Query 021808
Match_columns 307
No_of_seqs 164 out of 1326
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 09:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.2E-34 1.1E-38 260.4 28.2 273 3-290 204-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.5 6E-14 2E-18 125.3 7.1 181 71-267 245-430 (451)
3 1pw4_A Glycerol-3-phosphate tr 99.3 3.4E-11 1.2E-15 107.3 15.5 165 101-276 46-212 (451)
4 3o7q_A L-fucose-proton symport 99.3 9.2E-11 3.2E-15 104.2 16.3 135 100-244 43-177 (438)
5 2cfq_A Lactose permease; trans 99.3 1.5E-12 5E-17 115.5 3.8 139 129-279 269-408 (417)
6 3o7q_A L-fucose-proton symport 99.3 3E-10 1E-14 100.9 17.7 168 71-259 251-421 (438)
7 2gfp_A EMRD, multidrug resista 99.2 5.4E-11 1.8E-15 103.6 8.7 164 101-277 18-181 (375)
8 4aps_A DI-OR tripeptide H+ sym 99.1 8E-10 2.7E-14 99.7 14.4 155 99-266 29-192 (491)
9 2xut_A Proton/peptide symporte 99.1 1.6E-09 5.6E-14 98.5 14.7 153 101-265 30-193 (524)
10 4gc0_A D-xylose-proton symport 99.0 2.5E-09 8.6E-14 96.4 14.1 107 130-236 66-178 (491)
11 4aps_A DI-OR tripeptide H+ sym 99.0 2.4E-09 8.3E-14 96.5 12.9 146 128-277 328-478 (491)
12 2gfp_A EMRD, multidrug resista 98.4 3.5E-08 1.2E-12 85.7 -0.6 130 102-243 218-349 (375)
13 2cfq_A Lactose permease; trans 98.2 2.5E-07 8.5E-12 81.8 0.3 57 102-159 26-83 (417)
14 2xut_A Proton/peptide symporte 97.9 6E-06 2E-10 74.9 4.4 81 202-282 423-514 (524)
15 2g9p_A Antimicrobial peptide l 51.8 6.1 0.00021 18.3 1.0 13 139-151 3-15 (26)
16 3sk7_A Protein SEQA; sequestra 26.7 18 0.00061 24.9 0.6 23 19-41 75-97 (116)
17 3ff5_A PEX14P, peroxisomal bio 21.3 36 0.0012 19.9 1.1 15 273-287 38-52 (54)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.2e-34 Score=260.37 Aligned_cols=273 Identities=32% Similarity=0.579 Sum_probs=197.0
Q ss_pred ccchHHHHHHHHHhccCCCChHHHHhcCCHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhccccchhhhhcchhHHH
Q 021808 3 GVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRL 82 (307)
Q Consensus 3 ~i~~~p~~~~~~~~~~~pESp~wL~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (307)
.++.+|+++.++.++++|||||||..|++.||+.+.+++.+..+..+++..+.++..++++ +.......++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--- 277 (491)
T 4gc0_A 204 ASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGR---KTGGRLLMFGVGV--- 277 (491)
T ss_dssp HTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTHHHHSCCTH---
T ss_pred hhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhh---hhhhHHHHhcccH---
Confidence 4567888888899999999999999999999999999887655443333322222111111 1112222333222
Q ss_pred HHHHHHHHHHHHhhcCchhhHHhhHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHhHHHHHHH
Q 021808 83 AFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 162 (307)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~~~~~ 162 (307)
.........++++.+++.+.+|.+.+.+..+.+..+ ....+....+..+++.+++++++||+|||+.++.+...+.++
T Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 -IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG 355 (491)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence 233344556677888889999999999888876544 445566666778899999999999999999998887777777
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhHHHHHHHHHHHHHHHhhHH
Q 021808 163 LVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 242 (307)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~~~~~~~ 242 (307)
.+.+......... ....+....++...+..+.+++.+.+.+|+||+++|+++.|++...+++++++++..++.
T Consensus 356 ~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 356 MFSLGTAFYTQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcccc-------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544332211 233444555556677778888999999999999999999999999999999988777665
Q ss_pred HHH------HhCCchhHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhcc
Q 021808 243 VAE------LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA 290 (307)
Q Consensus 243 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~e~~~~~~~~~ 290 (307)
+.. ..+....+++++++++++.+++++++||||||++||+|+.||++.
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 422 233445677888888888888889999999999999999998655
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=6e-14 Score=125.29 Aligned_cols=181 Identities=14% Similarity=0.219 Sum_probs=105.8
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHhhcCchhhHHhhHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHhhccc--C
Q 021808 71 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--G 147 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~--G 147 (307)
..+.++++..+...+... ....+.+....+.|.++++ .|.+..+.. .......+..+++.++.++++||+ |
T Consensus 245 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~ 318 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANV-----FVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRG 318 (451)
T ss_dssp HHHTSSCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666666554333221 1122334455677777776 566554443 344445556788999999999999 9
Q ss_pred chHHHHHhHHHHH-HHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhHHH
Q 021808 148 RKKLALSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA 226 (307)
Q Consensus 148 rR~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~ 226 (307)
||+.+..+..... ++.+.+ .... .. . .+.......+ .+....+..+..+.+..|.+|++.|+++.|+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~-----~~~~-~~-~--~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (451)
T 1pw4_A 319 NRGATGVFFMTLVTIATIVY-----WMNP-AG-N--PTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 388 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-----TSCC-TT-C--HHHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHH-----HHhc-cc-C--HHHHHHHHHH-HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 9998766544433 222211 1110 00 1 1112222222 222233334455578899999999999999999
Q ss_pred HHHHH-HHHHHHHhhHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 021808 227 TVNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 267 (307)
Q Consensus 227 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (307)
....+ +..+++.....+.+..+....+.+.+++.+++.+..
T Consensus 389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 98888 888877766666665554445555555555555443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=3.4e-11 Score=107.32 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=105.7
Q ss_pred hhHHhhHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHhHHHHHHHHHHHHHHHh-hcCCCCCC
Q 021808 101 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI-SGSSASSS 179 (307)
Q Consensus 101 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 179 (307)
....+.|.+.++. .+..+.... .........++.++.|+++||+|||++++.+..+.++..+....... ..+.
T Consensus 46 ~~~~~~~~~~~~~-~s~~~~g~~-~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~---- 119 (451)
T 1pw4_A 46 NFALAMPYLVEQG-FSRGDLGFA-LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI---- 119 (451)
T ss_dssp SHHHHHHHTTSST-TCSSCHHHH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS----
T ss_pred HHHHHHHHHHHHh-ccHhHHHHH-HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccH----
Confidence 3444566666666 665555544 44444557889999999999999999998887777666655443111 1111
Q ss_pred CchhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhHHHHHHHHHHHHHHHhhHHHHHHhC-CchhHHHHHH
Q 021808 180 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAG 258 (307)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 258 (307)
+..+++..+ .+.......+....+.+|.+|.+.|+++.|+......++..+++.....+....+ +...+.+.+.
T Consensus 120 ----~~l~~~~~l-~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 120 ----AVMFVLLFL-CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 194 (451)
T ss_dssp ----SHHHHHHHH-HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred ----HHHHHHHHH-HHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 112222222 2222223345556788999999999999999888877777776655544455566 6667777776
Q ss_pred HHHHHHHHHHhhccCCCC
Q 021808 259 IAVLAVVFVILFVPETQG 276 (307)
Q Consensus 259 ~~~~~~~~~~~~lpet~~ 276 (307)
+.++..+...+++||++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHhhccCCHh
Confidence 666666666677787654
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=9.2e-11 Score=104.17 Aligned_cols=135 Identities=16% Similarity=0.009 Sum_probs=89.0
Q ss_pred hhhHHhhHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHhHHHHHHHHHHHHHHHhhcCCCCCC
Q 021808 100 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS 179 (307)
Q Consensus 100 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (307)
.......|.+.+..|.+..+.....+ .......++.++.|+++||+|||++++.+....++..+.........+
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----- 116 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQS-AFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN----- 116 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHH-HHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 44555677888888988776555444 444457889999999999999999998887777666655432211111
Q ss_pred CchhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhHHHHHHHHHHHHHHHhhHHHH
Q 021808 180 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 244 (307)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (307)
.+..+++..+ .+.......+....+.+|.+|.+.|+...|+......+|..+++.....+.
T Consensus 117 ---~~~l~~~~~l-~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 117 ---YTLFLVGLFI-IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp ---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ---HHHHHHHHHH-HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222 222222334455678899999999999999988888888877765544444
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.27 E-value=1.5e-12 Score=115.54 Aligned_cols=139 Identities=13% Similarity=0.077 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHhcCccccccee
Q 021808 129 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL 208 (307)
Q Consensus 129 ~~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (307)
.+..+++.++.++++||+|||+++..+....++..+.+. . ..+ .+..+....+..... ....+..+.+
T Consensus 269 ~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~----~--~~~-----~~~~~~~~~l~~~~~-~~~~~~~~~~ 336 (417)
T 2cfq_A 269 ELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS----F--ATS-----ALEVVILKTLHMFEV-PFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT----T--CCS-----HHHHHHHTTHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH----H--hcc-----HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344667889999999999999988766554444332221 1 110 011111111111111 1112233578
Q ss_pred ecccCCcccchhhhhHH-HHHHHHHHHHHHHhhHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccCCCCCCH
Q 021808 209 NSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTF 279 (307)
Q Consensus 209 ~~ElfPt~~R~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l 279 (307)
.+|.+|++.|+++.|+. ...+.+++.+++.....+.+..+....+.+.+++.+++.+...++.||++..++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 89999999999988885 555667766665554444443333334555566666666555566777765544
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.25 E-value=3e-10 Score=100.88 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=99.8
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHhhcCchhhHHhhHHH-HHHc-CCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 021808 71 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR 148 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~Gr 148 (307)
+.++++++..+...+..... .........|.|.+ .++. |.+..... .......+..+++.++.++++||+||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCY-----VGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHhChHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44566666665543332211 12223444567777 7666 66555443 44444556678899999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhHHHHH
Q 021808 149 KKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 228 (307)
Q Consensus 149 R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~ 228 (307)
|+++..+....++..+.+... . . ........+ .........+..+.+..|.+|++ |+.+.++.. .
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-----~-~------~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 389 (438)
T 3o7q_A 325 HKVLAAYALIAMALCLISAFA-----G-G------HVGLIALTL-CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-M 389 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----C-H------HHHHHHHHH-HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHc-----C-C------cHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-H
Confidence 999887766555554433211 0 0 111222222 22333444566778889999988 888888766 6
Q ss_pred HHHHHHHHHHhhHHHHHHhC-CchhHHHHHHH
Q 021808 229 NWISNLIVAQTFLTVAELVG-TGATFLILAGI 259 (307)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 259 (307)
+.++..+++.....+.+..+ ....+.+.+.+
T Consensus 390 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 66777777776666666666 55555544333
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.18 E-value=5.4e-11 Score=103.64 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=99.3
Q ss_pred hhHHhhHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021808 101 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 180 (307)
Q Consensus 101 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (307)
......|.+.++.|.+..+.... .........++.++.|+++||+|||+.+..+....++..+.......
T Consensus 18 ~~~~~~~~~~~~~g~s~~~~g~~-~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------- 87 (375)
T 2gfp_A 18 IYIPAIADMARDLNVREGAVQSV-MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS--------- 87 (375)
T ss_dssp HHHHHHHHHHTTSSSTTHHHHHH-HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHhhhhHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc---------
Confidence 33345566677778776665444 44445557889999999999999999988777766666555433210
Q ss_pred chhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhHHHHHHHHHHHHHHHhhHHHHHHhCCchhHHHHHHHH
Q 021808 181 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 260 (307)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (307)
.+..+... +..+.......+....+.+|.+|++.|++..++......++..+++.......+..++...+.+.+.+.
T Consensus 88 --~~~l~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 88 --LTVLIAAS-AMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp --HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHH-HHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 01112221 222222222344556788999999999999999888777777666544333322223333444445544
Q ss_pred HHHHHHHHhhccCCCCC
Q 021808 261 VLAVVFVILFVPETQGL 277 (307)
Q Consensus 261 ~~~~~~~~~~lpet~~~ 277 (307)
.+..+...+++||++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHCcccCCC
Confidence 44444345567887544
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.13 E-value=8e-10 Score=99.73 Aligned_cols=155 Identities=12% Similarity=0.044 Sum_probs=90.0
Q ss_pred chhhHHhhHHHHHH------cCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchHHHHHhHHHHHHHHHHHHHHHh
Q 021808 99 INTVMYYSPTIVQM------AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFI 171 (307)
Q Consensus 99 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr-~GrR~~l~~~~~~~~~~~~~~~~~~~ 171 (307)
++....+.+.+++. .|.+..+... ..........++.+++|+++|| +|||+++..+....+++.+....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAAS-IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 33444455555544 6776555444 4444555578899999999999 89999998877666555544321
Q ss_pred hcCCCCCCCchhHHHHHHHHHHHHHHhcCcccccceeecccCCccc--chhhhhHHHHHHHHHHHHHHHhhHHHHHHhCC
Q 021808 172 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGT 249 (307)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~--R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (307)
. . +. +..+++..+ .+.......+....+.+|.+|++. |+++.++......++..+++.....+.+..++
T Consensus 105 ~--~-~~-----~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 105 P--F-GA-----SALFGSIIL-IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp C--C-ST-----THHHHHHHH-HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred h--h-hH-----HHHHHHHHH-HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1 1 11 111222222 122222234555678899999998 65566655566667776666555445554554
Q ss_pred chhHHHHHHHHHHHHHH
Q 021808 250 GATFLILAGIAVLAVVF 266 (307)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (307)
...+.+.+...+++.+.
T Consensus 176 ~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555554444444443
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.09 E-value=1.6e-09 Score=98.55 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=87.8
Q ss_pred hhHHhhHHHHH-HcC------CCChHHHHHHHHHHHHHHHHHHHHHHHhhccc-CchHHHHHhHHHHHHHHHHHHHHHhh
Q 021808 101 TVMYYSPTIVQ-MAG------FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFIS 172 (307)
Q Consensus 101 ~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-GrR~~l~~~~~~~~~~~~~~~~~~~~ 172 (307)
....+.+.+++ ..| .+..+.....+ .......++.+++|+++||+ |||+++..+....+++.+.....
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFH-SFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--- 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHH-HHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---
Confidence 33445555544 456 66655544444 44455788999999999999 99999887766665555443321
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhH---HHHHHHHHHHHHHHhhHHHHHHhCC
Q 021808 173 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM---SATVNWISNLIVAQTFLTVAELVGT 249 (307)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (307)
. .+ .+..+++..+ .+.......+....+.+|.+|++.|++..+. ......++..+++.....+.+..++
T Consensus 106 ~--~~-----~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (524)
T 2xut_A 106 E--HS-----VQGFYTGLFL-IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA 177 (524)
T ss_dssp S--SC-----HHHHHHHHHH-HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred c--cc-----HHHHHHHHHH-HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 1 00 1222222222 2222333455666888999999999766655 5555666666665544444443444
Q ss_pred chhHHHHHHHHHHHHH
Q 021808 250 GATFLILAGIAVLAVV 265 (307)
Q Consensus 250 ~~~~~~~~~~~~~~~~ 265 (307)
...+.+.+.+.++..+
T Consensus 178 ~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 178 AVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445554444444433
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.05 E-value=2.5e-09 Score=96.41 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHhHHHHHHHHHHHHHHHhhcCCCC---CC---CchhHHHHHHHHHHHHHHhcCccc
Q 021808 130 GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS---SS---GVYGWIAVIGLALYIAFFAPGMGP 203 (307)
Q Consensus 130 ~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 203 (307)
+..++|+++.|+++||+|||++++++.+...++.+...+......... .. .......++..-++.+....+..+
T Consensus 66 ~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~ 145 (491)
T 4gc0_A 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASM 145 (491)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999998877766666554432110000000 00 000111222222233333334456
Q ss_pred ccceeecccCCcccchhhhhHHHHHHHHHHHHH
Q 021808 204 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 236 (307)
Q Consensus 204 ~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~ 236 (307)
....+.+|..|++.|+...++.......+...+
T Consensus 146 ~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 146 LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 667899999999999988877666555555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.02 E-value=2.4e-09 Score=96.53 Aligned_cols=146 Identities=14% Similarity=0.046 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhcccCchHHHH-----HhHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHhcCcc
Q 021808 128 VAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG 202 (307)
Q Consensus 128 ~~~~~~~~~~~~~~l~Dr~GrR~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (307)
.....+++.++.++++||+|||+... .+....+++.+.+.............. .+.......+. +.......
T Consensus 328 ~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-g~~~~~~~ 404 (491)
T 4aps_A 328 NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVS--PLWLVGSWALV-ILGEMLIS 404 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCC--THHHHHHHHHH-HHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--HHHHHHHHHHH-HHHHHHHh
Confidence 33445677888899999999986543 343333333333322211111011111 12222222222 22223335
Q ss_pred cccceeecccCCcccchhhhhHHHHHHHHHHHHHHHhhHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccCCCCC
Q 021808 203 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGL 277 (307)
Q Consensus 203 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~ 277 (307)
+..+.+..|.+|++.|+++.|+......++..+++.......+ .+....+..++.+.+++.+..+++.|+++++
T Consensus 405 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999988888888777655433222 2233455666666666666566666766554
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.37 E-value=3.5e-08 Score=85.73 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=65.1
Q ss_pred hHHhhHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHhHHH-HHHHHHHHHHHHhhcCCCCCC
Q 021808 102 VMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VIISLVLLSWAFISGSSASSS 179 (307)
Q Consensus 102 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 179 (307)
...+.|.+.++ .|.+..... .......+..+++.++.+++.||.|||... +... ..++...+........
T Consensus 218 ~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----- 289 (375)
T 2gfp_A 218 FEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPDWFGVM----- 289 (375)
T ss_dssp HHHHCSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHHHHH--HHHHHHHTSSSSSHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhccc-----
Confidence 33445544443 454333333 333334445677788888888888773222 2111 1111111011000000
Q ss_pred CchhHHHHHHHHHHHHHHhcCcccccceeecccCCcccchhhhhHHHHHHHHHHHHHHHhhHHH
Q 021808 180 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV 243 (307)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 243 (307)
..+.......+.... .....+....+..|.+| +.|+++.|+....+.++..+++......
T Consensus 290 --~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 290 --NVWTLLVPAALFFFG-AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp --HHHHHHHHHHHHHHH-HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred --cHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222222222 22345666688899999 8899999998888887777665544333
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.18 E-value=2.5e-07 Score=81.76 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=40.0
Q ss_pred hHHhhHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHhHHHH
Q 021808 102 VMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGV 159 (307)
Q Consensus 102 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~GrR~~l~~~~~~~ 159 (307)
...+.|.+++. .|.+..+.....+ .......++.++.|+++||+|||++++.+....
T Consensus 26 ~~~~~~~~l~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~ 83 (417)
T 2cfq_A 26 YFPFFPIWLHDINHISKSDTGIIFA-AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HTTTHHHHHHTTTCCCTTTSHHHHH-HHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34466766654 6776655444444 444557889999999999999999987665544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.92 E-value=6e-06 Score=74.90 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=43.7
Q ss_pred ccccceeecccCCcccchhhhhHHHHHHHHHHHHHHHhhHHHHHH----------hCC-chhHHHHHHHHHHHHHHHHhh
Q 021808 202 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL----------VGT-GATFLILAGIAVLAVVFVILF 270 (307)
Q Consensus 202 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~~ 270 (307)
.+..+.+..|.+|++.|+++.|+......+++.+++.......+. .+. ...+.+++++.+++.+...++
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 455567889999999999999999888888888776654433221 010 111445555555555555556
Q ss_pred ccCCCCCCHHHH
Q 021808 271 VPETQGLTFLEV 282 (307)
Q Consensus 271 lpet~~~~l~e~ 282 (307)
.|++++++.++.
T Consensus 503 ~~~~~~~~~~~~ 514 (524)
T 2xut_A 503 ARSYQMQDHYRQ 514 (524)
T ss_dssp ------------
T ss_pred HHHhccchhhhh
Confidence 678777665543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=51.84 E-value=6.1 Score=18.27 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=10.6
Q ss_pred HHHhhcccCchHH
Q 021808 139 GIYLIDHFGRKKL 151 (307)
Q Consensus 139 ~~~l~Dr~GrR~~ 151 (307)
.|.++.++||+.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778999999864
No 16
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=26.66 E-value=18 Score=24.93 Aligned_cols=23 Identities=13% Similarity=0.600 Sum_probs=16.6
Q ss_pred CCCChHHHHhcCCHHHHHHHHHH
Q 021808 19 MPESPRWLFMKSDKEKAILVLSK 41 (307)
Q Consensus 19 ~pESp~wL~~~~~~~~a~~~l~~ 41 (307)
+|+||.|-+...+-.+=+..+..
T Consensus 75 Ip~TpfWViTN~NT~rKr~ml~~ 97 (116)
T 3sk7_A 75 IPNTPFWVITNNNTSRKQQMVEQ 97 (116)
T ss_dssp CTTSSCEECCCSCHHHHHHHHHH
T ss_pred CCCCCeeEEeCCCcHHHHHHHHH
Confidence 89999998887776665444443
No 17
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=21.30 E-value=36 Score=19.88 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.9
Q ss_pred CCCCCCHHHHHHHHh
Q 021808 273 ETQGLTFLEVEQMWK 287 (307)
Q Consensus 273 et~~~~l~e~~~~~~ 287 (307)
+.||.+-+||++.++
T Consensus 38 ~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 38 KKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 567777778777765
Done!