~-~~~~~~ 89 (130)
T cd04511 25 KVLLCRRAIEP-RHGFWTLPAGFMENG-ETTEQGALRETWEEAGARVEID--GLYA----------VYSVPHI-SQVYMF 89 (130)
T ss_pred EEEEEEecCCC-CCCeEECCcccccCC-CCHHHHHHHHHHHHhCCEEEee--eEEE----------EEecCCc-eEEEEE
Confidence 69999987655 445899999999998 9999999999999999998432 2222 4444543 345666
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW 279 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~ 279 (307)
|+++.... . .....|..+++|++++++.
T Consensus 90 f~~~~~~~---------~---~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 90 YRARLLDL---------D---FAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEEEcCC---------c---ccCCcchhceEEECHHHCC
Confidence 77765321 0 1234577889999999996
No 44
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=3e-14 Score=116.61 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=64.9
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc-ceEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC-DEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~-~e~i~ 238 (307)
++||++|.+ ...|++|||++|+| |++.+||+||++||||+.+...++..+... ..+..++.. +....
T Consensus 14 ~vLL~~~~~----~~~w~~PGG~ve~g-Es~~~aa~REl~EEtG~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 81 (123)
T cd04672 14 KILLVREKS----DGLWSLPGGWADVG-LSPAENVVKEVKEETGLDVKVRKLAAVDDR-------NKHHPPPQPYQVYKL 81 (123)
T ss_pred EEEEEEEcC----CCcEeCCccccCCC-CCHHHHHHHHHHHHhCCeeeEeEEEEEecc-------ccccCCCCceEEEEE
Confidence 699988865 24699999999998 999999999999999998854333333210 011111111 22223
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+|++... . +. ....+|..+++|++++++.++..
T Consensus 82 ~f~~~~~-~--------~~---~~~~~E~~~~~W~~~~el~~l~~ 114 (123)
T cd04672 82 FFLCEIL-G--------GE---FKPNIETSEVGFFALDDLPPLSE 114 (123)
T ss_pred EEEEEec-C--------Cc---ccCCCceeeeEEECHHHCccccc
Confidence 4544432 1 11 12346888999999999988764
No 45
>PLN02325 nudix hydrolase
Probab=99.57 E-value=3.2e-14 Score=120.52 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=67.8
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
+|||+++.+.+ +...|.+|||++|.| |++.+||+||++||||+++...++..+.. ..+..++...+.+.+
T Consensus 21 ~vLL~rr~~~~-~~g~W~lPGG~ve~g-Es~~~aa~REv~EEtGl~v~~~~~l~~~~--------~~~~~~~~~~~~i~~ 90 (144)
T PLN02325 21 SVLLGRRRSSI-GDSTFALPGGHLEFG-ESFEECAAREVKEETGLEIEKIELLTVTN--------NVFLEEPKPSHYVTV 90 (144)
T ss_pred EEEEEEecCCC-CCCeEECCceeCCCC-CCHHHHHHHHHHHHHCCCCcceEEEEEec--------ceeecCCCCcEEEEE
Confidence 68887765443 445799999999998 99999999999999999986544433321 123333333344444
Q ss_pred -EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 240 -FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 240 -f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
|.+... +.. .. ....+.+|..++.|++++++...+.
T Consensus 91 ~f~~~~~-~~~------~~-~~~~e~~e~~~~~W~~~d~Lp~~~~ 127 (144)
T PLN02325 91 FMRAVLA-DPS------QV-PQNLEPEKCYGWDWYEWDNLPEPLF 127 (144)
T ss_pred EEEEEEC-CCC------CC-CCcCCchhcCceEEEChHHCChhhh
Confidence 434321 111 00 0012445667899999999987554
No 46
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.57 E-value=5.5e-14 Score=117.83 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=65.0
Q ss_pred EEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 160 YAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
+|||+++.... ..+..|++|||++|+| |++.+||+||++||||+++....+.... + ........|+. |..++..+
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~~~ 91 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPG-ERIEEALRREIREELGEQLLLTEITPWT-F-RDDIRTKTYAD-GRKEEIYM 91 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCC-CCHHHHHHHHHHHHHCCceeeeeecccc-c-cccceeEEecC-CCceeEEE
Confidence 58887654321 2345899999999998 9999999999999999987433222110 0 00000012221 22233333
Q ss_pred EEEE-EEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 239 LFLY-RGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 239 lf~~-~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+|++ ...... +. ....+|..++.|++++|+.++..
T Consensus 92 ~~~~~~~~~~~-------~~---~~~~~E~~~~~w~~~~el~~l~~ 127 (141)
T PRK15472 92 IYLIFDCVSAN-------RD---VKINEEFQDYAWVKPEDLVHYDL 127 (141)
T ss_pred EEEEEEeecCC-------Cc---ccCChhhheEEEccHHHhccccc
Confidence 3332 221111 11 12446888999999999998764
No 47
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.55 E-value=5.5e-14 Score=117.71 Aligned_cols=114 Identities=23% Similarity=0.239 Sum_probs=68.5
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ ++.+++|||++|.+. ..|.+|||++|+| |++.+||+||++||||+++.......+.. + ..
T Consensus 4 ~~~~~v~--~~~~~~vLLv~r~~~----~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~~~~~~--~----~~ 70 (138)
T cd03674 4 TASAFVV--NPDRGKVLLTHHRKL----GSWLQPGGHIDPD-ESLLEAALRELREETGIELLGLRPLSVLV--D----LD 70 (138)
T ss_pred EEEEEEE--eCCCCeEEEEEEcCC----CcEECCceecCCC-CCHHHHHHHHHHHHHCCCcccceeccccc--c----ce
Confidence 4555554 332247999987652 3589999999998 99999999999999999875322211100 0 01
Q ss_pred eecCCCcc------ce-EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 226 FFPSAGGC------DE-EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 226 ~~~spg~~------~e-~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
.+..++.. .. ...+|++..... ... ..+++|..++.|++++++.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~---------~~~-~~~~~E~~~~~W~~~~el~~~~ 124 (138)
T cd03674 71 VHPIDGHPKRGVPGHLHLDLRFLAVAPAD---------DVA-PPKSDESDAVRWFPLDELASLE 124 (138)
T ss_pred eEeecCCCCCCCCCcEEEEEEEEEEccCc---------ccc-CCCCCcccccEEEcHHHhhhcc
Confidence 22222221 11 223465543211 110 1256788899999999996553
No 48
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.55 E-value=6.2e-14 Score=121.00 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=70.4
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccc--cceeeccccccCCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL--EDMIDLTAFLYPSTG 223 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~--~~L~~L~~l~~~~~~ 223 (307)
+|++++. ++ .++|||+++...+ ....|++|||++|.| |++.+||+||++||||+.+.. ..+..+..
T Consensus 19 ~v~~vI~--~~-~g~VLL~kR~~~~-~~g~W~lPGG~VE~G-Et~~~Aa~REl~EEtGl~v~~~~~~~~~~~~------- 86 (159)
T PRK15434 19 SLDFIVE--NS-RGEFLLGKRTNRP-AQGYWFVPGGRVQKD-ETLEAAFERLTMAELGLRLPITAGQFYGVWQ------- 86 (159)
T ss_pred EEEEEEE--CC-CCEEEEEEccCCC-CCCcEECCceecCCC-CCHHHHHHHHHHHHHCCccccccceEEEEEE-------
Confidence 4444443 32 2469888765333 345899999999998 999999999999999999742 23322211
Q ss_pred ceeecC-CCc---c-ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 224 CKFFPS-AGG---C-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 224 ~~~~~s-pg~---~-~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
..|.. +.. . +..+.+|.+.... +.. ..+++|..+++|++++++.+..
T Consensus 87 -~~~~~~~~~~~~~~~~i~~~f~~~~~~---------g~~--~~~~~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 87 -HFYDDNFSGTDFTTHYVVLGFRLRVAE---------EDL--LLPDEQHDDYRWLTPDALLASD 138 (159)
T ss_pred -eecccccCCCccceEEEEEEEEEEecC---------Ccc--cCChHHeeEEEEEeHHHhhhcc
Confidence 12221 111 1 2233445554321 111 2245689999999999998753
No 49
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=7.8e-14 Score=114.34 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=67.9
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc-cceEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG-CDEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~-~~e~i~ 238 (307)
+|||+++.+ ...|++|||++|.| |++.+||.||++||||+++.... .++.. ...+...+. .+..++
T Consensus 13 ~vLl~~~~~----~~~w~lPgG~ve~g-Es~~~aa~RE~~EEtGl~~~~~~--~~~~~------~~~~~~~~~~~~~~~~ 79 (126)
T cd04688 13 KLLVQKNPD----ETFYRPPGGGIEFG-ESSEEALIREFKEELGLKIEITR--LLGVV------ENIFTYNGKPGHEIEF 79 (126)
T ss_pred EEEEEEeCC----CCeEECCCccccCC-CCHHHHHHHHHHHHhCCceecce--eeEEE------EEeeccCCcccEEEEE
Confidence 588876543 34799999999998 99999999999999999885433 33221 113333333 455566
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
+|.+....... . ........+++|..++.|++++++..+
T Consensus 80 ~f~~~~~~~~~-~---~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 80 YYLVTLLDESL-Y---QQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred EEEEEeCCCcc-c---ccccceeccCCCEEEEEEeeHHHcccC
Confidence 77776532110 0 000000125678999999999999755
No 50
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.54 E-value=8.9e-14 Score=113.85 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=65.4
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc-eEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD-EEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~-e~i~ 238 (307)
++||+++.. ...|++|||++|+| |++.+||+||++||||+++.. ...++.+ ...+..++... ...+
T Consensus 13 ~vLlv~~~~----~~~~~lPGG~ve~g-Et~~~aa~REl~EEtGl~~~~--~~~l~~~------~~~~~~~~~~~~~~~~ 79 (125)
T cd04689 13 KVLLARVIG----QPHYFLPGGHVEPG-ETAENALRRELQEELGVAVSD--GRFLGAI------ENQWHEKGVRTHEINH 79 (125)
T ss_pred EEEEEEecC----CCCEECCCCcCCCC-CCHHHHHHHHHHHHhCceeec--cEEEEEE------eeeeccCCceEEEEEE
Confidence 599987632 24699999999998 999999999999999999853 3333321 12344444433 3445
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW 279 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~ 279 (307)
+|.+....... . .....++|..+++|++++++.
T Consensus 80 ~f~~~~~~~~~------~--~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 80 IFAVESSWLAS------D--GPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred EEEEEcccccc------c--CCccCccceEEEEEccHHHcc
Confidence 66665432110 0 112345678899999999964
No 51
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.54 E-value=8e-14 Score=128.99 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=74.1
Q ss_pred eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
+++||++|.|.+. ..|.+|||++|+| |++++||+||++||||+++. ++..++. ..++. .+..++
T Consensus 143 ~~iLL~rr~~~~~--g~wslPgG~vE~G-Es~eeAa~REv~EEtGl~v~--~~~~~~s--------~~~~~---p~~lm~ 206 (256)
T PRK00241 143 DEILLARHPRHRN--GVYTVLAGFVEVG-ETLEQCVAREVMEESGIKVK--NLRYVGS--------QPWPF---PHSLML 206 (256)
T ss_pred CEEEEEEccCCCC--CcEeCcccCCCCC-CCHHHHhhhhhhhccCceee--eeEEEEe--------EeecC---CCeEEE
Confidence 3799999988763 4699999999998 99999999999999999984 5555543 12332 245667
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA 285 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ 285 (307)
.|.+..... + + ..+++|..+++|++++|+..+..+.
T Consensus 207 ~f~a~~~~~-~-~---------~~~~~Ei~~a~W~~~del~~lp~~~ 242 (256)
T PRK00241 207 GFHADYDSG-E-I---------VFDPKEIADAQWFRYDELPLLPPSG 242 (256)
T ss_pred EEEEEecCC-c-c---------cCCcccEEEEEEECHHHCcccCCch
Confidence 777764311 1 1 2356788999999999998776544
No 52
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.53 E-value=1.4e-13 Score=114.32 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=72.0
Q ss_pred EEEEEEEEecCCceEEEEEEeeec---CCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRV---PTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST 222 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~---p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~ 222 (307)
+++++++..++++.+|||++|.+. ......|++|||++|.| |++.+||+||++||||+++. ..+..+..
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~-E~~~~aA~REl~EEtGl~~~-~~~~~l~~------ 73 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEG-EDPLLAAKREFSEETGFCVD-GPFIDLGS------ 73 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCC-cCHHHHHHHHHHHHhCCcce-eeEEeEEE------
Confidence 455665544555567999987321 02345899999999998 99999999999999999986 34444432
Q ss_pred CceeecCCCccceEEEEEEEEEechhHHHHHh------ccCCCccCCCCceEEEEEEch
Q 021805 223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL------QGKETGLRDHGELIKVRVVPY 275 (307)
Q Consensus 223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~------~g~~~g~~~~~E~i~v~wvpl 275 (307)
++...+ ..+++|+++...+...+... ..........+|..++.|+|+
T Consensus 74 ---~~~~~~---~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 74 ---LKQSGG---KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred ---EECCCC---eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 222222 25666666655444322110 010111222578888999874
No 53
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=7.8e-14 Score=112.67 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=65.5
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
++||++|.. ...|++|||++++| |++.+||+||++||||+.+....+..++.+.. ..+..++ ....+++
T Consensus 13 ~vLl~~r~~----~~~w~~PgG~ve~~-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~ 81 (118)
T cd04690 13 RVLLVRKRG----TDVFYLPGGKIEAG-ETPLQALIRELSEELGLDLDPDSLEYLGTFRA-----PAANEPG-VDVRATV 81 (118)
T ss_pred eEEEEEECC----CCcEECCCCccCCC-CCHHHHHHHHHHHHHCCccChhheEEEEEEec-----ccccCCC-cEEEEEE
Confidence 688887642 24699999999998 99999999999999999986434666653210 0011122 3445666
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhh
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR 280 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~ 280 (307)
|++.... . ....+|..+++|++++++..
T Consensus 82 f~~~~~~---~----------~~~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 82 YVAELTG---E----------PVPAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EEEcccC---C----------cCCCchhhccEEecHHHccc
Confidence 7664321 0 12456888899999999743
No 54
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=1.3e-13 Score=113.40 Aligned_cols=115 Identities=22% Similarity=0.305 Sum_probs=70.6
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ ++++ ++||+++.. . ..|++|||++++| |++.+||+||++||||+++... ..++.+.. ..
T Consensus 9 ~~~~~v~-~~~~--~vLL~~r~~--~--~~w~~PgG~v~~g-Et~~~aa~REl~EE~Gi~~~~~--~~~~~~~~----~~ 74 (132)
T cd04677 9 GAGVILL-NEQG--EVLLQKRSD--T--GDWGLPGGAMELG-ESLEETARRELKEETGLEVEEL--ELLGVYSG----KE 74 (132)
T ss_pred ceEEEEE-eCCC--CEEEEEecC--C--CcEECCeeecCCC-CCHHHHHHHHHHHHhCCeeeee--EEEEEecC----Cc
Confidence 4444443 2334 588865432 2 4699999999998 9999999999999999998643 33321100 01
Q ss_pred eec--CCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805 226 FFP--SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD 284 (307)
Q Consensus 226 ~~~--spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D 284 (307)
.|. ..+.....+.+|++..... +.. ..+.+|..+++|++++++.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 75 FYVKPNGDDEQYIVTLYYVTKVFG--------GKL--VPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred eeecCCCCcEEEEEEEEEEEeccC--------Ccc--cCCCCceeeEEEEChhHCccchhH
Confidence 222 2333334444444433211 110 235678889999999999887764
No 55
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=1.1e-13 Score=112.84 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=65.0
Q ss_pred EEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 160 YAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
++||+++.+.+. .+..|++|||.+|+| |++.+||+||++||||+++....+. .. ...+...+.......
T Consensus 14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~~~~~~--~~-------~~~~~~~~~~~~~~~ 83 (129)
T cd04699 14 RILILKRSKDERTAPGKWELPGGKVEEG-ETFEEALKREVYEETGLTVTPFLRY--PS-------TVTHEDSGVYNVIYL 83 (129)
T ss_pred cEEEEEecCCCCCCCCcCcCCccCccCC-CCHHHHHHHHHHHhhCcEEEeeeee--eE-------EEEEcCCCEEEEEEE
Confidence 588887765542 356899999999998 9999999999999999988533221 11 012322221222223
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+|.+..... . ....+|...+.|++++++..+..
T Consensus 84 ~~~~~~~~~-~-----------~~~~~e~~~~~w~~~~el~~~~~ 116 (129)
T cd04699 84 VFVCEALSG-A-----------VKLSDEHEEYAWVTLEELAILKA 116 (129)
T ss_pred EEEeeecCC-c-----------ccCChhheEEEEecHHHhhhhhc
Confidence 344332211 0 12456778899999999855443
No 56
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.51 E-value=2e-13 Score=119.95 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=66.0
Q ss_pred eEEEEEEeeecCC--CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceE
Q 021805 159 TYAILTEQVRVPT--GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE 236 (307)
Q Consensus 159 ~~VLLvrQ~R~p~--g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~ 236 (307)
++|||.++..... .++.|.+|||++++| |++.+||+|||+||||+.+. .+..++. ++.+.......
T Consensus 49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~G-Es~~eAA~REL~EEtGl~~~--~~~~~~~---------~~~~~~~~~~~ 116 (180)
T PRK15393 49 GKILVQRRTETKDFLPGMLDATAGGVVQAG-EQLLESARREAEEELGIAGV--PFAEHGQ---------FYFEDENCRVW 116 (180)
T ss_pred CeEEEEEeCCCCCCCCCcccccCCCcCCCC-CCHHHHHHHHHHHHHCCCCc--cceecee---------EEecCCCceEE
Confidence 3688754432211 122346899999998 99999999999999999863 3444432 34444444444
Q ss_pred EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
.++|.+.. .. .. ..+++|..+++|++++++.+++
T Consensus 117 ~~~f~~~~--~~--------~~--~~~~~E~~~~~W~~~~el~~~~ 150 (180)
T PRK15393 117 GALFSCVS--HG--------PF--ALQEEEVSEVCWMTPEEITARC 150 (180)
T ss_pred EEEEEEEe--CC--------CC--CCChHHeeEEEECCHHHHhhhh
Confidence 45565432 11 11 2367799999999999999885
No 57
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.5e-13 Score=113.01 Aligned_cols=114 Identities=21% Similarity=0.184 Sum_probs=69.4
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ ++. +++||+++... ..+..|.+|||++++| |++.+||.||++||||+++.. +..++.. ..
T Consensus 4 ~v~~ii~--~~~-~~iLl~~r~~~-~~~~~w~~PGG~ve~g-Et~~~Aa~REl~EE~Gl~~~~--~~~~~~~------~~ 70 (129)
T cd04678 4 GVGVFVL--NPK-GKVLLGKRKGS-HGAGTWALPGGHLEFG-ESFEECAAREVLEETGLHIEN--VQFLTVT------ND 70 (129)
T ss_pred EEEEEEE--CCC-CeEEEEeccCC-CCCCeEECCcccccCC-CCHHHHHHHHHHHHhCCcccc--eEEEEEE------eE
Confidence 3444543 332 36888876543 2445899999999998 999999999999999999853 3333211 01
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
.+...+ ......+|.+........ ....+.+|...++|++++++.++
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 71 VFEEEG-KHYVTIFVKAEVDDGEAE--------PNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EeCCCC-cEEEEEEEEEEeCCCCcc--------cCCCCCceeCceEEeCHHHCCCc
Confidence 222222 222333444443211100 00114567778999999999876
No 58
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.5e-13 Score=110.71 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=66.1
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
++||+++.+ ..|++|||++++| |++.+||.||++||||+++. .+..+.. +.. .+...++
T Consensus 12 ~vLlv~r~~-----~~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~~~~----------~~~---~~~~~~~ 70 (112)
T cd04667 12 RVLLVRKSG-----SRWALPGGKIEPG-ETPLQAARRELQEETGLQGL--DLLYLFH----------VDG---GSTRHHV 70 (112)
T ss_pred EEEEEEcCC-----CcEeCCCCcCCCC-CCHHHHHHHHHHHHhCCccc--ceEEEEE----------EeC---CCEEEEE
Confidence 688887643 4699999999998 99999999999999999874 4555442 211 1344566
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
|++..... .. ...++|..++.|++++++.++..
T Consensus 71 f~~~~~~~---------~~--~~~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 71 FVASVPPS---------AQ--PKPSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred EEEEcCCc---------CC--CCCchheeEEEEecHHHhhhccc
Confidence 76643211 00 12457889999999999988765
No 59
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.6e-13 Score=110.23 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=69.0
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|+++++ ++ ++++||++|... ..|++|||++|.| |++.+||+||++||||+++....+...... ... ..
T Consensus 4 ~v~~ii~--~~-~~~vLl~~r~~~----~~w~lPgG~v~~~-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~--~~~-~~ 72 (129)
T cd04676 4 GVTAVVR--DD-EGRVLLIRRSDN----GLWALPGGAVEPG-ESPADTAVREVREETGLDVEVTGLVGIYTG--PVH-VV 72 (129)
T ss_pred eEEEEEE--CC-CCeEEEEEecCC----CcEECCeeccCCC-CCHHHHHHHHHHHHhCceeEeeEEEEEeec--ccc-ee
Confidence 4445543 33 236888776542 4699999999998 999999999999999998854332111100 000 00
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
.++..........+|++... ... . ....+|..+++|++++++.++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~-~~~--------~--~~~~~e~~~~~w~~~~el~~~~~ 119 (129)
T cd04676 73 TYPNGDVRQYLDITFRCRVV-GGE--------L--RVGDDESLDVAWFDPDGLPPLLM 119 (129)
T ss_pred ecCCCCcEEEEEEEEEEEee-CCe--------e--cCCCCceeEEEEEChhhCccccC
Confidence 11211112333344544332 110 0 12566788999999999987654
No 60
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.5e-13 Score=114.24 Aligned_cols=52 Identities=29% Similarity=0.392 Sum_probs=42.6
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcc
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i 206 (307)
+|.++++ +++ +|||+++++. ..|+||||.+|+| |++.+||+||++||||+++
T Consensus 2 ~~~~ii~--~~~--~vLLv~~~~~----~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIIL--QGD--KILLLYTKRY----GDYKFPGGGVEKG-EDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEE--ECC--EEEEEEEcCC----CcEECccccCCCC-CCHHHHHHHHHHHHHCCcc
Confidence 4555544 344 5999988763 2599999999998 9999999999999999986
No 61
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.49 E-value=1.6e-13 Score=118.43 Aligned_cols=119 Identities=20% Similarity=0.164 Sum_probs=73.6
Q ss_pred EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~ 223 (307)
+|+|+++ +++ ++|||.+|.... ..+..|++| ||++|+| |++++||+||++||||+++....+. +..+..
T Consensus 32 ~v~v~i~-~~~--~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~G-Et~~eaa~REl~EEtGl~~~~~~~~-~~~~~~---- 102 (165)
T cd02885 32 AFSVFLF-NSK--GRLLLQRRALSKYTFPGLWTNTCCSHPLPG-EGVKDAAQRRLREELGITGDLLELV-LPRFRY---- 102 (165)
T ss_pred EEEEEEE-cCC--CcEEEEeccCCCccCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCccchhhc-cceEEE----
Confidence 4555544 233 368887654322 123478886 8999998 9999999999999999998643332 122100
Q ss_pred ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805 224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA 285 (307)
Q Consensus 224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ 285 (307)
...+.......+..++|.+.... . . ..+.+|..+++|++++++.+++.++
T Consensus 103 ~~~~~~~~~~~~i~~~f~~~~~~--~--------~--~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 103 RAPDDGGLVEHEIDHVFFARADV--T--------L--IPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred EEEcCCCceeeEEEEEEEEEeCC--C--------C--CCCccceeEEEEECHHHHHHHHHhC
Confidence 00111112233445666655321 1 1 2356788899999999999988754
No 62
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=5.6e-13 Score=113.01 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=74.4
Q ss_pred EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccc--eeeccccccCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED--MIDLTAFLYPST 222 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~--L~~L~~l~~~~~ 222 (307)
+|+|+++ +.+ .++||++|.+.+ ..+..|++|||++++| |++.+||+||++||||+.+.... +..++..
T Consensus 3 ~v~viv~-~~~--~~vLl~rr~~~~~~~~g~w~~PgG~v~~~-E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~----- 73 (143)
T cd04694 3 GVAVLLQ-SSD--QKLLLTRRASSLRIFPNVWVPPGGHVELG-ENLLEAGLRELNEETGLTLDPIDKSWQVLGLW----- 73 (143)
T ss_pred EEEEEEE-cCC--CEEEEEEECCCCCCCCCeEECcccccCCC-CCHHHHHHHHHHHHHCCCccccccceeEEeee-----
Confidence 3445544 223 369998887653 2455899999999998 99999999999999999885321 2222210
Q ss_pred CceeecC---CCcc-ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 223 GCKFFPS---AGGC-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 223 ~~~~~~s---pg~~-~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
...|+. .+.. .+.+.+|++......... ....-..+.+|..+++|++++++.+++.
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~ 133 (143)
T cd04694 74 -ESVYPPLLSRGLPKRHHIVVYILVKSSETHQQ----LQARLQPDPNEVSAAAWLDKSLAKAVVS 133 (143)
T ss_pred -ccccccccCCCcccceeEEEEEEEEecccccc----ccccccCChhhccceEeeCHHHHHHHHH
Confidence 001221 1221 334444444322211000 0000123567899999999999998875
No 63
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.46 E-value=1.5e-12 Score=107.76 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=65.1
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
+|||+++.+.......|+||||.+|+| |++.+||.||++||||+++....+ ++. ..+...+ ....+++
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~g-E~~~~a~~RE~~EE~Gl~~~~~~~--~~~--------~~~~~~~-~~~~~~~ 83 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPG-ESQPQALIRELREELGIEATVGEY--VAS--------HQREVSG-RRIHLHA 83 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCC-CCHHHHHHHHHHHHHCCcccccee--EEE--------EEEecCC-cEEEEEE
Confidence 588887655444456899999999998 999999999999999999864332 221 1122111 2233455
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
|.+... . + .....|...+.|++++++.++..
T Consensus 84 ~~~~~~-~--------~----~~~~~e~~~~~W~~~~el~~~~~ 114 (135)
T PRK10546 84 WHVPDF-H--------G----ELQAHEHQALVWCTPEEALRYPL 114 (135)
T ss_pred EEEEEe-c--------C----cccccccceeEEcCHHHcccCCC
Confidence 544331 1 1 11234566889999999988754
No 64
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.45 E-value=7.9e-13 Score=112.40 Aligned_cols=109 Identities=26% Similarity=0.357 Sum_probs=70.5
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|++++. .++ +|||+++...|.. ..|.+|||++|.| |++++||+||++||||+++.. +..++
T Consensus 12 ~v~~~i~--~~~--~iLLvrR~~~p~~-g~WalPGG~ve~G-Et~eeaa~REl~EETgL~~~~--~~~~~---------- 73 (145)
T COG1051 12 AVGALIV--RNG--RILLVRRANEPGA-GYWALPGGFVEIG-ETLEEAARRELKEETGLRVRV--LELLA---------- 73 (145)
T ss_pred eeeEEEE--eCC--EEEEEEecCCCCC-CcEeCCCccCCCC-CCHHHHHHHHHHHHhCCcccc--eeEEE----------
Confidence 3444443 344 6999988776654 4699999999998 999999999999999999753 33332
Q ss_pred eecCCCcc---ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 226 FFPSAGGC---DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 226 ~~~spg~~---~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
+|..++-. .....+|++.... +... ..+.++.-.+.|++++++..+.
T Consensus 74 v~~~~~rd~r~~~v~~~~~~~~~~---------g~~~-~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 74 VFDDPGRDPRGHHVSFLFFAAEPE---------GELL-AGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred EecCCCCCCceeEEEEEEEEEecC---------CCcc-cCChhhHhhcceecHhHccccc
Confidence 45555432 2222333333221 1110 1123366688999999998754
No 65
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.45 E-value=1.8e-12 Score=104.21 Aligned_cols=100 Identities=20% Similarity=0.146 Sum_probs=68.3
Q ss_pred eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS 238 (307)
Q Consensus 159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~ 238 (307)
+++||+++.+.+.....|++|||.++.+ |++.++|.||++||||+++.. ...++.+ .+..+ .....++
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~-e~~~~~a~Re~~EE~g~~~~~--~~~~~~~--------~~~~~-~~~~~~~ 80 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPG-ETPEQALVRELREELGIEVEV--GELLATV--------EHDYP-DKRVTLH 80 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCC-CCHHHHHHHHHHHhhCcEEec--cceEEEE--------EeeCC-CCeEEEE
Confidence 3688888776665566899999999997 999999999999999998753 3333321 22222 2234455
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+|.+.... + .....|...+.|++++++.++..
T Consensus 81 ~~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~ 112 (124)
T cd03425 81 VFLVELWS---------G----EPQLLEHQELRWVPPEELDDLDF 112 (124)
T ss_pred EEEEeeeC---------C----CcccccCceEEEeeHHHcccCCC
Confidence 56554321 0 11245667889999999988654
No 66
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=2.5e-12 Score=105.05 Aligned_cols=99 Identities=19% Similarity=0.058 Sum_probs=64.2
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
++||.++.+.+..+..|+||||.+|+| |++.+||+||++||||+++..... +.. +....+.....+++
T Consensus 17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~g-e~~~~~~~RE~~EE~g~~~~~~~~--~~~---------~~h~~~~~~~~~~~ 84 (128)
T TIGR00586 17 EIIITRRADGHMFAKLLEFPGGKEEGG-ETPEQAVVRELEEEIGIPQHFSEF--EKL---------EYEFYPRHITLWFW 84 (128)
T ss_pred EEEEEEEeCCCCCCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCcceeeeE--EEE---------EEEECCCcEEEEEE
Confidence 588877766655566999999999998 999999999999999998753322 221 11111122233444
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
|.+... . + .....+..++.|++++++.+...
T Consensus 85 ~~~~~~--~-------~----~~~~~~~~~~~W~~~~~l~~~~~ 115 (128)
T TIGR00586 85 LLERWE--G-------G----PPGKEGQPEEWWVLVGLLADDFF 115 (128)
T ss_pred EEEEEc--C-------C----CcCcccccccEEeCHHHCCccCC
Confidence 444321 1 1 11223455789999999987654
No 67
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.43 E-value=1.1e-12 Score=115.53 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=73.9
Q ss_pred EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeec-cccccCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL-TAFLYPST 222 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L-~~l~~~~~ 222 (307)
+|+|+++ +++ ++|||+++.... .....|.+| ||++|+| |++++||+||++||||+++. .+..+ +.+..
T Consensus 36 av~v~i~-~~~--g~vLL~rR~~~~~~~PG~w~~~~gG~ve~G-Et~~~aa~REl~EEtGl~~~--~~~~~~~~~~~--- 106 (184)
T PRK03759 36 AFSCYLF-DAD--GRLLVTRRALSKKTWPGVWTNSCCGHPQPG-ESLEDAVIRRCREELGVEIT--DLELVLPDFRY--- 106 (184)
T ss_pred EEEEEEE-cCC--CeEEEEEccCCCCCCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCcc--ccccccceEEE---
Confidence 5555544 223 368888753211 112357776 8999998 99999999999999999884 22221 11000
Q ss_pred CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805 223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 286 (307)
Q Consensus 223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k 286 (307)
...+++....++.+++|++.... .. ..+++|..++.|++++++.+++.++.
T Consensus 107 -~~~~~~~~~~~~~~~vf~~~~~~----------~~--~~~~~Ev~~~~W~~~~el~~~i~~~~ 157 (184)
T PRK03759 107 -RATDPNGIVENEVCPVFAARVTS----------AL--QPNPDEVMDYQWVDPADLLRAVDATP 157 (184)
T ss_pred -EEecCCCceeeEEEEEEEEEECC----------CC--CCChhHeeeEEEECHHHHHHHHHhCC
Confidence 00112222234566778775431 11 23667899999999999999987553
No 68
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.41 E-value=4.6e-12 Score=103.13 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=63.3
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
++||.++...+.....|+||||.+|+| |++.+||.||++||||+++.. ...++.+ .+..+. ....+++
T Consensus 17 ~vll~rR~~~~~~~g~w~~PgG~~~~g-E~~~~a~~Re~~EE~gl~~~~--~~~~~~~--------~~~~~~-~~~~~~~ 84 (129)
T PRK10776 17 EIFITRRAADAHMAGKWEFPGGKIEAG-ETPEQALIRELQEEVGITVQH--ATLFEKL--------EYEFPD-RHITLWF 84 (129)
T ss_pred EEEEEEecCCCCCCCeEECCceecCCC-CCHHHHHHHHHHHHHCCceec--ceEEEEE--------EeeCCC-cEEEEEE
Confidence 688877655544456899999999998 999999999999999998743 2223221 122221 1223444
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
|.+... . +. ....|..++.|++++++.....
T Consensus 85 ~~~~~~-~--------~~----~~~~e~~~~~W~~~~~l~~~~~ 115 (129)
T PRK10776 85 WLVESW-E--------GE----PWGKEGQPGRWVSQVALNADEF 115 (129)
T ss_pred EEEEEE-C--------Cc----cCCccCCccEEecHHHCccCCC
Confidence 544321 1 11 1234566789999999987543
No 69
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.41 E-value=4.1e-12 Score=122.12 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=70.7
Q ss_pred cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc-
Q 021805 155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC- 233 (307)
Q Consensus 155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~- 233 (307)
+++ +|||+++...| +...|.+|||++|+| |++.+||+||++||||+++....+..... ....|..|+..
T Consensus 212 ~~g--~VLLvrR~~~p-~~g~W~lPGG~ve~g-Et~~~Aa~REl~EETGl~v~~~~l~~~~~------~~~~f~~p~r~~ 281 (340)
T PRK05379 212 QSG--HVLLVRRRAEP-GKGLWALPGGFLEQD-ETLLDACLRELREETGLKLPEPVLRGSIR------DQQVFDHPGRSL 281 (340)
T ss_pred ECC--EEEEEEecCCC-CCCeEECCcccCCCC-CCHHHHHHHHHHHHHCCcccccccceeee------eeEEEcCCCCCC
Confidence 445 69998876544 456899999999998 99999999999999999986433322110 01244445432
Q ss_pred --ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 234 --DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 234 --~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
....++|++..... + .......+|..++.|++++++.++
T Consensus 282 ~~~~i~~~f~~~~~~~-~--------~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 282 RGRTITHAFLFEFPAG-E--------LPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCcEEEEEEEEEecCC-c--------cCccCCCCceeeEEEEEHHHhhhh
Confidence 23445566543211 0 011224567889999999999864
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.39 E-value=3e-12 Score=106.65 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=65.8
Q ss_pred eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc------
Q 021805 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG------ 232 (307)
Q Consensus 159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~------ 232 (307)
..+||+++.. + +...|+||+|++|+| |++.+||.||++||||+.+... +...... ....|..+..
T Consensus 13 ~~~Llvk~~~-~-~~g~W~fPgG~ve~g-Et~~eaa~REl~EEtGl~v~~~-~i~~~~~-----~~~~~~~~~~~~~~~~ 83 (132)
T cd04661 13 TLVLLVQQKV-G-SQNHWILPQGKREEG-ETLRQTAERTLKELCGNNLKAK-FYGNAPV-----GFYKYKYPKAVRNEGI 83 (132)
T ss_pred cEEEEEEeec-C-CCCeeECCcccccCC-CCHHHHHHHHHHHhhCCCceEE-EEEecCc-----EEEEEecCcccccccC
Confidence 3577777643 2 235799999999998 9999999999999999987531 1111000 0012222211
Q ss_pred cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 233 CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 233 ~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
....+++|.+... . |.. ....|..++.|++++|+.+++.
T Consensus 84 ~~~~~~~f~~~~~-~--------g~~---~~~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 84 VGAKVFFFKARYM-S--------GQF---ELSQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred cccEEEEEEEEEe-c--------Ccc---ccCCCcceeEecCHHHHHhhcC
Confidence 1234566666542 1 111 1236788999999999998764
No 71
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.39 E-value=2.3e-12 Score=110.72 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=73.4
Q ss_pred EEEEEEEEecCCceEEEEEEeeec-CCCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRV-PTGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~-p~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~ 223 (307)
+|+++++ ++++ +|||.++... ......|++| ||+++.| | .+||+||++||||+++...++..++.+.
T Consensus 29 ~v~v~v~-~~~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~G-E--~eaa~REl~EE~Gl~~~~~~l~~~~~~~----- 97 (158)
T TIGR02150 29 AFSVFLF-NEEG--QLLLQRRALSKITWPGVWTNSCCSHPLPG-E--LEAAIRRLREELGIPADDVPLTVLPRFS----- 97 (158)
T ss_pred EEEEEEE-cCCC--eEEEEeccCCCcCCCCCccccccCCCCcc-c--HHHHHHHHHHHHCCCccccceEEcceEE-----
Confidence 5555544 3333 5888654321 0123589997 7999998 8 4999999999999998654443443210
Q ss_pred ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805 224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 286 (307)
Q Consensus 224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k 286 (307)
..+..+.+..+..++|.+.... . ...+++|..++.|++++|+.++++..+
T Consensus 98 -~~~~~~~g~~~~~~~f~~~~~~--~----------~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 98 -YRARDAWGEHELCPVFFARAPV--P----------LNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred -EEEecCCCcEEEEEEEEEecCC--c----------ccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 0111221234555667665421 1 123567999999999999999988544
No 72
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.39 E-value=4.6e-12 Score=100.77 Aligned_cols=99 Identities=26% Similarity=0.311 Sum_probs=67.1
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCC-CccceEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSA-GGCDEEIS 238 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~sp-g~~~e~i~ 238 (307)
+++|+++.+. ....|++|||++|.+ |++.++|+||++||+|+.+.......+. .+..+ ......+.
T Consensus 13 ~ill~kr~~~--~~~~~~~p~G~~~~~-e~~~~~a~RE~~EE~Gl~~~~~~~~~~~----------~~~~~~~~~~~~~~ 79 (123)
T cd02883 13 RVLLVRRADS--PGGLWELPGGGVEPG-ETLEEAAIREVREETGLDVDVLRLLGVY----------EVESPDEGEHAVVF 79 (123)
T ss_pred CEEEEEEcCC--CCCeEeCCcccccCC-CCHHHHHHHHHHHhhCccceeeeEEEEE----------EeeccCCCceEEEE
Confidence 5888877665 345899999999998 9999999999999999987422222222 12111 34456666
Q ss_pred EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
+|.+....... . ...+.|....+|++++++.+.
T Consensus 80 ~~~~~~~~~~~---------~-~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 80 VFLARLVGGEP---------T-LLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred EEEEEeCCCCc---------C-CCCCCccceEEEEcHHHCccc
Confidence 67665432110 0 124567778899999999864
No 73
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.39 E-value=3.9e-12 Score=104.56 Aligned_cols=101 Identities=18% Similarity=0.082 Sum_probs=70.5
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (307)
+|.|+++ .++ ++||+++.+ ..|++|||++|+| |++.+||+||+.||||+.+ ..+..++.
T Consensus 2 ~v~vi~~--~~~--~vLl~~~~~-----~~w~lPgG~ve~g-E~~~~aa~REl~EE~G~~~--~~~~~l~~--------- 60 (118)
T cd04665 2 SVLVICF--YDD--GLLLVRHKD-----RGWEFPGGHVEPG-ETIEEAARREVWEETGAEL--GSLTLVGY--------- 60 (118)
T ss_pred EEEEEEE--ECC--EEEEEEeCC-----CEEECCccccCCC-CCHHHHHHHHHHHHHCCcc--CceEEEEE---------
Confidence 4556654 333 599988742 3699999999998 9999999999999999998 46667763
Q ss_pred eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhH
Q 021805 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYREL 278 (307)
Q Consensus 226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel 278 (307)
+...++.......+|++....... .....|.....|++....
T Consensus 61 ~~~~~~~~~~~~~~y~a~~~~~~~-----------~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 61 YQVDLFESGFETLVYPAVSAQLEE-----------KASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEecCCCCcEEEEEEEEEEEeccc-----------ccccccccCcEEeccCCc
Confidence 333333345566677776542211 124578888999987654
No 74
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=3e-12 Score=107.17 Aligned_cols=119 Identities=23% Similarity=0.152 Sum_probs=69.5
Q ss_pred EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcc-cccceeeccccccCCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL-KLEDMIDLTAFLYPSTG 223 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i-~~~~L~~L~~l~~~~~~ 223 (307)
++.++++. .++ +|||+++.+.. .+...|++|||.++.| |++.+||.||++||||+++ ....+.....
T Consensus 2 ~~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~g-E~~~~a~~Re~~EE~G~~~~~~~~~~~~~~------- 70 (133)
T cd04685 2 AARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPG-ESPEQAARRELREETGITVADLGPPVWRRD------- 70 (133)
T ss_pred eEEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCC-CCHHHHHHHHHHHHHCCccccccceEEEEE-------
Confidence 45566552 333 68888765431 1345899999999998 9999999999999999998 3222222111
Q ss_pred ceeecCCCc-cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 224 CKFFPSAGG-CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 224 ~~~~~spg~-~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
..|...+. .....++|+++.... .+. ..... ..+.++..+++|++++++.+.
T Consensus 71 -~~f~~~~~~~~~~~~~f~~~~~~~--~~~--~~~~~-~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 71 -AAFTFLGVDGRQEERFFLARTPRT--EPS--PAGWT-ALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred -EEEEecCccceeeEEEEEEEcCCc--ccc--CCCCC-hhhhhhcccccCCCHHHHhhC
Confidence 12222221 223445666654311 100 00000 011233457999999999764
No 75
>PLN02709 nudix hydrolase
Probab=99.34 E-value=1e-11 Score=112.28 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=77.0
Q ss_pred eCCEEEEEEEEec---CCceEEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccc
Q 021805 143 RGPAVAVLILLDS---EGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFL 218 (307)
Q Consensus 143 r~~aVaVl~il~~---~g~~~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~ 218 (307)
|..||.|+++..+ +++.+|||+++.+.. ...+.|.||||++|++|+++.+||+||++||+|+... ...-++.+.
T Consensus 32 r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~--~v~vlg~L~ 109 (222)
T PLN02709 32 KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS--LVTIISVLE 109 (222)
T ss_pred CccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch--heEEeeecC
Confidence 3455555544321 244589999887653 2455899999999997578999999999999999874 344444431
Q ss_pred cCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 219 YPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 219 ~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
.++.. ....++-|++....... ..-..+++|..++.|||++++.+.
T Consensus 110 ------~~~t~---sg~~V~P~V~~~~~~~~--------~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 110 ------PFVNK---KGMSVAPVIGFLHDKKA--------FKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred ------CeECC---CCCEEEEEEEEecCCCC--------ccccCChhhhheeEEecHHHHhCC
Confidence 23322 23345666654321100 000247789999999999998643
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=2e-11 Score=100.45 Aligned_cols=52 Identities=27% Similarity=0.437 Sum_probs=41.6
Q ss_pred EEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 021805 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (307)
Q Consensus 161 VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L 214 (307)
+||++|.+.+ +...|+||||++|+| |++.+||.||++||||+++....+..+
T Consensus 17 ~lL~~r~~~~-~~~~w~lPgG~ve~~-E~~~~aa~REl~EE~g~~~~~~~l~~~ 68 (118)
T cd04674 17 LLVIRRGIEP-GRGKLALPGGFIELG-ETWQDAVARELLEETGVAVDPADIRLF 68 (118)
T ss_pred EEEEEeecCC-CCCeEECCceecCCC-CCHHHHHHHHHHHHHCCcccccEEEEE
Confidence 6677665544 456899999999998 999999999999999999864444443
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.31 E-value=3.3e-11 Score=100.17 Aligned_cols=90 Identities=18% Similarity=0.067 Sum_probs=57.7
Q ss_pred EEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc--cceEEEEEEEEEechhHHHH
Q 021805 175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG--CDEEISLFLYRGRVDKEIIM 252 (307)
Q Consensus 175 ~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~--~~e~i~lf~~~~~~~~~~i~ 252 (307)
.|++|||.+|+| |++.+||+||++||||+++..... .+ ....++. .+...+++++....+.. .
T Consensus 25 ~~~lPgG~ve~~-E~~~~aa~Rel~EEtGl~~~~~~~-~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 89 (126)
T cd04663 25 GFQIVKGTVEPG-ETPEAAALRELQEESGLPSFLSDY-IL-----------HVWERRFYQKRHFWHLTLCEVDQDLP--D 89 (126)
T ss_pred cEECCCccCCCC-CCHHHHHHHHHHHHHCCeeeeeee-cc-----------eeeeCCEeeccEEEEEEEEEecCCCc--c
Confidence 389999999998 999999999999999999721110 11 1112232 45556666665432111 1
Q ss_pred HhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 253 QLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 253 ~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
.+.+... .++++.+++.|++++++...
T Consensus 90 ~~~~~~~--~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 90 SWVHFVQ--DDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred cccCccc--CCCCceEEEEEEcccccccc
Confidence 2223222 24777888999999998554
No 78
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.20 E-value=3e-12 Score=119.17 Aligned_cols=120 Identities=25% Similarity=0.333 Sum_probs=82.1
Q ss_pred EEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeecccc
Q 021805 138 GIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAF 217 (307)
Q Consensus 138 ~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l 217 (307)
+.+|.|.+-|+|.++++.++ ++.||.||.|++.| +|..+||.+|+| |++++||+||+.||||++++ .+.....
T Consensus 180 n~~yPr~dPvVIm~li~~d~-~~~LL~R~~r~~~g--l~t~lAGFlEpG-ES~eeav~REtwEEtGi~V~--~I~~~as- 252 (345)
T KOG3084|consen 180 NVIYPRTDPVVIMLLIDHDG-KHALLGRQKRYPPG--LWTCLAGFLEPG-ESIEEAVRRETWEETGIEVE--VISYVAS- 252 (345)
T ss_pred CeeccCCCCeEEEEEEcCCC-CEeeeecccCCCCc--hhhhhhccCCcc-ccHHHHHHHHHHHHhCceee--eEeeeec-
Confidence 56778888888888877666 48999999998765 799999999998 99999999999999999994 4444332
Q ss_pred ccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCC-ceEEEEEEchhhHhhccC
Q 021805 218 LYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHG-ELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 218 ~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~-E~i~v~wvpleel~~~i~ 283 (307)
-|.|-.....+..+++ +....++. ..+.+ |..+..|++.+|+.+.+.
T Consensus 253 ---------QPWP~~p~SLMIgc~a--------la~~~~~I--~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 253 ---------QPWPLMPQSLMIGCLA--------LAKLNGKI--SVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred ---------CCCCCCchHHHHHHHH--------HHhhCCcc--ccCcchhhhhcccccHHHHHHHHH
Confidence 2333111111111111 11111222 23555 888899999999876553
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.19 E-value=2e-11 Score=112.98 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=83.4
Q ss_pred EEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccc
Q 021805 139 IVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFL 218 (307)
Q Consensus 139 ~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~ 218 (307)
..|.|-+-++|+++.+ .+ ++||.++.|.. ..++.+-||.||+| ||+++|++||+.||+|++++ ++.++++
T Consensus 138 ~~fPR~dP~vIv~v~~-~~--~ilLa~~~~h~--~g~yS~LAGFVE~G-ETlE~AV~REv~EE~Gi~V~--~vrY~~S-- 207 (279)
T COG2816 138 EHFPRIDPCVIVAVIR-GD--EILLARHPRHF--PGMYSLLAGFVEPG-ETLEQAVAREVFEEVGIKVK--NVRYVGS-- 207 (279)
T ss_pred ccCCCCCCeEEEEEec-CC--ceeecCCCCCC--CcceeeeeecccCC-ccHHHHHHHHHHHhhCeEEe--eeeEEec--
Confidence 3567777666666642 22 38898888887 35788999999998 99999999999999999994 7887764
Q ss_pred cCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 219 YPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 219 ~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
..+|-|. -.|.-|.++.... +| .++++|..++.|++.+|+..++.
T Consensus 208 ------QPWPfP~---SLMigf~aey~sg--eI---------~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 208 ------QPWPFPH---SLMLGFMAEYDSG--EI---------TPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred ------cCCCCch---hhhhhheeeeccc--cc---------cCCcchhhhccccCHhHHhhhcC
Confidence 2455443 2344466655422 12 25778999999999999655553
No 80
>PRK08999 hypothetical protein; Provisional
Probab=99.18 E-value=2.1e-10 Score=108.44 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=65.8
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l 239 (307)
++||+++.+.......|+||||.+|+| |++.+||.||++||||+.+.. ...+... .+..++ .+..+++
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~--~~~l~~~--------~h~~~~-~~~~i~~ 85 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPG-ETVEQALARELQEELGIEVTA--ARPLITV--------RHDYPD-KRVRLDV 85 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCC-CCHHHHHHHHHHHHhCCceec--ceeEEEE--------EEEcCC-CeEEEEE
Confidence 688887765544556899999999998 999999999999999998753 2223221 122222 2345666
Q ss_pred EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282 (307)
Q Consensus 240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i 282 (307)
|.+.... + .....|..+++|++++++.++.
T Consensus 86 y~~~~~~---------~----~~~~~e~~~~~Wv~~~el~~~~ 115 (312)
T PRK08999 86 RRVTAWQ---------G----EPHGREGQPLAWVAPDELAVYP 115 (312)
T ss_pred EEEEEec---------C----cccCccCCccEEecHHHcccCC
Confidence 6554321 1 1123456678999999998754
No 81
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=99.16 E-value=1.9e-10 Score=106.32 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=108.6
Q ss_pred CCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCC---------------------------CeEEEccceecC
Q 021805 132 TGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG---------------------------RVILELPAGMLD 184 (307)
Q Consensus 132 ~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g---------------------------~~~wElPaG~vD 184 (307)
||-+........+++|+++++ +..+++++|++|+|++.- +.++||++|.||
T Consensus 217 NGi~knWDl~k~hdSvt~iL~--n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd 294 (405)
T KOG4432|consen 217 NGITKNWDLAKCHDSVTCILV--NMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVD 294 (405)
T ss_pred cCcccccchhhCCCceEEEEE--eccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCC
Confidence 666655556667899999977 455668999999998861 347899999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCC
Q 021805 185 DDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDH 264 (307)
Q Consensus 185 ~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~ 264 (307)
.. -+-.+.|+||.-||+|+++.++++..+.. +.+-.|.+.....+|+++..... ..++++|..++
T Consensus 295 ~p-~s~~e~a~~e~veecGYdlp~~~~k~va~---------y~sGVG~SG~~QTmfy~eVTdA~-----rsgpGgg~~ee 359 (405)
T KOG4432|consen 295 DP-FSDPEKAARESVEECGYDLPEDSFKLVAK---------YISGVGQSGDTQTMFYVEVTDAR-----RSGPGGGEKEE 359 (405)
T ss_pred CC-cccHHHHHHHHHHHhCCCCCHHHHhhhhe---------eecccCCcCCeeEEEEEEeehhh-----ccCCCCCcccc
Confidence 86 77889999999999999999888777753 66666777777788887654321 24677788899
Q ss_pred CceEEEEEEchhhHhhccCCh
Q 021805 265 GELIKVRVVPYRELWRTTPDA 285 (307)
Q Consensus 265 ~E~i~v~wvpleel~~~i~D~ 285 (307)
+|.|++.-++++++..+..++
T Consensus 360 ~E~IEvv~lsle~a~~~~~q~ 380 (405)
T KOG4432|consen 360 DEDIEVVRLSLEDAPSLYRQH 380 (405)
T ss_pred cceeeEEEechhhhhHHHhcc
Confidence 999999999999999998744
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.13 E-value=7.4e-10 Score=97.91 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=69.0
Q ss_pred CceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccccccee--eccccccC--CCCceee----c
Q 021805 157 GETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMI--DLTAFLYP--STGCKFF----P 228 (307)
Q Consensus 157 g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~--~L~~l~~~--~~~~~~~----~ 228 (307)
+..++|++++.. ...|.||||++|++ |++.+||.||++||||+.+....+. .++.+..- .....+| .
T Consensus 47 ~~l~vLl~~r~~----~g~walPGG~v~~~-E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~ 121 (186)
T cd03670 47 PILQFVAIKRPD----SGEWAIPGGMVDPG-EKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVD 121 (186)
T ss_pred CeeEEEEEEeCC----CCcCcCCeeeccCC-CCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEecccc
Confidence 345677777632 24699999999998 9999999999999997754211110 00000000 0001133 3
Q ss_pred CCCccc----eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805 229 SAGGCD----EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI 291 (307)
Q Consensus 229 spg~~~----e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al 291 (307)
.|..++ +.+.+++. .. ..+.. +. ......++..+++|++++++..+.+|.+.|..-
T Consensus 122 dpr~td~~w~~Tva~~f~-~~-~~~~~----~~-~~~~a~dda~~a~W~~v~~l~~L~~dH~~Il~~ 181 (186)
T cd03670 122 DPRNTDNAWMETVAVNFH-DE-DGNDV----EN-LPLEAGDDAGSVRWQDIDSKLPLYANHSQFLKK 181 (186)
T ss_pred CCCCCCcceEEEEEEEEE-ec-Ccccc----cc-cccCCCCchheeEEEEcccccccccCHHHHHHH
Confidence 343322 23332222 11 00000 00 001234577889999999999988899877644
No 83
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.07 E-value=2e-09 Score=87.19 Aligned_cols=44 Identities=32% Similarity=0.540 Sum_probs=35.3
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHH-HHHHHHHHHhCCccc
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVG-TAVREVEEETGIQLK 207 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~-AA~REl~EETGl~i~ 207 (307)
++++.++.. +. ..|++|||++|.+ |++.+ ||+||++||||+++.
T Consensus 25 ~vl~~~~~~-~~--~~~~~PgG~ve~~-e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 25 EVLLAQRRD-DG--GLWELPGGKVEPG-EELPEEAAARELEEETGLRVK 69 (161)
T ss_pred EEeEEEccc-cC--CceecCCcccCCC-CchHHHHHHHHHHHHhCCeee
Confidence 566654433 22 4799999999998 87788 999999999999986
No 84
>PLN02791 Nudix hydrolase homolog
Probab=98.98 E-value=1.5e-09 Score=113.27 Aligned_cols=121 Identities=22% Similarity=0.185 Sum_probs=77.2
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCC---CCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS 221 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~ 221 (307)
+|.|.++ +..++++||.+| ... .++.|++ |||+++.| |+..+||+||++||+|+.+....+..++.+..
T Consensus 34 AvhVwIf--n~~~gelLLQkR--S~~K~~~PG~WDiS~gGHv~aG-Es~~eAA~REL~EELGI~l~~~~l~~l~~~~~-- 106 (770)
T PLN02791 34 AVHVWIY--SESTQELLLQRR--ADCKDSWPGQWDISSAGHISAG-DTSLLSAQRELEEELGIILPKDAFELLFVFLQ-- 106 (770)
T ss_pred EEEEEEE--ECCCCeEEEEEe--cCCCCCCCCcccCcCCCCCCCC-CCHHHHHHHHHHHHhCCCCChhheeeeeeEEE--
Confidence 5555554 322236777444 332 2448888 79999998 99999999999999999976555555543100
Q ss_pred CCceeecCCC--ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 222 TGCKFFPSAG--GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 222 ~~~~~~~spg--~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
......| ..++..++|++....+.+ +. .. ..+++|+.+++|++++|+.+++.
T Consensus 107 ---~~~~~~g~~~e~E~~~VYlv~~~~~~p-~~----~~--~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 107 ---ECVINDGKFINNEYNDVYLVTTLDPIP-LE----AF--TLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred ---EeeccCCCcceeeEEEEEEEEECCCCC-cc----cC--CCChhhhheeEEEcHHHHHHHHh
Confidence 0111222 245777888875321110 00 01 24678999999999999998875
No 85
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.97 E-value=3.2e-09 Score=95.59 Aligned_cols=118 Identities=25% Similarity=0.234 Sum_probs=74.8
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 224 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~ 224 (307)
+|.|.++...+++..|||+++.|.-- .++...||||+.|+.|++...||.||.+||.|+... .+..++.+ .
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~--~~~~~g~l------~ 116 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPE--LVDVLGAL------P 116 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHH--Hhhhhhhc------c
Confidence 44444443234667899988876532 344788999999998788999999999999999873 44444432 2
Q ss_pred eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805 225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 281 (307)
Q Consensus 225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~ 281 (307)
.++...+..-..+..|+....+- .......+|...+.|||++++..-
T Consensus 117 ~~~~r~~~~v~p~v~~l~~~~~l----------~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 117 PFVLRSGWSVFPVVGFLSDKKIL----------PSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred ceeeccCcccceeEEEEeccccc----------ccccCCchheeeeeeeeHHHHhhh
Confidence 23333333222222233221110 012457899999999999998643
No 86
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.84 E-value=1.8e-08 Score=92.91 Aligned_cols=123 Identities=21% Similarity=0.181 Sum_probs=66.5
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCC---CeEEEcc-ceecCCC-------------CCC---HHHHHHHHHHHHhCCc
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTG---RVILELP-AGMLDDD-------------KGD---FVGTAVREVEEETGIQ 205 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g---~~~wElP-aG~vD~g-------------~Et---~~~AA~REl~EETGl~ 205 (307)
++.|+++ +++| ++|| |.|.+.+ +..|+.. +|++-.| +|+ ..+||+||++|||||.
T Consensus 58 a~~v~i~-n~~g--~lLL--QkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~ 132 (247)
T PLN02552 58 AFSVFLF-NSKY--ELLL--QQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP 132 (247)
T ss_pred EEEEEEE-cCCC--eEEE--EEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence 5666655 2334 5777 4454443 3478555 3443332 011 6789999999999999
Q ss_pred ccc---cceeeccccccCC-CCceeecCCCcc-ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhh
Q 021805 206 LKL---EDMIDLTAFLYPS-TGCKFFPSAGGC-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR 280 (307)
Q Consensus 206 i~~---~~L~~L~~l~~~~-~~~~~~~spg~~-~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~ 280 (307)
+.. .++..++.+.... .....|++.+.. ++..++|+. ...... .. .++++|..+++|++++|+.+
T Consensus 133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~-------~l--~lq~eEV~~~~wvs~~el~~ 202 (247)
T PLN02552 133 AEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDV-------KV--NPNPDEVADVKYVNREELKE 202 (247)
T ss_pred ccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCC-------cc--cCCHHHhheEEEEeHHHHHH
Confidence 642 2344454321100 000112222222 344455443 222111 11 24678999999999999998
Q ss_pred ccC
Q 021805 281 TTP 283 (307)
Q Consensus 281 ~i~ 283 (307)
++.
T Consensus 203 ~~~ 205 (247)
T PLN02552 203 MMR 205 (247)
T ss_pred HHh
Confidence 864
No 87
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.76 E-value=3.4e-08 Score=82.94 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=72.1
Q ss_pred EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 226 (307)
Q Consensus 147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~ 226 (307)
+++|++..+....+|||+.-.+.+. .|-+|+|.+|++ |+..+||.||..||.|+...... .++.+. -
T Consensus 12 agCi~~r~~~~~ieVLlvsSs~~~~---~wi~PKGGwE~d-E~~~eAA~REt~EEAGv~G~l~~--~~~g~~-------~ 78 (145)
T KOG2839|consen 12 AGCICYRSDKEKIEVLLVSSSKKPH---RWIVPKGGWEPD-ESVEEAALRETWEEAGVKGKLGR--LLGGFE-------D 78 (145)
T ss_pred EEeeeeeecCcceEEEEEecCCCCC---CccCCCCCCCCC-CCHHHHHHHHHHHHhCceeeeec--cccchh-------h
Confidence 3445544333335788887655432 477999999997 99999999999999999874322 132211 1
Q ss_pred ecCCCccce-EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805 227 FPSAGGCDE-EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI 291 (307)
Q Consensus 227 ~~spg~~~e-~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al 291 (307)
+.+....+. .-.+|... ..+++..+ ...+.|.-+.+|+.++|+...+.+....+|+
T Consensus 79 ~~~~~~~~~~k~~~~~l~---v~e~le~w------p~~~~~~r~r~W~~ledA~~~~~~~~m~~al 135 (145)
T KOG2839|consen 79 FLSKKHRTKPKGVMYVLA---VTEELEDW------PESEHEFREREWLKLEDAIELCQHKWMKAAL 135 (145)
T ss_pred ccChhhcccccceeehhh---hhhhcccC------hhhhcccceeEEeeHHHHHHHHhhHHHHHHH
Confidence 111111111 11223211 11222111 1234567889999999999998855554443
No 88
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.66 E-value=1.3e-07 Score=77.89 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=81.5
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCC----CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPT----GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS 221 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~----g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~ 221 (307)
+++|+++....|.-.|||+ .+--|. +...|.+|.|..+.| |++..||+||.-||+||.++ +.+..+++
T Consensus 5 SAGvLlYR~~aG~v~VLLv-HPGGPFWa~kD~GAWSIPKGey~~g-Edp~~AArREf~EE~Gi~vd-GP~~~lG~----- 76 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLV-HPGGPFWAGKDDGAWSIPKGEYTGG-EDPWLAARREFSEEIGICVD-GPRIDLGS----- 76 (161)
T ss_pred cceeEEEEecCCCEEEEEe-cCCCCccccCCCCcccccccccCCC-cCHHHHHHHHhhhhhceeec-Cchhhhhh-----
Confidence 5566666655565455554 222222 234799999999998 99999999999999999995 56667764
Q ss_pred CCceeecCCCccceEEEEEEEEEechhHHHHH------hccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 222 TGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQ------LQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 222 ~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~------~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
+.-+|+ ..+..|.++...+...++. |....+..+.--|...+-|+++.++...+.
T Consensus 77 -----~kQ~GG--KvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil 137 (161)
T COG4119 77 -----LKQSGG--KVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKIL 137 (161)
T ss_pred -----hccCCC--cEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHh
Confidence 334444 2455666666555544432 222222234556888899999999976664
No 89
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=87.67 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=85.9
Q ss_pred EeCCEEEEEEEEecCCceEEEEEEeeecCC-------------------------CCeEEEccceecCCCCCCHHHHHHH
Q 021805 142 ARGPAVAVLILLDSEGETYAILTEQVRVPT-------------------------GRVILELPAGMLDDDKGDFVGTAVR 196 (307)
Q Consensus 142 ~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~-------------------------g~~~wElPaG~vD~g~Et~~~AA~R 196 (307)
.+-++|.|+++. ....++||+||+|.++ -++++|++||.||.+ -++.+-|..
T Consensus 24 q~~~~v~ill~~--r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke-~s~~eia~e 100 (405)
T KOG4432|consen 24 QKMSSVSILLFH--RDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKE-LSPREIASE 100 (405)
T ss_pred hhccceEEEEEc--cchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccc-cCHHHHhHH
Confidence 345678888663 3445799999999875 145899999999996 899999999
Q ss_pred HHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchh
Q 021805 197 EVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYR 276 (307)
Q Consensus 197 El~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvple 276 (307)
|+.||+|+++++++|+.+.. +-...+.+...+++|+|+..... .+ ..++| --.+.+.+.-+.++
T Consensus 101 ev~eecgy~v~~d~l~hv~~---------~~~g~~~s~sa~~l~y~ei~es~-ki----s~ggg--v~~~~~~~~~~a~e 164 (405)
T KOG4432|consen 101 EVAEECGYRVDPDDLIHVIT---------FVVGAHQSGSAQHLYYAEIDESM-KI----SEGGG--VITKVYYPVNVARE 164 (405)
T ss_pred HHHHHhCCcCChhHceEEEE---------EEeccccCccchheeeeecchhh-cc----ccCCc--eeeEEEEeehhhHH
Confidence 99999999999999988864 33334445567889998764321 11 11122 12345555566667
Q ss_pred hHhhccC
Q 021805 277 ELWRTTP 283 (307)
Q Consensus 277 el~~~i~ 283 (307)
+....+.
T Consensus 165 ~ar~~i~ 171 (405)
T KOG4432|consen 165 IARPAIG 171 (405)
T ss_pred HHHHhhc
Confidence 7666654
No 90
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=8.8e-07 Score=82.83 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred cCCceEEEEEEe-eecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc
Q 021805 155 SEGETYAILTEQ-VRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC 233 (307)
Q Consensus 155 ~~g~~~VLLvrQ-~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~ 233 (307)
+.. ++|++++. .........|-+|+|.|+++ |++.++|+||++||||++..-.++..+. ..+.+...
T Consensus 124 n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~-e~i~~gavrEvkeetgid~ef~eVla~r---------~~H~~~~~- 191 (295)
T KOG0648|consen 124 NKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEG-EDIWHGAVREVKEETGIDTEFVEVLAFR---------RAHNATFG- 191 (295)
T ss_pred cCC-ceeEEEEecccceeecccccccceEeccc-ccchhhhhhhhHHHhCcchhhhhHHHHH---------hhhcchhh-
Confidence 443 46777643 33334566899999999998 9999999999999999965432322222 13333322
Q ss_pred ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805 234 DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 234 ~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~ 283 (307)
-...++|+.+...+.. + + . .....|+....|+|++|......
T Consensus 192 ~~ksd~f~~c~L~p~s-~---~--i--~~~~~ei~~~~Wmp~~e~v~qp~ 233 (295)
T KOG0648|consen 192 LIKSDMFFTCELRPRS-L---D--I--TKCKREIEAAAWMPIEEYVSQPL 233 (295)
T ss_pred cccccceeEEEeeccc-c---c--c--chhHHHHHHHhcccHHHhhcccc
Confidence 1122333333332221 1 0 1 23455666679999998866554
No 91
>PLN02839 nudix hydrolase
Probab=98.10 E-value=2.7e-05 Score=75.22 Aligned_cols=140 Identities=17% Similarity=0.226 Sum_probs=87.3
Q ss_pred EEEEEEEEecCCceEEEEEEeeecCCC---CeEE-EccceecCCCCCCHHHHHHHHHHHHhCCccc-ccceeeccccccC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVPTG---RVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMIDLTAFLYP 220 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p~g---~~~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~-~~~L~~L~~l~~~ 220 (307)
+|-+-.++..+++.++.+ +.|.... .++| .+.||.+..| |++.++++||..||.|+... ...++..+.+.
T Consensus 205 GVHlNGyv~~~g~~~lWV--~RRS~tK~t~PGmLDn~VAGGi~aG-esp~etliREa~EEAgLp~~l~~~~~~~G~Vs-- 279 (372)
T PLN02839 205 GVHMNGYVERDGQKFLWI--GKRSLSKSTYPGMLDHLVAGGLPHG-ISCGENLVKECEEEAGISKAIADRAIAVGAVS-- 279 (372)
T ss_pred EEEEEEEEecCCCeEEEe--eccCCCCCCCCChhhhccccCccCC-CCHHHHHHHHHHHHcCCCHHHHhcceEeEEEE--
Confidence 344444444445444444 3344432 3344 4679999998 99999999999999999753 12455555431
Q ss_pred CCCceeecCCC-ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh---hHHHHHHHHHH
Q 021805 221 STGCKFFPSAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA---KVLTAIALYEM 296 (307)
Q Consensus 221 ~~~~~~~~spg-~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~---ktl~al~L~~~ 296 (307)
.++..+. ...+. +|++....+.+-+ . ...++|..+..+++++|+.+.+.++ |.=+|+.+...
T Consensus 280 ----Y~~~~~~g~~~ev--ly~YDLeLP~df~-------P-~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDF 345 (372)
T PLN02839 280 ----YMDIDQYCFKRDV--LFCYDLELPQDFV-------P-KNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDF 345 (372)
T ss_pred ----EEEEcCCccccCE--EEEeeeecCCccc-------c-CCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 1222332 22333 3444444333211 1 2478999999999999999888643 45567778889
Q ss_pred HHhcCCCC
Q 021805 297 ASKEELLP 304 (307)
Q Consensus 297 ~~~~g~lp 304 (307)
+-++|.+-
T Consensus 346 LiRhG~It 353 (372)
T PLN02839 346 LFRHGFIR 353 (372)
T ss_pred HHHcCCCC
Confidence 99999874
No 92
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.95 E-value=0.0001 Score=58.60 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=34.5
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCC
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl 204 (307)
+++|.+|...+.-+++||||+|.++.+ ++.+++..||+.||.++
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~-~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEE-ADGEEALLSALKKALRL 58 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCC-cCHHHHHHHHHHHHhCc
Confidence 587766544444456999999999987 88899999999999764
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.58 E-value=0.00018 Score=62.60 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=72.2
Q ss_pred EEEEEEEEecCCceEEEEEEeeecC-CCCeEE-EccceecCCCCCCHHHHHHHHHHHHhCCcccccceee-ccccccCCC
Q 021805 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMID-LTAFLYPST 222 (307)
Q Consensus 146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~-L~~l~~~~~ 222 (307)
|-++.++ +.+| ++||+|+.-.- .-...| .-..|+=-+| |+..+||+|-+.+|+|+++...+... +..+-
T Consensus 35 AFS~~lF-ne~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~-es~~~A~~rRl~~ELGie~~~~d~~~il~rf~---- 106 (185)
T COG1443 35 AFSSFLF-NERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPG-ESNEDAARRRLAYELGIEPDQYDKLEILPRFR---- 106 (185)
T ss_pred hhheeEE-CCCC--ceeeehhhhhcccCcccccccccCCCcCC-CchHHHHHHHHHHHhCCCCcccCccccccceE----
Confidence 4456655 2344 47765542110 011123 2334555577 99999999999999999986312222 21110
Q ss_pred CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805 223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 286 (307)
Q Consensus 223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k 286 (307)
-.+.+++...-+|.+.++.+...... .++++|..+.+|++++++.++..+..
T Consensus 107 YrA~~~~~~~E~Eic~V~~~~~~~~~------------~~npdEV~~~~wv~~e~l~~~~~~~~ 158 (185)
T COG1443 107 YRAADPDGIVENEICPVLAARLDSAL------------DPNPDEVMDYRWVSPEDLKEMVDATP 158 (185)
T ss_pred EeccCCCCcceeeeeeEEEEeecCCC------------CCChHHhhheeccCHHHHHHhhcCCc
Confidence 01123344445677777777654311 24778999999999999999987443
No 94
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.0053 Score=55.35 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=26.0
Q ss_pred eEEEccceecCCCCCCHHHHHHHHHHHHh
Q 021805 174 VILELPAGMLDDDKGDFVGTAVREVEEET 202 (307)
Q Consensus 174 ~~wElPaG~vD~g~Et~~~AA~REl~EET 202 (307)
..|.+||||+|+| |..-.+.+||+.||.
T Consensus 150 ~~WAiPGGmvdpG-E~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 150 GEWAIPGGMVDPG-EKVSATLKREFGEEA 177 (275)
T ss_pred CcccCCCCcCCch-hhhhHHHHHHHHHHH
Confidence 3699999999998 999999999999995
No 95
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=95.95 E-value=0.014 Score=46.77 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=26.8
Q ss_pred EecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccc
Q 021805 153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (307)
Q Consensus 153 l~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~ 207 (307)
++++| +++|.+|...+.-+++||||.--++. ++..+.+.+.+.+..|+.+.
T Consensus 5 ~~~~~--~~Ll~kRp~~gll~GLwefP~~e~~~--~~~~~~l~~~~~~~~~~~~~ 55 (114)
T PF14815_consen 5 IRSQG--RVLLEKRPEKGLLAGLWEFPLIESDE--EDDEEELEEWLEEQLGLSIR 55 (114)
T ss_dssp EETTS--EEEEEE--SSSTTTT-EE--EEE-SS--S-CHHHHHHHTCCSSS-EEE
T ss_pred EEeCC--EEEEEECCCCChhhcCcccCEeCccC--CCCHHHHHHHHHHHcCCChh
Confidence 33444 58886665544545699999977774 33355555666677787653
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=94.32 E-value=0.0086 Score=56.95 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=61.8
Q ss_pred cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc
Q 021805 155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD 234 (307)
Q Consensus 155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~ 234 (307)
++...++||+.+... .-|.+|-|++..+ |+-.+||.||+.||||.+... .+.+ ..+..-...+
T Consensus 91 d~~~sr~llv~g~qa----~sw~fprgK~~kd-esd~~caiReV~eetgfD~sk-ql~~-----------~e~Ie~nI~d 153 (348)
T KOG2937|consen 91 DEKRSRCLLVKGWQA----SSWSFPRGKISKD-ESDSDCAIREVTEETGFDYSK-QLQD-----------NEGIETNIRD 153 (348)
T ss_pred hhhhhhhheeeceec----ccccccCcccccc-chhhhcchhcccchhhcCHHH-Hhcc-----------ccCcccchhh
Confidence 344456888877653 2499999999996 999999999999999999852 2211 1122223445
Q ss_pred eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805 235 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW 279 (307)
Q Consensus 235 e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~ 279 (307)
+...+|+..+....-. ..+ +---|....+|..++++.
T Consensus 154 q~~~~fIi~gvs~d~~---f~~-----~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 154 QLVRLFIINGVSEDTN---FNP-----RVRKEISKIHWHYLDHLV 190 (348)
T ss_pred ceeeeeeeccceeeee---cch-----hhhccccceeeeehhhhc
Confidence 5666666532211000 000 123355567899999883
No 97
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=94.01 E-value=0.97 Score=40.16 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=45.8
Q ss_pred cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccccc-cee---eccccccCCCCceeecC-
Q 021805 155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLE-DMI---DLTAFLYPSTGCKFFPS- 229 (307)
Q Consensus 155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~-~L~---~L~~l~~~~~~~~~~~s- 229 (307)
..+..+|||.+. . ...+-||||.+.+| |+.+++..|.|.+-.|..-... ++. .++...-+.+...+||.
T Consensus 54 ~h~~PHvLLLq~-~----~~~fkLPGg~l~~g-E~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~~YPYl 127 (188)
T PF13869_consen 54 EHGHPHVLLLQI-G----NTFFKLPGGRLRPG-EDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPFMYPYL 127 (188)
T ss_dssp ETTEEEEEEEEE-T----TTEEE-SEEE--TT---HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS--BSS-
T ss_pred cCCCcEEEEEec-c----CccccCCccEeCCC-CChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCCCCCCC
Confidence 456678888763 2 12789999999998 9999999999999998864221 111 23332223444445552
Q ss_pred ---CCccceEEEEEEEEE
Q 021805 230 ---AGGCDEEISLFLYRG 244 (307)
Q Consensus 230 ---pg~~~e~i~lf~~~~ 244 (307)
.....|.+.+|++.-
T Consensus 128 P~HitkPKE~~klylV~L 145 (188)
T PF13869_consen 128 PPHITKPKECIKLYLVQL 145 (188)
T ss_dssp -TT-SS-SEEEEEEEEE-
T ss_pred CcccCChhheeEEEEEec
Confidence 123467778887653
No 98
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=93.96 E-value=0.24 Score=42.91 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred ceecCCCC--CCHHH----HHHHHHHHHhCCcccc-cceeeccccccCCCCceeecCCCccceEEEE---EEEEEechhH
Q 021805 180 AGMLDDDK--GDFVG----TAVREVEEETGIQLKL-EDMIDLTAFLYPSTGCKFFPSAGGCDEEISL---FLYRGRVDKE 249 (307)
Q Consensus 180 aG~vD~g~--Et~~~----AA~REl~EETGl~i~~-~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l---f~~~~~~~~~ 249 (307)
||++..++ ++..+ .+.||+.||.++.-.. .++..|+- +..+. ..--.+|+ |..+... .
T Consensus 97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGl---------INdd~-neVgkVHiG~lf~~~~k~--n 164 (203)
T COG4112 97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGL---------INDDT-NEVGKVHIGALFLGRGKF--N 164 (203)
T ss_pred ccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeee---------ecCCC-cccceEEEEEEEEeeccc--c
Confidence 67766542 23333 3789999999987431 34555542 11111 11112333 4433321 1
Q ss_pred HHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805 250 IIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI 291 (307)
Q Consensus 250 ~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al 291 (307)
+. ...+.+.++.+|+.++++.+.-.+-.+.+++
T Consensus 165 dv---------evKEkd~~~~kwik~~ele~~y~~~EtWS~~ 197 (203)
T COG4112 165 DV---------EVKEKDLFEWKWIKLEELEKFYGVMETWSKI 197 (203)
T ss_pred ce---------eeeecceeeeeeeeHHHHHHHhhhhHHHHHH
Confidence 11 1246678899999999998855455555444
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.08 E-value=0.16 Score=45.42 Aligned_cols=75 Identities=23% Similarity=0.204 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhCCccc---ccceeeccccccCCCCceeecCC--Cc--cceEEEEEEEEEechhHHHHHhccCCCcc
Q 021805 189 DFVGTAVREVEEETGIQLK---LEDMIDLTAFLYPSTGCKFFPSA--GG--CDEEISLFLYRGRVDKEIIMQLQGKETGL 261 (307)
Q Consensus 189 t~~~AA~REl~EETGl~i~---~~~L~~L~~l~~~~~~~~~~~sp--g~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~ 261 (307)
....||.|-|+=|+||... ++++..++. ..|..+ |. -+|.-++.+....++ -.
T Consensus 104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltr--------ihYkA~sdg~wGEhEiDYiL~~~~~~~------------~n 163 (225)
T KOG0142|consen 104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTR--------IHYKAPSDGIWGEHEIDYILFLVKDVT------------LN 163 (225)
T ss_pred HHHHHHHHHHHHhhCCCccccCHHHccccee--------eeeecCCCCCcccceeeEEEEEeccCC------------CC
Confidence 5788999999999999864 346667764 345433 32 344444444444322 24
Q ss_pred CCCCceEEEEEEchhhHhhccC
Q 021805 262 RDHGELIKVRVVPYRELWRTTP 283 (307)
Q Consensus 262 ~~~~E~i~v~wvpleel~~~i~ 283 (307)
++++|..+++||+.+|++.+++
T Consensus 164 PnpnEv~e~ryvs~eelkel~~ 185 (225)
T KOG0142|consen 164 PNPNEVSEIRYVSREELKELVA 185 (225)
T ss_pred CChhhhhHhheecHHHHHHHHh
Confidence 5779999999999999999987
No 100
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=84.08 E-value=3.8 Score=35.87 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=36.6
Q ss_pred EEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhC
Q 021805 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETG 203 (307)
Q Consensus 148 aVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETG 203 (307)
+|+++- ...-..|||. |.+ .-++.+|||.+++| |+-.+...|=+-|-+|
T Consensus 74 gvlivh-eH~lPHvLLL-Qig----~tf~KLPGG~L~pG-E~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 74 GVLIVH-EHNLPHVLLL-QIG----NTFFKLPGGRLRPG-EDEADGLKRLLTESLG 122 (221)
T ss_pred eeEEEe-ecCCCeEEEE-eeC----CEEEecCCCccCCC-cchhHHHHHHHHHHhc
Confidence 344442 3333467765 543 35789999999998 9999999999999999
No 101
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=83.27 E-value=1.6 Score=40.40 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=74.0
Q ss_pred EEEEEeeecCCCC-e--EE-EccceecCCCCCCHHHHHHHHHHHHhCCccc-ccceeeccccccCCCCceeecCCCccce
Q 021805 161 AILTEQVRVPTGR-V--IL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMIDLTAFLYPSTGCKFFPSAGGCDE 235 (307)
Q Consensus 161 VLLvrQ~R~p~g~-~--~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~-~~~L~~L~~l~~~~~~~~~~~spg~~~e 235 (307)
+-+=.+.|.+... | .| .+.||.+--| -...++|++|..||.++... ..+++..+.+.. -.+-...|...+
T Consensus 148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g-~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy----~~~esr~~~~pe 222 (306)
T KOG4313|consen 148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVG-FGIKETAIKEAAEEANLPSDLVKNLVSAGCVSY----YKFESRQGLFPE 222 (306)
T ss_pred eEEEecccCCccccCcchhhhhhccccccC-chHHHHHHHHHHHhcCCchhhHhcceecceeEE----EeeehhhccCcc
Confidence 3333355555432 1 23 4568888776 78999999999999999873 346666655311 001122333344
Q ss_pred EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC--ChhHHHHHHHHHHHHhcCC
Q 021805 236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP--DAKVLTAIALYEMASKEEL 302 (307)
Q Consensus 236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~--D~ktl~al~L~~~~~~~g~ 302 (307)
.-++| ....+.+-+ + ...++|......+++.|..+.++ |-|.-.|+-+...+.++|.
T Consensus 223 ~qYVf--DL~l~~d~i-------P-~~nDGEV~~F~Lltl~~~v~~l~~k~FKpncAlV~iDflirHg~ 281 (306)
T KOG4313|consen 223 TQYVF--DLELPLDFI-------P-QNNDGEVQAFELLTLKDCVERLFTKDFKPNCALVVIDFLIRHGT 281 (306)
T ss_pred ceEEE--eccCchhhc-------C-CCCCCceeeEeeecHHHHHHHHHhhccCCCcceEEEEEeeccee
Confidence 44445 333343322 1 23688999999999999877765 5555445444444444444
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=60.86 E-value=43 Score=32.67 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=23.0
Q ss_pred EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcc
Q 021805 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206 (307)
Q Consensus 160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i 206 (307)
+++|.++...+.-+++|+||. ++.. + ..+|..|+.|+..
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~--~~~~-~-----~~~~~~~~~~~~~ 281 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQ--FADE-E-----ELRQWLAQRGIAA 281 (350)
T ss_pred EEEEEECCccChhhccccCCC--Ccch-h-----hHHHHHHhcCCch
Confidence 577765544444456999996 3321 2 2455667778753
No 103
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=59.17 E-value=45 Score=27.06 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=39.1
Q ss_pred eCCCCCHHHHHhhhcChhHHHHHHHhhhhcccccCCCeee--EEEEEeeEeeecc
Q 021805 64 AAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLL--KQVLIQGVDMFGK 116 (307)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~~~~~~~~~~L--~~v~i~~~~~fg~ 116 (307)
|.|.-+-+.|.+++.-++.+.|...-+. +..+++|-- ..++|++++.|..
T Consensus 16 lg~~~~~~~L~~vl~g~ll~~w~~~a~~---~~~~g~y~~y~~~~~I~sv~~~~~ 67 (117)
T PF13355_consen 16 LGPPHDIDSLSEVLTGPLLSQWQDRAQW---LKANGWYWEYDHKLKIDSVEVFSD 67 (117)
T ss_pred hCCCcchhHHHHHhhHHHHHHHHHHHHH---HHHcCCeEEEeeeeEEEEEEEcCC
Confidence 4555666789999999999999877664 555777666 5789999999874
No 104
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=46.69 E-value=18 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=11.8
Q ss_pred ccceecCCCCCCHHHHHHHHHHHHh
Q 021805 178 LPAGMLDDDKGDFVGTAVREVEEET 202 (307)
Q Consensus 178 lPaG~vD~g~Et~~~AA~REl~EET 202 (307)
.-||..-+| --+...|.||+-||.
T Consensus 13 ClggLasPg-Pvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPG-PVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCC-CCCchHHHHHHHHHH
Confidence 346777777 778889999999995
No 105
>PF14443 DBC1: DBC1
Probab=36.20 E-value=79 Score=26.38 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=24.3
Q ss_pred CeEEEccceecCCCCCCHHHHHHHHHHHHhCCccc
Q 021805 173 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (307)
Q Consensus 173 ~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~ 207 (307)
.|.-+|=||--+.+...+..+|+|=++|-||++..
T Consensus 25 ~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 25 PWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred cCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 34334445544443346789999999999999984
No 106
>PF08968 DUF1885: Domain of unknown function (DUF1885); InterPro: IPR015062 This family consists of hypothetical proteins produced by bacteria of the Bacillus genus. ; PDB: 1T6A_A.
Probab=29.96 E-value=49 Score=27.51 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=24.5
Q ss_pred CCeEEEeCCCCCHHHHHhhhcChhHHHHHHHhhhhcccccCC
Q 021805 58 QPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANG 99 (307)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~~~~~~~ 99 (307)
.-|.|+||++-+..|.-|+.++-.|-- +.++.+|.|++..
T Consensus 84 ~~IQv~LP~~AThGDK~KANEfckfLA--k~l~~EL~LFNGR 123 (130)
T PF08968_consen 84 SYIQVVLPDGATHGDKGKANEFCKFLA--KKLKGELHLFNGR 123 (130)
T ss_dssp EEEEEE--TT--HHHHHHHHHHHHHHH--HHH-EEEE-TTS-
T ss_pred eEEEEECCCCCccCcchhHHHHHHHHH--HHhhheeEEecCe
Confidence 459999999999999998655544443 7888887776654
No 107
>PF06615 DUF1147: Protein of unknown function (DUF1147); InterPro: IPR009527 This family consists of several short Circovirus proteins of unknown function.
Probab=23.18 E-value=79 Score=21.87 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=18.3
Q ss_pred EEEEeeecCCCCeEEEccceecC
Q 021805 162 ILTEQVRVPTGRVILELPAGMLD 184 (307)
Q Consensus 162 LLvrQ~R~p~g~~~wElPaG~vD 184 (307)
+|+-|.|.|..+..+|-.|||+.
T Consensus 17 llilqtrkphtgnhletsggmvt 39 (59)
T PF06615_consen 17 LLILQTRKPHTGNHLETSGGMVT 39 (59)
T ss_pred EEEEEccCCCCCCceeccCCeeh
Confidence 56668888887778899999875
No 108
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=22.46 E-value=1.7e+02 Score=27.41 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=32.5
Q ss_pred EEEEEeeecCCCCeEEEccceec-CCCCCCHHHHHHHHHHHHhCCcc
Q 021805 161 AILTEQVRVPTGRVILELPAGML-DDDKGDFVGTAVREVEEETGIQL 206 (307)
Q Consensus 161 VLLvrQ~R~p~g~~~wElPaG~v-D~g~Et~~~AA~REl~EETGl~i 206 (307)
+|||+| ..+. ...|-||-+-. +.+ ++...+|.|+|++=.|=..
T Consensus 141 yLLV~~-k~g~-~s~w~fP~~~~s~~~-~~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 141 YLLVKR-KFGK-SSVWIFPNRQFSSSE-KTLRGHAERDLKVLSGENK 184 (263)
T ss_pred EEEEee-ccCc-cceeeCCCcccCCcc-chHHHHHHHHHHHHhcchh
Confidence 555552 2222 23899999999 887 9999999999999888654
No 109
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=22.06 E-value=1.7e+02 Score=19.90 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=19.5
Q ss_pred ceeeEEeCCCCCCCeEEEeCCCCCHHHHHhhhcChhHHHHHHH
Q 021805 46 LTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKN 88 (307)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~w~~~ 88 (307)
+++.|++... ...+...+.++|..+|. +|+.|+.+
T Consensus 4 ~~~ki~~~~~--~Gl~y~vT~~~s~~~L~------k~~~wld~ 38 (45)
T PF12123_consen 4 MTAKIIFQSK--DGLPYFVTDPLSDAELD------KFTAWLDE 38 (45)
T ss_dssp --EEEEE-T---TS-EEEEE----HHHHH------HHHHHHHH
T ss_pred cEEEEEEecC--CCcEEEEeCCCCHHHHH------HHHHHHHh
Confidence 3566777652 45677777889999998 58999865
No 110
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=21.19 E-value=1.9e+02 Score=22.08 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=34.5
Q ss_pred eeEEeCCCCCCCeEEEeCCCCCHHHHHhhhcChhHHHHHHHhhhhcccccCCCeeeEEEEEeeEee
Q 021805 48 HSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDM 113 (307)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~~~~~~~~~~L~~v~i~~~~~ 113 (307)
+-+-+|+ ++++.|.+-|+.+-.|++. .+=++ ..+..+ +..++||+...++.++
T Consensus 2 ~~V~lPn--~~~~~v~vrp~~tv~dvLe----~aCk~--~~ldp~-----eh~Lrlk~~~~e~~~~ 54 (77)
T cd01818 2 SWVCLPD--NQPVLTYLRPGMSVEDFLE----SACKR--KQLDPM-----EHYLRLKFLRMENHEY 54 (77)
T ss_pred CEEECCC--CceEEEEECCCCCHHHHHH----HHHHh--cCCChh-----HheeEEEEEecCCccE
Confidence 3467898 4889999999999888884 33333 344433 4566777555444433
Done!