Query 021806
Match_columns 307
No_of_seqs 151 out of 227
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 09:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 3.2E-37 1.1E-41 233.5 5.0 62 149-210 2-64 (64)
2 1b9w_A Protein (merozoite surf 10.3 61 0.0021 26.2 0.1 20 103-122 69-89 (95)
3 3hde_A Lysozyme; antimicrobial 7.6 2E+02 0.007 23.9 2.3 26 150-175 137-162 (165)
4 2anv_A Lysozyme; direct method 7.2 1.3E+02 0.0045 24.3 0.9 21 151-172 123-143 (146)
5 1wr7_A NEDD4-2; all-beta, liga 7.2 2.8E+02 0.0097 17.9 2.4 23 135-157 1-29 (41)
6 1xju_A Lysozyme; secreted inac 7.1 2.5E+02 0.0085 23.3 2.6 27 150-176 127-153 (163)
7 1qfq_B N36, 36-MER N-terminal 6.9 2.2E+02 0.0077 19.1 1.7 15 163-177 4-18 (35)
8 2l1q_A Liver-expressed antimic 6.4 1.7E+02 0.0059 20.4 1.0 11 28-38 2-12 (40)
9 1xjt_A Lysozyme; open conforma 6.2 2.5E+02 0.0086 24.0 2.2 27 150-176 155-181 (191)
10 2k2w_A Recombination and DNA r 5.5 1.8E+02 0.0062 24.1 0.8 14 148-161 16-29 (118)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=3.2e-37 Score=233.47 Aligned_cols=62 Identities=61% Similarity=1.011 Sum_probs=58.5
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhCCCccccchhHHhhhcCCCCCCccccccc
Q 021806 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKPYLHESRHQHAMRRARGCGGRFLNTKK 210 (307)
Q Consensus 149 eePvyVNaKQY~rIlrRRq~RaK~e~~~k~~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~~ 210 (307)
|+|||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 6999999999999999999999999999985 8899999999999999999999999999975
No 2
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=10.26 E-value=61 Score=26.19 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.4
Q ss_pred ceeec-cCCCCCCcccccccC
Q 021806 103 SIVLT-SYPYTDPQHVGVITP 122 (307)
Q Consensus 103 s~a~~-~~Py~dp~ygg~~aa 122 (307)
-|+|+ ..||..|||.|+|-.
T Consensus 69 kIvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 69 EIVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp CEEEECCSTTEEEEGGGTEEE
T ss_pred cEEEECCCCCCCcceeeEEec
Confidence 46777 779999999999854
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=7.57 E-value=2e+02 Score=23.94 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHh
Q 021806 150 EPVYVNAKQYRGILRRRQSRAKAELE 175 (307)
Q Consensus 150 ePvyVNaKQY~rIlrRRq~RaK~e~~ 175 (307)
.-+|++-|-..++.+||++..++=+.
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l~ 162 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICLW 162 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHTG
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHHc
Confidence 35667778999999999988766443
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=7.19 E-value=1.3e+02 Score=24.26 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=16.6
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 021806 151 PVYVNAKQYRGILRRRQSRAKA 172 (307)
Q Consensus 151 PvyVNaKQY~rIlrRRq~RaK~ 172 (307)
-+|++-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566778 89999999987754
No 5
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=7.17 E-value=2.8e+02 Score=17.93 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCC------CCCCceeechh
Q 021806 135 GMHQARMPLPLE------MEEEPVYVNAK 157 (307)
Q Consensus 135 G~~~~R~pLP~~------~~eePvyVNaK 157 (307)
|-+....+||.. ....+.|||..
T Consensus 1 ~~p~~~~~LP~gWe~~~~~~G~~Yy~n~~ 29 (41)
T 1wr7_A 1 GSPGIQSFLPPGWEMRIAPNGRPFFIDHN 29 (41)
T ss_dssp CTTCCCCSSCTTEEEEECTTSCEEEEETT
T ss_pred CCCCccCCCCCCcEEEEcCCCCEEEEECC
Confidence 345566788873 24589999864
No 6
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.14 E-value=2.5e+02 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHhh
Q 021806 150 EPVYVNAKQYRGILRRRQSRAKAELEK 176 (307)
Q Consensus 150 ePvyVNaKQY~rIlrRRq~RaK~e~~~ 176 (307)
.-+|++-|...++.+||++.+.+=+.+
T Consensus 127 ~W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 127 DFVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 356677788999999999988766543
No 7
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.92 E-value=2.2e+02 Score=19.06 Aligned_cols=15 Identities=40% Similarity=0.537 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhh
Q 021806 163 LRRRQSRAKAELEKK 177 (307)
Q Consensus 163 lrRRq~RaK~e~~~k 177 (307)
-|||++||...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 478888876555533
No 8
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=6.43 E-value=1.7e+02 Score=20.38 Aligned_cols=11 Identities=27% Similarity=0.909 Sum_probs=8.8
Q ss_pred CCccccCCCCc
Q 021806 28 RPWWSGTGTGA 38 (307)
Q Consensus 28 ~PWW~g~G~~~ 38 (307)
-|.|+++|.-+
T Consensus 2 TP~WR~vs~kP 12 (40)
T 2l1q_A 2 TPFWRGVSLRP 12 (40)
T ss_dssp CCTTSSCSSBC
T ss_pred cchhhhhcCCc
Confidence 49999998855
No 9
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=6.20 E-value=2.5e+02 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHhh
Q 021806 150 EPVYVNAKQYRGILRRRQSRAKAELEK 176 (307)
Q Consensus 150 ePvyVNaKQY~rIlrRRq~RaK~e~~~ 176 (307)
.-+|++-|...++.+||++.+.+=+.+
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 356677788999999999987766543
No 10
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=5.46 E-value=1.8e+02 Score=24.07 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=10.9
Q ss_pred CCCceeechhhhHH
Q 021806 148 EEEPVYVNAKQYRG 161 (307)
Q Consensus 148 ~eePvyVNaKQY~r 161 (307)
..-=||.|+|||.+
T Consensus 16 GKtFvFLn~KQ~kk 29 (118)
T 2k2w_A 16 DKVFLFLNAKQYKK 29 (118)
T ss_dssp TCEEEESCSSTHHH
T ss_pred CCEEEEeCHHHHHH
Confidence 34568999999975
Done!