Query 021806
Match_columns 307
No_of_seqs 151 out of 227
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 09:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021806.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021806hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 8.3 42 0.0031 28.5 0.4 10 150-159 48-57 (276)
2 d1ob1c2 g.3.11.4 (C:46-96) Mer 8.1 70 0.0051 21.6 1.4 23 101-123 26-49 (51)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 6.4 60 0.0043 27.6 0.4 10 151-160 54-63 (282)
4 d1xjua_ d.2.1.3 (A:) Endolysin 6.3 1.3E+02 0.0097 22.1 2.4 27 152-178 129-155 (158)
5 d2a84a1 c.26.1.4 (A:3-288) Pan 5.5 56 0.0041 27.8 -0.3 12 150-161 62-73 (286)
6 d1y7ua1 d.38.1.1 (A:8-171) Acy 4.7 3.3E+02 0.024 20.3 3.9 25 156-180 135-159 (164)
7 d2huja1 a.24.26.1 (A:1-120) Hy 4.6 3.1E+02 0.022 20.6 3.5 41 153-193 34-74 (120)
8 d1z60a1 g.49.1.2 (A:328-386) T 3.4 1.1E+02 0.0082 20.9 -0.0 6 186-191 48-53 (59)
9 d1zuoa1 d.20.1.1 (A:201-362) U 3.3 1.9E+02 0.014 21.6 1.4 28 137-164 133-160 (162)
10 d1e0na_ b.72.1.1 (A:) Hypothet 3.1 1.7E+02 0.012 17.3 0.6 10 149-158 10-19 (27)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=8.33 E-value=42 Score=28.51 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=8.1
Q ss_pred Cceeechhhh
Q 021806 150 EPVYVNAKQY 159 (307)
Q Consensus 150 ePvyVNaKQY 159 (307)
-.|||||.||
T Consensus 48 vSIFVNP~QF 57 (276)
T d1v8fa_ 48 VSVFVNPLQF 57 (276)
T ss_dssp EEECCCGGGC
T ss_pred EEEEecCccC
Confidence 3689999993
No 2
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=8.05 E-value=70 Score=21.60 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.8
Q ss_pred ccceeec-cCCCCCCcccccccCC
Q 021806 101 GHSIVLT-SYPYTDPQHVGVITPY 123 (307)
Q Consensus 101 g~s~a~~-~~Py~dp~ygg~~aaY 123 (307)
+.-|+|. .-|-..|||.|+|-.|
T Consensus 26 skkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 26 GKKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp SCCCEEEECSTTCCEEGGGTEECC
T ss_pred cceEEEEecCCCCCcccceEEeec
Confidence 4566776 5588889999999776
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=6.37 E-value=60 Score=27.64 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=8.2
Q ss_pred ceeechhhhH
Q 021806 151 PVYVNAKQYR 160 (307)
Q Consensus 151 PvyVNaKQY~ 160 (307)
.|||||.||.
T Consensus 54 SIFVNP~QF~ 63 (282)
T d1ihoa_ 54 SIFVNPMQFD 63 (282)
T ss_dssp EECCCGGGCS
T ss_pred EEEecCccCc
Confidence 6999998863
No 4
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=6.29 E-value=1.3e+02 Score=22.08 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=19.6
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhhhh
Q 021806 152 VYVNAKQYRGILRRRQSRAKAELEKKV 178 (307)
Q Consensus 152 vyVNaKQY~rIlrRRq~RaK~e~~~k~ 178 (307)
+|.+-|-..++.+||++.+++=+++.+
T Consensus 129 ~~~~g~~~~GL~~RR~~E~~L~l~g~~ 155 (158)
T d1xjua_ 129 VNSNGVPLRGLKIRREKERQLCLTGLV 155 (158)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHTTTS
T ss_pred HhcCCEEChhHHHHHHHHHHHHHcccc
Confidence 334445578999999999887776643
No 5
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.51 E-value=56 Score=27.84 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.3
Q ss_pred CceeechhhhHH
Q 021806 150 EPVYVNAKQYRG 161 (307)
Q Consensus 150 ePvyVNaKQY~r 161 (307)
-.|||||.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 468999999653
No 6
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=4.71 E-value=3.3e+02 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh
Q 021806 156 AKQYRGILRRRQSRAKAELEKKVIK 180 (307)
Q Consensus 156 aKQY~rIlrRRq~RaK~e~~~k~~k 180 (307)
.+.|..-.+|+++|...+.+.+-.+
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~~~~ 159 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESKKVA 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777776665554333
No 7
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=4.56 E-value=3.1e+02 Score=20.62 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=24.0
Q ss_pred eechhhhHHHHHHHHHHHHHHHhhhhhhhCCCccccchhHH
Q 021806 153 YVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQH 193 (307)
Q Consensus 153 yVNaKQY~rIlrRRq~RaK~e~~~k~~k~rk~YlHESRH~H 193 (307)
|-.-|=|--.+.+...+=+..+..-+...|-+|||++-=..
T Consensus 34 y~~VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Qie~ 74 (120)
T d2huja1 34 YKDMKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQLRQ 74 (120)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 33444555555555555444444444458999999875433
No 8
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.40 E-value=1.1e+02 Score=20.92 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=2.4
Q ss_pred cccchh
Q 021806 186 LHESRH 191 (307)
Q Consensus 186 lHESRH 191 (307)
+||+.|
T Consensus 48 iHe~lh 53 (59)
T d1z60a1 48 VHDSLH 53 (59)
T ss_dssp TTTTSC
T ss_pred hhhhhc
Confidence 444433
No 9
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.35 E-value=1.9e+02 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCceeechhhhHHHHH
Q 021806 137 HQARMPLPLEMEEEPVYVNAKQYRGILR 164 (307)
Q Consensus 137 ~~~R~pLP~~~~eePvyVNaKQY~rIlr 164 (307)
+.+++++|.+.++--++-|.+.|.+|.|
T Consensus 133 ~~p~~~~~~~~~~y~~~~~~~~y~~~~~ 160 (162)
T d1zuoa1 133 GKARVQFGANKNQYNLARAQQSYNSIVQ 160 (162)
T ss_dssp TTCEECTTCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHhHHHHHHHHh
Confidence 4567777776654344445566777665
No 10
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.09 E-value=1.7e+02 Score=17.32 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=7.8
Q ss_pred CCceeechhh
Q 021806 149 EEPVYVNAKQ 158 (307)
Q Consensus 149 eePvyVNaKQ 158 (307)
..|+|-||.+
T Consensus 10 grpmyynaq~ 19 (27)
T d1e0na_ 10 GRPLYYNAEQ 19 (27)
T ss_dssp SSEEEEETTT
T ss_pred Cceeeeehhh
Confidence 4799999864
Done!