BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021811
(307 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255544688|ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
Length = 377
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/304 (83%), Positives = 277/304 (91%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
MVK A+KEYGV+CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL
Sbjct: 68 MVKSAIKEYGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILH 127
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEMQCDIIKIGNLVR KERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK
Sbjct: 128 DEMQCDIIKIGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 187
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVR+IVEDC+QNK+HPVYHIKILM+KKELEKDPAL NENWDRFLPKFKKKNVK KV
Sbjct: 188 GLKQVRKIVEDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKKNVKHNKV 247
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KEKKPYTPFPP QPSK+D+ LESGEYFL+ +KK++KKWQEKQE+QAEKTAENKRKRD
Sbjct: 248 KRKEKKPYTPFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTAENKRKRD 307
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
AF+PPEE Q++ ++EDK NDVAA+A S+K+KAK K+ ENIN EEYIAASGE P
Sbjct: 308 TAFVPPEEHRDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYIAASGELP 367
Query: 301 SKKK 304
KKK
Sbjct: 368 KKKK 371
>gi|356501320|ref|XP_003519473.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max]
Length = 389
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/307 (79%), Positives = 271/307 (88%), Gaps = 1/307 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
MVK ALKE+GV+CELNLVEGSMTVSTTRKTRDPYII+KARDLI+LLSRS+PAPQAIKILD
Sbjct: 81 MVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSLPAPQAIKILD 140
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEMQCDIIKI +VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK
Sbjct: 141 DEMQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 200
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIVE+CM NKMHPVY+IK+LM+KKELEKDPALA ENWDRFLPKFKKKNVKQKKV
Sbjct: 201 GLKQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKV 260
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+K+KKPYTPFPPP QPSKID LE+GEYFLS ++K +K WQEKQEKQAEKTAENKRKR+
Sbjct: 261 NTKQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKRE 320
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
AFIPP+EP+ ++ED ++VA MA SLK+K KK K+K ENIN E YI S E+
Sbjct: 321 EAFIPPKEPANLVD-KSEDANSNVADMAMSLKKKTKKFGKRKSEENINAETYIIGSSEQA 379
Query: 301 SKKKKSK 307
S KK K
Sbjct: 380 SGKKSKK 386
>gi|388504376|gb|AFK40254.1| unknown [Medicago truncatula]
Length = 380
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/295 (79%), Positives = 262/295 (88%), Gaps = 1/295 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK +LKE+G+S ELNLVEGSMTVSTTRKT+DPYIIVKARDLIRLLSRSVPAPQAIK+LD
Sbjct: 72 LVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLD 131
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEMQCDIIKI LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV+ MGS+K
Sbjct: 132 DEMQCDIIKISGLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYK 191
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIVE+CM NKMHPVY+IKILM+KKELEKDPALA ENWDRFLPKF KKNVKQKKV
Sbjct: 192 GLKQVRRIVEECMLNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKV 251
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+K KKPYTPFPPP QPSK+D LE+GEYFLS++KK +KKWQE+Q +QAEKTAENKRKRD
Sbjct: 252 NAKPKKPYTPFPPPQQPSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRD 311
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 295
+F+PP+EP+ +ED +N+VA MA SLKEKA+K K+K ENIN E YI
Sbjct: 312 ESFVPPKEPANL-VGNSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 365
>gi|357493549|ref|XP_003617063.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355518398|gb|AET00022.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 424
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/295 (79%), Positives = 262/295 (88%), Gaps = 1/295 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK +LKE+G+S ELNLVEGSMTVSTTRKT+DPYIIVKARDLIRLLSRSVPAPQAIK+LD
Sbjct: 116 LVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLD 175
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEMQCDIIKI LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV+ MGS+K
Sbjct: 176 DEMQCDIIKISGLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYK 235
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIVE+CM NKMHPVY+IKILM+KKELEKDPALA ENWDRFLPKF KKNVKQKKV
Sbjct: 236 GLKQVRRIVEECMLNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKV 295
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+K KKPYTPFPPP QPSK+D LE+GEYFLS++KK +KKWQE+Q +QAEKTAENKRKRD
Sbjct: 296 NAKPKKPYTPFPPPQQPSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRD 355
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 295
+F+PP+EP+ +ED +N+VA MA SLKEKA+K K+K ENIN E YI
Sbjct: 356 ESFVPPKEPANL-VGNSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 409
>gi|359807638|ref|NP_001241422.1| uncharacterized protein LOC100816856 [Glycine max]
gi|255639399|gb|ACU19995.1| unknown [Glycine max]
Length = 389
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/307 (79%), Positives = 271/307 (88%), Gaps = 1/307 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
MVK +LKE+GV+CELNLVEGSMTVSTTRKTRDPYII+KARDLI+LLSRS+PAPQAIKILD
Sbjct: 81 MVKSSLKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSIPAPQAIKILD 140
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEMQCDIIKI +VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK
Sbjct: 141 DEMQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 200
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIVE+CM NKMHPVY+IK+LM+KKELEKDPALA ENWDRFLPKFKKKNVKQKKV
Sbjct: 201 GLKQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKV 260
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+K+KKPYTPFPPP QPSKID LE+GEYFLS ++K +K WQEKQEKQAEKTAENKRKR+
Sbjct: 261 NTKQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKRE 320
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
AFIPP+EP+ ++ED N+VA MA SLK+K KK K+K ENI+ E YI S E+
Sbjct: 321 EAFIPPKEPANLVD-KSEDANNNVADMAISLKKKTKKFGKRKSEENIDAETYIVGSSEQA 379
Query: 301 SKKKKSK 307
S KK K
Sbjct: 380 SGKKPKK 386
>gi|224094246|ref|XP_002310107.1| predicted protein [Populus trichocarpa]
gi|222853010|gb|EEE90557.1| predicted protein [Populus trichocarpa]
Length = 379
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/305 (79%), Positives = 268/305 (87%), Gaps = 6/305 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
MVK ALKE+G+ CELN EGSMTV TT KTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+
Sbjct: 76 MVKSALKEFGIDCELNKNEGSMTVKTTIKTRDPYIIVKARDLIKLLSRSVPAPQAIKILN 135
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIGN++RNKERFVKRRQ+LVGPNSSTLKALE+LTGCYILVQGNTVAAMGSFK
Sbjct: 136 DDMSCDIIKIGNMIRNKERFVKRRQNLVGPNSSTLKALELLTGCYILVQGNTVAAMGSFK 195
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIVEDC+QNKMHPVYHIKILM+KKELEKDPAL NENWDRFLPK+KKK VKQKKV
Sbjct: 196 GLKQVRRIVEDCIQNKMHPVYHIKILMMKKELEKDPALKNENWDRFLPKYKKKTVKQKKV 255
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KSK+KK TPFPPP QPS D LE+GEYFLS++KK++KKW EKQEKQ EKTAENKRKRD
Sbjct: 256 KSKKKKQDTPFPPPQQPSMEDIQLETGEYFLSDKKKQAKKWHEKQEKQLEKTAENKRKRD 315
Query: 241 AAFIPP-EEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEK 299
AAF+PP E+PS D DVAAMA SLK+KAK+ KQK EN+NPE+YIA SGE+
Sbjct: 316 AAFVPPKEDPS-----TYADNNKDVAAMAMSLKKKAKEFGKQKSFENVNPEDYIATSGEQ 370
Query: 300 PSKKK 304
P KKK
Sbjct: 371 PRKKK 375
>gi|225429319|ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis
vinifera]
Length = 386
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/299 (82%), Positives = 271/299 (90%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+GALKE+GV ELNLVEG MTVSTTRKTRDPYII+KARDLI+LLSRSVPAPQAIKIL+D
Sbjct: 75 VRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILND 134
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
EMQCDIIKIG+LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG
Sbjct: 135 EMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 194
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQVRR+VEDC+QNKMHPVYHIK LM+K+EL DPAL NENWDRFLPKFKKKNVKQKKVK
Sbjct: 195 LKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVK 254
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
SKEKKPYTPFPPP PSK+D LESGEYFLS++KK +KKWQ+K EKQAEKTAENKRKR+A
Sbjct: 255 SKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREA 314
Query: 242 AFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
AF+PP EP Q+ ++ D NDVAAMA SLK+KAK+ KQK EN+NPE YIAASGE P
Sbjct: 315 AFVPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGEAP 373
>gi|296083097|emb|CBI22501.3| unnamed protein product [Vitis vinifera]
Length = 424
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/299 (82%), Positives = 271/299 (90%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+GALKE+GV ELNLVEG MTVSTTRKTRDPYII+KARDLI+LLSRSVPAPQAIKIL+D
Sbjct: 113 VRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILND 172
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
EMQCDIIKIG+LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG
Sbjct: 173 EMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 232
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQVRR+VEDC+QNKMHPVYHIK LM+K+EL DPAL NENWDRFLPKFKKKNVKQKKVK
Sbjct: 233 LKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVK 292
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
SKEKKPYTPFPPP PSK+D LESGEYFLS++KK +KKWQ+K EKQAEKTAENKRKR+A
Sbjct: 293 SKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREA 352
Query: 242 AFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
AF+PP EP Q+ ++ D NDVAAMA SLK+KAK+ KQK EN+NPE YIAASGE P
Sbjct: 353 AFVPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGEAP 411
>gi|449444252|ref|XP_004139889.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 350
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/307 (79%), Positives = 275/307 (89%), Gaps = 1/307 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK ALKE+G+ ELNL+EGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKILD
Sbjct: 42 VVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILD 101
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEMQCDIIKIGNLVR KERFVKRR+ LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK
Sbjct: 102 DEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 161
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRR+VE+CM NKMHPVY+IKILM++KEL DPALANENWDRFLPKFKKK VKQKKV
Sbjct: 162 GLKQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLPKFKKKTVKQKKV 221
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KSK KK YTPFPPP QPS+ID LE+GEYFL+E+KK +KKWQ+KQEKQAEKTA+NKRKR+
Sbjct: 222 KSKPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAEKTADNKRKRE 281
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
AAF+PP+E +Q++ DK ND+A MAKSLKEKAK K+K AE INPE YIA+S ++P
Sbjct: 282 AAFVPPKEAPKQDTKPDGDK-NDIAEMAKSLKEKAKAFGKRKAAETINPEAYIASSSDRP 340
Query: 301 SKKKKSK 307
KK+SK
Sbjct: 341 LFKKRSK 347
>gi|449493026|ref|XP_004159171.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 379
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/307 (79%), Positives = 275/307 (89%), Gaps = 1/307 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK ALKE+G+ ELNL+EGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKILD
Sbjct: 71 VVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILD 130
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEMQCDIIKIGNLVR KERFVKRR+ LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK
Sbjct: 131 DEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 190
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRR+VE+CM NKMHPVY+IKILM++KEL DPALANENWDRFLPKFKKK VKQKKV
Sbjct: 191 GLKQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLPKFKKKTVKQKKV 250
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KSK KK YTPFPPP QPS+ID LE+GEYFL+E+KK +KKWQ+KQEKQAEKTA+NKRKR+
Sbjct: 251 KSKPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAEKTADNKRKRE 310
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 300
AAF+PP+E +Q++ DK ND+A MAKSLKEKAK K+K AE INPE YIA+S ++P
Sbjct: 311 AAFVPPKEAPKQDTKPDGDK-NDIAEMAKSLKEKAKAFGKRKAAETINPEAYIASSSDRP 369
Query: 301 SKKKKSK 307
KK+SK
Sbjct: 370 LFKKRSK 376
>gi|218184655|gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indica Group]
Length = 395
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/303 (73%), Positives = 267/303 (88%), Gaps = 3/303 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VKGALKE+GV+CELNLVEGSMTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+
Sbjct: 83 IVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILN 142
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEM CDIIKIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGS+K
Sbjct: 143 DEMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWK 202
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRR+VEDC++N HPVYHIK L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK
Sbjct: 203 GLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKP 262
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+
Sbjct: 263 ITKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKRE 322
Query: 241 AAFIPPEEPSRQ--NSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-G 297
AAF+PP+E + S ++ +++A MAKSLK+KAK+LRK + EN+ E Y+A++ G
Sbjct: 323 AAFVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKELRKSEAQENVRLESYVASNEG 382
Query: 298 EKP 300
+P
Sbjct: 383 SRP 385
>gi|115482288|ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|31432429|gb|AAP54059.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|215687236|dbj|BAG91801.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612935|gb|EEE51067.1| hypothetical protein OsJ_31745 [Oryza sativa Japonica Group]
Length = 395
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/303 (72%), Positives = 266/303 (87%), Gaps = 3/303 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VKGALKE+GV+CELNLVEGSMTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+
Sbjct: 83 IVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILN 142
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEM CDIIKIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGS+K
Sbjct: 143 DEMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWK 202
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRR+VEDC++N HPVYHIK L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK
Sbjct: 203 GLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKP 262
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+
Sbjct: 263 ITKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKRE 322
Query: 241 AAFIPPEEPSRQ--NSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-G 297
AAF+PP+E + S ++ +++A MAKSLK+KAK+ RK + EN+ E Y+A++ G
Sbjct: 323 AAFVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVASNEG 382
Query: 298 EKP 300
+P
Sbjct: 383 SRP 385
>gi|357136153|ref|XP_003569670.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 393
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/299 (72%), Positives = 255/299 (85%), Gaps = 2/299 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VKGALKE+G++CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIK+L+D
Sbjct: 83 VKGALKEFGITCELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKVLND 142
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
EM CDI+KIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGSFKG
Sbjct: 143 EMNCDIVKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSFKG 202
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQVRRIVEDC++N HPVYHIK L++K+EL K+PALA E+WDRFLP FKKKNVKQKK
Sbjct: 203 LKQVRRIVEDCIKNIKHPVYHIKELLIKRELAKNPALATESWDRFLPNFKKKNVKQKKPN 262
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
+KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK +KQ+EK E KRKR+A
Sbjct: 263 TKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLDKQSEKMEEKKRKREA 322
Query: 242 AFIPPEEPSR--QNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGE 298
AF+PP+E S S + N++A + KSLK KAKK R + EN+ + YIA + E
Sbjct: 323 AFVPPKENSAGPSESAKPTHAKNEIADITKSLKNKAKKFRNSEAQENVKVDSYIATNEE 381
>gi|414880761|tpg|DAA57892.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 391
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/304 (72%), Positives = 264/304 (86%), Gaps = 8/304 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VKGALKEYG+SCELNLVEGSMTVSTTRKTRDP+ I+KAR+LI+LLSRSVPAPQAIKILD
Sbjct: 77 VVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFAIIKARELIKLLSRSVPAPQAIKILD 136
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEM CDIIKIG LVRNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMG+++
Sbjct: 137 DEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYR 196
Query: 121 G--LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 178
G LKQVRRIVEDCM+N HPVYHIK L++K+EL K+PALANENWDRFLPKFKKKNVKQK
Sbjct: 197 GRGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALANENWDRFLPKFKKKNVKQK 256
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K ++KEKKPYTPFPPP QPSKID LE+GEYF+S++KK +KKWQEK +KQ+ + ENKRK
Sbjct: 257 KPQTKEKKPYTPFPPPQQPSKIDLELENGEYFMSDKKKSAKKWQEKLDKQSGRAEENKRK 316
Query: 239 RDAAFIPPEE----PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIA 294
R+AAF+PP+E PS+ + +++ +++A +AKSLK KAK+ RK + E++ E YIA
Sbjct: 317 REAAFVPPKENTAGPSKSDKNASDN--SEIADIAKSLKRKAKEFRKNEAQESVIAESYIA 374
Query: 295 ASGE 298
++ E
Sbjct: 375 SNDE 378
>gi|297806883|ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
gi|297317162|gb|EFH47584.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
Length = 391
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 241/311 (77%), Positives = 271/311 (87%), Gaps = 5/311 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ ALKEYGV+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+D
Sbjct: 78 VESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILED 137
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
EMQCDIIKIG+LVRNK+RFVKRRQ LVGPNSSTLKALEILT CYILVQG+TVAAMG FKG
Sbjct: 138 EMQCDIIKIGSLVRNKQRFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKG 197
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQ+RRIVEDC+QNKMHPVYHIK LM+KKELEKDPALANE+WDRFLP F+KKNVKQKK K
Sbjct: 198 LKQLRRIVEDCVQNKMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPK 257
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
SKEKKPYTPFPPP PSKID LESGEYF+S++KK KKW EKQEKQ EK+ ENKRKRDA
Sbjct: 258 SKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWLEKQEKQTEKSTENKRKRDA 317
Query: 242 AFIPPEEPSRQNS--CEAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPEEYIA--AS 296
+F+PPEEP NS +ED ND+ + +SLK K K+L+KQK E +N EEYIA +S
Sbjct: 318 SFLPPEEPMNNNSKANNSEDGKNDITELTQSLKSKTKELKKQKKTHERVNAEEYIAGPSS 377
Query: 297 GEKPSKKKKSK 307
+KP+K+K K
Sbjct: 378 IDKPAKEKSKK 388
>gi|15241622|ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|13878039|gb|AAK44097.1|AF370282_1 putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|10178284|emb|CAC08342.1| rev interacting protein mis3-like [Arabidopsis thaliana]
gi|23296614|gb|AAN13132.1| putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|332003916|gb|AED91299.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 391
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 236/297 (79%), Positives = 262/297 (88%), Gaps = 3/297 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ ALKEYGV+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+D
Sbjct: 78 VESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILED 137
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+QCDIIKIGNLVRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQG+TVAAMG FKG
Sbjct: 138 EVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKG 197
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQ+RRIVEDC+QN MHPVYHIK LM+KKELEKDPALANE+WDRFLP F+KKNVKQKK K
Sbjct: 198 LKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPK 257
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
SKEKKPYTPFPPP PSKID LESGEYF+S++KK KKWQEKQEKQ+EK+ ENKRKRDA
Sbjct: 258 SKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDA 317
Query: 242 AFIPPEEPSRQNS--CEAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPEEYIAA 295
+F+PPEEP NS ++ED ND+ + SLK K K+L+KQK E +N EEYIA
Sbjct: 318 SFLPPEEPMNNNSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374
>gi|21592614|gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis thaliana]
Length = 391
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 235/297 (79%), Positives = 261/297 (87%), Gaps = 3/297 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ ALKEYGV+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+D
Sbjct: 78 VESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILED 137
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+QCDIIKIGNLVRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQG+TVAAMG FKG
Sbjct: 138 EVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKG 197
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQ+RRIVEDC+QN MHPVYHIK LM+KKELEKDPALANE+WDRFLP F+KKNVKQKK K
Sbjct: 198 LKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPK 257
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
SKEKKPYTPFPPP PSKID LESGEYF+ ++KK KKWQEKQEKQ+EK+ ENKRKRDA
Sbjct: 258 SKEKKPYTPFPPPQPPSKIDMQLESGEYFMRDKKKSEKKWQEKQEKQSEKSTENKRKRDA 317
Query: 242 AFIPPEEPSRQNS--CEAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPEEYIAA 295
+F+PPEEP NS ++ED ND+ + SLK K K+L+KQK E +N EEYIA
Sbjct: 318 SFLPPEEPMNNNSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374
>gi|56785318|dbj|BAD82278.1| rev protein (42.9 kD)-like [Oryza sativa Japonica Group]
gi|125571797|gb|EAZ13312.1| hypothetical protein OsJ_03235 [Oryza sativa Japonica Group]
Length = 421
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/308 (68%), Positives = 259/308 (84%), Gaps = 3/308 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPYII+KA +LI+LLSRSVPAPQAIKIL+
Sbjct: 106 IVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQAIKILN 165
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEM C IIKIG+++RNKERFVKRR L+GPN STLKA+EILTGCYILVQGNT AAMG +K
Sbjct: 166 DEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWK 225
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQV R+VEDC++N HPVYHIK L++K+EL K+PALA+E+WD+FLPKFKKKNVKQKK
Sbjct: 226 GLKQVVRVVEDCIKNVKHPVYHIKELLIKRELVKNPALAHESWDKFLPKFKKKNVKQKKP 285
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+KEKK YTPFPPP QPSKID LESGE F+S++KK +K+WQEK EKQ++K ENKRKR+
Sbjct: 286 LTKEKKQYTPFPPPQQPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQKAEENKRKRE 345
Query: 241 AAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-G 297
AAF+ P E + S ++ ++A MAKSLK+KAK+LRK + EN+ E Y+A++ G
Sbjct: 346 AAFVHPNEDIATPYESAKSIINNGEIADMAKSLKKKAKELRKNEEQENVRLESYVASNEG 405
Query: 298 EKPSKKKK 305
+P KK K
Sbjct: 406 SRPKKKHK 413
>gi|125527474|gb|EAY75588.1| hypothetical protein OsI_03494 [Oryza sativa Indica Group]
Length = 421
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/308 (68%), Positives = 258/308 (83%), Gaps = 3/308 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPYII+KA +LI+LLSRSVPAPQAIKIL+
Sbjct: 106 IVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQAIKILN 165
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEM C IIKIG+++RNKERFVKRR L+GPN STLKA+EILTGCYILVQGNT AAMG +K
Sbjct: 166 DEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWK 225
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQV R+VEDC++N HPVYHIK L++K+EL K+PALA+E+WD+FLPKFKKKNVKQKK
Sbjct: 226 GLKQVVRVVEDCIKNVKHPVYHIKELLIKRELAKNPALAHESWDKFLPKFKKKNVKQKKP 285
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+KEKK YTPFPPP QPSKID LESGE F+S++KK +K+WQEK EKQ++K ENKRKR+
Sbjct: 286 LTKEKKQYTPFPPPQQPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQKAEENKRKRE 345
Query: 241 AAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-G 297
AAF+ P E + S ++ ++A M KSLK+KAK+LRK + EN+ E Y+A++ G
Sbjct: 346 AAFVHPNEDIATPYESAKSIINNGEIADMEKSLKKKAKELRKNEEQENVRLESYVASNEG 405
Query: 298 EKPSKKKK 305
+P KK K
Sbjct: 406 SRPKKKHK 413
>gi|110289174|gb|ABG66110.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
Length = 292
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/282 (71%), Positives = 245/282 (86%), Gaps = 3/282 (1%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
MTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+DEM CDIIKIG+++RNKERFV
Sbjct: 1 MTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNKERFV 60
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 141
KRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGS+KGLKQVRR+VEDC++N HPVY
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGLKQVRRVVEDCIKNIKHPVY 120
Query: 142 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKID 201
HIK L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK +KEKKPYTPFPPP QPSKID
Sbjct: 121 HIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPITKEKKPYTPFPPPQQPSKID 180
Query: 202 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ--NSCEAED 259
LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+AAF+PP+E + S ++
Sbjct: 181 LELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAAFVPPKEDTATPYESAKSTS 240
Query: 260 KTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-GEKP 300
+++A MAKSLK+KAK+ RK + EN+ E Y+A++ G +P
Sbjct: 241 NNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVASNEGSRP 282
>gi|297720351|ref|NP_001172537.1| Os01g0713700 [Oryza sativa Japonica Group]
gi|255673619|dbj|BAH91267.1| Os01g0713700 [Oryza sativa Japonica Group]
Length = 461
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/288 (70%), Positives = 246/288 (85%), Gaps = 2/288 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPYII+KA +LI+LLSRSVPAPQAIKIL+
Sbjct: 106 IVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQAIKILN 165
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DEM C IIKIG+++RNKERFVKRR L+GPN STLKA+EILTGCYILVQGNT AAMG +K
Sbjct: 166 DEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWK 225
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQV R+VEDC++N HPVYHIK L++K+EL K+PALA+E+WD+FLPKFKKKNVKQKK
Sbjct: 226 GLKQVVRVVEDCIKNVKHPVYHIKELLIKRELVKNPALAHESWDKFLPKFKKKNVKQKKP 285
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+KEKK YTPFPPP QPSKID LESGE F+S++KK +K+WQEK EKQ++K ENKRKR+
Sbjct: 286 LTKEKKQYTPFPPPQQPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQKAEENKRKRE 345
Query: 241 AAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAEN 286
AAF+ P E + S ++ ++A MAKSLK+KAK+LRK + EN
Sbjct: 346 AAFVHPNEDIATPYESAKSIINNGEIADMAKSLKKKAKELRKNEEQEN 393
>gi|302795356|ref|XP_002979441.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
gi|300152689|gb|EFJ19330.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
Length = 373
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/296 (68%), Positives = 247/296 (83%), Gaps = 6/296 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V ALKE+G+ ELNLVEGSMTV+TTRK +DPYII+KARDLI+LL+RSVPAPQA+KIL+D
Sbjct: 81 VARALKEHGIKGELNLVEGSMTVTTTRKVQDPYIIIKARDLIKLLARSVPAPQALKILED 140
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
MQCDIIKIGNL+RNK+RFVKRRQ L+GPN +TLKALE+LTGCYILVQGNTVAAMG F+G
Sbjct: 141 YMQCDIIKIGNLIRNKDRFVKRRQRLLGPNGATLKALELLTGCYILVQGNTVAAMGPFQG 200
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK +RR+VEDC+ N +HP+YHIK LM+K+EL KDPALANENW+RFLPKFKKKNV Q+K
Sbjct: 201 LKTLRRVVEDCIHN-IHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNV-QRKKS 258
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
KEKKPYTPFPPP QPSKID LESGEYFLS K +KK++EK+++Q EK AENKRKRD+
Sbjct: 259 KKEKKPYTPFPPPQQPSKIDLQLESGEYFLSAETKAAKKFEEKKQQQLEKAAENKRKRDS 318
Query: 242 AFIPPEEPSRQNSCEAEDKTN--DVAAMAKSLKEKAKK-LRKQKFAENINPEEYIA 294
+F+PP+E + + DV AMA++LKEK++K L KQK ++ + + Y+A
Sbjct: 319 SFVPPKETKKSERAGTSSGVSKADVTAMAQNLKEKSEKVLPKQKRIDD-SVQNYLA 373
>gi|242054199|ref|XP_002456245.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
gi|241928220|gb|EES01365.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
Length = 351
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/246 (79%), Positives = 224/246 (91%), Gaps = 2/246 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VKGALKEYG+SCELNLVEGSMTVSTTRKTRDP+IIVKAR+LI+LLSRSVPAPQAIKILD
Sbjct: 84 LVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFIIVKARELIKLLSRSVPAPQAIKILD 143
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF- 119
DEM CDIIKIG LVRNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMG++
Sbjct: 144 DEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYR 203
Query: 120 -KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 178
+GLKQVRRIVEDCM+N HPVYHIK L++K+EL K+PALA E+WDRFLPKFKKKNVKQK
Sbjct: 204 GRGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALATESWDRFLPKFKKKNVKQK 263
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K ++KEKKPYTPFPPP QPSKID LE+GEYF+S++KK +KKWQEK EKQ+ + ENKRK
Sbjct: 264 KPQTKEKKPYTPFPPPQQPSKIDLELENGEYFMSDKKKSAKKWQEKLEKQSGRAEENKRK 323
Query: 239 RDAAFI 244
R+ F+
Sbjct: 324 RETFFV 329
>gi|414880760|tpg|DAA57891.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 294
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/283 (70%), Positives = 243/283 (85%), Gaps = 8/283 (2%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
MTVSTTRKTRDP+ I+KAR+LI+LLSRSVPAPQAIKILDDEM CDIIKIG LVRNKERFV
Sbjct: 1 MTVSTTRKTRDPFAIIKARELIKLLSRSVPAPQAIKILDDEMNCDIIKIGGLVRNKERFV 60
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG--LKQVRRIVEDCMQNKMHP 139
KRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMG+++G LKQVRRIVEDCM+N HP
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYRGRGLKQVRRIVEDCMKNVKHP 120
Query: 140 VYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 199
VYHIK L++K+EL K+PALANENWDRFLPKFKKKNVKQKK ++KEKKPYTPFPPP QPSK
Sbjct: 121 VYHIKELLIKRELAKNPALANENWDRFLPKFKKKNVKQKKPQTKEKKPYTPFPPPQQPSK 180
Query: 200 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE----PSRQNSC 255
ID LE+GEYF+S++KK +KKWQEK +KQ+ + ENKRKR+AAF+PP+E PS+ +
Sbjct: 181 IDLELENGEYFMSDKKKSAKKWQEKLDKQSGRAEENKRKREAAFVPPKENTAGPSKSDKN 240
Query: 256 EAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGE 298
+++ +++A +AKSLK KAK+ RK + E++ E YIA++ E
Sbjct: 241 ASDN--SEIADIAKSLKRKAKEFRKNEAQESVIAESYIASNDE 281
>gi|302792240|ref|XP_002977886.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
gi|300154589|gb|EFJ21224.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
Length = 347
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/245 (75%), Positives = 218/245 (88%), Gaps = 2/245 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V ALKE+G+ ELNLVEGSMTVSTTRK +DPYII+KARDLI+LL+RSVPAPQA+KIL+D
Sbjct: 81 VARALKEHGIKGELNLVEGSMTVSTTRKVQDPYIIIKARDLIKLLARSVPAPQALKILED 140
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
MQCDIIKIGNL+RNK+RFVKRRQ L+GPN +TLKALE+LTGCYILVQGNTVAAMG F+G
Sbjct: 141 YMQCDIIKIGNLIRNKDRFVKRRQRLLGPNGATLKALELLTGCYILVQGNTVAAMGPFQG 200
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK +RR+VEDC+ N +HP+YHIK LM+K+EL KDPALANENW+RFLPKFKKKNV Q+K
Sbjct: 201 LKTLRRVVEDCIHN-IHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNV-QRKKS 258
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
KEKKPYTPFPPP QPSKID LESGEYFLS K +KK++EK+++Q EK AENKRKRD+
Sbjct: 259 KKEKKPYTPFPPPQQPSKIDLQLESGEYFLSAETKAAKKFEEKKQQQLEKAAENKRKRDS 318
Query: 242 AFIPP 246
+F+PP
Sbjct: 319 SFVPP 323
>gi|308806503|ref|XP_003080563.1| rRNA processing protein (ISS) [Ostreococcus tauri]
gi|116059023|emb|CAL54730.1| rRNA processing protein (ISS) [Ostreococcus tauri]
Length = 419
Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 230/308 (74%), Gaps = 9/308 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V ALKE GVSCELNLVEGSMTV TTRKT DPYIIVKARDLI+LLSRSVPAPQA+K+LDD
Sbjct: 98 VTRALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIVKARDLIKLLSRSVPAPQALKVLDD 157
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CD+IKIG +VRNKERFVKRRQ L+GPN STLKA+E+LTGCY+LVQGNTV+ MG +KG
Sbjct: 158 DTNCDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSVMGGWKG 217
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VR+IVED M+N HP+YHIK LM+K+ELEKDP LA ++WDRFLPKFKKKNV++KK +
Sbjct: 218 LKTVRKIVEDAMKN-THPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNVQRKKPQ 276
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
KK FPP SK+D +ESGEYFLS+ KE K +K +KQ + EN++KR
Sbjct: 277 KVGKKERAVFPPAQPMSKVDMQIESGEYFLSKEAKERKAAYDKLQKQKNVSTENQKKRLE 336
Query: 242 AFIPPEE---PSRQNSCEA-EDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASG 297
AF+ P+E P R + EA E+ NDVAA SLK K+ K RK++ + + G
Sbjct: 337 AFVAPKEEDKPVRTSKSEAKEEDVNDVAA---SLKAKS-KTRKEEEKRSKSSASAFVMGG 392
Query: 298 EKPSKKKK 305
K SK KK
Sbjct: 393 VKESKSKK 400
>gi|145348735|ref|XP_001418799.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579029|gb|ABO97092.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/273 (65%), Positives = 214/273 (78%), Gaps = 6/273 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V ALKE GVSCELNLVEGSMTV TTRKT DPYII+KARDLI+LLSRSVPAPQA+K+L+D
Sbjct: 97 VTKALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIMKARDLIKLLSRSVPAPQALKVLED 156
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E CD+IKIG +VRNKERFVKRRQ L+GPN STLKA+E+LTGCY+LVQGNTV+ MG +KG
Sbjct: 157 ETNCDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSVMGGWKG 216
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VR+IVED M+N HP+YHIK LM+K+ELEKDP LA ++WDRFLPKFKKKNV++KK
Sbjct: 217 LKMVRKIVEDAMKN-THPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNVQRKKPA 275
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
KK FPP SKIDK +ESGEYFLS+ KE K +K +KQ + + +N +KR A
Sbjct: 276 KIGKKERAVFPPTQPMSKIDKQIESGEYFLSKEAKERKAAYDKLQKQKDTSTDNHKKRQA 335
Query: 242 AFIPPEE---PSRQNSCEAEDKTNDVAAMAKSL 271
AF+ P+E P+R S +A K DV A+ SL
Sbjct: 336 AFVAPKEDDKPARSKSSKA--KEEDVDAITASL 366
>gi|255080030|ref|XP_002503595.1| predicted protein [Micromonas sp. RCC299]
gi|226518862|gb|ACO64853.1| predicted protein [Micromonas sp. RCC299]
Length = 398
Score = 353 bits (905), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 176/280 (62%), Positives = 219/280 (78%), Gaps = 7/280 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V ALKE G++CELNLVEGSMTV TTRKT DPYII+K+RDLI+LLSRSVPAPQA+KIL D
Sbjct: 82 VTRALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSVPAPQALKILQD 141
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++QCD+IKIG +VRNKER+VKRRQ L+GPN STLKA+E+LT CY+LVQGNTV+ MG +KG
Sbjct: 142 DVQCDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTNCYVLVQGNTVSCMGGWKG 201
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-V 180
LK VR+I+EDCM+N MHP+YHIK LM+K+EL KDPALA+++WDRFLPKFKKKNV++KK
Sbjct: 202 LKMVRKIIEDCMRN-MHPIYHIKELMIKRELAKDPALADQSWDRFLPKFKKKNVQRKKPA 260
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K + K FPP PQPSKID +ESGEYFLS+ K + QEK +KQ E + ++++R
Sbjct: 261 KIGKGKKDQVFPPAPQPSKIDMQIESGEYFLSQEAKRRRAAQEKLDKQKEALSASQKRRR 320
Query: 241 AAFIPPEEPSRQNSCEAEDK-----TNDVAAMAKSLKEKA 275
AFI P+E ++ A K +DV A LKEK+
Sbjct: 321 DAFIAPKEDGPEDGDAARKKKREVSADDVKASVAKLKEKS 360
>gi|384253358|gb|EIE26833.1| hypothetical protein COCSUDRAFT_21918 [Coccomyxa subellipsoidea
C-169]
Length = 392
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 187/296 (63%), Positives = 235/296 (79%), Gaps = 2/296 (0%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
ALKE G+ CELNLVEGSMTV TTRKT DPYII+KARDL++LL+RSVP PQA+K+L+D+MQ
Sbjct: 82 ALKEVGIGCELNLVEGSMTVRTTRKTWDPYIIMKARDLLKLLARSVPYPQAVKVLNDDMQ 141
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CDIIKIG LVRNKE+FVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+AMG F+GLKQ
Sbjct: 142 CDIIKIGGLVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQGNTVSAMGPFQGLKQ 201
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 184
VRR+VEDC++N +HP+YHIK LM+K+EL KDPAL ENW+RFLPKFKKKNVK+KK +
Sbjct: 202 VRRVVEDCIKN-VHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKKPVVTK 260
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 244
KK YTPFPPP QP K D LESGEYFL++++K +K +Q +QAE+ AE KR+R AF+
Sbjct: 261 KKDYTPFPPPQQPRKEDLELESGEYFLAQQEKAKRKKAVEQAQQAERVAEKKRRRQDAFV 320
Query: 245 PPE-EPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEK 299
PP+ P++ E D+A M +SLK+KAKK K+ + ++++A E+
Sbjct: 321 PPQASPAQPVVQEVRSANADLAEMTQSLKKKAKKSLKRDHGDEGGLDQFLAVPSEQ 376
>gi|443897833|dbj|GAC75172.1| rRNA processing protein [Pseudozyma antarctica T-34]
Length = 461
Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 166/256 (64%), Positives = 205/256 (80%), Gaps = 8/256 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++G++C L+LVEGSMTV TTRK DPYII+KARD+IRLLSRSVP PQA+KIL+D
Sbjct: 158 VTSALDKHGIACTLDLVEGSMTVKTTRKAYDPYIILKARDMIRLLSRSVPFPQAVKILED 217
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++CD+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LTGCY+LVQGNTV+AMG FK
Sbjct: 218 GIECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGPFKS 277
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRIV DC++N +HP+YHIK LM+K+EL KDP LA ENW+RFLPKFKK+NVK KK
Sbjct: 278 LKEVRRIVIDCLKN-VHPIYHIKELMIKRELAKDPKLAEENWERFLPKFKKRNVKPKKSA 336
Query: 182 SKEK-------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 234
E+ K YTPFPPP QPSKID LESGEYFL R+K+ + Q+K Q E+ +
Sbjct: 337 EGEQKKEKIKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRQKKHAEEQKKIAHQQEQKEK 396
Query: 235 NKRKRDAAFIPPEEPS 250
+ +R AF+PP EP+
Sbjct: 397 REAERQKAFVPPTEPA 412
>gi|223998947|ref|XP_002289146.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
gi|220974354|gb|EED92683.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
Length = 412
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/294 (58%), Positives = 217/294 (73%), Gaps = 19/294 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L +Y V+CELNLVEGSMTV TT+KT DPYII+KARDLI+LL+RS+PAPQA+KIL+
Sbjct: 84 LVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPYIILKARDLIKLLARSIPAPQALKILN 143
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ C+IIKIG LVRNKERFVKRRQ L+GP+ +TLKALE+LT CYILVQGNTV+ MG++K
Sbjct: 144 DDHHCEIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNTVSVMGTYK 203
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
G+KQ R ++ DCM N +HPVY+IK LM+ +ELE+DP L E+W+RFLP FKKKNVK++K
Sbjct: 204 GIKQTRNVILDCMNN-IHPVYNIKRLMIMRELERDPKLKEESWERFLPTFKKKNVKRRKP 262
Query: 181 KS-KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K+KK YTPFPP QPSKID LESGEYFLSER++++KK EK+ EKT E +R R
Sbjct: 263 HQLKKKKSYTPFPPAQQPSKIDLQLESGEYFLSERERKAKKLGEKKIASMEKTEEKRRAR 322
Query: 240 DAAFIPPE-----------------EPSRQNSCEAEDKTNDVAAMAKSLKEKAK 276
+ F+ P E +R+ S D +DV +AK +K K
Sbjct: 323 ELEFVHPSKFEEASVGGGTAAGAVVEANRKGSESGVDAKDDVDRLAKKFAKKRK 376
>gi|412992272|emb|CCO19985.1| ribosomal RNA assembly protein mis3 [Bathycoccus prasinos]
Length = 390
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 176/245 (71%), Positives = 206/245 (84%), Gaps = 2/245 (0%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
ALK+ GV CELNLVEGSMTV TTRKT DPYII+KARDLI+LLSRSVPAPQA+K+L D+ Q
Sbjct: 82 ALKDVGVGCELNLVEGSMTVRTTRKTWDPYIIIKARDLIKLLSRSVPAPQALKVLSDDTQ 141
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CD+IKIG LVRNKERFVKRRQ LVGPN STLKA+E+LT CY+L+QGNTV+AMGSFKGLK
Sbjct: 142 CDVIKIGGLVRNKERFVKRRQRLVGPNGSTLKAIEMLTDCYVLIQGNTVSAMGSFKGLKT 201
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS-K 183
R+IVED M+N +HP+YHIK LM+K+ELEKDP L N++WDRFLPKFKKKNVK+KK + K
Sbjct: 202 CRKIVEDAMKN-VHPIYHIKELMIKRELEKDPELKNQSWDRFLPKFKKKNVKRKKPEYVK 260
Query: 184 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 243
EKK + FPP PSKID +ESGEYFLS+ K+ KK QEK EKQ E +NKR+R+ AF
Sbjct: 261 EKKARSVFPPAQMPSKIDLQIESGEYFLSQEAKQMKKAQEKLEKQKEGIEKNKRRREEAF 320
Query: 244 IPPEE 248
I P+E
Sbjct: 321 IAPKE 325
>gi|254584874|ref|XP_002498005.1| 90S preribosome/SSU processome component KRR1 [Zygosaccharomyces
rouxii CBS 732]
gi|186928977|emb|CAQ43302.1| Ribosomal RNA assembly protein KRR1 [Zygosaccharomyces rouxii]
gi|238940898|emb|CAR29072.1| ZYRO0F18458p [Zygosaccharomyces rouxii]
Length = 314
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 167/255 (65%), Positives = 205/255 (80%), Gaps = 3/255 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +Y V+C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D
Sbjct: 60 VTKALNKYHVACVLDLVEGSMTVKTTRKTCDPAIILKARDLIKLLARSVPFPQAVKILED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
CD+IKIGN V NKERF KRRQ LVGPN +TLKALE+LT CYILVQGNTVAAMG++KG
Sbjct: 120 NTACDVIKIGNTVANKERFQKRRQRLVGPNGNTLKALELLTKCYILVQGNTVAAMGNYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VED M+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK
Sbjct: 180 LKEVRRVVEDTMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPNFKKRNVARKKPM 238
Query: 182 S--KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
KEKK YTPFPP P K+D +ESGEYFL++R+KE+KK +E++EKQAEK E +++R
Sbjct: 239 KIRKEKKVYTPFPPAQTPRKVDLEIESGEYFLNKREKEAKKLEERREKQAEKQEERQKER 298
Query: 240 DAAFIPPEEPSRQNS 254
F+PP+E + S
Sbjct: 299 RKDFLPPKEEDYKKS 313
>gi|388854361|emb|CCF51945.1| probable KRR1-required for 40S ribosome biogenesis [Ustilago
hordei]
Length = 377
Score = 333 bits (854), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/271 (60%), Positives = 205/271 (75%), Gaps = 25/271 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++G++C L+LVEGSMTV TTRKT DPYII+KARD+IRLLSRSVP PQA+KIL+D
Sbjct: 73 VTSALEKHGIACTLDLVEGSMTVKTTRKTYDPYIILKARDMIRLLSRSVPFPQAVKILED 132
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++CD+IKIG+L+RNKERFVKRRQ ++GPN STLKA+E+LTGCY+LVQGNTV+AMG FK
Sbjct: 133 GVECDVIKIGHLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGHFKA 192
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRIV DC++N +HP+YHIK LM+K+EL KDP LA ENWDRFLPKFKK+NVK K
Sbjct: 193 LKEVRRIVIDCLKN-IHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKRNVKSKPAS 251
Query: 182 S------------------------KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKE 217
+ +KK YTPFPPP QPSKID LESGEYFL R+K+
Sbjct: 252 TTTDSANGVATGANAVGEGSSKKKEIKKKTYTPFPPPQQPSKIDLQLESGEYFLKPREKK 311
Query: 218 SKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
+ + K +KQAE + + +R F+PP E
Sbjct: 312 RAEEERKLKKQAEHKEKREAERQKMFVPPTE 342
>gi|168031539|ref|XP_001768278.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680456|gb|EDQ66892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 345
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 179/247 (72%), Positives = 216/247 (87%), Gaps = 2/247 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ ALKE+G+ L+LV+GSMTVSTTRKTRDPYII+KARDL++LLSRSVPAPQA+KIL+
Sbjct: 84 VITQALKEHGIKAVLDLVKGSMTVSTTRKTRDPYIIMKARDLMKLLSRSVPAPQALKILE 143
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+MQCDIIKIGNL+RNKERFVKRRQ L+GPN +TLKALE+LTGCY+LVQG+TV+AMG +K
Sbjct: 144 DDMQCDIIKIGNLIRNKERFVKRRQRLLGPNGATLKALELLTGCYVLVQGSTVSAMGPWK 203
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK VRR+VEDC++N +HP+YHIK LM+K+EL KDP L ++NWDRFLPKFKKKNVK KKV
Sbjct: 204 GLKAVRRVVEDCIKN-VHPIYHIKALMIKRELAKDPELKDQNWDRFLPKFKKKNVKAKKV 262
Query: 181 KSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
++K YTPFPPP QPSK+D LESGEYFLS K +KKW+ K+EKQ+EK ENKRKR
Sbjct: 263 SKDKEKKDYTPFPPPQQPSKVDLQLESGEYFLSAEMKAAKKWEAKKEKQSEKAVENKRKR 322
Query: 240 DAAFIPP 246
+AAFI P
Sbjct: 323 EAAFIAP 329
>gi|340519761|gb|EGR49999.1| hypothetical protein TRIREDRAFT_76833 [Trichoderma reesei QM6a]
Length = 320
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 201/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILD
Sbjct: 58 LITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++
Sbjct: 178 GLKELRRVVEDCMNN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ +++EKQ + +
Sbjct: 237 PLKVTDKTKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAALSDRKEKQKQAKDDRA 296
Query: 237 RKRDAAFIPPEE 248
++R A F+PPEE
Sbjct: 297 KERAAQFVPPEE 308
>gi|302895245|ref|XP_003046503.1| 90S preribosome/SSU processome component KRR1 [Nectria haematococca
mpVI 77-13-4]
gi|256727430|gb|EEU40790.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 321
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/255 (63%), Positives = 203/255 (79%), Gaps = 5/255 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKILD
Sbjct: 58 LVTKALEKTGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI +LVRNKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +K
Sbjct: 118 DGVACDIIKIRSLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++
Sbjct: 178 GLKEMRRVVEDCMAN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSRRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFL ++ KE +E++EKQ ++ +
Sbjct: 237 PLKVTDKTKKTYTPFPPAPEKSKVDMQIESGEYFLGKQGKERAAQEERKEKQKQRKEDKA 296
Query: 237 RKRDAAFIPPEEPSR 251
++R+A F+PPEE R
Sbjct: 297 KEREAEFVPPEEGGR 311
>gi|378727857|gb|EHY54316.1| ribosomal RNA assembly protein KRR1 [Exophiala dermatitidis
NIH/UT8656]
Length = 337
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/252 (63%), Positives = 200/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEG M V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL
Sbjct: 58 LVTKALEKKGIACTLDLVEGRMEVRTTRKTYDPAAILDARDLIKLLARSVPAPQALKILQ 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CD+IKI NLVRNKERFVKRRQ L+GPN STLKALE+LT YILVQGNTV+ MG +K
Sbjct: 118 DDMACDVIKIRNLVRNKERFVKRRQRLLGPNGSTLKALELLTNTYILVQGNTVSTMGGYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+YH+K LM+K+EL KDPAL NE+WDRFLP FKKK + ++
Sbjct: 178 GLKEVRRVVEDCMNN-IHPIYHVKELMIKRELAKDPALKNESWDRFLPHFKKKTLSKRHK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KPYTPFPPP + SKID +ESGEYFL+++ KE K QE+ E+Q K E +
Sbjct: 237 PFKVTDKSSKPYTPFPPPREKSKIDLQIESGEYFLAKQAKERAKEQERLERQKAKKEEKQ 296
Query: 237 RKRDAAFIPPEE 248
R+R+ AF+ P+E
Sbjct: 297 REREQAFVAPKE 308
>gi|358393418|gb|EHK42819.1| hypothetical protein TRIATDRAFT_300850 [Trichoderma atroviride IMI
206040]
Length = 320
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 201/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILD
Sbjct: 58 LITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILV GNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTETYILVHGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++
Sbjct: 178 GLKELRRVVEDCMNN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ E++EKQ E +
Sbjct: 237 PLKVTDKAKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAVLTERREKQQEAKEQRA 296
Query: 237 RKRDAAFIPPEE 248
++R A ++PPEE
Sbjct: 297 KQRAAEYVPPEE 308
>gi|302500722|ref|XP_003012354.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
gi|291175912|gb|EFE31714.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
Length = 348
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 163/254 (64%), Positives = 205/254 (80%), Gaps = 5/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FK
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++
Sbjct: 178 GLKEVRRIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE
Sbjct: 237 PFKVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKM 296
Query: 237 RKRDAAFIPPEEPS 250
++++ FIPP+E +
Sbjct: 297 KEQEKDFIPPKEDT 310
>gi|219117602|ref|XP_002179593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408646|gb|EEC48579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 379
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 168/308 (54%), Positives = 225/308 (73%), Gaps = 6/308 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V L ++GV+CELNLVEGSMTV TT++T+DPY+I+KARDL++LL+RS+P QA+KIL
Sbjct: 76 VVTRHLDQHGVACELNLVEGSMTVRTTKRTKDPYVILKARDLLKLLARSLPVAQAVKILQ 135
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG-SF 119
D+ QCDI+KIG LVRNKERFVKRRQ L+GP+ STLKALE+LTGCYILVQGNTV+ MG S+
Sbjct: 136 DDYQCDIVKIGGLVRNKERFVKRRQRLLGPDGSTLKALELLTGCYILVQGNTVSIMGDSW 195
Query: 120 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 179
KGLKQ RR+V DC++N +HPVYH+K LM++KEL KDPAL NE+W RFLP+F+KKNV+ KK
Sbjct: 196 KGLKQARRVVLDCLKN-IHPVYHLKRLMIQKELAKDPALQNEDWSRFLPQFQKKNVQTKK 254
Query: 180 VK-SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KK YTPFPP QPSKID LESGEYF +E ++++KK +++E K+ ++
Sbjct: 255 PSVRKTKKSYTPFPPAQQPSKIDLQLESGEYFATEFERKTKKVADRKEASKSKSIAKRKA 314
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGE 298
R+ P SR+ T + + + +K+K +K + + +P ++I SG
Sbjct: 315 RELEEETPVLASRKAKTTT---TKEDIPVEQRIKDKFQKAAQASQSSTSDPADFIQGSGS 371
Query: 299 KPSKKKKS 306
+ KKS
Sbjct: 372 GSKRGKKS 379
>gi|365981169|ref|XP_003667418.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
gi|343766184|emb|CCD22175.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
Length = 317
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 205/255 (80%), Gaps = 3/255 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D
Sbjct: 60 VTRALNTHNLACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+K+ YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QAEK E + +R
Sbjct: 239 KVKKEKKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEMKKLNERREQQAEKQVEKETER 298
Query: 240 DAAFIPPEEPSRQNS 254
+ ++ P EP+ ++S
Sbjct: 299 NKDYVAPSEPTYKSS 313
>gi|358385056|gb|EHK22653.1| hypothetical protein TRIVIDRAFT_179973 [Trichoderma virens Gv29-8]
Length = 320
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 158/252 (62%), Positives = 201/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++
Sbjct: 178 GLKELRRVVEDCMNN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ +++EKQ + +
Sbjct: 237 PLKVTDKAKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAALSDRKEKQKQAKDDRA 296
Query: 237 RKRDAAFIPPEE 248
++R A F+PPEE
Sbjct: 297 KERAAEFVPPEE 308
>gi|326482313|gb|EGE06323.1| ribosomal RNA assembly protein mis3 [Trichophyton equinum CBS
127.97]
Length = 348
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/254 (64%), Positives = 204/254 (80%), Gaps = 5/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FK
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++
Sbjct: 178 GLKEVRRIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE
Sbjct: 237 PFKVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKM 296
Query: 237 RKRDAAFIPPEEPS 250
+++ FIPP+E +
Sbjct: 297 KEQGKDFIPPKEDT 310
>gi|367002377|ref|XP_003685923.1| 90S preribosome/SSU processome component KRR1 [Tetrapisispora
phaffii CBS 4417]
gi|357524222|emb|CCE63489.1| hypothetical protein TPHA_0E04000 [Tetrapisispora phaffii CBS 4417]
Length = 316
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 164/257 (63%), Positives = 205/257 (79%), Gaps = 3/257 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ V+C LNLV+GSMTVSTTRKT DPYII+KARDLI+LL+RSVP PQA+KILDD
Sbjct: 60 VTKALDKHHVACTLNLVDGSMTVSTTRKTYDPYIILKARDLIKLLARSVPFPQAVKILDD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK++RR+VED M+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 180 LKEIRRVVEDAMRN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKSK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+++ YTPFPP P K+D +ESGEYFLS+++KE K+ E++++QAEK AE +R
Sbjct: 239 KPKREKKVYTPFPPSQLPRKVDLEIESGEYFLSKKEKEVKRLHERRDQQAEKQAEKDIER 298
Query: 240 DAAFIPPEEPSRQNSCE 256
+I P+E +S E
Sbjct: 299 SKNYIAPKEEKYVSSIE 315
>gi|366991194|ref|XP_003675363.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
gi|342301227|emb|CCC68994.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
Length = 327
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 167/261 (63%), Positives = 207/261 (79%), Gaps = 3/261 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALNKHNLGCVLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG F+G
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFQG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 180 LKEVRRVVEDCMKN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K+ YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QAEK AE + +R
Sbjct: 239 KVRKEKKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEMKKLHERREQQAEKQAEKEVER 298
Query: 240 DAAFIPPEEPSRQNSCEAEDK 260
+ +I PEE + ++S + E K
Sbjct: 299 NKNYIAPEEETYKSSLKKEHK 319
>gi|326476732|gb|EGE00742.1| rRNA assembly protein Mis3 [Trichophyton tonsurans CBS 112818]
Length = 348
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 163/254 (64%), Positives = 204/254 (80%), Gaps = 5/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FK
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++
Sbjct: 178 GLKEVRRIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE
Sbjct: 237 PFKVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKM 296
Query: 237 RKRDAAFIPPEEPS 250
+++ FIPP+E +
Sbjct: 297 KEQGKDFIPPKEDT 310
>gi|164660108|ref|XP_001731177.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
gi|159105077|gb|EDP43963.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
Length = 363
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 160/244 (65%), Positives = 202/244 (82%), Gaps = 2/244 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++GV+C L+LVEGSM+V TTRKT DPYII++ARDLI+LLSRSVP QA+KIL D
Sbjct: 70 VTTALEKHGVACTLDLVEGSMSVRTTRKTFDPYIILRARDLIKLLSRSVPFTQAVKILQD 129
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN+VRNKERFVKRRQ ++GPN +TLKA+E+LTGCY+LVQGNTV+AMGS+KG
Sbjct: 130 DMACDVIKIGNIVRNKERFVKRRQRIIGPNGNTLKAIELLTGCYVLVQGNTVSAMGSYKG 189
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRI+ DCM+N +HP+YHIK LM+K+EL KDP LANE+WDRFLPKFKK+NVK KK
Sbjct: 190 LKEVRRIILDCMKN-IHPIYHIKELMIKRELAKDPKLANESWDRFLPKFKKQNVKSKKPA 248
Query: 182 SKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KK YTPFPPP QPSK+D LESGEYFL +K+ + +K + QAE + +++R+
Sbjct: 249 EPPKKKIYTPFPPPQQPSKLDLQLESGEYFLKPHEKKKSEMDKKLQAQAEHAVKREKERE 308
Query: 241 AAFI 244
F+
Sbjct: 309 KQFM 312
>gi|149247984|ref|XP_001528379.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448333|gb|EDK42721.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 363
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/255 (62%), Positives = 203/255 (79%), Gaps = 4/255 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+K+L D
Sbjct: 60 VTKALDKHHIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKVLQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DIACDVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL K+P LANE+W RFLP FKK+NV +KK
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYYIKELMIKQELSKNPELANEDWSRFLPSFKKRNVARKKKT 238
Query: 182 SK---EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
SK EKK YTPFPP QP KID +ESGEYFL ++++E KK QEK+ KQ E + +++
Sbjct: 239 SKKDGEKKVYTPFPPAQQPRKIDLQIESGEYFLGKKERELKKIQEKRSKQEENSELKRQE 298
Query: 239 RDAAFIPPEEPSRQN 253
R ++ PEE +N
Sbjct: 299 RAKDYVAPEESEYEN 313
>gi|6319791|ref|NP_009872.1| Krr1p [Saccharomyces cerevisiae S288c]
gi|140400|sp|P25586.1|KRR1_YEAST RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548400|sp|B3LU25.1|KRR1_YEAS1 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548401|sp|B5VEQ2.1|KRR1_YEAS6 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548402|sp|C8Z430.1|KRR1_YEAS8 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548403|sp|E7LRT8.1|KRR1_YEASV RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548404|sp|E7QBZ1.1|KRR1_YEASZ RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|5300|emb|CAA42386.1| KRR1 [Saccharomyces cerevisiae]
gi|51013297|gb|AAT92942.1| YCL059C [Saccharomyces cerevisiae]
gi|151943775|gb|EDN62075.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406389|gb|EDV09656.1| ribosomal RNA assembly protein mis3 [Saccharomyces cerevisiae
RM11-1a]
gi|207347410|gb|EDZ73592.1| YCL059Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259144881|emb|CAY78146.1| Krr1p [Saccharomyces cerevisiae EC1118]
gi|285810642|tpg|DAA07426.1| TPA: Krr1p [Saccharomyces cerevisiae S288c]
gi|323338580|gb|EGA79798.1| Krr1p [Saccharomyces cerevisiae Vin13]
gi|323356023|gb|EGA87829.1| Krr1p [Saccharomyces cerevisiae VL3]
gi|365766811|gb|EHN08304.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 316
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/250 (66%), Positives = 202/250 (80%), Gaps = 4/250 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +
Sbjct: 239 KIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEE 298
Query: 239 RDAAFIPPEE 248
R FI PEE
Sbjct: 299 RAKDFIAPEE 308
>gi|303310074|ref|XP_003065050.1| 90S preribosome/SSU processome component KRR1 [Coccidioides
posadasii C735 delta SOWgp]
gi|240104709|gb|EER22905.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320033237|gb|EFW15186.1| ribosomal RNA assembly protein mis3 [Coccidioides posadasii str.
Silveira]
Length = 349
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 161/252 (63%), Positives = 202/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 IITRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG +K
Sbjct: 118 DGTACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRVVEDCMNN-IHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFLS+ KE + +E E+Q EK AE
Sbjct: 237 PFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKDAKERARKEEIMERQREKRAEKM 296
Query: 237 RKRDAAFIPPEE 248
++ + FIPP+E
Sbjct: 297 KEIEKDFIPPKE 308
>gi|349576691|dbj|GAA21861.1| K7_Krr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 314
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/250 (66%), Positives = 202/250 (80%), Gaps = 4/250 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +
Sbjct: 239 KIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEE 298
Query: 239 RDAAFIPPEE 248
R FI PEE
Sbjct: 299 RAKDFIAPEE 308
>gi|115384518|ref|XP_001208806.1| 90S preribosome/SSU processome component KRR1 [Aspergillus terreus
NIH2624]
gi|114196498|gb|EAU38198.1| ribosomal RNA assembly protein mis3 [Aspergillus terreus NIH2624]
Length = 360
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 201/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+
Sbjct: 58 VITRALEKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI N VRNKERFVKRRQ ++GP+ STLKALE+LTG YILVQGNTVAAMG +K
Sbjct: 118 DDVACDIIKIRNQVRNKERFVKRRQRILGPSGSTLKALELLTGTYILVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRT 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E EKQ +K E
Sbjct: 237 PFKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERARKEEVMEKQRQKREEKM 296
Query: 237 RKRDAAFIPPEE 248
++R +F+PPEE
Sbjct: 297 QERAKSFVPPEE 308
>gi|119178764|ref|XP_001241021.1| 90S preribosome/SSU processome component KRR1 [Coccidioides immitis
RS]
gi|392867014|gb|EAS29799.2| ribosomal RNA assembly protein KRR1 [Coccidioides immitis RS]
Length = 349
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 161/248 (64%), Positives = 200/248 (80%), Gaps = 5/248 (2%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D
Sbjct: 62 ALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILEDGTA 121
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG +KGLK+
Sbjct: 122 CDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPYKGLKE 181
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KV 180
VRR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 182 VRRVVEDCMNN-IHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKKPFKV 240
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KK YTPFPPP + SK+D +ESGEYFLS+ KE + +E E+Q EK AE ++ +
Sbjct: 241 TDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKDAKERARKEEIMERQREKRAEKMKEIE 300
Query: 241 AAFIPPEE 248
FIPP+E
Sbjct: 301 KDFIPPKE 308
>gi|448511533|ref|XP_003866553.1| Krr1 protein [Candida orthopsilosis Co 90-125]
gi|380350891|emb|CCG21114.1| Krr1 protein [Candida orthopsilosis Co 90-125]
Length = 364
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 159/255 (62%), Positives = 204/255 (80%), Gaps = 4/255 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALDKHFIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DIACDVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL+K+P LA+E+W RFLP FKK+NV +KKV
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVS 238
Query: 182 SK---EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K EKK YTPFPP QP K+D +ESGEYFL +R+KE KK QEK+ +Q E + +++
Sbjct: 239 KKNKAEKKVYTPFPPAQQPRKVDLQIESGEYFLGKREKELKKLQEKRAQQEENSELKRQE 298
Query: 239 RDAAFIPPEEPSRQN 253
R ++ PEE +N
Sbjct: 299 RAKDYVAPEEEDYEN 313
>gi|392300798|gb|EIW11888.1| Krr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 316
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/250 (66%), Positives = 202/250 (80%), Gaps = 4/250 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +
Sbjct: 239 KIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEE 298
Query: 239 RDAAFIPPEE 248
R F+ PEE
Sbjct: 299 RAKDFVAPEE 308
>gi|302668490|ref|XP_003025816.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
gi|291189945|gb|EFE45205.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
Length = 348
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 161/254 (63%), Positives = 204/254 (80%), Gaps = 5/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEG+MTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKSGIACTLDLVEGNMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FK
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++
Sbjct: 178 GLKEVRRIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK E
Sbjct: 237 PFKVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRVEKM 296
Query: 237 RKRDAAFIPPEEPS 250
++++ FIPP+E +
Sbjct: 297 KEQEKDFIPPKEDT 310
>gi|256270959|gb|EEU06085.1| Krr1p [Saccharomyces cerevisiae JAY291]
Length = 316
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 165/250 (66%), Positives = 201/250 (80%), Gaps = 4/250 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
LK+ RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K K
Sbjct: 180 LKEARRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +
Sbjct: 239 KIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEE 298
Query: 239 RDAAFIPPEE 248
R FI PEE
Sbjct: 299 RAKDFIAPEE 308
>gi|365761869|gb|EHN03495.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840079|gb|EJT43000.1| KRR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 316
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/256 (65%), Positives = 203/256 (79%), Gaps = 4/256 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+++ EKK YTPFPP P K+D +ESGEYFLS+R K+ KK E++EKQ E+ E + +
Sbjct: 239 KIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKRDKQVKKLNEQKEKQMERELERQEE 298
Query: 239 RDAAFIPPEEPSRQNS 254
R F PEE S + S
Sbjct: 299 RAKDFTAPEEESYKPS 314
>gi|327298894|ref|XP_003234140.1| 90S preribosome/SSU processome component KRR1 [Trichophyton rubrum
CBS 118892]
gi|326463034|gb|EGD88487.1| rRNA assembly protein Mis3 [Trichophyton rubrum CBS 118892]
Length = 347
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 162/254 (63%), Positives = 204/254 (80%), Gaps = 5/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ ++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKSCITCTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FK
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++
Sbjct: 178 GLKEVRRIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE
Sbjct: 237 PFKVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKM 296
Query: 237 RKRDAAFIPPEEPS 250
++++ FIPP+E +
Sbjct: 297 KEQEKDFIPPKEDT 310
>gi|321477353|gb|EFX88312.1| hypothetical protein DAPPUDRAFT_305506 [Daphnia pulex]
Length = 343
Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 158/279 (56%), Positives = 211/279 (75%), Gaps = 5/279 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK AL EY + EL+++EGSMTV T+RKT DPYII+KARD+++LL+RSVP QA+KIL+
Sbjct: 60 LVKKALGEYNIKAELDVIEGSMTVKTSRKTWDPYIILKARDMVKLLARSVPYEQAVKILN 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG +NK+RFVKRRQ L+GPN STLKALE+LT CYILVQGNTV+A+G ++
Sbjct: 120 DDVACDIIKIGTQTQNKDRFVKRRQRLIGPNGSTLKALELLTNCYILVQGNTVSAVGPYR 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GL+QVRR+VED M+N +HP+YHIK LM+K+EL +D L NE+W+RFLP KN ++K
Sbjct: 180 GLQQVRRVVEDTMEN-IHPIYHIKALMIKRELARDEKLKNESWERFLPTIPHKNTSKRKQ 238
Query: 180 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K + KK YTPFPP P SK+DKLL +GEYFL E +++ +K E QEKQ + K +
Sbjct: 239 PAKKRAKKEYTPFPPAPPESKVDKLLATGEYFLKEDQRKQRKKNENQEKQEQAEVRRKER 298
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKK 277
R++AFIPP+EPS + + T+D+ + LK K +K
Sbjct: 299 RESAFIPPQEPSTSSGAKEFTSTSDIN--VEELKNKIRK 335
>gi|242787818|ref|XP_002481093.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
stipitatus ATCC 10500]
gi|218721240|gb|EED20659.1| rRNA assembly protein Mis3, putative [Talaromyces stipitatus ATCC
10500]
Length = 348
Score = 326 bits (836), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/250 (64%), Positives = 198/250 (79%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ L+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LLSRSVPA QAIKIL+
Sbjct: 58 MITRTLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLSRSVPAQQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI +LV NKERFVKRRQ ++GP+ STLKALE+LTG YILVQGNTV+ MG FK
Sbjct: 118 DGVACDIIKIRSLVNNKERFVKRRQRILGPSGSTLKALELLTGTYILVQGNTVSTMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR++EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRVIEDCMAN-IHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K +K YTPFPPP + SKIDK LESGEYFLS++ KE + +E QEKQ EK E
Sbjct: 237 PHKVTDKSQKVYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRKEEIQEKQREKREEKM 296
Query: 237 RKRDAAFIPP 246
++R F+PP
Sbjct: 297 KERQKDFVPP 306
>gi|303271267|ref|XP_003054995.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462969|gb|EEH60247.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 306
Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 168/248 (67%), Positives = 207/248 (83%), Gaps = 2/248 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V ALKE G++CELNLVEGSMTV TTRKT DPYII+K+RDLI+LLSRSVPAPQA+KIL D
Sbjct: 58 VTRALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSVPAPQALKILSD 117
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++QCD+IKIG +VRNKER+VKRRQ L+GPN STLKA+E+LTGCY+LVQGNTV+ MG +KG
Sbjct: 118 DVQCDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSCMGGWKG 177
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-V 180
LK VR+I+EDCM+N MHP+YHIK LM+K+EL KDPALA+++WDRFLPKFKKKNVK+KK
Sbjct: 178 LKTVRKIIEDCMKN-MHPIYHIKELMIKRELAKDPALASQSWDRFLPKFKKKNVKRKKPS 236
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K + K FPP P PSK+D+ +ESGEYFLS+ K + EK EKQ E + +++KR+
Sbjct: 237 KIGKGKKDQVFPPAPVPSKLDQQIESGEYFLSQEAKRRRAAAEKLEKQKEAVSASQKKRN 296
Query: 241 AAFIPPEE 248
AFI P+E
Sbjct: 297 EAFIAPKE 304
>gi|254565757|ref|XP_002489989.1| 90S preribosome/SSU processome component KRR1 [Komagataella
pastoris GS115]
gi|238029785|emb|CAY67708.1| Essential nucleolar protein required for the synthesis of 18S rRNA
[Komagataella pastoris GS115]
gi|328350400|emb|CCA36800.1| Ribosomal RNA assembly protein KRR1 [Komagataella pastoris CBS
7435]
Length = 314
Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 161/253 (63%), Positives = 202/253 (79%), Gaps = 2/253 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + + CELNLVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 59 VAKALNAHHIGCELNLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPLPQAVKILQD 118
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIG + NKERF KRRQ LVGPN +TLKALE+LTGCYILVQGNTV+ MG FKG
Sbjct: 119 DISCDVIKIGGNLDNKERFTKRRQRLVGPNGNTLKALELLTGCYILVQGNTVSVMGPFKG 178
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKV 180
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P L NE+W RFLP F+K+NV ++ K+
Sbjct: 179 LKEVRRVVEDCMKN-VHPIYHIKELMIKRELAKKPELVNEDWSRFLPMFRKRNVARKNKI 237
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KEKKPYTPFPP +P K+D +ESGEYFL +R K++K+ QEK++KQ E T + + R+
Sbjct: 238 SKKEKKPYTPFPPQQKPRKVDLQIESGEYFLGDRAKKAKELQEKRDKQQEVTDKKRDDRN 297
Query: 241 AAFIPPEEPSRQN 253
++ PEE R+N
Sbjct: 298 KGYVAPEEEHRKN 310
>gi|358365716|dbj|GAA82338.1| ribosomal RNA assembly protein mis3 [Aspergillus kawachii IFO 4308]
Length = 368
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 200/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+
Sbjct: 58 VVTRALEKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI N VRNKERFVKRRQ ++GP STLKALE+LT YILVQGNTVAAMG +K
Sbjct: 118 DDVACDIIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRI+ DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRIINDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ ++ +E E+Q K E
Sbjct: 237 PFKVTDKTKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRQQKEEVMERQRLKREEKM 296
Query: 237 RKRDAAFIPPEE 248
++R+ AF+PPEE
Sbjct: 297 KEREKAFVPPEE 308
>gi|298708603|emb|CBJ26090.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 398
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/248 (64%), Positives = 207/248 (83%), Gaps = 2/248 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ GVSCEL+L+EGSMTV TTRKTRDPY+IVKARDLI+LL+RS+PA QA+++L+
Sbjct: 56 IVTKALQKRGVSCELDLIEGSMTVRTTRKTRDPYVIVKARDLIKLLARSIPAQQALRVLE 115
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG +VRNKERFVKRR LVGP+ STLKALE+LTGCY+LVQGNTV+AMGS++
Sbjct: 116 DDVNCDIIKIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 175
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLKQVR++V DCM N +HPVY+IK LM+++EL KDP L +ENW+RFLP+F KKNVK+KK
Sbjct: 176 GLKQVRKVVTDCMNN-VHPVYNIKTLMIRRELAKDPNLKDENWERFLPQFHKKNVKRKKP 234
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+EKK YTPFPP P K+D+ LESGE+FL+ER++++KK EK+ K AE +A ++ R
Sbjct: 235 AVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKAKSAELSAAKRKNR 294
Query: 240 DAAFIPPE 247
+ P E
Sbjct: 295 EQDLEPTE 302
>gi|401626633|gb|EJS44561.1| krr1p [Saccharomyces arboricola H-6]
Length = 316
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 164/250 (65%), Positives = 201/250 (80%), Gaps = 4/250 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ +VGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRMVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K K
Sbjct: 180 LKEVRRVVEDCMKN-VHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +
Sbjct: 239 KIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEE 298
Query: 239 RDAAFIPPEE 248
R F PEE
Sbjct: 299 RAKDFTAPEE 308
>gi|121715638|ref|XP_001275428.1| 90S preribosome/SSU processome component KRR1 [Aspergillus clavatus
NRRL 1]
gi|119403585|gb|EAW14002.1| rRNA assembly protein Mis3, putative [Aspergillus clavatus NRRL 1]
Length = 354
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 198/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRKT DP I+K RDLI+LLSRSVP QA+KILD
Sbjct: 58 VVTRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKGRDLIKLLSRSVPVQQALKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ CDIIKI + VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQGNTVAAMG +K
Sbjct: 118 DEVACDIIKIRSQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR++ DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRVINDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRT 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E
Sbjct: 237 PFKVTDKSKKAYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRVKREEKM 296
Query: 237 RKRDAAFIPPEE 248
++R AF+PPEE
Sbjct: 297 QERAKAFVPPEE 308
>gi|225679901|gb|EEH18185.1| ribosomal RNA assembly protein mis3 [Paracoccidioides brasiliensis
Pb03]
gi|226291669|gb|EEH47097.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides brasiliensis
Pb18]
Length = 359
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 200/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
MV AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 MVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKERFVKRRQ ++GP+ +TLKALE+LT YILVQGNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEIRRVVEDCMAN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS++ KE K +E EKQ EK
Sbjct: 237 PFKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKQAKERAKKEEMMEKQREKRENKA 296
Query: 237 RKRDAAFIPPEE 248
R+ + F PP+E
Sbjct: 297 RELEKDFEPPKE 308
>gi|212543807|ref|XP_002152058.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066965|gb|EEA21058.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 309
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 197/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ L++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP QA+KIL+
Sbjct: 18 LITRTLEKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPVQQALKILE 77
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+AMG FK
Sbjct: 78 DGVACDIIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVSAMGPFK 137
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR++EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++
Sbjct: 138 GLKEVRRVIEDCMAN-IHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRV 196
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K +K YTPFPPP + SKIDK LESGEYFLS++ KE + +E QEKQ EK E
Sbjct: 197 PHKVTDKSQKAYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRKEEIQEKQREKREEKM 256
Query: 237 RKRDAAFIPPEE 248
++R F+PP E
Sbjct: 257 KERQKDFVPPTE 268
>gi|315052040|ref|XP_003175394.1| 90S preribosome/SSU processome component KRR1 [Arthroderma gypseum
CBS 118893]
gi|311340709|gb|EFQ99911.1| ribosomal RNA assembly protein KRR1 [Arthroderma gypseum CBS
118893]
Length = 327
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 203/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPASILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG FK
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTSTYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++
Sbjct: 178 GLKEVRRVVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGEYFL+++ KE + +E EKQ EK AE
Sbjct: 237 PFKVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLTKQAKERARKEEIMEKQREKRAEKV 296
Query: 237 RKRDAAFIPPEE 248
++++ FIPP+E
Sbjct: 297 KEQEKDFIPPKE 308
>gi|295667095|ref|XP_002794097.1| 90S preribosome/SSU processome component KRR1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226286203|gb|EEH41769.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 356
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 199/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
MV AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 MVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKERFVKRRQ ++GP+ +TLKALE+LT YILVQGNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEIRRVVEDCMAN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS++ KE K +E EKQ EK
Sbjct: 237 PFKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKQAKERAKKEEMMEKQREKRENKT 296
Query: 237 RKRDAAFIPPEE 248
R+ F PP+E
Sbjct: 297 RELQKDFEPPKE 308
>gi|145232010|ref|XP_001399471.1| 90S preribosome/SSU processome component KRR1 [Aspergillus niger
CBS 513.88]
gi|134056381|emb|CAK47615.1| unnamed protein product [Aspergillus niger]
gi|350634424|gb|EHA22786.1| hypothetical protein ASPNIDRAFT_55540 [Aspergillus niger ATCC 1015]
Length = 367
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/252 (62%), Positives = 200/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+
Sbjct: 58 VVTRALEKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI N VRNKERFVKRRQ ++GP STLKALE+LT YILVQGNTV+AMG +K
Sbjct: 118 DDVACDIIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRI+ DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRIINDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ ++ +E E+Q K E
Sbjct: 237 PFKVTDKTKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRQQKEEVMERQRLKREEKM 296
Query: 237 RKRDAAFIPPEE 248
++R+ AF+PPEE
Sbjct: 297 KEREKAFVPPEE 308
>gi|354546423|emb|CCE43153.1| hypothetical protein CPAR2_207960 [Candida parapsilosis]
Length = 363
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 156/254 (61%), Positives = 203/254 (79%), Gaps = 3/254 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + CEL+LVEG+MTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALDKHHIRCELDLVEGAMTVKTTTKTFDPAMILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DVACDVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+ EDCM+N +HP+Y+IK LM+K+EL+K+P LA+E+W RFLP FKK+NV +KKVK
Sbjct: 180 LKEVRRVAEDCMKN-IHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVK 238
Query: 182 SK--EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+ EKK YTPFPP QP K+D +ESGEYFL +R++E KK QEK+ Q E + +++R
Sbjct: 239 TSKVEKKVYTPFPPAQQPRKVDLQIESGEYFLGKRERELKKIQEKRALQEENSELKRQER 298
Query: 240 DAAFIPPEEPSRQN 253
++ PEE +N
Sbjct: 299 AKGYVAPEEEQYEN 312
>gi|213402313|ref|XP_002171929.1| 90S preribosome/SSU processome component KRR1 [Schizosaccharomyces
japonicus yFS275]
gi|211999976|gb|EEB05636.1| ribosomal RNA assembly protein mis3 [Schizosaccharomyces japonicus
yFS275]
Length = 334
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 170/253 (67%), Positives = 208/253 (82%), Gaps = 2/253 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +YG++C L+LVEGSMTV TTRK DPY I+KARDLI+LL+RSVP PQAIK++ D
Sbjct: 73 VTRALDKYGIACVLDLVEGSMTVKTTRKAYDPYSILKARDLIKLLARSVPFPQAIKVMQD 132
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGNLVRNK+RF+KRRQ L+G N TLKALE+LT CYILVQG TVAAMG FKG
Sbjct: 133 DVACDVIKIGNLVRNKDRFIKRRQRLIGNNGQTLKALELLTQCYILVQGTTVAAMGGFKG 192
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-V 180
LK+VRR+V DCM N +HP+YHIK LM+K+EL KDPALA E+WDRFLP+FKK+NV ++K
Sbjct: 193 LKEVRRVVIDCMNN-IHPIYHIKELMIKRELAKDPALATESWDRFLPQFKKRNVARRKPA 251
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K +EKK YTPFPP QPSKID +ESGEYFL++ ++E KK QEK+EKQAEK E + +R+
Sbjct: 252 KVREKKDYTPFPPAQQPSKIDLQIESGEYFLNKEERERKKRQEKKEKQAEKQKERQAERE 311
Query: 241 AAFIPPEEPSRQN 253
AFIPP E + Q
Sbjct: 312 KAFIPPTESAPQT 324
>gi|344233678|gb|EGV65550.1| eukaryotic type KH-domain (KH-domain type I) [Candida tenuis ATCC
10573]
gi|344233679|gb|EGV65551.1| hypothetical protein CANTEDRAFT_113171 [Candida tenuis ATCC 10573]
Length = 338
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/252 (62%), Positives = 200/252 (79%), Gaps = 1/252 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C+L+LVEGSMTV TT KT DP II+KARDLI+LL+RSVP PQA+K+L D
Sbjct: 60 VTKALDKHHIACQLDLVEGSMTVRTTGKTFDPAIILKARDLIKLLARSVPFPQAVKVLQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ C++IKIGN+V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG + G
Sbjct: 120 DTACEVIKIGNVVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYSG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLPKFKK+NV++KK
Sbjct: 180 LKTVRRVVEDCMKN-VHPIYHIKELMIKQELSKKPELANEDWSRFLPKFKKQNVQRKKAP 238
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
+EKK YTPFPP QP KID +ESGEYFL + +K+ K+ EK+EKQ E + +++R
Sbjct: 239 KREKKVYTPFPPQQQPRKIDMQIESGEYFLRKSEKKQKQMDEKKEKQEEALSAKQQQRQQ 298
Query: 242 AFIPPEEPSRQN 253
+ PEE S +N
Sbjct: 299 DYEAPEEESYEN 310
>gi|397640808|gb|EJK74329.1| hypothetical protein THAOC_03996 [Thalassiosira oceanica]
Length = 420
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/266 (60%), Positives = 203/266 (76%), Gaps = 22/266 (8%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V L +Y ++CELNLVEGSMTV TTRKT DPYII+KARDLI+LL+RS+PAPQA+KIL+
Sbjct: 87 LVTRTLDKYKIACELNLVEGSMTVRTTRKTSDPYIILKARDLIKLLARSIPAPQALKILN 146
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE CDIIKIG LVRNKERFVKRRQ L+GP+ +TLKALE+LT CYILVQGNTV+ MG+ K
Sbjct: 147 DEYNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNTVSVMGTHK 206
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
G+K+VR +V +CM N +HPVY+IK LM+ KELEKDP L NE+W+RFLP F+KKN+ ++
Sbjct: 207 GIKKVRTVVIECMNN-IHPVYNIKRLMIMKELEKDPKLQNESWERFLPTFQKKNLSKRRK 265
Query: 179 ------------------KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKK 220
KV+SK KK YTPFPP QPSKID L+SGEYFLSER++++++
Sbjct: 266 PRQVVEEAQKAAKNGGEGKVRSK-KKSYTPFPPAQQPSKIDLQLDSGEYFLSERERKARQ 324
Query: 221 WQEKQEKQAEKTAENKRKRDAAFIPP 246
EK+ EK+ E +R R+ F+ P
Sbjct: 325 LSEKKMASKEKSEEKRRAREMEFVHP 350
>gi|296817933|ref|XP_002849303.1| 90S preribosome/SSU processome component KRR1 [Arthroderma otae CBS
113480]
gi|238839756|gb|EEQ29418.1| ribosomal RNA assembly protein mis3 [Arthroderma otae CBS 113480]
Length = 349
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/254 (62%), Positives = 204/254 (80%), Gaps = 5/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LITKALEKNGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG FK
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++
Sbjct: 178 GLKEVRRVVEDCMNN-IHPIYHIKELMIKRELAKDPQLAEESWDRFLPQLKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE
Sbjct: 237 PFKVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKM 296
Query: 237 RKRDAAFIPPEEPS 250
++++ +IPP+E +
Sbjct: 297 KEQEKDYIPPKEDT 310
>gi|430812870|emb|CCJ29739.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 329
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 163/247 (65%), Positives = 201/247 (81%), Gaps = 1/247 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V L YG+SC L+L+ GSMTV TTRKT+DP I+KARDLI+LL+RSVP PQAIKI+DD
Sbjct: 76 VTQNLNNYGISCVLDLIVGSMTVKTTRKTKDPCSILKARDLIKLLARSVPFPQAIKIMDD 135
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CDIIKIG +RNKERF+KRRQ ++GPN STLKALE+LT CYI+VQGNTV+ MG++KG
Sbjct: 136 SMACDIIKIGGFLRNKERFIKRRQRILGPNGSTLKALELLTQCYIMVQGNTVSVMGNYKG 195
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VR+IVEDCM+N +HP+YHIK LM+K+EL KDP L NE+WDRFLP FKK+NV ++K K
Sbjct: 196 LKEVRKIVEDCMKN-IHPIYHIKELMIKRELAKDPVLKNESWDRFLPHFKKRNVARRKPK 254
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
+ K YTPFPPP QPSKID +ESGEYF+S+R KE KK +E +EKQA + E ++R
Sbjct: 255 QIKIKEYTPFPPPQQPSKIDLQIESGEYFMSKRAKEKKKREENKEKQARISKERSKERQK 314
Query: 242 AFIPPEE 248
AF PP+E
Sbjct: 315 AFEPPKE 321
>gi|212543805|ref|XP_002152057.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066964|gb|EEA21057.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 349
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 197/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ L++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP QA+KIL+
Sbjct: 58 LITRTLEKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+AMG FK
Sbjct: 118 DGVACDIIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVSAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR++EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRVIEDCMAN-IHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K +K YTPFPPP + SKIDK LESGEYFLS++ KE + +E QEKQ EK E
Sbjct: 237 PHKVTDKSQKAYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRKEEIQEKQREKREEKM 296
Query: 237 RKRDAAFIPPEE 248
++R F+PP E
Sbjct: 297 KERQKDFVPPTE 308
>gi|322706650|gb|EFY98230.1| rRNA assembly protein Mis3, putative [Metarhizium anisopliae ARSEF
23]
Length = 320
Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 197/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKSLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CD+IKI NLV +K+RFVKRRQ ++GPN STLKALE+LT YILV GNTV AMG +K
Sbjct: 118 DGMACDVIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHGNTVCAMGGYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK +RRI+EDCM N +HP+YHIK LM+K+EL KDP L NE+WDRFLP FKKK + +
Sbjct: 178 GLKDLRRIIEDCMAN-IHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSHRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SKIDK +ESGEYFL++ K+ +E+ EKQ + E
Sbjct: 237 PHKVTDKTKKAYTPFPPAPEQSKIDKQIESGEYFLAKGAKDRAAREERNEKQKLRKEEKT 296
Query: 237 RKRDAAFIPPEE 248
++R+A F+PPEE
Sbjct: 297 KEREAEFVPPEE 308
>gi|50304523|ref|XP_452216.1| 90S preribosome/SSU processome component KRR1 [Kluyveromyces lactis
NRRL Y-1140]
gi|49641349|emb|CAH01067.1| KLLA0C00506p [Kluyveromyces lactis]
Length = 330
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 163/248 (65%), Positives = 201/248 (81%), Gaps = 2/248 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V +L + ++CELNLVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL+D
Sbjct: 60 VTRSLDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG +KG
Sbjct: 120 DVACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKV 180
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV ++K
Sbjct: 180 LKEVRRVVEDCMKN-VHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFKKRNVARKKPK 238
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KEKK YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QA K AE + +R
Sbjct: 239 KIKEKKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERA 298
Query: 241 AAFIPPEE 248
FI P+E
Sbjct: 299 KDFIAPKE 306
>gi|398397527|ref|XP_003852221.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
gi|339472102|gb|EGP87197.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
Length = 887
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 154/250 (61%), Positives = 193/250 (77%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ L++YG++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 605 MITRQLEKYGIACTLDLVEGSMTVKTTRKTYDPASILNARDLIKLLARSVPAPQAVKILE 664
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CD+IKI +VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+ MG +K
Sbjct: 665 DGMACDVIKIRGMVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGGYK 724
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
LK+VRR+VEDCM N +HP+YH+K LM+K+EL KDP L NENWDRFLP FKK+N+ +++
Sbjct: 725 SLKEVRRVVEDCMDN-IHPIYHVKELMIKRELAKDPELKNENWDRFLPHFKKRNLSKRRV 783
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
V K KK YTPFPPP + SK+D +ESGEYFL+ KE + +++ EK E K
Sbjct: 784 PRNVSDKSKKVYTPFPPPQEKSKVDLQIESGEYFLNNAAKERVAKERREDAMKEKMEERK 843
Query: 237 RKRDAAFIPP 246
RKR+ AF P
Sbjct: 844 RKREEAFEAP 853
>gi|346472733|gb|AEO36211.1| hypothetical protein [Amblyomma maculatum]
Length = 349
Score = 323 bits (828), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 152/251 (60%), Positives = 203/251 (80%), Gaps = 3/251 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L E+G++ EL+++EGSMTV+TTRK DPYII+KARD+I+LLSRSVP QAI++L+
Sbjct: 58 LVKKTLAEHGITAELDVIEGSMTVTTTRKMWDPYIILKARDMIKLLSRSVPYEQAIRVLE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDI+KIG LVRN+ERFVKRRQ L+GPN +TLKA+E+LT CY+LVQGNTV+A+G +K
Sbjct: 118 DDVGCDIVKIGRLVRNRERFVKRRQRLIGPNGTTLKAIELLTNCYVLVQGNTVSALGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GL+ VR+IVED M+N +HPVY+IK LM+K+EL KDP L NENWDRFLP FK + + ++K
Sbjct: 178 GLQHVRKIVEDTMKN-IHPVYNIKALMIKRELAKDPNLRNENWDRFLPHFKAQTLSKRKK 236
Query: 180 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K + K YTPFPPP SK+DK L SGEYFL E ++++KK QEKQ+ +AE + + +
Sbjct: 237 PKKQRTKGEYTPFPPPQPESKMDKELASGEYFLKEHERKAKKAQEKQQAKAEAEVKRQER 296
Query: 239 RDAAFIPPEEP 249
R+ +F PP+EP
Sbjct: 297 RNKSFQPPQEP 307
>gi|156847828|ref|XP_001646797.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156117478|gb|EDO18939.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 338
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 159/267 (59%), Positives = 207/267 (77%), Gaps = 3/267 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + ++C L+LVEGSMTV TTRKT DPY I+KARDLI+LL+RSVP PQAIKIL+D
Sbjct: 60 VTKALDKRHIACTLDLVEGSMTVKTTRKTFDPYAILKARDLIKLLARSVPFPQAIKILED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSCMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK++RR+VEDCM+N +HP+YHIK LM+K+EL K P LA+E+W RFLP FKK+NV +KK
Sbjct: 180 LKEIRRVVEDCMKN-VHPIYHIKELMIKRELAKRPELADEDWSRFLPMFKKRNVARKKAA 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+K+ YTPFPP QP K+D +ESGEYFLS+++KE K+ QE++E+Q++K E +++R
Sbjct: 239 KPKKEKKVYTPFPPAQQPRKVDLEIESGEYFLSKKEKEVKRLQERREEQSQKQIEKEKER 298
Query: 240 DAAFIPPEEPSRQNSCEAEDKTNDVAA 266
++ P E +++ K ++
Sbjct: 299 SKDYVAPMEEEYKSTITKSSKKRSIST 325
>gi|345560274|gb|EGX43399.1| hypothetical protein AOL_s00215g135 [Arthrobotrys oligospora ATCC
24927]
Length = 352
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 154/252 (61%), Positives = 203/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ L + G++ L++VEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 LITRTLAKSGINAILDVVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LV N+++F KRRQ +VGPN STLKALE+LTGCYILVQG TV+AMG +K
Sbjct: 118 DDVACDIIKIGSLVPNRQKFAKRRQRMVGPNGSTLKALELLTGCYILVQGTTVSAMGGYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM+N +HP+YHIK LM+K+EL KDPALANE+WDRFLP+FKKK + ++
Sbjct: 178 GLKEIRRVVEDCMKN-IHPIYHIKELMIKRELAKDPALANESWDRFLPQFKKKTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K +K YTPFPP + SK+D +ESGEYFLS+ +KE ++K+E Q EK + +
Sbjct: 237 PFKVTDKSRKVYTPFPPAQEKSKVDLQIESGEYFLSKPQKEQAAAEKKEEAQREKKEQRQ 296
Query: 237 RKRDAAFIPPEE 248
++R+ F+PPEE
Sbjct: 297 KEREQDFVPPEE 308
>gi|322700928|gb|EFY92680.1| rRNA assembly protein Mis3, putative [Metarhizium acridum CQMa 102]
Length = 320
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 154/252 (61%), Positives = 199/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ +L+++G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LITKSLEKHGIACTLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CD+IKI NLV +K+RFVKRRQ ++GPN STLKALE+LT YILV GNTV AMG +K
Sbjct: 118 DGMACDVIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHGNTVCAMGGYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RRIVEDCM N +HP+YHIK LM+K+EL KDP L NE+WDRFLP FKKK + ++
Sbjct: 178 GLKELRRIVEDCMAN-IHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSRRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +ESGEYFL + K+ +E++EKQ + E
Sbjct: 237 PHKVTDKSKKVYTPFPPAPEQSKVDKQIESGEYFLGKEAKDRAAKEERKEKQKLRKEEKT 296
Query: 237 RKRDAAFIPPEE 248
++R+A F+PPEE
Sbjct: 297 KEREAEFVPPEE 308
>gi|260941444|ref|XP_002614888.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
gi|238851311|gb|EEQ40775.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
Length = 373
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/253 (63%), Positives = 203/253 (80%), Gaps = 2/253 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + ++C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALDSHHIACQLDLVEGSMTVKTTRKTFDPAMILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NKERF KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DIACDVIKIGNFVSNKERFTKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKV 180
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL K+P LA+E+W RFLP FKKKNV ++K
Sbjct: 180 LKEVRRVVEDCMKN-VHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFKKKNVARKKTA 238
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K+KK YTPFPP P K+D +ESGEYFL +R+K K+ QEK+ KQAE T + K +R+
Sbjct: 239 IEKKKKVYTPFPPAQTPRKVDLQIESGEYFLGKREKHLKELQEKRAKQAEVTEQRKEERN 298
Query: 241 AAFIPPEEPSRQN 253
AF PEE + +N
Sbjct: 299 QAFEAPEEEAYEN 311
>gi|50285113|ref|XP_444985.1| 90S preribosome/SSU processome component KRR1 [Candida glabrata CBS
138]
gi|49524288|emb|CAG57885.1| unnamed protein product [Candida glabrata]
Length = 337
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 162/256 (63%), Positives = 202/256 (78%), Gaps = 5/256 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHHIGCTLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DIACDVIKIGNTVANKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--- 178
LK++RR+V DCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +K
Sbjct: 180 LKEIRRVVLDCMKN-VHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPS 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
KVK+ EKK YTPFPP P K+D +ESGEYFLS+++KE KK E++EKQAEK +
Sbjct: 239 KVKA-EKKVYTPFPPAQLPRKVDLQIESGEYFLSKKEKEIKKLHEQREKQAEKQILKDEE 297
Query: 239 RDAAFIPPEEPSRQNS 254
R +I P+E ++S
Sbjct: 298 RRKDYIAPKEDEYKSS 313
>gi|328769725|gb|EGF79768.1| hypothetical protein BATDEDRAFT_35295 [Batrachochytrium
dendrobatidis JAM81]
Length = 369
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 200/264 (75%), Gaps = 1/264 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ +L + G++C L+LVEGS+TV TTRKT DPYII+KARD+IRLLSRSV QA+KIL+
Sbjct: 78 MITASLDKVGLACALDLVEGSITVKTTRKTYDPYIILKARDMIRLLSRSVQFNQAVKILE 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKIG LVRNKERFVKRRQ L+GP STLKA+E+LT CY+LVQGNTVAAMG FK
Sbjct: 138 DGVACDIIKIGGLVRNKERFVKRRQRLLGPKGSTLKAIELLTNCYVLVQGNTVAAMGPFK 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK VRR++ DCM+N +HP+YHIK LM+K+EL KD L E+WDRFLPKFKK+NV+ K
Sbjct: 198 GLKDVRRLILDCMKN-IHPIYHIKELMIKRELAKDEKLKEESWDRFLPKFKKRNVQSSKK 256
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KK TPFPPP QP KID +ESGE+FLS+ ++++ Q+K+EKQ + + + R
Sbjct: 257 VKIVKKERTPFPPPQQPRKIDLQIESGEFFLSKTERDAAARQKKKEKQDANSLKKQEARQ 316
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDV 264
AFI P EP R S ++ K +
Sbjct: 317 EAFIAPAEPKRTKSESSQQKPQSI 340
>gi|393215379|gb|EJD00870.1| ribosomal RNA assembly protein mis3 [Fomitiporia mediterranea
MF3/22]
Length = 393
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/275 (58%), Positives = 203/275 (73%), Gaps = 29/275 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +G++C L+L+ GSM V TTRKT DPYII+KARD+I+LL+R V QA+KIL+D
Sbjct: 71 VTKALESHGIACTLDLIHGSMAVRTTRKTFDPYIILKARDMIKLLARGVALGQAVKILND 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CDIIKIG LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQGNTV+AMG +K
Sbjct: 131 DMACDIIKIGGLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGNTVSAMGPYKS 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKK 179
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LANE+WDRFLPKF+K+++K +K
Sbjct: 191 LKEVRRIVLDCMRN-IHPIYRIKELMIKRELAKDPKLANESWDRFLPKFRKRHLKTSEKT 249
Query: 180 VKSKE--------------------------KKPYTPFPPPPQPSKIDKLLESGEYFLSE 213
+ E KK YTPFPPP QP K+D LESGEYFL
Sbjct: 250 ARKNEAHRSKDEARKEAGLDVDGSTTANIPKKKVYTPFPPPQQPRKVDLQLESGEYFLKP 309
Query: 214 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
R+KE+K+ Q+++EKQAE TAE + KR AF+ P E
Sbjct: 310 REKEAKEAQKRKEKQAEVTAERQAKRAEAFVAPTE 344
>gi|71001580|ref|XP_755471.1| rRNA assembly protein Mis3 [Aspergillus fumigatus Af293]
gi|66853109|gb|EAL93433.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus Af293]
gi|159129540|gb|EDP54654.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus A1163]
Length = 358
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/250 (63%), Positives = 197/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+
Sbjct: 58 VVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI N VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQGNTVAAMG +K
Sbjct: 118 DGVACDIIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q +K E
Sbjct: 237 PYKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRQKREEKM 296
Query: 237 RKRDAAFIPP 246
++R +FIPP
Sbjct: 297 KERAKSFIPP 306
>gi|380492294|emb|CCF34707.1| ribosomal RNA assembly protein KRR1 [Colletotrichum higginsianum]
Length = 323
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 157/252 (62%), Positives = 197/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKTGIACSLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI NLVRNKER+VKRRQ ++GPN STLKALE+LT YILVQG+TV+ MG FK
Sbjct: 118 DGVACDVIKIRNLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + +
Sbjct: 178 GLKEVRRVVEDCMAN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSSRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E
Sbjct: 237 PLKVTDKTKKVYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERMEQQKQKKVERL 296
Query: 237 RKRDAAFIPPEE 248
R+R+ +IPPEE
Sbjct: 297 REREKEYIPPEE 308
>gi|119481157|ref|XP_001260607.1| 90S preribosome/SSU processome component KRR1 [Neosartorya fischeri
NRRL 181]
gi|119408761|gb|EAW18710.1| rRNA assembly protein Mis3, putative [Neosartorya fischeri NRRL
181]
Length = 358
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/250 (63%), Positives = 197/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+
Sbjct: 58 VVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI N VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQGNTVAAMG +K
Sbjct: 118 DGVACDIIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q +K E
Sbjct: 237 PYKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRQKREEKM 296
Query: 237 RKRDAAFIPP 246
++R +F+PP
Sbjct: 297 KERAKSFVPP 306
>gi|237832063|ref|XP_002365329.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|211962993|gb|EEA98188.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|221486813|gb|EEE25059.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii GT1]
gi|221506516|gb|EEE32133.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii VEG]
Length = 394
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 217/286 (75%), Gaps = 11/286 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK AL ++ V EL+L+EGSMTV TT+KT DPYII+KARD+I+LL+RSVP QA KILDD
Sbjct: 97 VKRALGQHFVKAELDLIEGSMTVRTTKKTFDPYIIIKARDMIKLLARSVPIAQARKILDD 156
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CDIIKIG +VRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV+ MG+ KG
Sbjct: 157 GMFCDIIKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQGQTVSVMGTHKG 216
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+K V+R+VEDCM+N +HPVYHIK LM+K+ELEKDPAL ENW+RFLP+FKK+NV++K +
Sbjct: 217 IKVVQRLVEDCMKN-IHPVYHIKELMIKRELEKDPALVEENWERFLPQFKKRNVQRKARR 275
Query: 182 SK-EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+ +KK + FPP P K D LLESGEYF++E +K+ KK +E EK+ +TAE KR+R
Sbjct: 276 AAIKKKSKSLFPPEQTPRKEDLLLESGEYFVTEEQKQMKKAKEVLEKREMRTAERKRERQ 335
Query: 241 AAFIPPEEPS--------RQNSCEAEDKTND-VAAMAKSLKEKAKK 277
AF P E S +++ AE + D ++A+A+ L+ + KK
Sbjct: 336 QAFEPSAENSAKKRHAGTAESAGSAESASRDSISAIAERLQVRTKK 381
>gi|330919489|ref|XP_003298637.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora teres f.
teres 0-1]
gi|311328077|gb|EFQ93271.1| hypothetical protein PTT_09405 [Pyrenophora teres f. teres 0-1]
Length = 343
Score = 319 bits (818), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 158/252 (62%), Positives = 196/252 (77%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+ AL++ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILD
Sbjct: 58 FITQALQKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ DIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVAAMG +K
Sbjct: 118 DEVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLKQVRRIVED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++
Sbjct: 178 GLKQVRRIVEDTMHN-IHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFL + KE K +E+++K +K +
Sbjct: 237 PHKVNDKTKKTYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREDKMKDKMDAKR 296
Query: 237 RKRDAAFIPPEE 248
R+R ++ P+E
Sbjct: 297 RERMQEYVAPDE 308
>gi|71018315|ref|XP_759388.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
gi|46099113|gb|EAK84346.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
Length = 364
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 202/260 (77%), Gaps = 14/260 (5%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++G++C L+LVEGSMTV TTRKT DPYI++KARD+IRLLSRSVP PQA+KIL+D
Sbjct: 73 VTSALEKHGIACTLDLVEGSMTVKTTRKTYDPYIVLKARDMIRLLSRSVPFPQAVKILED 132
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++CD+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LT CY+LVQGNTV AMG FK
Sbjct: 133 GIECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQGNTVCAMGQFKN 192
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRIV DC++N +HP+YHIK LM+K+EL KDP LA ENW+RFLPKFKK+N K+K
Sbjct: 193 LKEVRRIVIDCLKN-IHPIYHIKELMIKRELAKDPKLAQENWERFLPKFKKQNQKKKPTT 251
Query: 182 SKEK-------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQ 228
+ + K YTPFPPP QPSKID LESGEYFL R+K+ +K KQ
Sbjct: 252 TDAEGEARKNDKKVIKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRQKKQAAEAQKLAKQ 311
Query: 229 AEKTAENKRKRDAAFIPPEE 248
A+ + +++R AF+PP E
Sbjct: 312 ADHKEKREQERQKAFVPPTE 331
>gi|451848013|gb|EMD61319.1| hypothetical protein COCSADRAFT_201760 [Cochliobolus sativus
ND90Pr]
Length = 344
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/250 (62%), Positives = 195/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+ AL+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 FITQALQRLGIGCELNLVEGSMTVWTTKKTYDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVA MG +K
Sbjct: 118 DDVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVACMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLKQVRRI+ED M N +HP+Y IK LM+KKEL KDP LANE+WDRFLP FKK+++ ++
Sbjct: 178 GLKQVRRIIEDTMHN-IHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRI 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KKPYTPFPPP + SK+D +ESGEYFL + KE K +E++EK +K +
Sbjct: 237 PHKVNDKSKKPYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREEKMKDKMDAKR 296
Query: 237 RKRDAAFIPP 246
++R A ++ P
Sbjct: 297 KERMAEYVAP 306
>gi|425781142|gb|EKV19124.1| RRNA assembly protein Mis3, putative [Penicillium digitatum PHI26]
gi|425783173|gb|EKV21033.1| RRNA assembly protein Mis3, putative [Penicillium digitatum Pd1]
Length = 376
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/252 (62%), Positives = 195/252 (77%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+K+RDLI+LL+RSVP QA+KIL+
Sbjct: 58 VVTRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKSRDLIKLLARSVPVTQAMKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI N VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTVA MG FK
Sbjct: 118 DGVACDVIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVAVMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRI++DCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRIIDDCMAN-IHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV KEKK YTPFPP P+ SK+D +ESGEYFLS+ KE +E E+Q K E
Sbjct: 237 PFKVTDKEKKTYTPFPPAPEKSKVDLQIESGEYFLSKEAKERVHKEEVVERQRLKRDEKM 296
Query: 237 RKRDAAFIPPEE 248
R+R+ F+ PEE
Sbjct: 297 REREKDFVAPEE 308
>gi|259479960|tpe|CBF70657.1| TPA: rRNA assembly protein Mis3, putative (AFU_orthologue;
AFUA_2G11380) [Aspergillus nidulans FGSC A4]
Length = 358
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/250 (62%), Positives = 197/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+
Sbjct: 58 VVTRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI N VRNKERFVKRRQ ++GP STLKALE+LTG YILVQGNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRIV+DCM N +HP+YHIK LM+K+EL KDP LA+E+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRIVDDCMAN-IHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRT 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E
Sbjct: 237 PFKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRIKREEKM 296
Query: 237 RKRDAAFIPP 246
++R+ AF+ P
Sbjct: 297 KEREKAFVAP 306
>gi|449682115|ref|XP_004210000.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Hydra magnipapillata]
Length = 402
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/276 (60%), Positives = 214/276 (77%), Gaps = 5/276 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L + + C L++VEGSMTV+TTRKT DPYII+KARD+I+L+SR V Q+ ++L+
Sbjct: 116 LVKEKLGSHHIRCALDVVEGSMTVATTRKTFDPYIILKARDMIKLMSRGVSYEQSCRVLE 175
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERF+KRRQ L+GPN +TLKALE+LT CYILVQG TV+A+GSFK
Sbjct: 176 DDVACDIIKIRNLVRNKERFIKRRQRLIGPNGATLKALELLTECYILVQGGTVSAIGSFK 235
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVR +VE+ M+N +HP+Y+IKI+M+K+EL KDP L NENW RFLPKFK KNV++KK
Sbjct: 236 GLKQVRNVVEETMKN-IHPIYNIKIMMIKRELAKDPTLKNENWSRFLPKFKNKNVQRKKP 294
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KEKKPYTPFPPP Q SKID L SGEYFL++ +K K+ + K++KQ E + K KR
Sbjct: 295 KIKEKKPYTPFPPPQQESKIDIQLASGEYFLNKEEKVLKERENKKKKQEEAGVQRKIKRQ 354
Query: 241 AAFIPPEE--PSRQNSCEAEDKTN--DVAAMAKSLK 272
+FIPP E P+ +N E K+ DV + K++K
Sbjct: 355 QSFIPPSEVKPNDKNDTETSKKSTSVDVNVLKKNIK 390
>gi|189189298|ref|XP_001930988.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972594|gb|EDU40093.1| ribosomal RNA assembly protein mis3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/250 (63%), Positives = 194/250 (77%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+ AL++ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILD
Sbjct: 58 FITQALQKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ DIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVAAMG +K
Sbjct: 118 DEVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLKQVRRIVED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++
Sbjct: 178 GLKQVRRIVEDTMHN-VHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFL + KE K +E++EK +K +
Sbjct: 237 PHKVNDKTKKTYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREEKMKDKMDAKR 296
Query: 237 RKRDAAFIPP 246
R+R ++ P
Sbjct: 297 RERMQEYVAP 306
>gi|67539410|ref|XP_663479.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
gi|40739194|gb|EAA58384.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
Length = 348
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/250 (62%), Positives = 197/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+
Sbjct: 58 VVTRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI N VRNKERFVKRRQ ++GP STLKALE+LTG YILVQGNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRIV+DCM N +HP+YHIK LM+K+EL KDP LA+E+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRIVDDCMAN-IHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRT 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E
Sbjct: 237 PFKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRIKREEKM 296
Query: 237 RKRDAAFIPP 246
++R+ AF+ P
Sbjct: 297 KEREKAFVAP 306
>gi|389628494|ref|XP_003711900.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|351644232|gb|EHA52093.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|440470939|gb|ELQ39978.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae Y34]
gi|440488292|gb|ELQ68023.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae P131]
Length = 320
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 162/257 (63%), Positives = 199/257 (77%), Gaps = 5/257 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++YG++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 LVTKALEKYGIATTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKERF+KRRQ ++GPN STLKALE+LT YILV GNTV+AMG +K
Sbjct: 118 DGVACDIIKIRNLVRNKERFIKRRQRILGPNGSTLKALELLTSTYILVHGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+Y IK LMVK+EL KDPALANE+WDRFLP FKK+++ +
Sbjct: 178 GLKEVRRVVEDCMNN-VHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YT FPP P+ SK+D +ESGEYFL + K+ E+QE+ K E K
Sbjct: 237 PHKVNDKSKKTYTAFPPAPEKSKVDLQIESGEYFLGKEAKKRAAETERQEQAKVKKEERK 296
Query: 237 RKRDAAFIPPEEPSRQN 253
R+R+ F+PPEEP Q
Sbjct: 297 REREKDFVPPEEPGTQT 313
>gi|348690682|gb|EGZ30496.1| hypothetical protein PHYSODRAFT_477367 [Phytophthora sojae]
Length = 396
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/249 (61%), Positives = 200/249 (80%), Gaps = 2/249 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL + +SCELNLVEGSMTV TTRKT DPYI++KARDLI+LL+RS+P QA+KILD
Sbjct: 86 IVTKALDAHKISCELNLVEGSMTVRTTRKTTDPYIVLKARDLIKLLARSIPVNQAVKILD 145
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++QCDIIKIG LVRNKERFVKRRQ LVGP+ +TLKA+E+LT CY+LVQGNTV+AMGS+
Sbjct: 146 DDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGSYH 205
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK-QKK 179
GL+ VR+IVEDC N +HP+Y++K LM+K+EL KDP L +ENW+RFLP FKK+NV+ +K
Sbjct: 206 GLRNVRKIVEDCFAN-IHPIYNVKRLMIKRELAKDPKLKDENWERFLPNFKKQNVQTKKP 264
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K +EKK YTPFPP P SK+DK +ESGEYF+ E ++++ K Q+K E++ + K +
Sbjct: 265 KKVREKKEYTPFPPAPTASKVDKEIESGEYFMKEHERKAMKKQKKHEEKLRVLQKRKADK 324
Query: 240 DAAFIPPEE 248
A ++ P E
Sbjct: 325 MAEYVAPSE 333
>gi|19112865|ref|NP_596073.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe 972h-]
gi|26396376|sp|O74777.1|KRR1_SCHPO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein mis3
gi|3738208|emb|CAA21263.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe]
gi|5578744|dbj|BAA82594.1| Mis3 [Schizosaccharomyces pombe]
Length = 327
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/252 (65%), Positives = 204/252 (80%), Gaps = 2/252 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+ D
Sbjct: 73 VTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQD 132
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIGN++RNKERFVKRRQ L+G N TLKALE+LT CYILVQG TVA MG +KG
Sbjct: 133 GVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKG 192
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-V 180
LK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP+FKK+NV ++K
Sbjct: 193 LKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKPA 251
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K +E K YTPFPP PSK+D +ESGEYFL + +KE KK EK+E+Q EK E +++R
Sbjct: 252 KIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKERM 311
Query: 241 AAFIPPEEPSRQ 252
AFIPPEE S++
Sbjct: 312 KAFIPPEESSKK 323
>gi|440639323|gb|ELR09242.1| hypothetical protein GMDG_03815 [Geomyces destructans 20631-21]
Length = 386
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 198/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTRSLEKFGIACTLDLVEGSMTVKTTRKTYDPASILNARDLIKLLARSVPAPQAVKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + DIIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CYILVQGNTV+AMG +K
Sbjct: 118 DGVASDIIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RRI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+N+ ++
Sbjct: 178 GLKELRRIIEDCMSN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK TPFPPP + SK+D +ESGEYFL++ KE +++ E+Q EK E
Sbjct: 237 PLKVTDKSKKVRTPFPPPQEKSKVDLQIESGEYFLNKSAKERAVQEDRLERQKEKKIEKL 296
Query: 237 RKRDAAFIPPEE 248
KR+ F P+E
Sbjct: 297 AKREKEFKAPDE 308
>gi|50422687|ref|XP_459920.1| 90S preribosome/SSU processome component KRR1 [Debaryomyces
hansenii CBS767]
gi|49655588|emb|CAG88162.1| DEHA2E14146p [Debaryomyces hansenii CBS767]
Length = 360
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 200/256 (78%), Gaps = 5/256 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V L +Y + C+L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRNLDKYFIDCQLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DIACDVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM N +HP+Y+IK LM+K+EL K+P LA+E+W RFLP F+K+NV +KK K
Sbjct: 180 LKEVRRVVEDCMNN-VHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFRKRNVARKKSK 238
Query: 182 SKEKKP----YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 237
+K YTPFPP P K+D +ESGEYFL +++KE KK QEK++KQ E T K+
Sbjct: 239 KIGEKKEKKVYTPFPPAQLPRKVDLQIESGEYFLGKKEKERKKLQEKRDKQEEATEVKKQ 298
Query: 238 KRDAAFIPPEEPSRQN 253
+R F PEE S +N
Sbjct: 299 ERLKDFEAPEENSYEN 314
>gi|401406702|ref|XP_003882800.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
gi|325117216|emb|CBZ52768.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
Length = 394
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/280 (60%), Positives = 214/280 (76%), Gaps = 11/280 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK AL ++ V EL+LVEGSMTV TT+KT DPYII+KARD+I+LL+RSVP QA KILDD
Sbjct: 97 VKRALGQHFVKAELDLVEGSMTVRTTKKTYDPYIIIKARDMIKLLARSVPIAQARKILDD 156
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CDIIKIG +VRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV+ MG+ KG
Sbjct: 157 GMFCDIIKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQGQTVSVMGTHKG 216
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+K V+R+VEDCM+N +HPVYHIK LM+K+ELEKDPAL ENW+RFLP+FKK+NV++K +
Sbjct: 217 IKVVQRLVEDCMKN-IHPVYHIKELMIKRELEKDPALVAENWERFLPQFKKRNVQRKARR 275
Query: 182 SK-EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
++ +KK + FPP P K D LLESGEYF++E +K+ KK +E EK+ +TAE KR+R
Sbjct: 276 AEVKKKNKSLFPPEQTPRKEDLLLESGEYFVTEEQKQMKKAKEVLEKRELRTAERKRERQ 335
Query: 241 AAFIPPEEPS----RQNSCEA---EDKTN--DVAAMAKSL 271
AF P E S R N +A D T+ VAA+A+ L
Sbjct: 336 RAFEPSAENSAKKRRANFSDAAGDNDSTDSASVAAIAERL 375
>gi|255938969|ref|XP_002560254.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584876|emb|CAP82913.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 372
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 194/252 (76%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+
Sbjct: 58 VITRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKARDLIKLLARSVPVTQAMKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI N VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTVA MG FK
Sbjct: 118 DGVACDVIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVAVMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRI++DCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRRIIDDCMAN-IHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRHV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ KE +E E+Q K E
Sbjct: 237 PFKVTDKTKKTYTPFPPAPEKSKVDLQIESGEYFLSKEAKERVHKEEVVERQRLKRDEKM 296
Query: 237 RKRDAAFIPPEE 248
R+R+ F+ PEE
Sbjct: 297 REREKDFVAPEE 308
>gi|126132748|ref|XP_001382899.1| 90S preribosome/SSU processome component KRR1 [Scheffersomyces
stipitis CBS 6054]
gi|126094724|gb|ABN64870.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 356
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 158/254 (62%), Positives = 203/254 (79%), Gaps = 3/254 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V +L+++ + CEL+LVEG+MTV TT KT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKSLEKHFIKCELDLVEGAMTVKTTTKTFDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DIACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL K P LA E+W RFLP FKK+NV +KK K
Sbjct: 180 LKEVRRVVEDCMRN-VHPIYYIKELMIKQELSKKPELAEEDWSRFLPSFKKRNVARKKAK 238
Query: 182 S--KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
S +EKK YTPFPP P K+D +ESGEYFL +++K KK +EK+EKQ E + K++R
Sbjct: 239 SSKREKKVYTPFPPAQTPRKVDLQVESGEYFLGKKEKAMKKLKEKREKQEEASVARKQER 298
Query: 240 DAAFIPPEEPSRQN 253
+ ++ PEE +N
Sbjct: 299 EKDYVAPEEEKYEN 312
>gi|319411597|emb|CBQ73641.1| probable KRR1-required for 40S ribosome biogenesis [Sporisorium
reilianum SRZ2]
Length = 354
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 203/273 (74%), Gaps = 17/273 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++G++C L+LVEGSMTV TTRKT DPY I+KARD+IRLLSRSVP PQA+KIL+D
Sbjct: 73 VTSALDKHGIACTLDLVEGSMTVKTTRKTYDPYSILKARDMIRLLSRSVPFPQAVKILED 132
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++CD+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LT CY+LVQGNTV+AMG FK
Sbjct: 133 GVECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQGNTVSAMGQFKN 192
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRIV DC++N +HP+YHIK LM+K+EL KDP LA ENWDRFLPKFKK+N K+K
Sbjct: 193 LKEVRRIVIDCLKN-IHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKQNQKKKPTA 251
Query: 182 SKEK-------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQ 228
S + K YTPFPPP QPSKID LESGEYFL R K+ + +K KQ
Sbjct: 252 STSEAAPVPAKKQKPKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRAKKQAEEAKKLAKQ 311
Query: 229 AEKTAENKRKRDAAFIPPEEPS---RQNSCEAE 258
AE + R AF+PP E + R+ E E
Sbjct: 312 AEHKERREADRAKAFVPPTEDAGGKRKRDAEGE 344
>gi|255715898|ref|XP_002554230.1| 90S preribosome/SSU processome component KRR1 [Lachancea
thermotolerans CBS 6340]
gi|238935613|emb|CAR23793.1| KLTH0F00506p [Lachancea thermotolerans CBS 6340]
Length = 332
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 162/256 (63%), Positives = 203/256 (79%), Gaps = 4/256 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTR+T DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRRTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DTACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-- 179
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV +KK
Sbjct: 180 LKEVRRVVEDCMRN-IHPIYHIKELMIKRELAKRPDLAEEDWSRFLPMFKKRNVARKKPK 238
Query: 180 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K KE K YTPFPP QP KID +ESGEYFL++++KE+KK +E++ +QAEK E ++
Sbjct: 239 NIKPKENKVYTPFPPAQQPRKIDLQIESGEYFLTKKEKEAKKLEERKREQAEKQVEKNKE 298
Query: 239 RDAAFIPPEEPSRQNS 254
R ++ P E + S
Sbjct: 299 RAKDYVAPIEKGYEGS 314
>gi|440790291|gb|ELR11574.1| KH domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 406
Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 173/308 (56%), Positives = 233/308 (75%), Gaps = 9/308 (2%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
ALK+ G+ C LNL+EGSMTV TTRKT DPY+I+KARD+I+LL+RSVP PQA+++L D++
Sbjct: 81 ALKDVGIDCTLNLIEGSMTVRTTRKTWDPYMILKARDMIKLLARSVPFPQAVRVLGDDVA 140
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CD+IKIG +V NKERFVKRRQ L+GPN +TLKA+E+LT CY+LVQGNTV+ MG +KGLKQ
Sbjct: 141 CDVIKIGGMVHNKERFVKRRQRLIGPNGATLKAIELLTECYVLVQGNTVSVMGPYKGLKQ 200
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK- 183
VR IVEDCM N +HP+Y+IK LM+K+EL KDP LA ENWDRFLPKFKK NVK+K K K
Sbjct: 201 VRNIVEDCMNN-IHPIYNIKALMIKRELAKDPQLATENWDRFLPKFKKNNVKKKAAKPKR 259
Query: 184 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 243
EKK YTPFPP QPSK+D LESGEY+L+E +K+ +K +EK +K+ E + K +R+ AF
Sbjct: 260 EKKEYTPFPPAQQPSKLDMQLESGEYWLTEAEKKKQKDKEKAQKKWEAKMQKKAEREKAF 319
Query: 244 IPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASG----EK 299
+ P+E ++ + E+ T ++AA +K++ RK++ A+ E+++ S +
Sbjct: 320 VAPKEEPKKKEAQKEETTMELAA---KVKQQHANKRKREGAKQAKAEDFVLGSSSSKVDA 376
Query: 300 PSKKKKSK 307
P+ KK+ K
Sbjct: 377 PAAKKQKK 384
>gi|325187444|emb|CCA21982.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 408
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/249 (61%), Positives = 200/249 (80%), Gaps = 2/249 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+LL+RS+P QA++IL
Sbjct: 105 IVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKLLARSIPVNQAVEILK 164
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CYILVQGNTVAAMGS++
Sbjct: 165 DDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCYILVQGNTVAAMGSYQ 224
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ VR IVEDC N +HP+Y++K LM+K+EL KD AL NENWDRFLP+FKKKNV++KK
Sbjct: 225 GLRSVRNIVEDCFAN-IHPIYNVKRLMIKRELAKDEALRNENWDRFLPQFKKKNVQRKKP 283
Query: 181 KSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK+ + E + K ++
Sbjct: 284 KDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREKKASKEEVIQQRKSEK 343
Query: 240 DAAFIPPEE 248
A F+ P +
Sbjct: 344 KAGFVAPSD 352
>gi|310792085|gb|EFQ27612.1| ribosomal RNA assembly protein KRR1 [Glomerella graminicola M1.001]
Length = 324
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 198/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTKALEKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKER+VKRRQ ++GPN STLKALE+LT YILVQG+TV+ MG FK
Sbjct: 118 DGVACDIIKIRNLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + Q+
Sbjct: 178 GLKEVRRVVEDCMAN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSQRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E
Sbjct: 237 PLKVTDKSKKVYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERMEQQKQKKEERL 296
Query: 237 RKRDAAFIPPEE 248
R+R+ F+PPEE
Sbjct: 297 REREKEFVPPEE 308
>gi|325187445|emb|CCA21983.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 417
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/249 (61%), Positives = 200/249 (80%), Gaps = 2/249 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+LL+RS+P QA++IL
Sbjct: 114 IVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKLLARSIPVNQAVEILK 173
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CYILVQGNTVAAMGS++
Sbjct: 174 DDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCYILVQGNTVAAMGSYQ 233
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ VR IVEDC N +HP+Y++K LM+K+EL KD AL NENWDRFLP+FKKKNV++KK
Sbjct: 234 GLRSVRNIVEDCFAN-IHPIYNVKRLMIKRELAKDEALRNENWDRFLPQFKKKNVQRKKP 292
Query: 181 KSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK+ + E + K ++
Sbjct: 293 KDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREKKASKEEVIQQRKSEK 352
Query: 240 DAAFIPPEE 248
A F+ P +
Sbjct: 353 KAGFVAPSD 361
>gi|325187446|emb|CCA21984.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 377
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/249 (61%), Positives = 200/249 (80%), Gaps = 2/249 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+LL+RS+P QA++IL
Sbjct: 74 IVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKLLARSIPVNQAVEILK 133
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CYILVQGNTVAAMGS++
Sbjct: 134 DDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCYILVQGNTVAAMGSYQ 193
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ VR IVEDC N +HP+Y++K LM+K+EL KD AL NENWDRFLP+FKKKNV++KK
Sbjct: 194 GLRSVRNIVEDCFAN-IHPIYNVKRLMIKRELAKDEALRNENWDRFLPQFKKKNVQRKKP 252
Query: 181 KSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK+ + E + K ++
Sbjct: 253 KDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREKKASKEEVIQQRKSEK 312
Query: 240 DAAFIPPEE 248
A F+ P +
Sbjct: 313 KAGFVAPSD 321
>gi|409050127|gb|EKM59604.1| hypothetical protein PHACADRAFT_191975 [Phanerochaete carnosa
HHB-10118-sp]
Length = 390
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/274 (56%), Positives = 202/274 (73%), Gaps = 28/274 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +G++C L+L+ GSM+V TTR+T DPYII+KARD+I+LL+R V QA+KILDD
Sbjct: 76 VTKALETHGIACTLDLIHGSMSVRTTRRTYDPYIILKARDMIKLLARGVNIGQAVKILDD 135
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +KG
Sbjct: 136 AIACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKG 195
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKK 179
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDPALA E+WDRFLP+F+KK++K +K
Sbjct: 196 LKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPALATESWDRFLPQFRKKHLKTSEKT 254
Query: 180 VKSKE-------------------------KKPYTPFPPPPQPSKIDKLLESGEYFLSER 214
K E KK YTPFPPP QP K+D LESGEYFL +
Sbjct: 255 AKKNEKLAEKNTARETAGLPPIKLTKEEKRKKVYTPFPPPQQPRKVDVQLESGEYFLKSK 314
Query: 215 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
+KE+++ + ++EKQ E TAE + KR AF+ P E
Sbjct: 315 EKEAREARRRKEKQEEVTAEKQAKRAEAFVAPAE 348
>gi|400593186|gb|EJP61181.1| rRNA assembly protein Mis3, putative [Beauveria bassiana ARSEF
2860]
Length = 320
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/255 (59%), Positives = 198/255 (77%), Gaps = 5/255 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL++ G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 LITKALEKNGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI NLV NK+RFVKRRQ ++GP+ STLKALE+LT YILV GNTV+ MG +K
Sbjct: 118 DGVACDVIKIRNLVGNKDRFVKRRQRILGPDGSTLKALELLTETYILVHGNTVSVMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK+VRR+VEDCM N +HP+Y+IK LM+K+EL KDP L NE+WDRFLP FK+K + +++
Sbjct: 178 GLKEVRRVVEDCMAN-IHPIYYIKELMIKRELAKDPELKNESWDRFLPNFKRKTLSRRRT 236
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
+ K KK YTPFPP P+ SK+DK +ESGEYFLS++ K+ E+ EKQ + E
Sbjct: 237 PHNITDKTKKVYTPFPPAPEKSKVDKQIESGEYFLSKQAKQQAARTERLEKQKLRKTEKA 296
Query: 237 RKRDAAFIPPEEPSR 251
++R+A F+PPEE R
Sbjct: 297 KEREADFVPPEEGER 311
>gi|307106027|gb|EFN54274.1| hypothetical protein CHLNCDRAFT_58322 [Chlorella variabilis]
Length = 424
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/248 (66%), Positives = 205/248 (82%), Gaps = 7/248 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V ALKE G++CELNLVEGSMTV TTRKT DP+II+KARDLI+LL+RS A+K+L+D
Sbjct: 82 VTKALKEQGIACELNLVEGSMTVRTTRKTYDPFIILKARDLIKLLARS-----ALKVLED 136
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+QCD+IKIG +VRNKE+FVKRRQ L+GPN +TLKALE+LTGCYILVQGNTV+AMG +KG
Sbjct: 137 EVQCDVIKIGGIVRNKEKFVKRRQRLIGPNGATLKALELLTGCYILVQGNTVSAMGDYKG 196
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQVRRIVEDC++N +HP+YHIK LM+K+EL KDPALA ENW+RFLP FKKKNV++KK K
Sbjct: 197 LKQVRRIVEDCVRN-VHPIYHIKTLMIKRELAKDPALAEENWERFLPNFKKKNVQRKKPK 255
Query: 182 S-KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+E+K YTPFPPP PSK D +LESGEYFLS +K ++ + +QA + E +R+R+
Sbjct: 256 KVRERKDYTPFPPPQPPSKEDLMLESGEYFLSAEQKAARAAAAQATRQAARVEERQRQRE 315
Query: 241 AAFIPPEE 248
AAF P E
Sbjct: 316 AAFQAPAE 323
>gi|296420562|ref|XP_002839838.1| 90S preribosome/SSU processome component KRR1 [Tuber melanosporum
Mel28]
gi|295636044|emb|CAZ84029.1| unnamed protein product [Tuber melanosporum]
Length = 344
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 202/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ L+++ ++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQAIKIL+
Sbjct: 58 LITRTLEKHHIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPVPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKIGNLVRNKERFVKRRQ ++GP STLKALE+LTGCYILVQG+TV+AMG +K
Sbjct: 118 DGVACDIIKIGNLVRNKERFVKRRQRILGPGGSTLKALELLTGCYILVQGSTVSAMGGYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV----K 176
GLK+VRR+VE CM N +HP+YHIK LM+K+EL+KDP L NENWDRFLP+FKK+ + K
Sbjct: 178 GLKEVRRVVEGCMDN-IHPIYHIKELMIKRELQKDPELVNENWDRFLPQFKKRTLSKRKK 236
Query: 177 QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
+K+ K KK YTPFPP P+ SKID +ESGEYFLS++ KE E++EK+ EK E K
Sbjct: 237 PRKITDKSKKTYTPFPPAPEKSKIDLQIESGEYFLSKQSKERAARDEREEKRKEKKEEKK 296
Query: 237 RKRDAAFIPPEE 248
++R+ F+PP E
Sbjct: 297 KEREKDFVPPLE 308
>gi|363747734|ref|XP_003644085.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887717|gb|AET37268.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
Length = 336
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/258 (60%), Positives = 205/258 (79%), Gaps = 2/258 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++CELNLVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D
Sbjct: 60 VTRALDKHHLACELNLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DVACDVIKIGNFSSNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKV 180
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LA+++W RFLP FKK+N+ ++K
Sbjct: 180 LKEVRRVVEDCMKN-VHPIYHIKELMIKRELAKKPELADQDWSRFLPMFKKRNIARKKPK 238
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KEKK YTPFPP P K+D +E+GEYFLS+ +K+ KK +E + +Q EK E ++R
Sbjct: 239 KIKEKKVYTPFPPAQLPRKVDLEIETGEYFLSKNEKKMKKLEEHRNRQTEKQLEKAKERA 298
Query: 241 AAFIPPEEPSRQNSCEAE 258
+I P+E +N+ ++
Sbjct: 299 EDYIAPDEKEYKNALNSQ 316
>gi|346319385|gb|EGX88987.1| rRNA assembly protein Mis3, putative [Cordyceps militaris CM01]
Length = 363
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/252 (59%), Positives = 194/252 (76%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL++ G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILD
Sbjct: 100 LITKALEKTGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILD 159
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD++KI NLV NK RFVKRRQ ++GP STLKALE+LT YILV GNTV+ MG +K
Sbjct: 160 DGVACDVVKIRNLVGNKVRFVKRRQRILGPEGSTLKALELLTETYILVHGNTVSVMGPYK 219
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK+VRRI+EDCM N +HP+YHIK LM+K+EL KDP L NE+WDRFLP F++K + +++
Sbjct: 220 GLKEVRRIIEDCMAN-IHPIYHIKELMIKRELAKDPELKNESWDRFLPNFRRKTLSKRRT 278
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
+ K KK YTPFPP P+ SK+DK +E+GEYFL ++ K E+QE+Q E+ E
Sbjct: 279 PHAITDKTKKTYTPFPPAPEKSKVDKQIETGEYFLGKQAKLQAARAERQEQQKERKVEKA 338
Query: 237 RKRDAAFIPPEE 248
++R A F+PPEE
Sbjct: 339 KERAADFVPPEE 350
>gi|154273703|ref|XP_001537703.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
capsulatus NAm1]
gi|150415311|gb|EDN10664.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus NAm1]
Length = 334
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 203/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL
Sbjct: 40 MITKALEKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQ 99
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILVQGNTV+AMG +K
Sbjct: 100 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYK 159
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 160 GLKEIRRVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRK 218
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K
Sbjct: 219 PFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKK 278
Query: 237 RKRDAAFIPPEE 248
++ + F+PP+E
Sbjct: 279 KELEKDFVPPKE 290
>gi|307214181|gb|EFN89298.1| KRR1 small subunit processome component-like protein [Harpegnathos
saltator]
Length = 342
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 154/255 (60%), Positives = 202/255 (79%), Gaps = 3/255 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL+E+ ++ EL+LVEGSMTV TTRKT DPYII+KARD+I+LLSRSVP QA+K+L
Sbjct: 59 LIQKALEEHAITAELDLVEGSMTVKTTRKTWDPYIIIKARDMIKLLSRSVPYEQAMKVLQ 118
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ DIIKI +L+R+KE+FVKRRQ L+GPN STLKA+E+LT CY+LVQG TVAA+G +K
Sbjct: 119 DEISADIIKISSLIRDKEKFVKRRQRLIGPNGSTLKAIELLTNCYVLVQGQTVAALGPYK 178
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QK 178
GL+QVRRI ED M+N +HP+Y+IK LM+K+EL KDP L NENWDRFLPKF KN+ ++
Sbjct: 179 GLQQVRRIAEDTMKN-IHPIYNIKALMIKRELAKDPKLTNENWDRFLPKFNNKNINKRKQ 237
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KEKKPYT FPP PQ SK+DK + +GEYFL+E +K +K+ +E+ + E T + +
Sbjct: 238 PRKKKEKKPYTTFPPLPQESKLDKQIATGEYFLNEEQKRAKRKKEQDARHEEATKRRQER 297
Query: 239 RDAAFIPPEEPSRQN 253
R AF+PPEE +N
Sbjct: 298 RAQAFVPPEEKPVEN 312
>gi|169774963|ref|XP_001821949.1| 90S preribosome/SSU processome component KRR1 [Aspergillus oryzae
RIB40]
gi|83769812|dbj|BAE59947.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/250 (62%), Positives = 195/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+
Sbjct: 58 LVTRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI + VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+AMG +K
Sbjct: 118 DGVACDIIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VR++V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRKVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRT 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ + +E EKQ K E
Sbjct: 237 PFKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRAQKEELMEKQRVKREEKM 296
Query: 237 RKRDAAFIPP 246
++R AF+PP
Sbjct: 297 KERAKAFVPP 306
>gi|238496401|ref|XP_002379436.1| 90S preribosome/SSU processome component KRR1 [Aspergillus flavus
NRRL3357]
gi|220694316|gb|EED50660.1| rRNA assembly protein Mis3, putative [Aspergillus flavus NRRL3357]
gi|391868875|gb|EIT78084.1| rRNA processing protein [Aspergillus oryzae 3.042]
Length = 361
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/250 (62%), Positives = 195/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+
Sbjct: 58 LVTRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPVQQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI + VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+AMG +K
Sbjct: 118 DGVACDIIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VR++V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEVRKVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRT 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ + +E EKQ K E
Sbjct: 237 PFKVTDKSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRAQKEELMEKQRVKREEKM 296
Query: 237 RKRDAAFIPP 246
++R AF+PP
Sbjct: 297 KERAKAFVPP 306
>gi|301119295|ref|XP_002907375.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
gi|262105887|gb|EEY63939.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
Length = 395
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 165/303 (54%), Positives = 224/303 (73%), Gaps = 12/303 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL + +SCELNLVEGSMTV TTRKT DPYI++KARDLI+LL+RS+P QA+KILD
Sbjct: 86 IVTKALDAHKISCELNLVEGSMTVRTTRKTTDPYIVLKARDLIKLLARSIPVNQAVKILD 145
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++QCDIIKIG LVRNKERFVKRRQ LVGP+ +TLKA+E+LT CY+LVQGNTV+AMGS+
Sbjct: 146 DDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGSYH 205
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK-QKK 179
GL+ +R+IVEDC N +HP+Y++K LM+K+EL KDP L +ENW+RFLP FKK+NV+ +K
Sbjct: 206 GLRNLRKIVEDCFAN-VHPIYNVKRLMIKRELAKDPKLKDENWERFLPTFKKQNVQTKKP 264
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K +EKK YTPFPP P SK+DK +ESGEYF+ E ++++ K +K E + + + K +
Sbjct: 265 KKVREKKDYTPFPPAPTASKVDKEIESGEYFMKEHERKAMKKAKKHEDKLQVLQKRKADK 324
Query: 240 DAAFIPPEEPS-----RQNSCEAEDKTNDVAAMAKSLKEK--AKKLRKQKFAENINPEEY 292
A + P E ++ EA+++ N A ++LK+K +K K A ++N +Y
Sbjct: 325 MAEYAAPSEKETSKKRKKQKAEAQEE-NKRATSVEALKQKFLNQKTSDSKTAASVN--DY 381
Query: 293 IAA 295
+A
Sbjct: 382 LAV 384
>gi|46123651|ref|XP_386379.1| hypothetical protein FG06203.1 [Gibberella zeae PH-1]
Length = 426
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 152/252 (60%), Positives = 196/252 (77%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL++ G++C L+L+EGSM V T+ +T DP I+KARDLI+LL+RSVPAPQAIKIL+
Sbjct: 164 LITRALEKLGIACSLDLIEGSMVVKTSLRTHDPSSILKARDLIKLLARSVPAPQAIKILE 223
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI N V +KERFVKRRQ L+GPN +TLKALE+LT YILV GNTV+ MG +K
Sbjct: 224 DGIACDIIKIRNQVASKERFVKRRQRLLGPNGTTLKALELLTKTYILVHGNTVSVMGPYK 283
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK M+K+EL KDP LANE+WDRFLP FK+K + Q+
Sbjct: 284 GLKEIRRVVEDCMAN-IHPIYHIKEAMIKQELAKDPELANESWDRFLPNFKRKTLSQRRV 342
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +ESGEYFL + KE +E++EKQ ++ E
Sbjct: 343 PHKVNDKAKKVYTPFPPAPEKSKVDKQIESGEYFLGKVGKERAAQEERREKQNKRKEEKA 402
Query: 237 RKRDAAFIPPEE 248
++R+A FI PEE
Sbjct: 403 KEREADFIAPEE 414
>gi|68484447|ref|XP_713834.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|68484528|ref|XP_713795.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435308|gb|EAK94692.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435349|gb|EAK94732.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|238878458|gb|EEQ42096.1| ribosomal RNA assembly protein mis3 [Candida albicans WO-1]
Length = 358
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 203/255 (79%), Gaps = 4/255 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DIACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL K+PALANE+W RFLP FKK+NV +KK
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKT 238
Query: 182 SK---EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
SK EKK YTPFPP QP KID +ESGEYFL +++KE KK QEK+ KQ E + +++
Sbjct: 239 SKKSVEKKVYTPFPPAQQPRKIDLQIESGEYFLGKKEKELKKLQEKRSKQEEVSETKRQE 298
Query: 239 RDAAFIPPEEPSRQN 253
R F PEE +N
Sbjct: 299 RAKDFEAPEEEVYEN 313
>gi|241949981|ref|XP_002417713.1| 90S preribosome/SSU processome component KRR1 [Candida dubliniensis
CD36]
gi|223641051|emb|CAX45425.1| ribosomal RNA assembly protein, putative [Candida dubliniensis
CD36]
Length = 370
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 203/255 (79%), Gaps = 4/255 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DIACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL K+PALANE+W RFLP FKK+NV +KK
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKT 238
Query: 182 SK---EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
SK EKK YTPFPP QP KID +ESGEYFL +++KE KK QEK+ KQ E + +++
Sbjct: 239 SKKSIEKKVYTPFPPAQQPRKIDLQIESGEYFLGKKEKELKKLQEKRSKQEEVSETKRQE 298
Query: 239 RDAAFIPPEEPSRQN 253
R F PEE +N
Sbjct: 299 RAKDFEAPEEEVYEN 313
>gi|240282060|gb|EER45563.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H143]
gi|325088198|gb|EGC41508.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H88]
Length = 351
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 203/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL
Sbjct: 58 MITKALEKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQ 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILVQGNTV+AMG +K
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEIRRVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K
Sbjct: 237 PFKVTDKRKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKK 296
Query: 237 RKRDAAFIPPEE 248
++ + F+PP+E
Sbjct: 297 KELEKDFVPPKE 308
>gi|225559135|gb|EEH07418.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus G186AR]
Length = 352
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 203/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL
Sbjct: 58 MITKALEKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQ 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILVQGNTV+AMG +K
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEIRRVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K
Sbjct: 237 PFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKK 296
Query: 237 RKRDAAFIPPEE 248
++ + F+PP+E
Sbjct: 297 KELEKDFVPPKE 308
>gi|406865668|gb|EKD18709.1| ribosomal RNA assembly protein KRR1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 350
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 149/228 (65%), Positives = 187/228 (82%), Gaps = 5/228 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ +L++YG++C L+LVEGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LITRSLEKYGIACSLDLVEGSMTVKTTRKTFDPAAVLNARDLIKLLARSVPAPQAVKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDIIKI NLVRNKE+FVKRRQ ++GPN STLKALE+LT CY+LVQGNTVAAMG +K
Sbjct: 118 DGMACDIIKIRNLVRNKEKFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+N+ ++
Sbjct: 178 GLKEVRRIIEDCMNN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 224
KV K KK YTPFPP + SKIDK LESGEYF+ + +E + +E+
Sbjct: 237 PLKVTDKSKKVYTPFPPKQEESKIDKQLESGEYFMGKMARERAQREER 284
>gi|395330640|gb|EJF63023.1| hypothetical protein DICSQDRAFT_56643 [Dichomitus squalens LYAD-421
SS1]
Length = 386
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 154/275 (56%), Positives = 200/275 (72%), Gaps = 29/275 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +G++C L+L+ GSM V TTRKT DPYII+KARD+I+LL+R V QA+KIL+D
Sbjct: 72 VTQALDPHGIACTLDLIHGSMAVRTTRKTYDPYIILKARDMIKLLARGVAVAQAVKILND 131
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQGNTV MG +KG
Sbjct: 132 DVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGNTVGVMGPYKG 191
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----- 176
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLPKF+K+++K
Sbjct: 192 LKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKT 250
Query: 177 -QKKVKSKEKKP----------------------YTPFPPPPQPSKIDKLLESGEYFLSE 213
+K + +EK YTPFPPP QP K+D LESGEYFL
Sbjct: 251 ARKNERVQEKNEARKAAGLPTLEEAKKERKEKKVYTPFPPPQQPRKVDLQLESGEYFLKA 310
Query: 214 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
+KE+++ ++++EKQ E TAE + KR AF+ PEE
Sbjct: 311 HQKEAREAKKRKEKQEEVTAERQAKRAEAFVAPEE 345
>gi|239614293|gb|EEQ91280.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ER-3]
gi|327356334|gb|EGE85191.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 203/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA++IL+
Sbjct: 58 MITRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALQILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+L+ YILVQGNTV+ MG +K
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQGNTVSVMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEIRRVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K
Sbjct: 237 PFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERSKKEEMVERQREKREEKK 296
Query: 237 RKRDAAFIPPEE 248
++ + F+PP+E
Sbjct: 297 KELEKDFVPPKE 308
>gi|392568645|gb|EIW61819.1| hypothetical protein TRAVEDRAFT_143946 [Trametes versicolor
FP-101664 SS1]
Length = 393
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 153/275 (55%), Positives = 200/275 (72%), Gaps = 29/275 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +G+SC L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KI+ D
Sbjct: 73 VTQALDTHGISCTLDLIHGSMSVRTTRKTYDPYIILKARDMIKLLARGVAIGQAVKIMSD 132
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKIGN+VRNKERF+KRRQ ++GP+ STLKA+E+LT CY+LVQGNTV+ MG +KG
Sbjct: 133 DIACDIIKIGNVVRNKERFIKRRQRIIGPDGSTLKAIELLTQCYVLVQGNTVSVMGPYKG 192
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKK 179
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLPKF+K+++K +K
Sbjct: 193 LKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKT 251
Query: 180 VKSKEK--------------------------KPYTPFPPPPQPSKIDKLLESGEYFLSE 213
K E+ K YTPFPPP QP K+D LESGEYFL
Sbjct: 252 AKKNERIQEKDESRKAAGLPTVEEAKKEKKEKKVYTPFPPPQQPRKVDLQLESGEYFLKA 311
Query: 214 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
+KE+++ ++++EKQ E TAE + KR F+ PEE
Sbjct: 312 HEKEARENRKRKEKQEEVTAERRAKRAEVFVAPEE 346
>gi|427780601|gb|JAA55752.1| Putative rrna processing protein [Rhipicephalus pulchellus]
Length = 318
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/251 (61%), Positives = 203/251 (80%), Gaps = 3/251 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L E+GV+ EL+++EGSMTV+TTRK DPYII+KARD+I+LLSRSVP QAI++L+
Sbjct: 51 LVKKTLSEHGVNAELDVIEGSMTVTTTRKMWDPYIILKARDMIKLLSRSVPYEQAIRVLE 110
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDI+KIG LVRN+ERF+KRRQ L+GPN +TLKA+E+LT CY+LVQGNTVAA+G +K
Sbjct: 111 DGVGCDIVKIGRLVRNRERFIKRRQRLLGPNGTTLKAIELLTNCYVLVQGNTVAALGPYK 170
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ VR+IVED M+N +HPVY+IK LM+K+EL KDP L NENWDRFLP FK + + ++K
Sbjct: 171 GLQHVRKIVEDTMKN-IHPVYNIKALMIKRELAKDPKLRNENWDRFLPHFKAQTLSKRKK 229
Query: 181 KSKE--KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ K YTPFPPP SK+DK L SGEYFL ER++++KK EK++ +AE A+ + +
Sbjct: 230 PKKQRVKGEYTPFPPPQPESKMDKELASGEYFLKERERKAKKKHEKEQSKAEAEAKRQER 289
Query: 239 RDAAFIPPEEP 249
R+ +F PPEEP
Sbjct: 290 RNKSFQPPEEP 300
>gi|320592210|gb|EFX04649.1| rRNA assembly protein [Grosmannia clavigera kw1407]
Length = 327
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/251 (60%), Positives = 193/251 (76%), Gaps = 5/251 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++G++CEL+LV G+MTV TTR+T DP I+ ARDLIRLLSRSVPAPQA+++L++
Sbjct: 59 VTRALQKHGIACELDLVTGTMTVKTTRRTYDPAAILNARDLIRLLSRSVPAPQALRVLEE 118
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ DIIKI +LVRNKERFVKRRQ ++GP STLKALEILT YILVQG TVA MG F+G
Sbjct: 119 GVAADIIKIRSLVRNKERFVKRRQRILGPGGSTLKALEILTETYILVQGGTVAVMGPFRG 178
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--- 178
LK VRR+VEDCM N +HP+Y IK LMVK+EL KDP LA E+WDRFLP FKK+ + ++
Sbjct: 179 LKDVRRVVEDCMAN-VHPIYMIKELMVKRELAKDPQLATESWDRFLPNFKKRTLSKRRVP 237
Query: 179 -KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 237
KV K KPYT FPP P+ SK+D +E+GEYFLS+ K+ E+QEK +K + KR
Sbjct: 238 LKVTDKAAKPYTAFPPAPEKSKVDLQIETGEYFLSKEAKKRATETERQEKAHQKKEDKKR 297
Query: 238 KRDAAFIPPEE 248
+R+ F+PPEE
Sbjct: 298 EREKDFVPPEE 308
>gi|146415907|ref|XP_001483923.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
gi|146391048|gb|EDK39206.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
Length = 340
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/253 (60%), Positives = 200/253 (79%), Gaps = 2/253 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C+L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+K+L D
Sbjct: 60 VTKALDKHNIACQLDLVEGSMTVKTTRKTYDPAIIIKARDLIKLLARSVPFPQAVKVLQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DVACDVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTNCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK
Sbjct: 180 LKEVRRVVEDCMKN-VHPIYHIKELMIKQELSKKPELANEDWSRFLPMFKKRNVARKKKA 238
Query: 182 SKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
+ +KK YTPFPP P K+D +ESGEYFL +R+K+ Q+K++KQ E + + +++
Sbjct: 239 APDKKKVYTPFPPAQTPRKVDLQIESGEYFLGKREKKQNDLQKKRDKQEEVSEQKNKEKL 298
Query: 241 AAFIPPEEPSRQN 253
+ PEE +N
Sbjct: 299 RGYEAPEEQLHEN 311
>gi|353239326|emb|CCA71242.1| probable KRR1-required for 40S ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 350
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/282 (54%), Positives = 204/282 (72%), Gaps = 34/282 (12%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KILDD
Sbjct: 55 VTRALEPHGIACTLDLINGSMSVRTTRKTFDPYIILKARDMIKLLARGVAVGQAVKILDD 114
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LTGCY+LVQGNTV+AMG +K
Sbjct: 115 AVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNTVSAMGPYKS 174
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKK 179
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLPKF+K+++ +K
Sbjct: 175 LKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPKLATESWDRFLPKFRKRHLTSAEKS 233
Query: 180 VKSKE-------------------------------KKPYTPFPPPPQPSKIDKLLESGE 208
K +E KK YTPFPPP P K+D LESGE
Sbjct: 234 AKKREAAATKAEARQAAAASSGQPMDVDVHEPPKKKKKVYTPFPPPQLPRKVDLQLESGE 293
Query: 209 YFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 250
YFL +KE+++ +++++QAE TA+++ KR A++ PEE +
Sbjct: 294 YFLKSSEKEAREAIKRKQQQAEVTAQHQAKRAEAYVAPEETA 335
>gi|342320728|gb|EGU12667.1| Hypothetical Protein RTG_01217 [Rhodotorula glutinis ATCC 204091]
Length = 394
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 203/280 (72%), Gaps = 31/280 (11%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++G+ L+LVEGSMTV TTRKT DPYII+KARD+I+LL+RSVP PQA++IL+D
Sbjct: 96 VTAALEKHGIVATLDLVEGSMTVKTTRKTHDPYIILKARDMIKLLARSVPFPQAVRILED 155
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CDIIKIGN++RN ERFVKRRQ ++GP STLKA+E+LT CY+LVQGNTVAAMG KG
Sbjct: 156 GMDCDIIKIGNIIRNTERFVKRRQRILGPGGSTLKAIELLTQCYVLVQGNTVAAMGGHKG 215
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN------- 174
LK+VR+IV DCM+N +HP+YHIK LM+K+EL KDP LA+ENWDRFLPKF+++
Sbjct: 216 LKEVRKIVIDCMKN-IHPIYHIKELMIKRELAKDPKLASENWDRFLPKFRRRREKKRGPP 274
Query: 175 -----------VKQKKVKSKEKK-----------PYTPFPPPPQPSKIDKLLESGEYFLS 212
V S E + PYTPFPP QPSKID LESGEYFL
Sbjct: 275 AAEGSGVNGIPVNGDASTSAEAQPPAKKQKKEKKPYTPFPPAQQPSKIDLQLESGEYFLK 334
Query: 213 ERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE-PSR 251
R+K+ ++ ++++ KQAE TA + +R AF+ P+E P+R
Sbjct: 335 PREKQQREEEKRKAKQAEATAARQEERAKAFVAPDEAPAR 374
>gi|302697271|ref|XP_003038314.1| 90S preribosome/SSU processome component KRR1 [Schizophyllum
commune H4-8]
gi|300112011|gb|EFJ03412.1| hypothetical protein SCHCODRAFT_46498 [Schizophyllum commune H4-8]
Length = 399
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/274 (54%), Positives = 200/274 (72%), Gaps = 28/274 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +GV+C L+LV GSM V TTRKT DPYII+KARD+I+LL+R V QA+KILDD
Sbjct: 68 VTRALDHHGVACTLDLVHGSMAVRTTRKTYDPYIILKARDMIKLLARGVAVAQAVKILDD 127
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K
Sbjct: 128 NMACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKS 187
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LANE+WDRFLP F+K+++K +
Sbjct: 188 LKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLANESWDRFLPAFRKRHLKTSEKT 246
Query: 182 SKEKK---------------------------PYTPFPPPPQPSKIDKLLESGEYFLSER 214
+K+ + YTPFPPP QP K+D LESGEYFL +
Sbjct: 247 AKKNERAAAKGEARAAAGLDPEKVEKEKSKKKVYTPFPPPQQPRKVDLQLESGEYFLKPK 306
Query: 215 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
++E+K+ Q+++EKQA+ A+ + +R+AA++ P E
Sbjct: 307 EREAKEAQKRKEKQADVAAQRQAEREAAYVAPAE 340
>gi|241111418|ref|XP_002399277.1| rRNA processing protein, putative [Ixodes scapularis]
gi|215492943|gb|EEC02584.1| rRNA processing protein, putative [Ixodes scapularis]
Length = 352
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/267 (58%), Positives = 206/267 (77%), Gaps = 6/267 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L E+GV+ EL+++EGSMTVSTT+K DPYII+KARD+I+LLSRSVP QAI++L+
Sbjct: 64 LVKKTLSEHGVNGELDVIEGSMTVSTTKKMWDPYIILKARDMIKLLSRSVPYEQAIRVLE 123
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG++VRN+ERFVKRRQ LVGPN +TLKA+E+LT CY+LVQGNTVAA+G +K
Sbjct: 124 DDVGCDIIKIGSMVRNRERFVKRRQRLVGPNGTTLKAIELLTNCYVLVQGNTVAALGPYK 183
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ VR+I E+ M+N +HP+Y+IK LM+K+EL KDP L +ENW+RFLPKFK K + ++K
Sbjct: 184 GLQHVRKIAEETMKN-IHPIYNIKALMIKRELAKDPKLKDENWERFLPKFKSKTLSKRKK 242
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K + YTPFPP SK+DK L SGEYFL ER+K+ KK Q+K EK+ E + +
Sbjct: 243 PKKRRTKGEYTPFPPEQPESKMDKELASGEYFLKEREKKDKKMQQKNEKKVEAEVRRQER 302
Query: 239 RDAAFIPPEEP---SRQNSCEAEDKTN 262
R+ F PPEEP S++ EAE +
Sbjct: 303 RNKPFEPPEEPKYVSKKRPAEAESAVD 329
>gi|448082190|ref|XP_004195077.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359376499|emb|CCE87081.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 364
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/258 (59%), Positives = 201/258 (77%), Gaps = 3/258 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V L ++ + C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRELSKHHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD++KIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CY+LVQG+TV+AMG +KG
Sbjct: 120 DVACDVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQGSTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VRR+VEDCM N +HP+YHIK LM+K+EL +P LA+E+W RFLP+FKK+NV +KK+K
Sbjct: 180 LKVVRRVVEDCMNN-IHPIYHIKELMLKQELASNPDLAHEDWSRFLPQFKKRNVARKKLK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+K+ YTPFPPP QP K+D +ESGEYFL ++++ +K +EK+E Q E + K+ R
Sbjct: 239 QSKKEKKVYTPFPPPQQPRKVDLQMESGEYFLGKKERSAKALEEKREHQKEASETRKQDR 298
Query: 240 DAAFIPPEEPSRQNSCEA 257
F PEE + +N A
Sbjct: 299 MKDFEAPEEETYKNELVA 316
>gi|156550594|ref|XP_001604019.1| PREDICTED: KRR1 small subunit processome component homolog [Nasonia
vitripennis]
Length = 339
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 151/250 (60%), Positives = 197/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V EL+L+EGSMTV +TRKT DPYII+KARD+I+L+SRSVP QA+++L
Sbjct: 59 LVQKALSEHHVKAELDLIEGSMTVKSTRKTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQ 118
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI + VRNKE+FVKRRQ L+GPN TLK++E+LT CY+LVQG TVAA+G +K
Sbjct: 119 DDIGADIIKISSFVRNKEKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVAALGPYK 178
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GL+QVRRI ED M+N +HP+Y+IK LM+K+EL KDP L +ENW+RFLPKF KNV ++
Sbjct: 179 GLQQVRRIAEDTMKN-IHPIYNIKALMIKRELAKDPKLKSENWERFLPKFNSKNVSKRKQ 237
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
KEKKPYTPFPPP Q SKIDK L +GEYFL E +K +KK +E++ + E T + + +
Sbjct: 238 PKNKKEKKPYTPFPPPQQESKIDKQLATGEYFLKEEQKRAKKRKEQEARHEEATKKREER 297
Query: 239 RDAAFIPPEE 248
R AF+PPEE
Sbjct: 298 RAQAFVPPEE 307
>gi|302309082|ref|NP_986293.2| 90S preribosome/SSU processome component KRR1 [Ashbya gossypii ATCC
10895]
gi|299790936|gb|AAS54117.2| AFR744Wp [Ashbya gossypii ATCC 10895]
gi|374109527|gb|AEY98433.1| FAFR744Wp [Ashbya gossypii FDAG1]
Length = 343
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 161/249 (64%), Positives = 206/249 (82%), Gaps = 2/249 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++ ++CELNLVEGSM+V TTRKT DP II+KARDLI+LL+RSVP PQAIKIL D
Sbjct: 60 VTRALEKHHIACELNLVEGSMSVKTTRKTYDPAIILKARDLIKLLARSVPLPQAIKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN+V +KERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DIACDVIKIGNIVASKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKV 180
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV ++K
Sbjct: 180 LKEVRRVVEDCMRN-IHPIYHIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVARKKPK 238
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KEKK YTPFPP P K+D +E+GEYFLS+++KE+KK + ++ +QAEK +E +++R
Sbjct: 239 KIKEKKVYTPFPPAQLPRKVDLEIETGEYFLSKKEKEAKKLEARRAQQAEKQSEKEKERA 298
Query: 241 AAFIPPEEP 249
+I P EP
Sbjct: 299 KDYIAPAEP 307
>gi|327272856|ref|XP_003221200.1| PREDICTED: KRR1 small subunit processome component homolog [Anolis
carolinensis]
Length = 385
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 200/250 (80%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTVSTT+KT DPYII++ARDLI+LL+RSVP QA++IL+
Sbjct: 72 LVQKALNEHHINAALDLIEGSMTVSTTKKTFDPYIIIRARDLIKLLARSVPFEQAVRILE 131
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG LVRN+ERF+KRRQ L+GPN STLKALE+LT CYILVQGNTV+A+G F
Sbjct: 132 DDVACDIIKIGTLVRNRERFIKRRQRLIGPNGSTLKALELLTSCYILVQGNTVSALGPFN 191
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +NW+RFLPKFK KN+ ++K
Sbjct: 192 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELSKDPELRAQNWERFLPKFKHKNLNKRKE 250
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S++DK L SGE+FL E +K+ K+ +E + KQA ++ + +
Sbjct: 251 PKKKNVKKEYTPFPPPQPESQVDKELASGEFFLKESQKKRKRVEEIKAKQAAAISKRQEE 310
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 311 RNKAFIPPKE 320
>gi|342883805|gb|EGU84227.1| hypothetical protein FOXB_05184 [Fusarium oxysporum Fo5176]
Length = 320
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 152/252 (60%), Positives = 201/252 (79%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 LVTRALEKHGIACTLDLVEGSMAVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI L +KE FVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +K
Sbjct: 118 DGVACDVIKIRGLCGSKESFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCMQN +HP+YHIK +M+K+EL KDP LANE+WDRFLP FKK+++ +
Sbjct: 178 GLKELRRVVEDCMQN-VHPIYHIKEMMIKRELAKDPELANESWDRFLPNFKKRSLSHRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +E+GEYFL++ K+ +E++EKQ+++ E
Sbjct: 237 PHKVTDKTKKTYTPFPPAPEKSKVDKQIETGEYFLAKGDKKRALHEERKEKQSKRKEEKA 296
Query: 237 RKRDAAFIPPEE 248
++R+A F+PPEE
Sbjct: 297 KEREAEFVPPEE 308
>gi|449550042|gb|EMD41007.1| hypothetical protein CERSUDRAFT_103362 [Ceriporiopsis subvermispora
B]
Length = 395
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 152/275 (55%), Positives = 200/275 (72%), Gaps = 29/275 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+R V QA+KILDD
Sbjct: 72 VTKALESHGIACTLDLIHGSMSVRTTRKTYDPYIILKARDMVKLLARGVAIGQAVKILDD 131
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +KG
Sbjct: 132 TVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKG 191
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKK 179
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLPKF+K+++K +K
Sbjct: 192 LKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKT 250
Query: 180 VKSKE--------------------------KKPYTPFPPPPQPSKIDKLLESGEYFLSE 213
K E KK YTPFPP QP K+D LESGEYFL
Sbjct: 251 AKKNERIQEKNEARQAAGLPTIQEAQKEKPAKKVYTPFPPAQQPRKVDLQLESGEYFLKA 310
Query: 214 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
+K++++ ++++EKQ E TAE + KR AF+ P E
Sbjct: 311 HEKQAREDRKRKEKQEEVTAERRAKRAEAFVAPTE 345
>gi|349806193|gb|AEQ18569.1| hypothetical protein [Hymenochirus curtipes]
Length = 271
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/249 (60%), Positives = 197/249 (79%), Gaps = 2/249 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E V EL+L+EGSMTVSTT+KT DPY I++ARDLI+LL+RSVP QA++IL
Sbjct: 6 LVQKALGESFVKAELDLIEGSMTVSTTKKTYDPYSIIRARDLIKLLARSVPFDQAVRILQ 65
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 66 DDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFN 125
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKK 179
GLK++R++V + M+N +HP+Y+IK LM+K+EL KDP L ++W+RFLP FK KN+ K+K+
Sbjct: 126 GLKEIRKVVLETMKN-IHPIYNIKALMIKRELAKDPELRTKSWERFLPTFKHKNISKRKE 184
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE + + +R
Sbjct: 185 PKKSVKREYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEIKAKQAEAVTKRQEER 244
Query: 240 DAAFIPPEE 248
+ AFIPP+E
Sbjct: 245 NKAFIPPKE 253
>gi|406604799|emb|CCH43784.1| Ribosomal RNA assembly protein KRR1 [Wickerhamomyces ciferrii]
Length = 355
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 156/260 (60%), Positives = 200/260 (76%), Gaps = 9/260 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEG+M+V TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALDKHHIACTLDLVEGAMSVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF KRRQ LVGP+ +TLKALE+LT CYILVQGNTV+AMG F+G
Sbjct: 120 DIACDVIKIGNFVTNKDRFTKRRQRLVGPSGNTLKALELLTKCYILVQGNTVSAMGPFRG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL+K P LANE+W R+LP+FKKKNV +KK K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELQKKPELANEDWSRYLPQFKKKNVARKKPK 238
Query: 182 S--------KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 233
KEKK YTPFPP P K+D +ESGEYFL++++K K+ Q K+EKQ E
Sbjct: 239 QVRDDQEKKKEKKVYTPFPPAQLPRKVDLQIESGEYFLNKKEKRVKELQAKKEKQEEHKI 298
Query: 234 ENKRKRDAAFIPPEEPSRQN 253
+R ++ PEE +N
Sbjct: 299 TRDEERAKDYVAPEEDKYEN 318
>gi|260786115|ref|XP_002588104.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
gi|229273262|gb|EEN44115.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
Length = 370
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 217/285 (76%), Gaps = 10/285 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L E+GV L+++EGSMTV+TTRKT DP+I+++ARDLI+LL+RSVP QA++ILD
Sbjct: 65 LVKKKLAEFGVRAVLDVIEGSMTVATTRKTWDPFIVIRARDLIKLLARSVPYEQAVRILD 124
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG +VRNKERFVKRRQ L+GPN TLKA+E+LT CY+LVQGNTVAA+G+ K
Sbjct: 125 DDVFCDIIKIGGMVRNKERFVKRRQRLIGPNGQTLKAVELLTQCYVLVQGNTVAAIGTHK 184
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GL+ VR+IV D M+N +HPVY+IK +M+K+EL KDP L NE+WDRFLPKF+ K + ++K
Sbjct: 185 GLRDVRKIVVDTMKN-IHPVYNIKAMMIKRELAKDPVLKNESWDRFLPKFQHKQLSKRKQ 243
Query: 180 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K +EKK YTPFPPP SK+D+ L +GE+F+ E++K+ +K Q++Q ++ E + +
Sbjct: 244 PFKKREKKEYTPFPPPQPQSKVDQELATGEFFMKEKEKKQRKRQQQQVREVEAKKAQQER 303
Query: 239 RDAAFIPPEEPSRQ------NSCEAEDKTNDVAAMAKSLKEKAKK 277
R+ AFIPPEEP+ + +S E+ K DV A+ + + KK
Sbjct: 304 RNKAFIPPEEPAHKVKAHSTSSAESNSKV-DVEALKRKINRSGKK 347
>gi|340712796|ref|XP_003394941.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
terrestris]
Length = 340
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 144/254 (56%), Positives = 200/254 (78%), Gaps = 3/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ +L+E+ + EL+L+EGSM+V TTRKT DPYII+KARD+++L+SRSVP QA+++L
Sbjct: 60 LIQKSLEEHAIKAELDLIEGSMSVKTTRKTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI + VRN+E+FVKRRQ L+GP TLK++E+LT CY++VQG TVAA+G +K
Sbjct: 120 DDIGSDIIKISSFVRNREKFVKRRQRLIGPKGCTLKSIELLTNCYVVVQGQTVAALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL QVRRIVED M+N +HP+Y+IK LM+K+EL KDP L NENW+RFLPKF KN+ ++K
Sbjct: 180 GLIQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPKFNSKNISKRKQ 238
Query: 181 --KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
KEKKPYTPFPPP Q SK+DK++ SGEYFL E +K +K+ +E+ + E + + +
Sbjct: 239 PKNRKEKKPYTPFPPPQQESKVDKMIASGEYFLKEEQKIAKRKREQDIRHQEAEKKRQER 298
Query: 239 RDAAFIPPEEPSRQ 252
R AF+PPEE S++
Sbjct: 299 RAEAFVPPEEQSKE 312
>gi|383847545|ref|XP_003699413.1| PREDICTED: KRR1 small subunit processome component homolog
[Megachile rotundata]
Length = 338
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/250 (60%), Positives = 198/250 (79%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V EL+LVEGSMTV TTRKT DPYII+KARD+I+L+SRSVP QA+++L
Sbjct: 60 LVQKALAEHAVKAELDLVEGSMTVKTTRKTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI + VRN+E+FVKRRQ L+GPN TLK++E+LT CY+LVQG TVAA+G +K
Sbjct: 120 DDIGSDIIKISSFVRNREKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVAALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQK 178
GL+QVRRIVED M+N +HP+Y+IK LM+K+EL KDP L NENW+RFLP+F KN+ +++
Sbjct: 180 GLQQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPRFSSKNISKRKQ 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KEKKPYTPFPPP SKIDK++ SGEYFL E +K +K +E++ + E + + +
Sbjct: 239 PKKKKEKKPYTPFPPPQTESKIDKMIASGEYFLKEEQKRAKLKKEQEARHQEAEKKRQER 298
Query: 239 RDAAFIPPEE 248
R AFIPPEE
Sbjct: 299 RAQAFIPPEE 308
>gi|320163346|gb|EFW40245.1| ribosomal RNA assembly protein mis3 [Capsaspora owczarzaki ATCC
30864]
Length = 363
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/250 (65%), Positives = 207/250 (82%), Gaps = 2/250 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + G++CEL+L+EGSMTV TT+KT DP+II+KARDLI+LL+RSVP QA+KIL+D
Sbjct: 75 VTKALDDVGIACELDLIEGSMTVRTTKKTFDPFIILKARDLIKLLARSVPLAQALKILED 134
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKIGN+VRNKERFVKRRQ L+GPN +TLKA+E+LT CY++VQGNTVAAMG +KG
Sbjct: 135 DVVCDIIKIGNIVRNKERFVKRRQRLLGPNGATLKAIELLTDCYVMVQGNTVAAMGGYKG 194
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRIVEDC+ N +HP+Y+IK LM+K+EL KDPALA E+WDRFLP+FKKKNVKQKK K
Sbjct: 195 LKEVRRIVEDCLHN-VHPIYNIKTLMIKRELAKDPALATESWDRFLPQFKKKNVKQKKPK 253
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
+K+ TPFPP PQPSKID LESGEYFL E + ++ QE++E+QAE + +R+
Sbjct: 254 ITKKE-KTPFPPLPQPSKIDLQLESGEYFLKEDDRRAQLRQEREERQAEAAEAKRSQREK 312
Query: 242 AFIPPEEPSR 251
AF P EP+
Sbjct: 313 AFEAPAEPAH 322
>gi|261204337|ref|XP_002629382.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
dermatitidis SLH14081]
gi|239587167|gb|EEQ69810.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis
SLH14081]
Length = 352
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/252 (61%), Positives = 202/252 (80%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPA QA++IL+
Sbjct: 58 MITRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPALQALQILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+L+ YILVQGNTV+ MG +K
Sbjct: 118 DDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQGNTVSVMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++
Sbjct: 178 GLKEIRRVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K
Sbjct: 237 PFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERSKKEEMVERQREKREEKK 296
Query: 237 RKRDAAFIPPEE 248
++ + F+PP+E
Sbjct: 297 KELEKDFVPPKE 308
>gi|187469407|gb|AAI67117.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 353
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/250 (60%), Positives = 198/250 (79%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL
Sbjct: 74 LVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQ 133
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 134 DDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 193
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV ++K
Sbjct: 194 GLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKRKE 252
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE + + +
Sbjct: 253 PKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKRQEE 312
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 313 RNKAFIPPKE 322
>gi|429849292|gb|ELA24695.1| rRNA assembly protein [Colletotrichum gloeosporioides Nara gc5]
Length = 323
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/252 (61%), Positives = 199/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L+++G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKILD
Sbjct: 58 LVTKSLEKHGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI +LVRNKER+VKRRQ ++GPN STLKALE+LT YILVQG+TV+ MG +K
Sbjct: 118 DGVACDVIKIRSLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP LA+E+WDRFLP FKKK + ++
Sbjct: 178 GLKEVRRVVEDCMNN-IHPIYHIKELMIKRELAKDPELASESWDRFLPNFKKKTLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E
Sbjct: 237 PLKVTDKAKKTYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERIEQQKQKKEEKL 296
Query: 237 RKRDAAFIPPEE 248
R+R+ F+PPEE
Sbjct: 297 REREKDFVPPEE 308
>gi|451998791|gb|EMD91254.1| hypothetical protein COCHEDRAFT_1135572 [Cochliobolus
heterostrophus C5]
Length = 344
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/250 (63%), Positives = 195/250 (78%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+ AL+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 FITQALQRLGIGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVA MG +K
Sbjct: 118 DDVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVACMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLKQVRRI+ED M N +HP+Y IK LM+KKEL KDP LANE+WDRFLP FKK+++ ++
Sbjct: 178 GLKQVRRIIEDTMHN-IHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRI 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KKPYTPFPPP + SK+D +ESGEYFL + KE K +E++EK EK +
Sbjct: 237 PHKVNDKSKKPYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKAQEEREEKMKEKMDAKR 296
Query: 237 RKRDAAFIPP 246
++R A ++ P
Sbjct: 297 KERMAEYVAP 306
>gi|301621305|ref|XP_002939993.1| PREDICTED: KRR1 small subunit processome component homolog [Xenopus
(Silurana) tropicalis]
gi|159155304|gb|AAI54861.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 373
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/250 (60%), Positives = 198/250 (79%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL
Sbjct: 74 LVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQ 133
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 134 DDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 193
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV ++K
Sbjct: 194 GLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKRKE 252
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE + + +
Sbjct: 253 PKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKRQEE 312
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 313 RNKAFIPPKE 322
>gi|350408959|ref|XP_003488565.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
impatiens]
Length = 340
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/254 (56%), Positives = 199/254 (78%), Gaps = 3/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ +L E+ + EL+L+EGSM+V TTRKT DPYII+KARD+++L+SRSVP QA+++L
Sbjct: 60 LIQKSLDEHAIKAELDLIEGSMSVKTTRKTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI + VRN+E+FVKRRQ L+GP TLK++E+LT CY++VQG TVAA+G +K
Sbjct: 120 DDIGSDIIKISSFVRNREKFVKRRQRLIGPKGCTLKSIELLTNCYVVVQGQTVAALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL QVRRIVED M+N +HP+Y+IK LM+K+EL KDP L NENW+RFLPKF KN+ ++K
Sbjct: 180 GLIQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPKFNSKNISKRKQ 238
Query: 181 --KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
KEKKPYTPFPPP Q SK+DK++ SGEYFL E +K +K+ +E+ + E + + +
Sbjct: 239 PRNKKEKKPYTPFPPPQQESKVDKMIASGEYFLKEEQKIAKRKREQDIRHQEAEKKRQER 298
Query: 239 RDAAFIPPEEPSRQ 252
R AF+PPEE S++
Sbjct: 299 RAEAFVPPEEQSKE 312
>gi|113197682|gb|AAI21623.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 371
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/250 (60%), Positives = 198/250 (79%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL
Sbjct: 72 LVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQ 131
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 132 DDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 191
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV ++K
Sbjct: 192 GLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKRKE 250
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE + + +
Sbjct: 251 PKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKRQEE 310
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 311 RNKAFIPPKE 320
>gi|428169969|gb|EKX38898.1| hypothetical protein GUITHDRAFT_158464 [Guillardia theta CCMP2712]
Length = 356
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/281 (57%), Positives = 209/281 (74%), Gaps = 17/281 (6%)
Query: 6 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 65
L GV+CELNLVEGSMTV TTRKT DPYII+K+RDLI+LL+RSVPA QA+KIL D++QC
Sbjct: 84 LDRVGVACELNLVEGSMTVKTTRKTWDPYIILKSRDLIKLLARSVPAQQALKILQDDVQC 143
Query: 66 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
DIIKI +VRNK+RFVKRRQ L+GPN STLKALE+LT NTV+ MGSF+G+KQ
Sbjct: 144 DIIKISGMVRNKDRFVKRRQRLLGPNGSTLKALELLTK-------NTVSVMGSFQGIKQA 196
Query: 126 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK--SK 183
R+++ DCM N +HP+Y+IK LM+++EL KD L NE+WDRFLPKFKK+NVK KK K +
Sbjct: 197 RKVIVDCMNN-IHPIYNIKALMIRRELSKDEKLKNESWDRFLPKFKKRNVKTKKPKETAA 255
Query: 184 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 243
+KK YTPFPPP QPSK+D LESGE+FL+E +++ K E+ EK + +N + + A F
Sbjct: 256 KKKEYTPFPPPQQPSKVDLELESGEFFLNEAQRKEKTKAERAEKNKQIKEQNDKDKAAVF 315
Query: 244 IPPEEPSRQNSC----EAEDKTNDVAAM---AKSLKEKAKK 277
+PP+E ++ E+K ND+ A+ +LKEK +K
Sbjct: 316 VPPKEKKKKRKSGEDEGQEEKKNDMKALKEQVANLKEKVRK 356
>gi|402083986|gb|EJT79004.1| ribosomal RNA assembly protein KRR1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 320
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/254 (62%), Positives = 196/254 (77%), Gaps = 5/254 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+ +G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 LVTKALERHGIATTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDI+KI NLV NKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+ MG FK
Sbjct: 118 DGVACDIVKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTSTYILVHGNTVSVMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VEDCM N +HP+Y IK LMVK+EL KDPALANE+WDRFLP FKK+++ +
Sbjct: 178 GLKEVRRVVEDCMAN-IHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YT FPP P+ SK+D +ESGEYFL + K+ E+QEK E+ E K
Sbjct: 237 PHKVTDKSKKTYTAFPPAPEKSKVDLQIESGEYFLGKEAKQRAAEAERQEKAKERKEERK 296
Query: 237 RKRDAAFIPPEEPS 250
R+R+ F+PPEEP
Sbjct: 297 REREKDFVPPEEPG 310
>gi|403214636|emb|CCK69136.1| hypothetical protein KNAG_0C00230 [Kazachstania naganishii CBS
8797]
Length = 349
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/249 (61%), Positives = 196/249 (78%), Gaps = 3/249 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL +
Sbjct: 60 VTKALDSHHIACTLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQE 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CD+IKIGN+V NKERFVKRRQ LVGP+ +TLKALE+LT CYILVQGNTV+AMG +KG
Sbjct: 120 DTACDVIKIGNIVTNKERFVKRRQRLVGPDGNTLKALELLTKCYILVQGNTVSAMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK++RR+VEDCM N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 180 LKELRRVVEDCMHN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+K+ YTPFPP P K+D +ESGEYFL++++K+ KK +E++E QAEK +R
Sbjct: 239 KIKKEKKVYTPFPPAQLPRKVDLEIESGEYFLNKKEKQFKKLEERKEIQAEKQRVKDEER 298
Query: 240 DAAFIPPEE 248
+ P+E
Sbjct: 299 RKDYTAPKE 307
>gi|408398153|gb|EKJ77287.1| hypothetical protein FPSE_02562 [Fusarium pseudograminearum CS3096]
Length = 320
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/252 (59%), Positives = 195/252 (77%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL++ G++C L+LVEG+MTV T+ KT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 58 LVTRALEKLGIACTLDLVEGAMTVKTSLKTSDPSAILKARDLIKLLARSVPAPQALKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLV + ++FVKRRQ L+G N +TLK LE+LT YILV GNTV+AMG +K
Sbjct: 118 DGIACDIIKIRNLVGSAQKFVKRRQRLLGHNGATLKTLELLTKTYILVHGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK++RR+VEDCM N +HP+YHIK M+K+EL KDP LANE+WDRFLP FK K + Q+
Sbjct: 178 GLKEIRRVVEDCMVN-IHPIYHIKEAMIKQELAKDPKLANESWDRFLPNFKSKALSQRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +ESGEYFL + KE +E++EKQ ++ E
Sbjct: 237 PHKVNDKAKKVYTPFPPAPEKSKVDKQIESGEYFLGKVGKERAAQEERREKQNKRKEEKA 296
Query: 237 RKRDAAFIPPEE 248
++R+A FI PEE
Sbjct: 297 KEREADFIAPEE 308
>gi|50557280|ref|XP_506048.1| 90S preribosome/SSU processome component KRR1 [Yarrowia lipolytica
CLIB122]
gi|49651918|emb|CAG78861.1| YALI0F30393p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/247 (59%), Positives = 191/247 (77%), Gaps = 1/247 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KIL+D
Sbjct: 60 VTKALDQKGIACVLDLVEGSMTVKTTRKTYDPYAIMNARDLIKLLARSVPFPQAVKILED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CD+IKIGN NKERFVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+ MG +
Sbjct: 120 GIACDVIKIGNFTSNKERFVKRRQRLLGPNGNTLKALELLTQCYILVQGNTVSVMGPYTH 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+K +RR++EDCM N +HP+YHIK LM+K+EL K P LA E+W RFLP+FKK+NV +KK K
Sbjct: 180 MKTLRRVIEDCMMN-IHPIYHIKELMIKRELAKRPELAEEDWSRFLPQFKKRNVARKKPK 238
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
+ + K T FPP P K+D +ESGE+FL +K + +EK+++QA ++AE + +R+
Sbjct: 239 TIKNKVRTAFPPAQLPRKVDLQIESGEFFLGADEKRRRADEEKRQQQAARSAEKQAQREL 298
Query: 242 AFIPPEE 248
AFI P+E
Sbjct: 299 AFIAPDE 305
>gi|148223443|ref|NP_001084288.1| KRR1, small subunit (SSU) processome component, homolog [Xenopus
laevis]
gi|47937628|gb|AAH72210.1| HRB2 protein [Xenopus laevis]
Length = 372
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/250 (60%), Positives = 197/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL + V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL
Sbjct: 73 LVQKALNDSFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQ 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 133 DDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFG 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV ++
Sbjct: 193 GLKEVRKVVSDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKRKE 251
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KK YTPFPPP S+IDK L SGE+FL E K KK +E + KQAE + + +
Sbjct: 252 PKKKNVKKAYTPFPPPQPESQIDKELASGEFFLKESHKRRKKLEEVKAKQAEAVTKRQEE 311
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 312 RNKAFIPPKE 321
>gi|270005203|gb|EFA01651.1| hypothetical protein TcasGA2_TC007222 [Tribolium castaneum]
Length = 537
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 171/300 (57%), Positives = 218/300 (72%), Gaps = 11/300 (3%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
LKE+ ++ EL++VEG MTV TTRKT DPYII+KARD+I+L+SRSVP QA ++L+D++
Sbjct: 83 TLKEHHINAELDVVEGCMTVRTTRKTWDPYIIIKARDMIKLMSRSVPFEQAKRVLNDDVG 142
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CDIIKIG + RNKE+FVKRRQ L+GPN TLK++E+LT CY+LVQG TV+A+G +KGL+Q
Sbjct: 143 CDIIKIGKITRNKEKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVSALGPYKGLQQ 202
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKS 182
VR+IVED M+N MHP+Y+IK LM+KKEL KDP L NENWDRFLP+F KN+ ++ K
Sbjct: 203 VRKIVEDTMKN-MHPIYNIKALMIKKELAKDPKLKNENWDRFLPRFVNKNISKRKQPKKK 261
Query: 183 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 242
KEKKPYTPFPPP SKIDK L SGEYFL++ +K KK +EK EK A + + KR+ A
Sbjct: 262 KEKKPYTPFPPPQTESKIDKELASGEYFLNKEQKRQKKQKEKNEKHAAAAKKREEKRNEA 321
Query: 243 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 302
F+PPEEPS + D+A SLKEK K RK + +E IA G P +
Sbjct: 322 FVPPEEPSTSKQSPNVNTKVDIA----SLKEKIMKARK----DEDESQERIAVKGGFPVR 373
>gi|452836496|gb|EME38440.1| hypothetical protein DOTSEDRAFT_92479 [Dothistroma septosporum
NZE10]
Length = 349
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/252 (61%), Positives = 196/252 (77%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LLSRSVPAPQAIKIL+
Sbjct: 64 MITRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLSRSVPAPQAIKILE 123
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D CD+IKI LVRNK+RFVKRRQ ++GPN STLKALE+LT YILVQGNTV+ MG +K
Sbjct: 124 DGTACDVIKIRGLVRNKDRFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGGYK 183
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
LK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP L NENW+RFLP FKK+N+ +++
Sbjct: 184 SLKEVRRVVEDCMAN-IHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRV 242
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
V K KK YTPFPPP + SK+D +ESGEYFL+ KE +++++ EK E K
Sbjct: 243 PRVVNDKSKKVYTPFPPPQEQSKVDLQIESGEYFLNNAAKERATKEKREDAMKEKMEERK 302
Query: 237 RKRDAAFIPPEE 248
+KR+ AF P+E
Sbjct: 303 KKREEAFKAPKE 314
>gi|448086732|ref|XP_004196171.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359377593|emb|CCE85976.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 372
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/254 (59%), Positives = 199/254 (78%), Gaps = 3/254 (1%)
Query: 6 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 65
L +Y + C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL +++ C
Sbjct: 64 LSKYHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSVPFPQAVKILQEDVAC 123
Query: 66 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
D++KIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CY+LVQG+TV+AMG +KGLK V
Sbjct: 124 DVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQGSTVSAMGPYKGLKVV 183
Query: 126 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 185
RR+VEDCM N +HP+YHIK LM+K+EL +P +A+E+W RFLP+FKK+NV +KK+K +K
Sbjct: 184 RRVVEDCMNN-VHPIYHIKELMLKQELASNPDIAHEDWSRFLPQFKKRNVARKKLKQSKK 242
Query: 186 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 243
+ YTPFPPP QP K+D +ESGEYFL ++++ +K + K+E Q E + K+ R F
Sbjct: 243 EKKVYTPFPPPQQPRKVDLQMESGEYFLGKKERSAKALETKREHQKEASETRKQDRMKDF 302
Query: 244 IPPEEPSRQNSCEA 257
PEE + +N A
Sbjct: 303 EAPEEENYRNELVA 316
>gi|258577481|ref|XP_002542922.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
gi|237903188|gb|EEP77589.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
Length = 368
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/313 (55%), Positives = 223/313 (71%), Gaps = 35/313 (11%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP PQA+KIL+
Sbjct: 80 IITRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPTPQALKILE 139
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG FK
Sbjct: 140 DGVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTETYLLVQGNTVAAMGPFK 199
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK+VRR+VEDCM N +HP+YH+K LM+K+EL KDP LANE+WDRFLP FKK+ + ++K
Sbjct: 200 GLKEVRRVVEDCMNN-IHPIYHVKELMIKRELAKDPKLANESWDRFLPHFKKRTLNKRKQ 258
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
V K KK YTPFPPP + SK+D +ESGEYFLS++ KE + +E E+Q +K E
Sbjct: 259 PFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQAKERARKEEVMERQRQKRDEKM 318
Query: 237 RKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYI--A 294
++ D F+PP+E + E+ KK RK+ PE+
Sbjct: 319 KELDKDFVPPKEDT---------------------GEQKKKKRKR-------PEDMTDKV 350
Query: 295 ASGEKPSKKKKSK 307
+ GEK SKK+KSK
Sbjct: 351 SDGEKLSKKRKSK 363
>gi|390600873|gb|EIN10267.1| ribosomal RNA assembly protein mis3 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 386
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/274 (55%), Positives = 195/274 (71%), Gaps = 28/274 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +G++C L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KIL D
Sbjct: 71 VTAALDSHGIACTLDLIHGSMSVKTTRKTYDPYIILKARDMIKLLARGVAVGQAVKILQD 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K
Sbjct: 131 DMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTRCYVLVQGSTVSVMGPYKS 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV- 180
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E WDRFLP+F++K++K +
Sbjct: 191 LKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPKLATEPWDRFLPQFRRKHLKTSEKT 249
Query: 181 --------------------------KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 214
K K KK YTPFPP P K+D LESGEYFL
Sbjct: 250 ARKNAAVEAKKEARAAAGLDPEEMAKKDKAKKVYTPFPPAQLPRKVDLQLESGEYFLKPH 309
Query: 215 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
+KE+K+ + ++EKQAE TA+ + +R AF+ P E
Sbjct: 310 EKEAKEAKRRKEKQAEVTAKRRAERQEAFVAPAE 343
>gi|320583574|gb|EFW97787.1| ribosomal RNA assembly protein mis3 [Ogataea parapolymorpha DL-1]
Length = 356
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/253 (60%), Positives = 197/253 (77%), Gaps = 2/253 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALNKHHIACTLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ C+IIKIGN+V NKERF+KRRQ L+GPN +TLKALE+LTGCY+LVQGNTVA MG KG
Sbjct: 120 DTACEIIKIGNIVANKERFIKRRQRLIGPNGNTLKALELLTGCYMLVQGNTVAVMGPHKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKV 180
LK +RR++EDCM N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV ++K
Sbjct: 180 LKVLRRVIEDCMHN-IHPIYHIKELMIKRELAKRPELAEEDWSRFLPNFKKRNVARKKPK 238
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K +EKK YTPFPP P KID +ESGEYFL +++K +K+ QEK+EKQ E +++R
Sbjct: 239 KVREKKEYTPFPPVQTPRKIDLQIESGEYFLGKKEKRAKELQEKREKQEEMKELKEQERA 298
Query: 241 AAFIPPEEPSRQN 253
++ PEE R+N
Sbjct: 299 KDYVAPEEDVREN 311
>gi|395541221|ref|XP_003772545.1| PREDICTED: KRR1 small subunit processome component homolog
[Sarcophilus harrisii]
Length = 381
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 199/250 (79%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTVSTT+KT DPYII++ARDLI+LL+RSVP QAI+IL
Sbjct: 80 LVQKALHEHHINATLDLIEGSMTVSTTKKTFDPYIIIRARDLIKLLARSVPFEQAIRILQ 139
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 140 DDTACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSALGPFN 199
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L ++NW+RFLP+FK KN+ ++K
Sbjct: 200 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELSKDSELRSQNWERFLPQFKHKNLNKRKE 258
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL E +K+ ++ ++ + KQAE ++ + +
Sbjct: 259 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKESQKKQQRMEQIKAKQAEAISKRQTE 318
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 319 RNKAFIPPKE 328
>gi|300175390|emb|CBK20701.2| unnamed protein product [Blastocystis hominis]
Length = 327
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 150/250 (60%), Positives = 196/250 (78%), Gaps = 4/250 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V L ++G+ CEL+ +EG+MTV TTRKT+DPYII+KARDLI+LL+RSVP QAIKILDD
Sbjct: 77 VTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSVPFNQAIKILDD 136
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
MQCDIIKIG V K+RF+KRRQ LVGP +TLKA+E+LT CY+LVQGNTVA MGS++G
Sbjct: 137 NMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQGNTVAVMGSYQG 196
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN-VKQKKV 180
LK VRRI+ DCM+N +HP+Y IK LM+K+EL KDPAL NENWDRFLPKFKK+N + K
Sbjct: 197 LKTVRRIIIDCMKN-IHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKSSKTKK 255
Query: 181 KSKEKKPYTPFPPPPQ--PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
++K YTPFPP PSK+D +ESGEYFLSE++K+ ++ ++++ ++ K +++
Sbjct: 256 VVVKEKKYTPFPPENHITPSKVDLQIESGEYFLSEQQKKEREMEKRRMEKKRKAGIKEQE 315
Query: 239 RDAAFIPPEE 248
R F+PP+E
Sbjct: 316 RQKKFVPPKE 325
>gi|300121233|emb|CBK21614.2| unnamed protein product [Blastocystis hominis]
Length = 328
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 151/251 (60%), Positives = 195/251 (77%), Gaps = 5/251 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V L ++G+ CEL+ +EG+MTV TTRKT+DPYII+KARDLI+LL+RSVP QAIKILDD
Sbjct: 77 VTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSVPFNQAIKILDD 136
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
MQCDIIKIG V K+RF+KRRQ LVGP +TLKA+E+LT CY+LVQGNTVA MGS++G
Sbjct: 137 NMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQGNTVAVMGSYQG 196
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VRRI+ DCM+N +HP+Y IK LM+K+EL KDPAL NENWDRFLPKFKK+N K K
Sbjct: 197 LKTVRRIIIDCMKN-IHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKSSKTKK 255
Query: 182 SKEKKP--YTPFPPPPQ--PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 237
K+ YTPFPP PSK+D +ESGEYFLSE++K+ ++ ++++ ++ K ++
Sbjct: 256 VVVKEKNRYTPFPPENHITPSKVDLQIESGEYFLSEQQKKEREMEKRRMEKKRKAGIKEQ 315
Query: 238 KRDAAFIPPEE 248
+R F+PP+E
Sbjct: 316 ERQKKFVPPKE 326
>gi|358055242|dbj|GAA98750.1| hypothetical protein E5Q_05438 [Mixia osmundae IAM 14324]
Length = 355
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/273 (57%), Positives = 194/273 (71%), Gaps = 27/273 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V L ++G+ C L+LVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP PQAIKILDD
Sbjct: 84 VTSQLDKHGIGCTLDLVEGSMTVRTTRKTFDPYIILKARDLIKLLARSVPFPQAIKILDD 143
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIGN+VRNKERFVKRRQ ++GP STLKALE+LT CYILVQGNTVAAMG +KG
Sbjct: 144 SVACDIIKIGNIVRNKERFVKRRQRILGPGGSTLKALELLTNCYILVQGNTVAAMGPYKG 203
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVKQKKV 180
LK+VRR+V DC+ N +HP+YHIK +M+K+EL KDP LA E+W RFLP+F K+K K+ +V
Sbjct: 204 LKEVRRVVLDCLAN-VHPIYHIKEMMIKRELAKDPKLAEEDWSRFLPQFTKRKQKKRAEV 262
Query: 181 K-------SKEKKP------------------YTPFPPPPQPSKIDKLLESGEYFLSERK 215
+ E+ P YTPFPP QP KID LESGEYFL ++
Sbjct: 263 RPNGEGGNGYEEHPLESAAGKAPKKPKIIKKPYTPFPPAQQPRKIDLQLESGEYFLKPKE 322
Query: 216 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
++ K E +++ A+ K KR AF+ P E
Sbjct: 323 QKQKSKDELSKREEAARAQRKAKRAEAFVAPPE 355
>gi|170106401|ref|XP_001884412.1| 90S preribosome/SSU processome component KRR1 [Laccaria bicolor
S238N-H82]
gi|164640758|gb|EDR05022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 410
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/280 (53%), Positives = 199/280 (71%), Gaps = 29/280 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +GV+C L+LV GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KILDD
Sbjct: 85 VTRALDTHGVACTLDLVHGSMSVKTTRKTYDPYIILKARDMIKLLARGVAVSQAVKILDD 144
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIG LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K
Sbjct: 145 AVACDIIKIGTLVRNKERFVKRRQRIIGPDGSTLKAIELLTNCYVLVQGSTVSVMGPYKS 204
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKK 179
LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F+K+++K +K
Sbjct: 205 LKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKT 263
Query: 180 VKSKE--------------------------KKPYTPFPPPPQPSKIDKLLESGEYFLSE 213
K E KK YTPFPP QP K+D LESGEYFL
Sbjct: 264 AKKNEKLEGKKEAWKAAGMGAEEIAKKEKPAKKVYTPFPPAQQPRKVDLQLESGEYFLKA 323
Query: 214 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 253
++E+++ +++++KQAE T + + +R AFI P E + Q
Sbjct: 324 TEREAQETEKRKQKQAETTEKRRAERAEAFIAPVEKAEQT 363
>gi|91081317|ref|XP_969842.1| PREDICTED: similar to dribble CG4258-PA [Tribolium castaneum]
Length = 350
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 214/286 (74%), Gaps = 11/286 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMT----VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 56
+V+ LKE+ ++ EL++VEGSMT V TTRKT DPYII+KARD+I+L+SRSVP QA
Sbjct: 60 LVQKTLKEHHINAELDVVEGSMTGCMTVRTTRKTWDPYIIIKARDMIKLMSRSVPFEQAK 119
Query: 57 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 116
++L+D++ CDIIKIG + RNKE+FVKRRQ L+GPN TLK++E+LT CY+LVQG TV+A+
Sbjct: 120 RVLNDDVGCDIIKIGKITRNKEKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVSAL 179
Query: 117 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
G +KGL+QVR+IVED M+N MHP+Y+IK LM+KKEL KDP L NENWDRFLP+F KN+
Sbjct: 180 GPYKGLQQVRKIVEDTMKN-MHPIYNIKALMIKKELAKDPKLKNENWDRFLPRFVNKNIS 238
Query: 177 --QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 234
++ K KEKKPYTPFPPP SKIDK L SGEYFL++ +K KK +EK EK A +
Sbjct: 239 KRKQPKKKKEKKPYTPFPPPQTESKIDKELASGEYFLNKEQKRQKKQKEKNEKHAAAAKK 298
Query: 235 NKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRK 280
+ KR+ AF+PPEEPS + D+A SLKEK K RK
Sbjct: 299 REEKRNEAFVPPEEPSTSKQSPNVNTKVDIA----SLKEKIMKARK 340
>gi|156045189|ref|XP_001589150.1| 90S preribosome/SSU processome component KRR1 [Sclerotinia
sclerotiorum 1980 UF-70]
gi|154694178|gb|EDN93916.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 349
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 184/223 (82%), Gaps = 5/223 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ +L+++G++ L+L EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 LIMKSLEKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTV+AMG +K
Sbjct: 118 DGVACDVIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK++RRI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+FKK+N+ +++
Sbjct: 178 GLKEIRRIIEDCMAN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLSKRRV 236
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 219
V K KK YTPFPPP + SK+D +ESGEYFL ++ KE K
Sbjct: 237 PRNVTDKAKKVYTPFPPPQEKSKVDLQIESGEYFLGKQAKERK 279
>gi|390350177|ref|XP_786725.2| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Strongylocentrotus purpuratus]
Length = 352
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 214/285 (75%), Gaps = 6/285 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+G+ L+L+EGSMTV TTR+T DP+II+KARD+I+LL+RSVP QA++IL+
Sbjct: 51 LVQKTLSEHGIKANLDLIEGSMTVKTTRQTWDPFIIIKARDMIKLLARSVPFEQAMRILE 110
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ ++IKIG +VRN+ERFVKRRQ L+GPN STLKA+E+LT CYI+VQGNTV+A+G K
Sbjct: 111 DDVSAEVIKIGRMVRNRERFVKRRQRLIGPNGSTLKAIELLTNCYIMVQGNTVSAVGPHK 170
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ V +IV D + N +HP+Y+IK+LM+K+EL KD L +E+WDRFLPKF+ KN+K++K
Sbjct: 171 GLRDVNKIVTDTLNN-VHPIYNIKVLMIKRELMKDDKLKSESWDRFLPKFRTKNLKKRKR 229
Query: 181 KSK--EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K +KK YTPFPP +KIDK L +GEYFL E +K++K QEK+ KQAE + K K
Sbjct: 230 PQKIGKKKEYTPFPPQQPETKIDKELATGEYFLRENQKKAKVRQEKRIKQAEAEVKRKDK 289
Query: 239 RDAAFIPPEEPSRQNSCEA--EDKTNDVAAMAKSLKE-KAKKLRK 280
R+ FIPP+EP+ + A D DV A +K+ ++KK R+
Sbjct: 290 REKPFIPPKEPTISETKPAPKPDSKIDVNAFKAKIKQSQSKKFRQ 334
>gi|409082561|gb|EKM82919.1| hypothetical protein AGABI1DRAFT_82619 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 388
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/279 (54%), Positives = 200/279 (71%), Gaps = 33/279 (11%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+R V QA+KIL+D
Sbjct: 69 VTRALETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGVAVNQAVKILED 128
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+AMG +K
Sbjct: 129 DMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSAMGPYKS 188
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-- 179
LK+VRRIV DCM+N +HP+Y IK LM++KEL KDP LA+E WDRFLPKF+K+++K +
Sbjct: 189 LKEVRRIVLDCMKN-IHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKT 247
Query: 180 ------------------------------VKSKEKKPYTPFPPPPQPSKIDKLLESGEY 209
K K+KK YTPFPP QP KID LESGEY
Sbjct: 248 AKKNERLEARAEARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQQPRKIDLQLESGEY 307
Query: 210 FLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
FL R+KE+++ ++++Q E T + K++R AFI P E
Sbjct: 308 FLKAREKEAREVGRRKQEQLEMTTKRKKERAKAFIAPIE 346
>gi|299747151|ref|XP_001841248.2| 90S preribosome/SSU processome component KRR1 [Coprinopsis cinerea
okayama7#130]
gi|298407390|gb|EAU80543.2| ribosomal RNA assembly protein mis3 [Coprinopsis cinerea
okayama7#130]
Length = 392
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/297 (51%), Positives = 205/297 (69%), Gaps = 28/297 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +GV+C L+LV GSM+V TTRKT DPYII+KARD+I+L++R V QA+KIL D
Sbjct: 71 VTKALEVHGVACTLDLVHGSMSVRTTRKTYDPYIILKARDMIKLMARGVALNQAVKILQD 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG FK
Sbjct: 131 DMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTNCYVLVQGSTVSVMGPFKS 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F+K+++K +
Sbjct: 191 LKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKT 249
Query: 182 S---------------------------KEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 214
+ K+KK YTPFPPP P K+D LESGEYFL
Sbjct: 250 AKKNEKLKEKEEARKAAGLDPAEASKTEKKKKVYTPFPPPQLPRKVDLQLESGEYFLKAS 309
Query: 215 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSL 271
+K +K+ +++++KQ E T + K +R AF+ P E + E + + A M K +
Sbjct: 310 EKAAKEAEKRKQKQMEVTEQRKAERAEAFVAPAEQAAPTVEEKKKRKRAAAEMEKEM 366
>gi|453082814|gb|EMF10861.1| eukaryotic type KH-domain (KH-domain type I) [Mycosphaerella
populorum SO2202]
Length = 342
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/249 (59%), Positives = 192/249 (77%), Gaps = 5/249 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ AL++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVP +A+KIL+D
Sbjct: 59 ITKALEKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPLDEAMKILED 118
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CD+IKI +VRNKERFVKRRQ ++GPN STLKAL +LT YILVQGNTV+ MG +K
Sbjct: 119 GVACDVIKIRGMVRNKERFVKRRQRILGPNGSTLKALSLLTQTYILVQGNTVSIMGGYKN 178
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--- 178
LK+VRR+VEDCMQN +HP+YHIK LM+K+EL KDP L NENW+RFLP FKK+N+ ++
Sbjct: 179 LKEVRRVVEDCMQN-IHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRVP 237
Query: 179 -KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 237
KV K K+ YTPFPPP + SK+D +ESGEYFL++ K+ K + +++ +K E KR
Sbjct: 238 FKVNDKAKRVYTPFPPPQEKSKVDLQIESGEYFLNKAAKDRAKKERREDVMKDKMEERKR 297
Query: 238 KRDAAFIPP 246
KR+ AF P
Sbjct: 298 KREEAFDAP 306
>gi|426200426|gb|EKV50350.1| hypothetical protein AGABI2DRAFT_190677 [Agaricus bisporus var.
bisporus H97]
Length = 392
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/281 (53%), Positives = 201/281 (71%), Gaps = 33/281 (11%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+R V QA+KIL+D
Sbjct: 69 VTRALETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGVAVNQAVKILED 128
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+AMG +K
Sbjct: 129 DMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSAMGPYKS 188
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-- 179
LK+VRRIV DCM+N +HP+Y IK LM++KEL KDP LA+E WDRFLPKF+K+++K +
Sbjct: 189 LKEVRRIVLDCMKN-IHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKT 247
Query: 180 ------------------------------VKSKEKKPYTPFPPPPQPSKIDKLLESGEY 209
K K+KK YTPFPP QP KID LESGEY
Sbjct: 248 AKKNERLEARAEARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQQPRKIDLQLESGEY 307
Query: 210 FLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 250
FL R+KE+++ ++++Q E T + K++R AF+ P E +
Sbjct: 308 FLKAREKEAREVGRRKQEQLEMTNKRKKERAKAFVAPIETA 348
>gi|126339445|ref|XP_001371361.1| PREDICTED: KRR1 small subunit processome component homolog
[Monodelphis domestica]
Length = 383
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 198/250 (79%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSVP QAI+IL+
Sbjct: 80 LVQKALHEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVPFEQAIRILE 139
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 140 DNNACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSALGPFN 199
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L ++NW+RFLP+FK KN+ ++K
Sbjct: 200 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELSKDAELRSQNWERFLPQFKHKNLNKRKE 258
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL E +K+ +K ++ + KQAE ++ + +
Sbjct: 259 PKKKTVKKEYTPFPPPQPESRIDKELASGEYFLKESQKKQQKMEQIKAKQAEAVSKRQAE 318
Query: 239 RDAAFIPPEE 248
R+ AF+PP+E
Sbjct: 319 RNKAFVPPKE 328
>gi|154290221|ref|XP_001545709.1| 90S preribosome/SSU processome component KRR1 [Botryotinia
fuckeliana B05.10]
gi|347840709|emb|CCD55281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 349
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 186/228 (81%), Gaps = 5/228 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ +L+++G++ L+L EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 58 LIMKSLEKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILE 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTV+AMG +K
Sbjct: 118 DGVACDVIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVSAMGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK++RRI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+FKK+N+ +++
Sbjct: 178 GLKEIRRIIEDCMAN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLNKRRV 236
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 224
V K KK YTPFPP + SK+D +ESGEYFL ++ KE K +E+
Sbjct: 237 PRNVTDKSKKVYTPFPPAQEKSKVDLQIESGEYFLGKQAKERKVQEER 284
>gi|452823541|gb|EME30551.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Galdieria
sulphuraria]
Length = 350
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 151/271 (55%), Positives = 204/271 (75%), Gaps = 4/271 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V +L Y +SCEL+LV+G+M V TT KT DPYII KARDLI+LL+RSVP QA+KIL D
Sbjct: 71 VTKSLDTYSISCELDLVKGAMVVRTTAKTWDPYIIFKARDLIKLLARSVPVQQALKILRD 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+MQCDIIKI N RNKERFVKRRQ L+G N +TLKA+E+LT CY+LVQG+TVAAMGS+KG
Sbjct: 131 DMQCDIIKISNFTRNKERFVKRRQRLIGSNGATLKAIELLTQCYVLVQGSTVAAMGSYKG 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFL---PKFKKKNVKQK 178
LKQVRRIVEDCM+N +HP+Y+IK LM+K+EL KDP L+ E+WDRFL K K ++
Sbjct: 191 LKQVRRIVEDCMRN-IHPIYNIKTLMIKRELAKDPILSKESWDRFLPKFKKKNPKKKRKV 249
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K+ + PFPPP P KID +ESGEYFL E++K+ ++ QE+++++ EK E +++
Sbjct: 250 PKNTKKDESDNPFPPPQMPRKIDLEMESGEYFLHEKQKQLRQRQERKKREEEKQLEKRKQ 309
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAK 269
++ +IPP+E + +S + K +D ++ K
Sbjct: 310 KEREYIPPKEDNVNDSQVYKRKQSDNDSVRK 340
>gi|367012591|ref|XP_003680796.1| 90S preribosome/SSU processome component KRR1 [Torulaspora
delbrueckii]
gi|359748455|emb|CCE91585.1| hypothetical protein TDEL_0C06960 [Torulaspora delbrueckii]
Length = 350
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 160/259 (61%), Positives = 202/259 (77%), Gaps = 3/259 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL + ++C L+L+EGSMTV TTRKT DP II++ARDLI+LL+RSVP QA+KIL++
Sbjct: 60 VTRALNAHHIACVLDLMEGSMTVKTTRKTFDPAIILRARDLIKLLARSVPFAQAVKILEE 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN+V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG +KG
Sbjct: 120 DVACDVIKIGNVVANKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VED M+N +HP+Y IK LM+K+EL K P LA E+W RFLP FKK+NV +KK K
Sbjct: 180 LKEVRRVVEDTMRN-VHPIYQIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVARKKPK 238
Query: 182 --SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
EKK YTPFPP QP KID +ESGEYFLS+++KE K +E++EKQAEK E + R
Sbjct: 239 KIRAEKKVYTPFPPAQQPRKIDLEIESGEYFLSKKEKEINKLKERREKQAEKQEEKEEAR 298
Query: 240 DAAFIPPEEPSRQNSCEAE 258
+I P+E ++S E E
Sbjct: 299 SKDYIAPKEDVYKSSLEPE 317
>gi|332375012|gb|AEE62647.1| unknown [Dendroctonus ponderosae]
Length = 347
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L + V EL+LVEGSMTV TTRKT DPYII+KARD+I+L++RSVP A ++L+
Sbjct: 60 LVQKTLLAHSVKAELDLVEGSMTVKTTRKTWDPYIIIKARDMIKLMARSVPFEHAKRVLE 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + DIIKIG + RNKERFVKRRQ L+GPN TL ++E+++ CYILVQGNTVAA+G +K
Sbjct: 120 DNVGSDIIKIGTITRNKERFVKRRQRLIGPNGCTLNSMELISNCYILVQGNTVAAVGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GL+QVR+IVED M+N +HP+Y +K L+VKK+L K+P L NENWDRFLPK+ KN+ ++
Sbjct: 180 GLQQVRKIVEDTMRN-IHPMYTLKALLVKKQLLKNPELRNENWDRFLPKYANKNLSKRKQ 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
KEKKPYTPFPPP K+DK +E+GEYFL++ ++ +KK +E+ EK AE + K
Sbjct: 239 PKNKKEKKPYTPFPPPQLERKVDKEIETGEYFLNKEQRRAKKKKEQDEKHAEASKRRDEK 298
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R AF+PPEEP S E T D+AA+
Sbjct: 299 RSQAFVPPEEPHASTSKETAASTKVDIAAI 328
>gi|195032987|ref|XP_001988598.1| GH10489 [Drosophila grimshawi]
gi|378548394|sp|B4JDU5.1|KRR1_DROGR RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193904598|gb|EDW03465.1| GH10489 [Drosophila grimshawi]
Length = 341
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/253 (58%), Positives = 195/253 (77%), Gaps = 5/253 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ + E+ + EL+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L
Sbjct: 61 LVQQTVAEHHLRAELDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQ 120
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTVAA+G +K
Sbjct: 121 DETGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYK 180
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 181 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPQLANEDWSRFLPKFKNKNISKRK- 238
Query: 181 KSKEKKP---YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 237
+ K +KP YTPFPP SKIDK L SGEYFL++ +K++K+ QE+ KQAE +
Sbjct: 239 QPKSRKPKGEYTPFPPAQPESKIDKQLASGEYFLNKEQKQAKRQQERVAKQAEAAKKQDE 298
Query: 238 KRDAAFIPPEEPS 250
+R+ F+PP E S
Sbjct: 299 RRNKDFMPPTEDS 311
>gi|410918454|ref|XP_003972700.1| PREDICTED: KRR1 small subunit processome component homolog
[Takifugu rubripes]
Length = 380
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 155/283 (54%), Positives = 209/283 (73%), Gaps = 6/283 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL + + ++L+EGSMTV TTRKT DPY I++ARDLI+LL+RSVP QA++IL
Sbjct: 76 LVEKALADVHIKATMDLIEGSMTVHTTRKTFDPYAIIRARDLIKLLARSVPFEQAVRILQ 135
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+GSF
Sbjct: 136 DDIACDIIKIGTLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGSFS 195
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +NW+RFLPKF++KN+ +++
Sbjct: 196 GLKEVRKVVMDTMKN-IHPIYNIKTLMIKRELAKDPELRAQNWERFLPKFRRKNLAKRRE 254
Query: 181 KSKE--KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ KK YTPFPP SK+D+ L +GE+FL E K+ KK + + KQAE ++ K +
Sbjct: 255 PKKKAVKKEYTPFPPSQPESKVDQELATGEFFLRESVKKRKKMEAIKVKQAEVLSKKKEE 314
Query: 239 RDAAFIPP-EEPSRQNSCEA--EDKTNDVAAMAKSLKEKAKKL 278
R+ FIPP E+P + S E E K + A K + K KKL
Sbjct: 315 RNKHFIPPKEKPLMKKSTEGPTESKLDIEAIKMKVKRAKTKKL 357
>gi|195437492|ref|XP_002066674.1| GK24616 [Drosophila willistoni]
gi|378548398|sp|B4N0P7.1|KRR1_DROWI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194162759|gb|EDW77660.1| GK24616 [Drosophila willistoni]
Length = 347
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 152/262 (58%), Positives = 201/262 (76%), Gaps = 4/262 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ A+ E+ + EL+LVEGSM V TTRKT DPYII+KARD+I+L++RSVP QA ++L
Sbjct: 61 LVEQAVGEHHLKAELDLVEGSMVVKTTRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQ 120
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ CDIIKIGNLV+ KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 121 DEIGCDIIKIGNLVQKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 180
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 181 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNLSKRKQ 239
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K YTPFPP SKIDK L SGEYFL++ +K++K+ QE+Q KQAE + +
Sbjct: 240 PKVKKPKKEYTPFPPAQPESKIDKQLASGEYFLNKEQKQAKRQQERQTKQAEAAKKQDER 299
Query: 239 RDAAFIPP-EEPSRQNSCEAED 259
R+ FIPP EEP + +A D
Sbjct: 300 RNKDFIPPTEEPPTGSKRKAND 321
>gi|344304899|gb|EGW35131.1| hypothetical protein SPAPADRAFT_58320 [Spathaspora passalidarum
NRRL Y-27907]
Length = 351
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/254 (62%), Positives = 198/254 (77%), Gaps = 3/254 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ + CELNL+EGSMTV TT KT DP +I+KARDLI+LL+RSVP QA+KIL D
Sbjct: 60 VTQALDKHFIKCELNLIEGSMTVKTTPKTFDPAMILKARDLIKLLARSVPFGQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DIACDVIKIGNFVNNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 180 LKEVRRVVEDCMRN-IHPIYYIKELMIKQELSKKPELANEDWSRFLPSFKKRNVVRKKKK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
K+ YTPFPP QP KID +ESGEYFL ++++E KK QEK++KQ E + K++R
Sbjct: 239 MANKEKKVYTPFPPAQQPRKIDLQIESGEYFLGKKERELKKLQEKRDKQEEVSESRKQER 298
Query: 240 DAAFIPPEEPSRQN 253
F P E +N
Sbjct: 299 MKDFEAPTEEKHEN 312
>gi|17137346|ref|NP_477240.1| dribble [Drosophila melanogaster]
gi|74870304|sp|Q9VPU8.1|KRR1_DROME RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|7296147|gb|AAF51440.1| dribble [Drosophila melanogaster]
gi|17862394|gb|AAL39674.1| LD24634p [Drosophila melanogaster]
gi|220944572|gb|ACL84829.1| dbe-PA [synthetic construct]
gi|220954446|gb|ACL89766.1| dbe-PA [synthetic construct]
Length = 345
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/283 (53%), Positives = 208/283 (73%), Gaps = 3/283 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+ + EL+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L
Sbjct: 60 LVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 120 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 180 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQ 238
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K+ YTPFPP SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +
Sbjct: 239 PKVKKQKKEYTPFPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDER 298
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 281
R+ F+PP E S +S + ED ++ K+LK K K K+
Sbjct: 299 RNKDFVPPTEESAASSRKKEDGSSSSKVDVKALKAKLIKANKK 341
>gi|194853811|ref|XP_001968227.1| GG24622 [Drosophila erecta]
gi|378548393|sp|B3N899.1|KRR1_DROER RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190660094|gb|EDV57286.1| GG24622 [Drosophila erecta]
Length = 345
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/283 (53%), Positives = 207/283 (73%), Gaps = 3/283 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+ + EL+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L
Sbjct: 60 LVEQCLAEHHLKAELDLMEGSMVVRTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 120 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 180 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQ 238
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K+ YTPFPP SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +
Sbjct: 239 PKVKKQKKEYTPFPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDER 298
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 281
R+ F+PP E S +S + ED + K+LK K K K+
Sbjct: 299 RNKDFVPPTEESASSSLKKEDGFSSSKVDVKALKAKLIKANKK 341
>gi|336373198|gb|EGO01536.1| hypothetical protein SERLA73DRAFT_70716 [Serpula lacrymans var.
lacrymans S7.3]
Length = 381
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/275 (52%), Positives = 197/275 (71%), Gaps = 27/275 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +G+ C L+LV GSM+V TTRKT DPY+++KARD+I+LL+R V QA+K+L D
Sbjct: 63 VTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGVAISQAVKVLQD 122
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K
Sbjct: 123 DVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKS 182
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ---- 177
LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F+K+++K
Sbjct: 183 LKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKT 241
Query: 178 ----------------------KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERK 215
+K KK YTPFPPP P K+D LESGEYFL +
Sbjct: 242 AKKNEKQAVKDEARKAAGLDPAQKTDKTAKKVYTPFPPPQLPRKVDMQLESGEYFLKPHE 301
Query: 216 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 250
+E+++ +++++KQAE TA+ +++R FI P E +
Sbjct: 302 REAREIEQRKQKQAETTAKRQKERAEVFIAPVETA 336
>gi|336386044|gb|EGO27190.1| hypothetical protein SERLADRAFT_381537 [Serpula lacrymans var.
lacrymans S7.9]
Length = 386
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/275 (52%), Positives = 197/275 (71%), Gaps = 27/275 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +G+ C L+LV GSM+V TTRKT DPY+++KARD+I+LL+R V QA+K+L D
Sbjct: 68 VTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGVAISQAVKVLQD 127
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K
Sbjct: 128 DVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKS 187
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ---- 177
LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F+K+++K
Sbjct: 188 LKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKT 246
Query: 178 ----------------------KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERK 215
+K KK YTPFPPP P K+D LESGEYFL +
Sbjct: 247 AKKNEKQAVKDEARKAAGLDPAQKTDKTAKKVYTPFPPPQLPRKVDMQLESGEYFLKPHE 306
Query: 216 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 250
+E+++ +++++KQAE TA+ +++R FI P E +
Sbjct: 307 REAREIEQRKQKQAETTAKRQKERAEVFIAPVETA 341
>gi|312375637|gb|EFR22967.1| hypothetical protein AND_13898 [Anopheles darlingi]
Length = 352
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/284 (54%), Positives = 213/284 (75%), Gaps = 6/284 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL + + EL+L++G+MTV TTRKT DP+II+KARDLI+LLSRSVP QA+K+L+
Sbjct: 66 LVEKALSSHFIKAELDLIQGNMTVKTTRKTWDPFIILKARDLIKLLSRSVPYEQAVKVLE 125
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ CDIIKI NLVRNK++FVKRR L+GPN TLK+LE+LT CY+LVQG TV+A+G +K
Sbjct: 126 DEISCDIIKIKNLVRNKDKFVKRRSRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYK 185
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GL+ VR++VE+ M+N +HP+Y+IK LM+K+EL KD L ENW+RFLP+F+ KN ++
Sbjct: 186 GLQCVRKVVEETMKN-IHPIYNIKALMIKRELMKDENLREENWERFLPRFQSKNTSKRAK 244
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+KK YTPFPPP SK+DK L SGEYFL++ +K +KK QE + K+ E KR+
Sbjct: 245 PKVVKKKKDYTPFPPPLLESKVDKQLASGEYFLTDEQKTAKKKQEMKAKEKRNETEQKRR 304
Query: 239 RDAAFIPPEEPSRQNSCEAED-KTNDVAAMAKSLKEKAKKLRKQ 281
R+ F+ PEEPSR++S + + K N++ KSLK K K K+
Sbjct: 305 REQDFVAPEEPSRKHSTKNDSGKGNELN--IKSLKGKIAKANKR 346
>gi|195118158|ref|XP_002003607.1| GI18007 [Drosophila mojavensis]
gi|378548395|sp|B4KF66.1|KRR1_DROMO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193914182|gb|EDW13049.1| GI18007 [Drosophila mojavensis]
Length = 344
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/286 (54%), Positives = 209/286 (73%), Gaps = 10/286 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+ + EL+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L
Sbjct: 61 LVEQCLAEHHLKAELDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQ 120
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 121 DDTGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 180
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV D M N +HP+Y+IK LM+K+EL KDP LA E+W RFLPKFK KN+ ++K
Sbjct: 181 GLQQVRDIVLDTMNN-VHPIYNIKALMIKRELMKDPKLAGEDWSRFLPKFKNKNISKRKQ 239
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K YTPFPP SKIDK L +GEYFL++ +K++K+ QE+ KQAE + +
Sbjct: 240 PKNKKPKKEYTPFPPQQPESKIDKQLATGEYFLNKEQKQAKRQQERTAKQAEAAKKQDER 299
Query: 239 RDAAFIPPEE----PSRQNSCEAEDKTNDVAAM-AKSLKEKAKKLR 279
R+ F+PP E PSR+ + AED DV A+ AK +K KK R
Sbjct: 300 RNKDFVPPTEDTPGPSRKRA--AEDNKVDVQALKAKLMKANKKKER 343
>gi|367053715|ref|XP_003657236.1| 90S preribosome/SSU processome component KRR1 [Thielavia terrestris
NRRL 8126]
gi|347004501|gb|AEO70900.1| hypothetical protein THITE_2122753 [Thielavia terrestris NRRL 8126]
Length = 321
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 195/252 (77%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL ++G+ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 57 LVTKALDKHGIKATLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDIIKI N+VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG +K
Sbjct: 117 DGMACDIIKIRNMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPYK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VED MQN +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + ++
Sbjct: 177 GLKEVRRVVEDTMQN-IHPIYLIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRK 235
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KKPYTPFPP P+ SK+D +ESGEYFLS+ K+ E+ EK +K E K
Sbjct: 236 PFKVTDKSKKPYTPFPPAPEKSKVDMQIESGEYFLSKEAKQRAAEAERAEKAKQKKEEKK 295
Query: 237 RKRDAAFIPPEE 248
R+R+ F+PPEE
Sbjct: 296 REREREFVPPEE 307
>gi|403271960|ref|XP_003927864.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Saimiri boliviensis boliviensis]
Length = 388
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 196/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSYEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAVSKRQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|444314297|ref|XP_004177806.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
gi|387510845|emb|CCH58287.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
Length = 316
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 164/257 (63%), Positives = 206/257 (80%), Gaps = 3/257 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V +L +Y V+C L+L+EGSMTV TTRKT DP II+KARDLI+LL+RSVP PQAI+IL D
Sbjct: 60 VTKSLDKYHVACTLDLIEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPYPQAIRILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN+V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DIACDVIKIGNVVNNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 180 LKEVRRVVEDCMKN-VHPIYHIKELMIKRELSKRPELANEDWSRFLPMFKKRNVARKKSK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+K+ YTPFPP P K+D +ESGEYFLS+++KE KK +E++EKQ EK E +++R
Sbjct: 239 KPKKEKKVYTPFPPAQLPRKVDLEIESGEYFLSKKEKEIKKLKERREKQEEKQVEKEKER 298
Query: 240 DAAFIPPEEPSRQNSCE 256
FI P E ++S +
Sbjct: 299 RKDFIAPSEKEYKSSLQ 315
>gi|226442952|ref|NP_848725.2| KRR1 small subunit processome component homolog [Mus musculus]
gi|50400505|sp|Q8BGA5.1|KRR1_MOUSE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2 homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|26326557|dbj|BAC27022.1| unnamed protein product [Mus musculus]
gi|26334765|dbj|BAC31083.1| unnamed protein product [Mus musculus]
gi|59809046|gb|AAH89510.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Mus musculus]
gi|74219882|dbj|BAE40525.1| unnamed protein product [Mus musculus]
gi|148689796|gb|EDL21743.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_b [Mus musculus]
Length = 380
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 203/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 77 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 136
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 137 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 196
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 197 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 255
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 256 PKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEE 315
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVAA+
Sbjct: 316 RNKAFIPPKEKPAVKPKEASTETKIDVAAI 345
>gi|62825895|gb|AAH94236.1| Krr1 protein [Mus musculus]
Length = 379
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 203/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 76 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 135
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 136 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 195
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 196 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 254
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 255 PKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEE 314
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVAA+
Sbjct: 315 RNKAFIPPKEKPAVKPKEASTETKIDVAAI 344
>gi|148689797|gb|EDL21744.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_c [Mus musculus]
Length = 380
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 203/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 77 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 136
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 137 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 196
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 197 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 255
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 256 PKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEE 315
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVAA+
Sbjct: 316 RNKAFIPPKEKPAVKPKEASTETKIDVAAI 345
>gi|380809140|gb|AFE76445.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|384945036|gb|AFI36123.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 206/270 (76%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE T++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEATSKKQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|344266385|ref|XP_003405261.1| PREDICTED: KRR1 small subunit processome component homolog
[Loxodonta africana]
Length = 381
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFDQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEAVSKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R AFIPP+E EA ++T DVAA+
Sbjct: 317 RKKAFIPPKEKPVVKPKEASNETKIDVAAI 346
>gi|417399949|gb|JAA46955.1| Putative rrna processing protein [Desmodus rotundus]
Length = 381
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F+
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFR 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L +GEYFL +K+ +K + + KQAE + + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELATGEYFLKASQKKRQKMEAIKAKQAEALTKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVAA+
Sbjct: 317 RNKAFIPPKEKPVVKPKEASTETKIDVAAI 346
>gi|195148176|ref|XP_002015050.1| GL18627 [Drosophila persimilis]
gi|378548396|sp|B4G9L6.1|KRR1_DROPE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194107003|gb|EDW29046.1| GL18627 [Drosophila persimilis]
Length = 340
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 204/276 (73%), Gaps = 5/276 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ + E+ + EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L
Sbjct: 59 LVEQCVAEHQLKAELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQ 118
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 119 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 178
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 179 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQ 237
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K YTPFPP SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +
Sbjct: 238 PKSKKPKKEYTPFPPAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDER 297
Query: 239 RDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 272
R+ F+PP E PSR+ E K + A AK +K
Sbjct: 298 RNKDFVPPTEEAPSRKRQAEDSSKVDVKALKAKLVK 333
>gi|125985977|ref|XP_001356752.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
gi|54645077|gb|EAL33817.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 204/276 (73%), Gaps = 5/276 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ + E+ + EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L
Sbjct: 59 LVEQCVAEHQLKAELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQ 118
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 119 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 178
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 179 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQ 237
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K YTPFPP SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +
Sbjct: 238 PKAKKPKKEYTPFPPAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDER 297
Query: 239 RDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 272
R+ F+PP E PSR+ E K + A AK +K
Sbjct: 298 RNKDFVPPTEEAPSRKRQAEDSSKVDVKALKAKLVK 333
>gi|289740429|gb|ADD18962.1| rRNA processing protein [Glossina morsitans morsitans]
Length = 341
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 148/251 (58%), Positives = 192/251 (76%), Gaps = 5/251 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+ + ELNL+EGSMTV TTRKT DPYII+KARD+I+L++RSVP Q+ ++L
Sbjct: 58 LVQQCLTEHFLKAELNLIEGSMTVKTTRKTWDPYIIIKARDMIKLMARSVPFEQSKRVLQ 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ CDIIKIG+LVR KE+F+KRRQ L+GPN +TLK++E+LT CY+LVQGNTVAA+G +K
Sbjct: 118 DEIGCDIIKIGSLVRKKEKFIKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQ 177
GL+ VR IV D M N +HP+Y++K LM+K+EL KD LA+E+W RFLPKFK KNV +Q
Sbjct: 178 GLQHVRDIVLDTMNN-VHPIYNVKALMIKRELMKDAQLAHEDWSRFLPKFKNKNVSKRQQ 236
Query: 178 KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 237
K+K K K Y+PFPP SKIDK L SGEYFL++ ++ +K E+ KQAE + K
Sbjct: 237 PKLK-KGKDDYSPFPPQRLESKIDKKLASGEYFLNKEQQYQRKQHERAAKQAETVQKQKE 295
Query: 238 KRDAAFIPPEE 248
KR A FIPP E
Sbjct: 296 KRQANFIPPAE 306
>gi|410078430|ref|XP_003956796.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
gi|372463381|emb|CCF57661.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
Length = 344
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 149/213 (69%), Positives = 175/213 (82%), Gaps = 3/213 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQAIKIL+D
Sbjct: 60 VTKALEKHHIACILDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAIKILED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 NMACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRR+VEDCM N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 180 LKEVRRVVEDCMLN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPK 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLS 212
K+ YTPFPP P K+D +ESGEYFLS
Sbjct: 239 KIRKEKKVYTPFPPTQLPRKVDLEIESGEYFLS 271
>gi|326911590|ref|XP_003202141.1| PREDICTED: KRR1 small subunit processome component homolog
[Meleagris gallopavo]
Length = 375
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 198/250 (79%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL
Sbjct: 73 LVQKALSEHYVNATLDLIEGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQ 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRN+E FVKRR L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 133 DDVACDIIKIGSLVRNRESFVKRRGRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +NW+RFLPKFK+KN+K++K
Sbjct: 193 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLKKRKE 251
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL E +K+ K+ +E + KQA+ + + +
Sbjct: 252 PKKKNIKKEYTPFPPPQPESQIDKELASGEYFLKESQKKRKRVEEIKAKQADAVKKRQEE 311
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 312 RNKAFIPPKE 321
>gi|291389602|ref|XP_002711307.1| PREDICTED: HIV-1 rev binding protein 2 [Oryctolagus cuniculus]
Length = 380
Score = 299 bits (766), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 203/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L ++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRTQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVAA+
Sbjct: 317 RNKAFIPPKEKPVVKPKEASTETKIDVAAI 346
>gi|392593127|gb|EIW82453.1| ribosomal RNA assembly protein mis3, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 355
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/297 (50%), Positives = 208/297 (70%), Gaps = 38/297 (12%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+ +G++C L+LV GSM+V TTRKT DPY+I+KARDL++LL+R V QA+K+L D
Sbjct: 44 VTRALESHGIACTLDLVHGSMSVRTTRKTFDPYVILKARDLVKLLARGVAINQAVKVLQD 103
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K
Sbjct: 104 DVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKS 163
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----- 176
LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F+K+++K
Sbjct: 164 LKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKT 222
Query: 177 ----QKKVKSKE-------------------KKPYTPFPPPPQPSKIDKLLESGEYFLSE 213
+ KV +E KK YTPFPP P K+D LESGEYFL
Sbjct: 223 ARKNEAKVAKEEARKAAGLDPVESSRKDGPSKKTYTPFPPAQMPRKVDLQLESGEYFLKA 282
Query: 214 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPS--------RQNSCEAEDKT 261
+KE+++ +++++KQ EKTA + +R F+ P EEP+ ++ EA+D T
Sbjct: 283 HEKEAREAEKRKQKQNEKTALRQAERAEVFVAPVEEPAVTADERRKKRRYAEADDVT 339
>gi|149742864|ref|XP_001488486.1| PREDICTED: KRR1 small subunit processome component homolog [Equus
caballus]
Length = 380
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 204/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFN 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAVKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R AFIPP+E EA +T DVAA+
Sbjct: 317 RKKAFIPPKEKPVVKPKEASTETKIDVAAI 346
>gi|332020472|gb|EGI60887.1| KRR1 small subunit processome component-like protein [Acromyrmex
echinatior]
Length = 336
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/281 (54%), Positives = 214/281 (76%), Gaps = 9/281 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL EY + EL+L+EGSMTV TTRKT DPYII+KARD+I+L++RSVP QA+K+L
Sbjct: 57 LIQKALDEYHIKAELDLIEGSMTVKTTRKTWDPYIIIKARDVIKLMARSVPFEQAVKVLQ 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI + VRNKE+FVKRRQ L+GPN LK++E+LT CY++VQG TV+A+G +K
Sbjct: 117 DDITADIIKISSFVRNKEKFVKRRQRLIGPNGCNLKSIELLTNCYVVVQGQTVSALGPYK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQK 178
G++QVR+IV+D M+N +HPVY +K LM+K+EL K+P L +ENW+R+LPK+ KN+ +++
Sbjct: 177 GVQQVRKIVQDTMKN-VHPVYSLKTLMLKRELSKNPKLKDENWERYLPKYTSKNISKRKE 235
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KEKKPYTPFPPP Q SKIDK + SGEYFL E +K +K+ +E + K E T + + +
Sbjct: 236 PKKKKEKKPYTPFPPPQQESKIDKAMASGEYFLKEEQKRAKRKKELEAKHEEATKKRQER 295
Query: 239 RDAAFIPPEEPSRQNSCEAED-KTN-DVAAMAKSLKEKAKK 277
R AF+PPEE E+E KTN D+A + + ++++ KK
Sbjct: 296 RAQAFVPPEE----KPVESETGKTNIDIAEIKRKVQQRLKK 332
>gi|426373503|ref|XP_004053641.1| PREDICTED: KRR1 small subunit processome component homolog [Gorilla
gorilla gorilla]
Length = 381
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPTVKPKEASTETKIDVASI 346
>gi|374095412|sp|Q3B7L9.2|KRR1_BOVIN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|296488009|tpg|DAA30122.1| TPA: KRR1 small subunit processome component homolog [Bos taurus]
gi|440893371|gb|ELR46169.1| KRR1 small subunit processome component-like protein [Bos grunniens
mutus]
Length = 382
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 196/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL
Sbjct: 78 LVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|340960838|gb|EGS22019.1| hypothetical protein CTHT_0039040 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 322
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/252 (61%), Positives = 198/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++ L++VEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+
Sbjct: 57 LVTKALEKHGIAATLDIVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDIIKI ++VRNKERFVKRRQ L+G N +TLKALE+LT YILV GNTV+ MG +K
Sbjct: 117 DGMACDIIKIRSMVRNKERFVKRRQRLLGQNGTTLKALELLTQTYILVHGNTVSVMGGYK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VED M N +HP+Y IK LM+K+EL KDPALA+E+W R+LP+FKK+ + ++
Sbjct: 177 GLKEVRRVVEDTMNN-IHPIYLIKELMIKRELAKDPALAHEDWSRYLPQFKKRTLSKRRK 235
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
K+ K KKPYTPFPP P+ SKID +ESGEYFLS+ K+ E+ EK +K E K
Sbjct: 236 PFKINDKSKKPYTPFPPAPEKSKIDLQIESGEYFLSKEAKQRAAEAERAEKARQKKEEKK 295
Query: 237 RKRDAAFIPPEE 248
R+R+ F+PPEE
Sbjct: 296 REREKEFVPPEE 307
>gi|452979973|gb|EME79735.1| hypothetical protein MYCFIDRAFT_156958 [Pseudocercospora fijiensis
CIRAD86]
Length = 341
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/247 (61%), Positives = 192/247 (77%), Gaps = 5/247 (2%)
Query: 6 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 65
L+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KIL+D M C
Sbjct: 63 LEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPTPQALKILEDGMAC 122
Query: 66 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
D+IKI +VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+ MG +K LK+V
Sbjct: 123 DVIKIRGMVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGGYKNLKEV 182
Query: 126 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VK 181
RR+VEDCM N +HP+YHIK LM+K+EL KDP L NENW+RFLP FKK+N+ +++ V
Sbjct: 183 RRVVEDCMAN-IHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLAKRRKPFNVT 241
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
K KK YTPFPP + SK+D +ESGEYFL+ KE K + ++E EK E K+KR+
Sbjct: 242 DKSKKVYTPFPPAQEKSKVDLQIESGEYFLNNAAKERAKKERREEAMKEKMEERKKKREE 301
Query: 242 AFIPPEE 248
AF P+E
Sbjct: 302 AFEAPQE 308
>gi|156382113|ref|XP_001632399.1| predicted protein [Nematostella vectensis]
gi|156219454|gb|EDO40336.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/253 (60%), Positives = 204/253 (80%), Gaps = 1/253 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ LKE+ + C+L+L+EGSMTV TTRKT DPYII+KARD+I+L++RSV QA +IL+
Sbjct: 47 LVEKELKEHNLKCQLDLIEGSMTVFTTRKTFDPYIIIKARDMIKLMARSVQFEQAKRILE 106
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ CDIIKI +LVRNKERFVKRRQ L+GPN +TLKALE+LT CYI+VQGNTV+A+G +K
Sbjct: 107 DEVACDIIKIASLVRNKERFVKRRQRLIGPNCATLKALELLTECYIMVQGNTVSALGPYK 166
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVR++VE+ M+N +HP+Y+IK LM+K+EL KDP L NE+WDRFLPKF+KK VK+KK
Sbjct: 167 GLKQVRKVVEETMKN-VHPIYNIKTLMIKRELAKDPDLKNESWDRFLPKFRKKAVKKKKK 225
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KK YTPFPPP SK+DK L SGEYFL E++++++ E++++QA + K R+
Sbjct: 226 VPKTKKEYTPFPPPQPESKMDKELASGEYFLKEKERKAQAQHERKQRQAAAAEKRKVTRE 285
Query: 241 AAFIPPEEPSRQN 253
A+IPP E +N
Sbjct: 286 QAYIPPVETVPKN 298
>gi|410965126|ref|XP_003989103.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Felis catus]
Length = 381
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 204/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA + DVAA+
Sbjct: 317 RNKAFIPPKEKPVVKPKEASTENKIDVAAI 346
>gi|395820180|ref|XP_003783452.1| PREDICTED: KRR1 small subunit processome component homolog
[Otolemur garnettii]
Length = 380
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/270 (55%), Positives = 204/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDIACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKAHQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA +
Sbjct: 317 RNKAFIPPKEKPVVKPKEASTETKIDVATI 346
>gi|169607927|ref|XP_001797383.1| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
gi|160701520|gb|EAT85679.2| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
Length = 509
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 157/250 (62%), Positives = 193/250 (77%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+ AL ++GV CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILD
Sbjct: 58 FITQALAKHGVGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSVPAPQAVKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ DIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT Y+LVQGNTVAAMG FK
Sbjct: 118 DEVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTETYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK VRRI+ED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++
Sbjct: 178 GLKTVRRIIEDTMHN-IHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGEYFL + KE K +E+++K +K +
Sbjct: 237 PHKVTDKAKKVYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKAREEREDKMKDKMDAKR 296
Query: 237 RKRDAAFIPP 246
R+R A ++ P
Sbjct: 297 RERMAEYVAP 306
>gi|367033049|ref|XP_003665807.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
gi|347013079|gb|AEO60562.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
Length = 320
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/252 (60%), Positives = 197/252 (78%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 57 LVTKALEKHGIAATLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDIIKI NLVRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG +K
Sbjct: 117 DGMACDIIKIRNLVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPYK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRR+VED M+N +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + ++
Sbjct: 177 GLKEVRRVVEDTMRN-IHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRK 235
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
K+ K KKPYTPFPP P+ SK+D +E+GEYFLS+ K+ E+ EK +K E K
Sbjct: 236 PYKITDKSKKPYTPFPPAPEKSKVDMQIETGEYFLSKEAKQRAAEAERAEKAKQKKEEKK 295
Query: 237 RKRDAAFIPPEE 248
R+R+ ++PPEE
Sbjct: 296 REREREYVPPEE 307
>gi|380809138|gb|AFE76444.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 349
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 197/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE T++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEATSKKQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|16877011|gb|AAH16778.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
gi|123993753|gb|ABM84478.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993755|gb|ABM84479.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993757|gb|ABM84480.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|124000011|gb|ABM87514.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
Length = 381
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|355786322|gb|EHH66505.1| HIV-1 Rev-binding protein 2 [Macaca fascicularis]
Length = 381
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKKQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|189053929|dbj|BAG36436.1| unnamed protein product [Homo sapiens]
Length = 381
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|117676403|ref|NP_008974.5| KRR1 small subunit processome component homolog [Homo sapiens]
gi|50400303|sp|Q13601.4|KRR1_HUMAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Rev-interacting protein 1; Short=Rip-1
gi|119617715|gb|EAW97309.1| HIV-1 Rev binding protein 2 [Homo sapiens]
Length = 381
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|397526018|ref|XP_003832938.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pan paniscus]
Length = 381
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILH 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|355564479|gb|EHH20979.1| HIV-1 Rev-binding protein 2 [Macaca mulatta]
Length = 381
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKKQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|426224177|ref|XP_004006250.1| PREDICTED: KRR1 small subunit processome component homolog [Ovis
aries]
Length = 382
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 196/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S++DK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQVDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|410220502|gb|JAA07470.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261984|gb|JAA18958.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261986|gb|JAA18959.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410305048|gb|JAA31124.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410351423|gb|JAA42315.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
Length = 381
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|388452386|ref|NP_001252643.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|387273299|gb|AFJ70144.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKKQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|402886888|ref|XP_003906847.1| PREDICTED: KRR1 small subunit processome component homolog [Papio
anubis]
Length = 381
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/270 (55%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVRTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKQQKMEAIKAKQAEAISKKQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEAATETKIDVASI 346
>gi|449297121|gb|EMC93139.1| hypothetical protein BAUCODRAFT_36810 [Baudoinia compniacensis UAMH
10762]
Length = 331
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/252 (58%), Positives = 196/252 (77%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
M+ L+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP+PQA+KI++
Sbjct: 58 MITRVLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPSPQAVKIME 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKI LVRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+ MG++K
Sbjct: 118 DGVACDVIKIRGLVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGAYK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
LK+VRR++EDCM N +HP+YHIK LM+K+EL KDP L NENWDRFLP FKK+N+ ++
Sbjct: 178 SLKEVRRVIEDCMAN-IHPIYHIKELMIKRELAKDPELKNENWDRFLPHFKKRNLSKRRK 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP + SK+D +ESGE+FL+++ KE + ++E K E +
Sbjct: 237 PFKVVDKAKKVYTPFPPEREKSKVDLQIESGEFFLNKQAKERAGRERREENMRAKMEERR 296
Query: 237 RKRDAAFIPPEE 248
++R+ AF+ P E
Sbjct: 297 KRREEAFVAPGE 308
>gi|332220930|ref|XP_003259610.1| PREDICTED: KRR1 small subunit processome component homolog
[Nomascus leucogenys]
Length = 381
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|195470375|ref|XP_002087483.1| GE15854 [Drosophila yakuba]
gi|378548399|sp|B4P2Y8.1|KRR1_DROYA RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194173584|gb|EDW87195.1| GE15854 [Drosophila yakuba]
Length = 344
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/282 (53%), Positives = 207/282 (73%), Gaps = 6/282 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+ + EL+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L
Sbjct: 60 LVEQCLSEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 120 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 180 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQ 238
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K+ YTPFPP SK+DK L SGEYFL++ +K++K+ Q + EKQ E +
Sbjct: 239 PKVKKQKKEYTPFPPSQPESKVDKQLASGEYFLNQEQKQAKRNQGRTEKQKEAAKRQDER 298
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN---DVAAMAKSLKEKAKK 277
R+ F+PP E S +S + ED ++ DV A+ L + KK
Sbjct: 299 RNKDFVPPTEESAASSRKKEDGSSTKVDVKALKAKLIKANKK 340
>gi|311255954|ref|XP_003126436.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Sus scrofa]
Length = 375
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 204/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 72 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 131
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 132 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 191
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QK 178
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 192 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 250
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KK YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 251 PKKKTTKKEYTPFPPPQPESQIDKELASGEYFLKSSQKKRQKMEAIKAKQAEALSKRQEE 310
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA +
Sbjct: 311 RNKAFIPPKEKPVVKPKEASTETKIDVATI 340
>gi|297692480|ref|XP_002823579.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pongo abelii]
Length = 381
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASAETKIDVASI 346
>gi|167533103|ref|XP_001748232.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773352|gb|EDQ86993.1| predicted protein [Monosiga brevicollis MX1]
Length = 1010
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/270 (60%), Positives = 206/270 (76%), Gaps = 6/270 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ LK ++CEL+L+EGSMTV TTRKT DPYII+KARDLI+LL+RSVP AIKIL D
Sbjct: 705 ITSELKRLHIACELDLIEGSMTVRTTRKTWDPYIILKARDLIKLLARSVPFEHAIKILQD 764
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKI LVRNKERFVKRRQ L+GPN +TLKA+E+LT CYILVQGNTVA MG FKG
Sbjct: 765 DVACDIIKINGLVRNKERFVKRRQRLIGPNGATLKAIELLTECYILVQGNTVACMGPFKG 824
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQ RR+V DCM N +HPVY+IK +M+K+EL + AL +WDRFLPKFK N+K+KK K
Sbjct: 825 LKQARRVVLDCMNN-IHPVYNIKAMMIKRELMANDALKEASWDRFLPKFKTSNIKRKKPK 883
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
K+K+ YTPFPP PQPSK D +LESGEYFL ++++ Q+K+++ A+K A N+ KR +
Sbjct: 884 FKKKE-YTPFPPAPQPSKKDLMLESGEYFLKPEERQAALTQKKKDQAAQKAAANQAKRQS 942
Query: 242 AFIPPEE---PSRQNSCEA-EDKTNDVAAM 267
A+ P E P+++N A E K DVAA
Sbjct: 943 AYETPAEADRPAKRNRASAPESKHVDVAAF 972
>gi|157823697|ref|NP_001101564.1| KRR1 small subunit processome component homolog [Rattus norvegicus]
gi|118763785|gb|AAI28769.1| Hrb2 protein [Rattus norvegicus]
gi|149066984|gb|EDM16717.1| rCG48818, isoform CRA_a [Rattus norvegicus]
Length = 380
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 194/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL
Sbjct: 77 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQ 136
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 137 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 196
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 197 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 255
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S++DK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 256 PKKKSVKKEYTPFPPPQPESQVDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEE 315
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 316 RNKAFIPPKE 325
>gi|117938813|gb|AAH05225.1| KRR1 protein [Homo sapiens]
Length = 362
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|401887035|gb|EJT51041.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 366
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 193/262 (73%), Gaps = 16/262 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ L YG+ C L+L+ G M+V TTRKT DPYII KARDL++LL+R V APQA+K+L D
Sbjct: 86 ITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLARGVSAPQAMKVLQD 145
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDI+KI +VRNKERFVKRRQ +VGP STLKA+E+LT CY+LVQGNTV+ MGS+KG
Sbjct: 146 GIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLVQGNTVSCMGSYKG 205
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRI+ DCM N +HP+Y IK LM+++EL KDP LANE+WDRFLPKF+KK++K +
Sbjct: 206 LKEVRRIIIDCMHN-IHPIYRIKELMIRRELAKDPKLANESWDRFLPKFQKKHLKTSEKT 264
Query: 182 SKEK---------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 226
+K+ K YTPFPP P SK+D L++GEYFL ++KE+ E++E
Sbjct: 265 AKKNAAAGSAAGEPAKKKAKVYTPFPPAPAQSKLDVALQTGEYFLKPKEKEAAARAEREE 324
Query: 227 KQAEKTAENKRKRDAAFIPPEE 248
+ AEKT + + +R+ AF+ PEE
Sbjct: 325 RHAEKTEKKRAQREEAFVAPEE 346
>gi|354480544|ref|XP_003502466.1| PREDICTED: KRR1 small subunit processome component homolog
[Cricetulus griseus]
Length = 381
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 194/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 257 PKKKSIKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|21707899|gb|AAH33887.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 196/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPGSQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|344240571|gb|EGV96674.1| KRR1 small subunit processome component-like [Cricetulus griseus]
Length = 711
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 147/256 (57%), Positives = 198/256 (77%), Gaps = 4/256 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 257 PKKKSIKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEE 316
Query: 239 RDAAFIPP-EEPSRQN 253
R+ AFIPP E+P+ Q+
Sbjct: 317 RNKAFIPPKEKPAEQD 332
>gi|406695196|gb|EKC98508.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 8904]
Length = 366
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 193/262 (73%), Gaps = 16/262 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ L YG+ C L+L+ G M+V TTRKT DPYII KARDL++LL+R V APQA+K+L D
Sbjct: 86 ITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLARGVSAPQAMKVLQD 145
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDI+KI +VRNKERFVKRRQ +VGP STLKA+E+LT CY+LVQGNTV+ MGS+KG
Sbjct: 146 GIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLVQGNTVSCMGSYKG 205
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VRRI+ DCM N +HP+Y IK LM+++EL KDP LANE+WDRFLPKF+KK++K +
Sbjct: 206 LKEVRRIIIDCMHN-IHPIYRIKELMIRRELAKDPKLANESWDRFLPKFQKKHLKTSEKT 264
Query: 182 SKEK---------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 226
+K+ K YTPFPP P SK+D L++GEYFL ++KE+ E++E
Sbjct: 265 AKKNAAAGSAAGEPAKKKAKVYTPFPPAPAQSKLDVALQTGEYFLKPKEKEAAARAEREE 324
Query: 227 KQAEKTAENKRKRDAAFIPPEE 248
+ AEKT + + +R+ AF+ PEE
Sbjct: 325 RHAEKTEKKRAQREEAFVAPEE 346
>gi|26328295|dbj|BAC27888.1| unnamed protein product [Mus musculus]
Length = 380
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 151/270 (55%), Positives = 202/270 (74%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 77 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 136
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 137 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 196
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFL +FK KNV ++K
Sbjct: 197 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLQQFKHKNVNKRKE 255
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 256 PKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEE 315
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVAA+
Sbjct: 316 RNKAFIPPKEKPAVKPKEASTETKIDVAAI 345
>gi|307183875|gb|EFN70489.1| KRR1 small subunit processome component-like protein [Camponotus
floridanus]
Length = 305
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 194/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V EL+LVEGSMTV TTRKT DPYIIVKARD+I+L++RSVP QA+++L
Sbjct: 52 LVQKALAEHHVKAELDLVEGSMTVKTTRKTWDPYIIVKARDMIKLMARSVPFEQAVRVLQ 111
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ D+IKI +LVRNK +FVKRRQ L+GPN LK++E+LT CY++VQG TV+A+G +K
Sbjct: 112 DDIAADVIKISSLVRNKAKFVKRRQRLIGPNGCNLKSIELLTNCYVVVQGQTVSALGPYK 171
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQK 178
GL+QVR++VED M+N +HPVY +K LM+K+EL K+P L NENW+++LPK+ KN+ +++
Sbjct: 172 GLQQVRKVVEDTMRN-IHPVYSLKALMLKRELAKNPKLKNENWEQYLPKYNSKNISKRKE 230
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K K KKPYTPFPPP Q SKIDK + SGEYFL E +K +K+ +E Q K E + +
Sbjct: 231 PKKKKVKKPYTPFPPPQQESKIDKEMASGEYFLKEEQKRAKRRKEYQAKHEEAAKRREER 290
Query: 239 RDAAFIPPEE 248
R AFIPPEE
Sbjct: 291 RAQAFIPPEE 300
>gi|159465269|ref|XP_001690845.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279531|gb|EDP05291.1| predicted protein [Chlamydomonas reinhardtii]
Length = 319
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 194/265 (73%), Gaps = 21/265 (7%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS-VPAPQ------ 54
V ALK+ G+ CELNLVEGSMTV TTRKT DPY I+KARDLI+LL+RS VP+
Sbjct: 55 VTKALKDMGIGCELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSEVPSADVLSACA 114
Query: 55 ---AIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN 111
+I D+MQCDIIKI ++RNKE+FVKRRQ L+GPN STLKALE+LTGCY+LVQGN
Sbjct: 115 LAVSISTQQDDMQCDIIKISGIIRNKEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGN 174
Query: 112 TVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF- 170
TV+AMG +KGLKQ+RRIVEDC++N +HP+YHIK LM+K+EL KDPALA ENWDRFLPKF
Sbjct: 175 TVSAMGPYKGLKQLRRIVEDCIKN-VHPIYHIKTLMIKRELAKDPALAEENWDRFLPKFK 233
Query: 171 ---------KKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKW 221
+ K + K KK YTPFPPP PSK+D LESGEYFLSE +K +
Sbjct: 234 KKNVKRKKPEAKPADEAGGKEAAKKVYTPFPPPMPPSKMDLQLESGEYFLSEEQKRERAR 293
Query: 222 QEKQEKQAEKTAENKRKRDAAFIPP 246
K Q KTAE KR+R+AAF+ P
Sbjct: 294 AAKDAAQEAKTAERKRQREAAFVAP 318
>gi|348580525|ref|XP_003476029.1| PREDICTED: KRR1 small subunit processome component homolog [Cavia
porcellus]
Length = 381
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/270 (55%), Positives = 204/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYF+ +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFMKANQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA +
Sbjct: 317 RNKAFIPPKEKPAAKPKEAPTETKIDVATI 346
>gi|74147291|dbj|BAE27537.1| unnamed protein product [Mus musculus]
Length = 389
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 194/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 77 LVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 136
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 137 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFS 196
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 197 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 255
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +
Sbjct: 256 PKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEE 315
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 316 RNKAFIPPKE 325
>gi|224094097|ref|XP_002193046.1| PREDICTED: KRR1 small subunit processome component homolog
[Taeniopygia guttata]
Length = 386
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 148/270 (54%), Positives = 207/270 (76%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL
Sbjct: 83 LVQKALGEHYVNAALDLIEGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQ 142
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVR +E F+KRR L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 143 DDVACDIIKIGSLVRKRETFIKRRARLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 202
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L ++W+RFLPKFK+KN+K++K
Sbjct: 203 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDPELRTQSWERFLPKFKRKNLKKRKE 261
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S++DK L SGEYFL ER+K+ K+ +E + KQA+ + +
Sbjct: 262 PKKKNTKKEYTPFPPPQPESQVDKELASGEYFLKERQKKRKQMEEIKAKQADAVKRRQEE 321
Query: 239 RDAAFIPP-EEPSRQNSCEAEDKTNDVAAM 267
R+ AFIPP E+P+ + + +K D+ A+
Sbjct: 322 RNKAFIPPKEKPAVKTKKASTEKKIDIEAI 351
>gi|302413862|ref|XP_003004763.1| 90S preribosome/SSU processome component KRR1 [Verticillium
albo-atrum VaMs.102]
gi|261355832|gb|EEY18260.1| ribosomal RNA assembly protein KRR1 [Verticillium albo-atrum
VaMs.102]
Length = 319
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/250 (60%), Positives = 188/250 (75%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L++YG++C L+L+EGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 57 LVTKSLEKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARDLIKLLARSVPAPQAVKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLV NK+RFVKRRQ L+GPN STLKALE+LT YILV GNTV+AMG +K
Sbjct: 117 DGVACDIIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELLTETYILVHGNTVSAMGPYK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK+VRRI M N +HP+Y IK LM+K+EL KDP LANE+WDRFLP F KK + +
Sbjct: 177 GLKEVRRIAIQTMDN-IHPIYAIKQLMIKRELAKDPELANESWDRFLPDFGKKTLSHRRV 235
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+DK +ESGEYFL + K QE+ E Q +K E
Sbjct: 236 PHKVSDKSKKVYTPFPPAPEKSKVDKQIESGEYFLGKEAKARAVAQERVESQKQKKEEKL 295
Query: 237 RKRDAAFIPP 246
+KR+ ++ P
Sbjct: 296 QKREREYVAP 305
>gi|402226410|gb|EJU06470.1| hypothetical protein DACRYDRAFT_45074 [Dacryopinax sp. DJM-731 SS1]
Length = 397
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 146/290 (50%), Positives = 197/290 (67%), Gaps = 43/290 (14%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L+ +G++C L+L+ GSM+V TTRKT DPYII KARD+I+LL+R V QA+KILD
Sbjct: 68 VVTTSLEAHGIACMLDLIHGSMSVRTTRKTFDPYIIFKARDMIKLLARGVAVGQAVKILD 127
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQGNTV+ MG +K
Sbjct: 128 DAVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGNTVSVMGPYK 187
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
LK+VRRIV DCM N +HP+Y IK LM+++EL KDP LANE+WDRFLPKF+K+N+ +
Sbjct: 188 SLKEVRRIVIDCMNN-IHPIYRIKELMIRRELAKDPKLANESWDRFLPKFRKRNLTSAEK 246
Query: 181 KSKEK------------------------------------------KPYTPFPPPPQPS 198
+K++ K YTPFPP PS
Sbjct: 247 SAKKRARDEGEEAQNGAQEAFPKEEDQAESSTAPPKEEKKEKKEKKKKTYTPFPPAQLPS 306
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
K+D LE+GEYFL + +K ++ Q+++E Q E + KR+R+ AF+ P+E
Sbjct: 307 KVDIALETGEYFLKKHEKVRREVQKREEVQQEVVRKRKREREEAFVAPKE 356
>gi|294898650|ref|XP_002776320.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239883230|gb|EER08136.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 337
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 153/248 (61%), Positives = 186/248 (75%), Gaps = 3/248 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK L + + ELNLVEGSMTV TTRKT DPY I++ARDLI+LL+RSVP PQA KI+DD
Sbjct: 84 VKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSVPLPQAKKIMDD 143
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CDIIK G LVRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV AMG+ K
Sbjct: 144 NMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQGQTVVAMGTHKA 203
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQVRRIVEDC N +HPVYH+K LM+KKELEK+ L +ENWDRFLP FK +NV++KK K
Sbjct: 204 LKQVRRIVEDCFHN-VHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQRKKQK 262
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
KK FPP P K D +E+GEYFLS+ +K S + +K+E Q + + + KR+R+
Sbjct: 263 KIAKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQVSEQRKREREE 322
Query: 242 AFI--PPE 247
+ PPE
Sbjct: 323 MYSQPPPE 330
>gi|19913489|gb|AAH26107.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 151/270 (55%), Positives = 204/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++ D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVALDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|301770537|ref|XP_002920686.1| PREDICTED: KRR1 small subunit processome component homolog
[Ailuropoda melanoleuca]
Length = 380
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 203/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ +S L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHISATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+ +G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ--K 178
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV + +
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKCKE 256
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KK YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA + DVAA+
Sbjct: 317 RNKAFIPPKEKPVVKPKEASTENKIDVAAI 346
>gi|73977410|ref|XP_851876.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Canis lupus familiaris]
Length = 380
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 195/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+ +G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|78395091|gb|AAI07827.1| LOC553525 protein, partial [Danio rerio]
Length = 347
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/250 (57%), Positives = 193/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E ++ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILD
Sbjct: 73 LVQKALAELFINATLDLIEGSMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILD 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG LVRN+ERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 133 DDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFN 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL DP L ++W RFLP F+ K++ ++K
Sbjct: 193 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQ 251
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K++ YTPFPPP SKIDK L +GE+FL E +K KK E + KQAE ++ + +
Sbjct: 252 PKKKRVKKEYTPFPPPQPESKIDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEE 311
Query: 239 RDAAFIPPEE 248
R AF+PP+E
Sbjct: 312 RKKAFVPPKE 321
>gi|325974458|ref|NP_001038790.2| KRR1 small subunit processome component homolog [Danio rerio]
Length = 376
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/250 (57%), Positives = 193/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E ++ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILD
Sbjct: 73 LVQKALAELFINATLDLIEGSMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILD 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG LVRN+ERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 133 DDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFN 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL DP L ++W RFLP F+ K++ ++K
Sbjct: 193 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQ 251
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K++ YTPFPPP SKIDK L +GE+FL E +K KK E + KQAE ++ + +
Sbjct: 252 PKKKRVKKEYTPFPPPQPESKIDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEE 311
Query: 239 RDAAFIPPEE 248
R AF+PP+E
Sbjct: 312 RKKAFVPPKE 321
>gi|225713566|gb|ACO12629.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 211/287 (73%), Gaps = 3/287 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ L EY + EL+L+EGSM V TTRKT DP+II+KARD+++LL+RSVP A+K+L+
Sbjct: 64 LILKTLGEYNLKGELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARSVPYEHALKVLN 123
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE DIIKIGN++ ++RFVKRRQ L+GPN STLK++E+LT CYILVQGNTV+A+G ++
Sbjct: 124 DEFGSDIIKIGNIIVKRDRFVKRRQRLIGPNGSTLKSIELLTQCYILVQGNTVSAVGPYQ 183
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIV D M N +HP+Y+IK LM+K+EL KD L NENW+RFLPKF+ +N+ ++K
Sbjct: 184 GLKQVRRIVIDTMNN-IHPIYNIKALMIKRELMKDEKLKNENWERFLPKFENQNISKRKQ 242
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+KK YTPFPPP SKIDK L +GEYFL E +K+ KK QE++EKQ E T + + K
Sbjct: 243 PLKKKKKKEYTPFPPPMPESKIDKELATGEYFLKEGEKKLKKLQEQREKQTEATLKRQEK 302
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAE 285
R A+I PEE + ED D+ +++K KK +K+K+ E
Sbjct: 303 RSKAYIAPEEKEPKKKHVQEDDFVDLEKFKQNVKSSQKKNKKRKYNE 349
>gi|109150093|gb|AAI17594.1| Zgc:136398 [Danio rerio]
Length = 376
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/250 (57%), Positives = 193/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E ++ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILD
Sbjct: 73 LVQKALAELFINATLDLIEGSMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILD 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG LVRN+ERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 133 DDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFN 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL DP L ++W RFLP F+ K++ ++K
Sbjct: 193 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQ 251
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K++ YTPFPPP SKIDK L +GE+FL E +K KK E + KQAE ++ + +
Sbjct: 252 PKKKRVKKEYTPFPPPQPESKIDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEE 311
Query: 239 RDAAFIPPEE 248
R AF+PP+E
Sbjct: 312 RKKAFVPPKE 321
>gi|410046996|ref|XP_003952293.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Pan troglodytes]
Length = 381
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/270 (55%), Positives = 204/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYF +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFXKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E EA +T DVA++
Sbjct: 317 RNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|291230085|ref|XP_002735003.1| PREDICTED: dribble-like, partial [Saccoglossus kowalevskii]
Length = 336
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 206/276 (74%), Gaps = 5/276 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
V+ L ++ + L+++EGSMTV+TTRKT DP+IIVKARD+I+LL+RSVPA QA+++L+
Sbjct: 57 FVEKTLSDHNIKASLDVIEGSMTVTTTRKTWDPFIIVKARDMIKLLARSVPAEQAVRVLE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M +IIKIG+LVRNKERFVKRRQ L+GPN STLKA+E+LTGCY++VQGNTVAA+G +
Sbjct: 117 DGMAAEIIKIGSLVRNKERFVKRRQRLIGPNGSTLKAIELLTGCYVMVQGNTVAALGPYN 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF--KKKNVKQK 178
GLK VR++ D M+N +HP+Y+IK LM+K+EL KD L NE+WDRFLP F K ++ +++
Sbjct: 177 GLKHVRKLATDTMKN-VHPIYNIKTLMIKRELSKDEQLKNESWDRFLPNFHPKSQSKRKQ 235
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K + KK YTPFPPP SK+DK + SGEYF+ E ++++K +E++++ E + + +
Sbjct: 236 PKKKRTKKQYTPFPPPQPESKLDKEIASGEYFMKEHQRKAKLREERKQRHVEADVKRQER 295
Query: 239 RDAAFIPPEEP--SRQNSCEAEDKTNDVAAMAKSLK 272
R+ FIPP+EP +Q S + E + + A LK
Sbjct: 296 RNKPFIPPKEPVVKKQKSEQPEKTSTKIDIEALKLK 331
>gi|449272282|gb|EMC82271.1| KRR1 small subunit processome component like protein, partial
[Columba livia]
Length = 353
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/270 (54%), Positives = 207/270 (76%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP Q +IL
Sbjct: 51 LVQKALDEHYVNATLDLIEGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQVFRILQ 110
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVR ++ F+KRR L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 111 DDVACDIIKIGSLVRKRDTFIKRRGRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 170
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLPKFK+KN+K++K
Sbjct: 171 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDPELRSQSWERFLPKFKRKNLKKRKE 229
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL ER+K+ K+ +E + KQA+ T + + +
Sbjct: 230 PKKKNTKKEYTPFPPPQPESQIDKELASGEYFLKERQKKRKRMEEIKAKQADATKKRQEE 289
Query: 239 RDAAFIPP-EEPSRQNSCEAEDKTNDVAAM 267
R+ AFIPP E+P + + +K D+ A+
Sbjct: 290 RNKAFIPPKEKPVVKTKKASTEKKVDIEAI 319
>gi|171683573|ref|XP_001906729.1| hypothetical protein [Podospora anserina S mat+]
gi|170941746|emb|CAP67400.1| unnamed protein product [Podospora anserina S mat+]
Length = 413
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/252 (60%), Positives = 193/252 (76%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L++YG+ L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 150 LVTKSLEKYGIDAVLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILE 209
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDIIKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG FK
Sbjct: 210 DGMACDIIKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFK 269
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK+VRR+VED MQN +HP+Y IK LM+K+EL KDPALA E+W R+LP FKK+ + ++
Sbjct: 270 GLKEVRRVVEDTMQN-VHPIYLIKELMIKRELAKDPALAQEDWSRYLPNFKKRTLSKRHK 328
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
V K KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK +K E K
Sbjct: 329 PHVVTDKSKKTYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRMAEQERAEKSKQKKEEKK 388
Query: 237 RKRDAAFIPPEE 248
R+R+ ++PPEE
Sbjct: 389 REREKEYVPPEE 400
>gi|290562854|gb|ADD38821.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/287 (54%), Positives = 211/287 (73%), Gaps = 3/287 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ L EY + EL+L+EGSM V TTRKT DP+II+KARD+++LL+RSVP A+K+L+
Sbjct: 64 LILKTLGEYNLKGELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARSVPYEHALKVLN 123
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE DIIKIGN++ ++RFVKRRQ L+GPN STLK++E+LT CY+LVQGNTV+A+G ++
Sbjct: 124 DEFGSDIIKIGNIIVKRDRFVKRRQRLIGPNGSTLKSIELLTQCYVLVQGNTVSAVGPYQ 183
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIV D M N +HP+Y+IK LM+K+EL KD L NENW+RFLPKF+ +N+ ++K
Sbjct: 184 GLKQVRRIVIDTMNN-IHPIYNIKALMIKRELMKDEKLKNENWERFLPKFENQNISKRKQ 242
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+KK YTPFPPP SKIDK L +GEYFL E +K+ KK QE++EKQ E T + + K
Sbjct: 243 PLKKKKKKEYTPFPPPMPESKIDKELATGEYFLKEGEKKLKKLQEQREKQTEATLKRQEK 302
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAE 285
R A+I PEE + ED D+ +++K KK +K+K+ E
Sbjct: 303 RSKAYIAPEEKEPKKKHVQEDDFVDLEKFKQNVKSSQKKNKKRKYNE 349
>gi|432959058|ref|XP_004086167.1| PREDICTED: KRR1 small subunit processome component homolog [Oryzias
latipes]
Length = 381
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 153/283 (54%), Positives = 207/283 (73%), Gaps = 6/283 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL + + L+L+EGSMTV TT+KT DPY IV+ARDLI+LL+RSVP QA++IL
Sbjct: 76 LVEKALGDSHIKASLDLIEGSMTVCTTKKTFDPYAIVRARDLIKLLARSVPFEQAVRILQ 135
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG +VRN+ERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G +
Sbjct: 136 DDMACDIIKIGTMVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPYN 195
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL +DP L +NW+RF+PKF+ KN+ ++K
Sbjct: 196 GLKEVRKVVMDTMKN-IHPIYNIKTLMIKQELSRDPELRTQNWERFMPKFRHKNLSKRKE 254
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPP SKIDK L +GE+FL E K+ KK +E + KQAE + + +
Sbjct: 255 PKKKSVKKEYTPFPPSQPESKIDKELATGEFFLRESVKKRKKMEEIKVKQAEVLTKRQEE 314
Query: 239 RDAAFIPP-EEPSRQNSCEA--EDKTNDVAAMAKSLKEKAKKL 278
R+ AFIPP E+P + S +A E K + A K K K K+L
Sbjct: 315 RNKAFIPPKEKPLMKKSAKASTEAKLDIEAIKDKVRKAKTKRL 357
>gi|83715980|ref|NP_001032908.1| KRR1 small subunit processome component homolog [Bos taurus]
gi|78174356|gb|AAI07551.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Bos taurus]
Length = 382
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 195/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL
Sbjct: 78 LVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
LK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 VLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 316
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 317 RNKAFIPPKE 326
>gi|281351734|gb|EFB27318.1| hypothetical protein PANDA_009447 [Ailuropoda melanoleuca]
Length = 306
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 195/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ +S L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 50 LVQKALNEHHISATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 109
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+ +G F
Sbjct: 110 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFS 169
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ--K 178
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV + +
Sbjct: 170 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKCKE 228
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KK YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 229 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEE 288
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 289 RNKAFIPPKE 298
>gi|85106412|ref|XP_962180.1| 90S preribosome/SSU processome component KRR1 [Neurospora crassa
OR74A]
gi|28923778|gb|EAA32944.1| ribosomal RNA assembly protein mis3 [Neurospora crassa OR74A]
gi|336471628|gb|EGO59789.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2508]
gi|350292741|gb|EGZ73936.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2509]
Length = 320
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 151/252 (59%), Positives = 194/252 (76%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL ++G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 57 LITKALDKHGITAVLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDIIKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG FK
Sbjct: 117 DGMACDIIKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK+VRR+VED M N +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + +++
Sbjct: 177 GLKEVRRVVEDTMNN-VHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRV 235
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
V K KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK +K E K
Sbjct: 236 PHVVNDKTKKNYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRVAEQERAEKAKQKKEEKK 295
Query: 237 RKRDAAFIPPEE 248
R+R+ ++PPEE
Sbjct: 296 REREKEYVPPEE 307
>gi|71896953|ref|NP_001025915.1| KRR1 small subunit processome component homolog [Gallus gallus]
gi|53131247|emb|CAG31803.1| hypothetical protein RCJMB04_11h12 [Gallus gallus]
Length = 381
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 144/250 (57%), Positives = 195/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL
Sbjct: 73 LVQKALSEHYVNATLDLIEGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQ 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRN+E FVK +GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 133 DDVACDIIKIGSLVRNRESFVKEEDDFLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +NW+RFLPKFK+KN+K++K
Sbjct: 193 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLKKRKE 251
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL E +K+ K+ +E + KQA+ + + +
Sbjct: 252 PKKKNIKKEYTPFPPPQPESQIDKELASGEYFLKESQKKRKRVEEIKAKQADAVKKRQEE 311
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 312 RNKAFIPPKE 321
>gi|229367208|gb|ACQ58584.1| KRR1 small subunit processome component homolog [Anoplopoma
fimbria]
Length = 347
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 155/295 (52%), Positives = 211/295 (71%), Gaps = 12/295 (4%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E + L+L+EGS+TV TT+KT DPY I++AR LI+LL+RSVP QA++IL
Sbjct: 39 LVEKALGESHIKTTLDLIEGSITVCTTKKTYDPYAILRARGLIKLLARSVPFEQAVRILQ 98
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG LVRN+ERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F
Sbjct: 99 DDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFN 158
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L ++W+RFLPKF+ KN+ +++
Sbjct: 159 GLKEVRKVVMDTMRN-IHPIYNIKTLMIKQELSKDPDLRMQSWERFLPKFRHKNLAKRRE 217
Query: 181 --KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KK YTPFPP S +DK L +GE+FL E K+ KK +E + KQAE + + +
Sbjct: 218 PKKKSTKKEYTPFPPSQPESTVDKELATGEFFLRESVKKRKKMEEIKVKQAEALTKKQEE 277
Query: 239 RDAAFIPPEEP---SRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKF-AENINP 289
R+ AFIPP+E + N E K D+ A +KEK +K + +K A +NP
Sbjct: 278 RNKAFIPPKEKPLMKKTNKAPTEGKL-DIEA----IKEKVRKAKTKKLGAPPVNP 327
>gi|431892069|gb|ELK02516.1| KRR1 small subunit processome component like protein [Pteropus
alecto]
Length = 380
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 194/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+ DK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQTDKELASGEYFLKASQKKRQKMEAIKAKQAEVLSKRQEE 316
Query: 239 RDAAFIPPEE 248
R AFIPP+E
Sbjct: 317 RKKAFIPPKE 326
>gi|328856064|gb|EGG05187.1| hypothetical protein MELLADRAFT_48934 [Melampsora larici-populina
98AG31]
Length = 428
Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 192/294 (65%), Gaps = 53/294 (18%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
L+ +GV+C L+LVEGSMTV TTRKT DP+II+KARDLI+LL+RSVP QA+KIL+D +
Sbjct: 87 VLETHGVACVLDLVEGSMTVKTTRKTCDPFIILKARDLIKLLARSVPITQAVKILEDGVA 146
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CD++KIGN++RNKERFVKRRQ ++GP+ STLKA+E+LTGCYILVQG TV+ MG ++GLK
Sbjct: 147 CDVVKIGNIIRNKERFVKRRQRILGPSGSTLKAIELLTGCYILVQGTTVSVMGPYRGLKT 206
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVKQKKVKSK 183
VRRIV DCM+N +HPVYHIK LM+K+EL KDP L NENWDRFLP F ++K KQK
Sbjct: 207 VRRIVIDCMKN-IHPVYHIKELMIKRELAKDPKLVNENWDRFLPNFSQRKKAKQKTTAEH 265
Query: 184 E-----------------------------------------------KKPYTPFPPPPQ 196
+ KK YTPFPPP
Sbjct: 266 QAIEESSHSNSNPNPQASSSKSTVLQTSQSDAFNESIAQQKQKPKKIEKKKYTPFPPPQL 325
Query: 197 PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK--RDAAFIPPEE 248
PSKID+ LESGEYFL R+K K E + K+ ++ N RK + F PP E
Sbjct: 326 PSKIDQQLESGEYFLKSREK--KTILETKRKEGQEAISNLRKLNKQTVFNPPME 377
>gi|322785487|gb|EFZ12156.1| hypothetical protein SINV_05919 [Solenopsis invicta]
Length = 339
Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 209/279 (74%), Gaps = 5/279 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+ + E++L+EGSMTV TTRKT DPYI++KARD+I+L++RSVP QA+K+L
Sbjct: 60 LIQKALAEHHIKVEMDLIEGSMTVKTTRKTWDPYIVIKARDMIKLMARSVPFEQAVKVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ D+IKI + VRNKE+FVKRRQ L+GPN LK++E+LT CY++VQG TV+A+G +K
Sbjct: 120 DDIAADVIKISSFVRNKEKFVKRRQRLIGPNGCNLKSIELLTNCYVVVQGQTVSALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQK 178
G++QVR++V+D M+N +HPVY +K LM+K+EL K+P L NENW+RFLPK+ KN+ +++
Sbjct: 180 GVQQVRKLVQDTMKN-IHPVYSLKTLMLKRELAKNPTLKNENWERFLPKYNSKNISKRKE 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K KEKKPYTPFPPP Q SK+DK + SGE+FL E +K +K+ +E++ K E T + +
Sbjct: 239 PKKKKEKKPYTPFPPPQQESKLDKAMASGEFFLKEEQKRAKRKKEQEAKHEEATKRRQER 298
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKK 277
R F+PPEE ++ D D+A + K +++ KK
Sbjct: 299 RAQVFMPPEEKPVESETAKTD--IDIAEIKKKVQQGLKK 335
>gi|118789667|ref|XP_317574.3| AGAP007912-PA [Anopheles gambiae str. PEST]
gi|116123327|gb|EAA12217.4| AGAP007912-PA [Anopheles gambiae str. PEST]
Length = 348
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 152/283 (53%), Positives = 203/283 (71%), Gaps = 6/283 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL + + +L+L+ G+MTV TTRKT DPYII+KARDLI+LLSRSVP QA+K+L+
Sbjct: 66 LVVKALSTHHIKADLDLILGNMTVRTTRKTWDPYIILKARDLIKLLSRSVPFEQAVKVLE 125
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ CDIIK+ NLV NKE+FVKRR L+GPN TLK+LE+LT CY+LVQG TV+A+G +K
Sbjct: 126 DEIGCDIIKVKNLVANKEKFVKRRSRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYK 185
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ VR++VE+ M+N +HP+Y+IK LM+K+EL KD L ENW+RFLP+F+ KN ++
Sbjct: 186 GLQCVRKVVEETMKN-IHPIYNIKALMIKRELMKDENLREENWERFLPRFQSKNTTKRNK 244
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
KK YTPFPPP Q SKIDK L SGEYFL++ +K SKK QE+ +K+ K +
Sbjct: 245 PKVVKKKKEYTPFPPPLQDSKIDKQLASGEYFLTDEQKRSKKRQEQVDKEKRDATVQKER 304
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 281
R+ F+ PEE +R+ A+ + D KSLK K K K+
Sbjct: 305 RERDFVAPEETNRRT---AKANSADTPLDVKSLKGKIAKANKR 344
>gi|240849184|ref|NP_001155707.1| KRR1 small subunit processome component homolog [Acyrthosiphon
pisum]
gi|239788163|dbj|BAH70773.1| ACYPI007346 [Acyrthosiphon pisum]
Length = 291
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 198/248 (79%), Gaps = 1/248 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ +L +Y + +L+L+EGSM+V TTRKT DP I+KARDLI+LLSRSVP A+++++
Sbjct: 45 LVQNSLSKYHIKADLDLLEGSMSVRTTRKTWDPASILKARDLIKLLSRSVPYEHAVRVME 104
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M DIIKIG++VRN+++FVKRRQ L+GP TLK++E+LT CY+LVQG TVAA+G FK
Sbjct: 105 DDMAADIIKIGSMVRNRDKFVKRRQRLIGPGGCTLKSIELLTNCYMLVQGQTVAALGPFK 164
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVRRIV D M+N +HP+Y+IK LM+K+ELE++P L NENWDRFLP FK KNV +KK
Sbjct: 165 GLQQVRRIVTDTMKN-VHPIYNIKALMIKRELERNPKLKNENWDRFLPNFKPKNVPKKKS 223
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K KKPYTPFPP P SKIDKLLESGEYFL E +K+ +K + K++KQ E + + KR+
Sbjct: 224 TKKPKKPYTPFPPAPAESKIDKLLESGEYFLKEDEKQKRKKKVKEDKQKEAKIKREAKRN 283
Query: 241 AAFIPPEE 248
AFIPP E
Sbjct: 284 MAFIPPVE 291
>gi|242024225|ref|XP_002432529.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
gi|212517981|gb|EEB19791.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
Length = 341
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 147/249 (59%), Positives = 191/249 (76%), Gaps = 3/249 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ L EYG+ EL+++EGSM V TTRKT DPYII+KARD+I+LLSRSVP QAI++L+D
Sbjct: 60 IQKVLNEYGIKGELDVIEGSMKVKTTRKTWDPYIIIKARDMIKLLSRSVPFEQAIRVLED 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDIIKIG+LVRN+E+F+KRRQ ++GP TLK++E+LT CY+LVQG TVAA+G +KG
Sbjct: 120 DIFCDIIKIGSLVRNREKFIKRRQRIIGPGGCTLKSIELLTNCYVLVQGQTVAALGPYKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
L +VR IVE M N MHP+Y IK LM+K+EL KDP L NENW+RFLPKFK K++ +KK
Sbjct: 180 LMEVRSIVEKTMFN-MHPIYKIKELMIKRELAKDPILKNENWERFLPKFKNKHLPKKKKP 238
Query: 182 SKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+K+ YTPFPPP SKIDK LESGEYF++E +K+ K+ +E E+ E + KR
Sbjct: 239 KNKKEKKPYTPFPPPQTESKIDKQLESGEYFMTEAQKQQKRKREINERHEEAKKRREEKR 298
Query: 240 DAAFIPPEE 248
FIPPEE
Sbjct: 299 KLPFIPPEE 307
>gi|407916980|gb|EKG10307.1| K-like protein [Macrophomina phaseolina MS6]
Length = 262
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 148/231 (64%), Positives = 181/231 (78%), Gaps = 5/231 (2%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
MTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KILDD CDIIKI NLVRNKERFV
Sbjct: 1 MTVKTTRKTWDPAAILKARDLIKLLARSVPAPQALKILDDGTACDIIKIRNLVRNKERFV 60
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 141
KRRQ ++GP+ STLKALE+LTGCYILVQGNTVAAMG +KGLK+VRR+VEDCM N +HP+Y
Sbjct: 61 KRRQRILGPDGSTLKALELLTGCYILVQGNTVAAMGGYKGLKEVRRVVEDCMAN-IHPIY 119
Query: 142 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQP 197
+IK LM+K+EL KDP L NE+WDRFLP FKK++ ++ KV K KK YTPFPPP +
Sbjct: 120 YIKELMIKRELAKDPELVNESWDRFLPNFKKRHTAKRRVPHKVTDKSKKVYTPFPPPQEK 179
Query: 198 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
SK+D +ESGEYFL ++ KE K+ + ++ EK E ++ R F P+E
Sbjct: 180 SKVDLQIESGEYFLGKQAKERKEKERREAAMREKMEEKRKARAKEFEAPKE 230
>gi|296212420|ref|XP_002752822.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Callithrix jacchus]
Length = 380
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 205/270 (75%), Gaps = 4/270 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL
Sbjct: 78 LVQKALIEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 256
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +
Sbjct: 257 PKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEE 316
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
R+ AFIPP+E +A +T DVA++
Sbjct: 317 RNKAFIPPKEKPVVKPKKASTETKIDVASI 346
>gi|194758793|ref|XP_001961643.1| GF14827 [Drosophila ananassae]
gi|378548392|sp|B3MM49.1|KRR1_DROAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190615340|gb|EDV30864.1| GF14827 [Drosophila ananassae]
Length = 343
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 190/250 (76%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ + E+ + EL+LVEGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L
Sbjct: 60 LVEQCVAEHHLKAELDLVEGSMVVKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTVAA+G +K
Sbjct: 120 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 180 GLQQVRDIVVETMNN-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQ 238
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K YTPFPP SK+ K L SGEYFL++ +K++K+ QE+ KQA+ +
Sbjct: 239 PKVKKAKKEYTPFPPAQPESKVGKQLASGEYFLNKEQKQAKRQQERSAKQADAAKRQDER 298
Query: 239 RDAAFIPPEE 248
R+ F+PP E
Sbjct: 299 RNKDFVPPTE 308
>gi|384500400|gb|EIE90891.1| ribosomal RNA assembly protein mis3 [Rhizopus delemar RA 99-880]
Length = 290
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 187/221 (84%), Gaps = 2/221 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL+++G++C L+LVEGSMTV TTRK+ DPY I+KARDLI+LL+RSVP PQAIKI+D
Sbjct: 70 LVTKALEKWGIACVLDLVEGSMTVKTTRKSWDPYSILKARDLIKLLARSVPFPQAIKIMD 129
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKIGN+ RNKERFVKRRQ L+GPN STLKA+E+LT CY+++QGNTV+AMG +K
Sbjct: 130 DGVACDIIKIGNITRNKERFVKRRQRLIGPNGSTLKAIELLTKCYMMIQGNTVSAMGPYK 189
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK +RRIV DCM+N +HP+YHIK LM+K+EL KDP LA E+WDRFLPKFKKKN+K KK
Sbjct: 190 GLKDLRRIVLDCMKN-IHPIYHIKELMIKRELAKDPKLATESWDRFLPKFKKKNIKSKKK 248
Query: 181 KSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKK 220
++ K YTPFPP P SK+D LESGEYF++++KK+ +K
Sbjct: 249 VIEKPKKEYTPFPPAPVKSKVDLQLESGEYFMNKQKKKQEK 289
>gi|331249379|ref|XP_003337307.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316297|gb|EFP92888.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 194/284 (68%), Gaps = 36/284 (12%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
L+++GV+C LNLVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP QA+KILDD +
Sbjct: 87 VLEQHGVACVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVPITQAVKILDDNVA 146
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CD+IKIGN++RNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG TV+AMG +KGLK
Sbjct: 147 CDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQGTTVSAMGPYKGLKV 206
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS-- 182
VRRIV DCM+N +HP+YHIK LM+K+EL K+P LA ENWDRFLP F K+ ++ +
Sbjct: 207 VRRIVIDCMKN-IHPIYHIKELMIKRELAKNPKLAEENWDRFLPNFTKRKRAKQAKAAKV 265
Query: 183 KEKKP--------------------------------YTPFPPPPQPSKIDKLLESGEYF 210
E++P YTPFPPP P KID LESGEYF
Sbjct: 266 SEQQPSVGRSVQDTSQAAAFRSEQAKQKSMQEKKKKKYTPFPPPQMPRKIDLELESGEYF 325
Query: 211 LSERKKESKKWQEKQEKQAEKTAENKRKRD-AAFIPPEEPSRQN 253
+ + +S++ E ++ + + N RK + A PP E SR N
Sbjct: 326 KKKARTKSERADESKKAEGREIVSNLRKLNKAQDQPPAEESRAN 369
>gi|331252066|ref|XP_003338607.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309317597|gb|EFP94188.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 194/284 (68%), Gaps = 36/284 (12%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
L+++GV+C LNLVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP QA+KILDD +
Sbjct: 87 VLEQHGVTCVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVPITQAVKILDDNVA 146
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CD+IKIGN++RNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG TV+AMG +KGLK
Sbjct: 147 CDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQGTTVSAMGPYKGLKV 206
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS-- 182
VRRIV DCM+N +HP+YHIK LM+K+EL K+P LA ENWDRFLP F K+ ++ +
Sbjct: 207 VRRIVIDCMKN-IHPIYHIKELMIKRELAKNPKLAEENWDRFLPNFTKRKRAKQAKAAKV 265
Query: 183 KEKKP--------------------------------YTPFPPPPQPSKIDKLLESGEYF 210
E++P YTPFPPP P KID LESGEYF
Sbjct: 266 SEEQPSVGRSVQDTSQAAAFRSEQAKQKSMQEKKKKKYTPFPPPQMPRKIDLELESGEYF 325
Query: 211 LSERKKESKKWQEKQEKQAEKTAENKRKRD-AAFIPPEEPSRQN 253
+ + +S++ E ++ + + N RK + A PP E SR N
Sbjct: 326 KKKARTKSERADESKKAEGREIVSNLRKLNKAQDQPPAEESRAN 369
>gi|170593983|ref|XP_001901743.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
gi|158590687|gb|EDP29302.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
Length = 350
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 152/287 (52%), Positives = 213/287 (74%), Gaps = 14/287 (4%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ +E+ + +L+++EG++ V TTRKT DPYII+KARD+++L+SRSVP QA+++L
Sbjct: 65 LIQKVFEEHFLKADLDVLEGTVVVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAVRVLQ 124
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ +IIKI ++V NKERFVKRR L+G +TLKA+E+LT CYI+VQG+TVAA+G ++
Sbjct: 125 DDTASEIIKISSMVANKERFVKRRARLIGNEGATLKAIELLTKCYIMVQGSTVAAVGPYE 184
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLK VR IVEDCM N +HP+Y+IK LM+K+EL KD L NENWDRFLPKFKKK
Sbjct: 185 GLKHVRMIVEDCMNN-IHPIYNIKTLMIKRELMKDENLKNENWDRFLPKFKKKVQPSQST 243
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K + K+K YTPFPPPP SKIDK LESGEYFLSE+ ++ +K EK+ KQ EK
Sbjct: 244 NQAKKKKAARWKKKAEYTPFPPPPVMSKIDKQLESGEYFLSEKTRQMEKRNEKRTKQMEK 303
Query: 232 TAENKRKRDAAFIPPEEPSR-QNSCEAEDKTNDVAAMAKSLKEKAKK 277
TAE K++R + ++PP+ +R +NS + + N+V ++LK+K +K
Sbjct: 304 TAERKKQRASEYMPPDGKTRPKNSYK---RANEVPIDIENLKKKVRK 347
>gi|391344944|ref|XP_003746754.1| PREDICTED: KRR1 small subunit processome component homolog
[Metaseiulus occidentalis]
Length = 280
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 141/227 (62%), Positives = 178/227 (78%), Gaps = 5/227 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L E+GV EL+++EGSM V TT++ DPYII+KARDLI+LLSRSVP QA +IL+
Sbjct: 55 LVKKTLGEHGVEAELDVIEGSMIVKTTKQMWDPYIIIKARDLIKLLSRSVPFEQAARILE 114
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG +VR K+RFVKRRQ LVGPN +TLKA+EILT CY+LVQGNTV+ +G ++
Sbjct: 115 DDIACDIIKIGGMVRRKDRFVKRRQRLVGPNGATLKAMEILTDCYVLVQGNTVSTLGPYR 174
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQ 177
GLKQVR+IVEDCM N +HP+YHIK +M+K+EL KDP L +ENW+RFLPK KN+ KQ
Sbjct: 175 GLKQVRKIVEDCMNN-IHPIYHIKTMMIKRELAKDPELKDENWERFLPKLVNKNISKRKQ 233
Query: 178 KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 224
+VK + K Y PFPP P SKID LE+GEYFL E K +K +E+
Sbjct: 234 PRVK-RTKGEYNPFPPAPPKSKIDTELETGEYFLKEVDKRKRKRKEQ 279
>gi|405964866|gb|EKC30308.1| KRR1 small subunit processome component-like protein [Crassostrea
gigas]
Length = 885
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 149/250 (59%), Positives = 196/250 (78%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L ++ + EL+LVEGSMTV TT+KT DPYII+KARDL++LL+RSVP QA+++L+
Sbjct: 66 LVKKTLGDHNIKAELDLVEGSMTVRTTKKTWDPYIIIKARDLLKLLARSVPYEQAVRVLE 125
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIG+L RNKERFVKRRQ L+GPN STLKA+EILT CYILVQGNTV+A+G +K
Sbjct: 126 DDTACDIIKIGSLTRNKERFVKRRQRLIGPNGSTLKAIEILTDCYILVQGNTVSALGPYK 185
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL++VR+IVED M+N +HP+Y+IK LM+KKEL KDP L NENW+RF+PKFK KN+ ++K
Sbjct: 186 GLREVRKIVEDTMKN-IHPIYNIKTLMIKKELAKDPELRNENWERFIPKFKSKNISKRKQ 244
Query: 181 KSKEKKPYTPFPPPPQP--SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K++ P PP SK+DK L SGEYFL +K++K QEK+EKQ + +++ K
Sbjct: 245 PKKKRVKKPYTPFPPPQPESKVDKELASGEYFLKPHQKKAKIQQEKKEKQLKAVQKSQEK 304
Query: 239 RDAAFIPPEE 248
R AF+ P+E
Sbjct: 305 RAKAFVAPKE 314
>gi|348524604|ref|XP_003449813.1| PREDICTED: KRR1 small subunit processome component homolog
[Oreochromis niloticus]
Length = 386
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 191/250 (76%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E + L+L+EGSMTV TT+KT DPY IV+ARDLI+LL+RSVP QA++IL
Sbjct: 76 LVEKALGEVHIKPSLDLIEGSMTVCTTKKTFDPYAIVRARDLIKLLARSVPFEQAVRILQ 135
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIG +VR++ERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G +
Sbjct: 136 DDTACDIIKIGTMVRSRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPYS 195
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +NW+RFLPKF+ KN+ ++K
Sbjct: 196 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELSKDPELRMQNWERFLPKFRHKNLAKRKE 254
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP SK+D+ L +GE+FL E K+ KK +E + KQA + + +
Sbjct: 255 PKKKSVKKEYTPFPPPQPESKVDQELATGEFFLRESVKKRKKMEEIKVKQATALTKKQEE 314
Query: 239 RDAAFIPPEE 248
R+ AFIPP+E
Sbjct: 315 RNKAFIPPKE 324
>gi|198418943|ref|XP_002125952.1| PREDICTED: similar to KRR1 protein [Ciona intestinalis]
Length = 333
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 210/282 (74%), Gaps = 4/282 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+VK L EY + L+L+EGSMTV T+R+T DPY I+ ARDLI++L+RSVP QA++I +
Sbjct: 52 IVKNKLSEYKIEGILDLIEGSMTVKTSRRTWDPYAILNARDLIKMLARSVPIEQAVRIFE 111
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D CDIIKIG++VRN+ERFVKRRQ LVGPN +TLKALE+LTGCYILVQGNT +GS
Sbjct: 112 DNTFCDIIKIGSMVRNRERFVKRRQRLVGPNGATLKALELLTGCYILVQGNTTTVLGSHA 171
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+ R+++ D M+N +HPVY+IK LM+K+EL KDP L NE+WDRFLPKFK+KNVKQK+
Sbjct: 172 GLKEARKVILDTMKN-IHPVYNIKSLMIKRELSKDPNLKNESWDRFLPKFKRKNVKQKRK 230
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KEKKPYTPFPPP SK+DK + SGEYFL E +++ KK +E++EKQ T+E K+KR
Sbjct: 231 PRKEKKPYTPFPPPQPESKVDKEIASGEYFLKEAERKRKKDEERKEKQGVATSERKQKRA 290
Query: 241 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQK 282
+ IPP+E + E T DV +K K KL+ +K
Sbjct: 291 RSLIPPQEKKVE---EKTSVTKDVDVEILKMKVKQSKLKTRK 329
>gi|312080672|ref|XP_003142700.1| dribble-PA [Loa loa]
gi|307762133|gb|EFO21367.1| hypothetical protein LOAG_07118 [Loa loa]
Length = 382
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/260 (56%), Positives = 195/260 (75%), Gaps = 10/260 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ A +E+ + +L+L+EG+M V TTRKT DPYII+KARD+++L+SRSVP QAI++L
Sbjct: 65 LVQKAFEEHFLKVDLDLLEGTMVVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAIRVLQ 124
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ +IIKI ++V NKERFVKRR L+G +TLKA+E+LT CY++VQG+TVAA+G ++
Sbjct: 125 DDTASEIIKISSMVANKERFVKRRARLIGNEGATLKAIELLTKCYVMVQGSTVAAVGPYE 184
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLK VR IVEDCM N +HP+Y+IK LM+K+EL KD L NENWDRFLPKFKKK
Sbjct: 185 GLKHVRVIVEDCMNN-IHPIYNIKTLMIKRELMKDENLKNENWDRFLPKFKKKVQPSQLT 243
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K + K+K YTPFPPPP SKID+ LESGEYFLSER K+ +K EK+ KQ EK
Sbjct: 244 NQAKKKKAARWKKKAGYTPFPPPPVMSKIDRQLESGEYFLSERTKQMEKRNEKRTKQLEK 303
Query: 232 TAENKRKRDAAFIPPEEPSR 251
T E K++R + F P+ +R
Sbjct: 304 TVERKKQRASEFTLPDGKAR 323
>gi|336258379|ref|XP_003344005.1| 90S preribosome/SSU processome component KRR1 [Sordaria macrospora
k-hell]
gi|380087230|emb|CCC14406.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 323
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/252 (59%), Positives = 192/252 (76%), Gaps = 5/252 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL + G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 57 LITKALDKQGITAVLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDIIKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG FK
Sbjct: 117 DGMACDIIKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK+VRR+VED M N +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + +++
Sbjct: 177 GLKEVRRVVEDTMNN-VHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRV 235
Query: 180 ---VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
V K KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK K E K
Sbjct: 236 PHVVSDKAKKNYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRVAEQERAEKAKAKKEEKK 295
Query: 237 RKRDAAFIPPEE 248
R+R+ ++PPEE
Sbjct: 296 REREKEYVPPEE 307
>gi|66359348|ref|XP_626852.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
gi|46228137|gb|EAK89036.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
Length = 358
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/252 (59%), Positives = 191/252 (75%), Gaps = 8/252 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-- 59
++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP QA++IL
Sbjct: 75 IRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVPFHQAVRILGE 134
Query: 60 ---DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 116
D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+LVQG TV+ +
Sbjct: 135 GEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYVLVQGQTVSVI 192
Query: 117 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
GS+K LK VRRIVEDCM N +HPVYHIK LM+K+ELEKD L ENWDRFLPKFK K VK
Sbjct: 193 GSYKSLKLVRRIVEDCMNN-IHPVYHIKELMIKRELEKDERLRGENWDRFLPKFKNKCVK 251
Query: 177 QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+ +Q EK E
Sbjct: 252 RKVKKQIKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKERISEQKEKKNEKH 311
Query: 237 RKRDAAFIPPEE 248
+R+ +IPP E
Sbjct: 312 MEREKMYIPPNE 323
>gi|157108481|ref|XP_001650245.1| hiv-1 rev binding protein [Aedes aegypti]
gi|108884005|gb|EAT48230.1| AAEL000708-PA [Aedes aegypti]
Length = 349
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/271 (54%), Positives = 205/271 (75%), Gaps = 6/271 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL + + EL+L++G+MTV TTR T DP+II+KARDLI+LLSRSVP QA+K+LD
Sbjct: 66 LVEKALDGHHLKAELDLIQGNMTVKTTRNTWDPFIILKARDLIKLLSRSVPFEQAVKVLD 125
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ CDIIKI NLVRNK +FVKRR L+GPN TLK+LE+LT CY+LVQG TV+A+G +K
Sbjct: 126 DEISCDIIKIKNLVRNKAKFVKRRNRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYK 185
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQK 178
GL+ VR++VE+ M+N +HP+Y+IK LM+K+EL KD L ENW+RFLPKF+ KN ++K
Sbjct: 186 GLQCVRKVVEETMKN-IHPIYNIKALMIKRELMKDDKLKEENWERFLPKFQSKNTTKRKK 244
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+ K+KK YTPFPPP SK+DK L SGEYFL+E +K++K+ QE++EK+ + + K++
Sbjct: 245 PKEQKKKKEYTPFPPPLLESKVDKELASGEYFLTEAQKKAKRMQERREKEQKSSNVQKQR 304
Query: 239 RDAAFIPPEE--PSRQNSCEAEDKTNDVAAM 267
R+ F+ P+E P + DK DV A+
Sbjct: 305 REKDFVAPDESKPKPKGDARNSDKV-DVKAL 334
>gi|195388432|ref|XP_002052884.1| GJ19628 [Drosophila virilis]
gi|378548397|sp|B4LTY6.1|KRR1_DROVI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194149341|gb|EDW65039.1| GJ19628 [Drosophila virilis]
Length = 343
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/283 (54%), Positives = 206/283 (72%), Gaps = 5/283 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ + E+ + EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L
Sbjct: 61 LVQQCVAEHHLKAELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQ 120
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 121 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 180
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 181 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQ 239
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K YTPFPP SKIDK L +GEYFL++ +K++KK QE+ KQAE + +
Sbjct: 240 PKNKKPKKEYTPFPPAQPESKIDKQLATGEYFLNKEQKQAKKQQERSVKQAEAAKKQDER 299
Query: 239 RDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 279
R+ F+PP E PS+ AE DV A+ L + KK R
Sbjct: 300 RNKDFVPPTEDAPSQSRKRPAETSKVDVDALKAKLMKANKKNR 342
>gi|225709722|gb|ACO10707.1| KRR1 small subunit processome component homolog [Caligus
rogercresseyi]
Length = 353
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 150/250 (60%), Positives = 194/250 (77%), Gaps = 3/250 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V L E+ + EL+L+EGSM V TTRKT DP+II+KARD+++LL+RSVP AIKILD
Sbjct: 69 LVVKTLGEHHLKAELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARSVPYEHAIKILD 128
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ D+IKIGNLV ++RFVKRRQ L+GPN STLK++E+LT CY+LVQGNTVAA+G ++
Sbjct: 129 DQFGSDVIKIGNLVPKRDRFVKRRQRLIGPNGSTLKSIELLTQCYVLVQGNTVAAVGPYQ 188
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQVRRIV D + N +HP+Y+IK LM+K+EL KD L NENW+RFLPKF+ KN+ ++K
Sbjct: 189 GLKQVRRIVLDTLNN-IHPIYNIKSLMIKRELMKDENLKNENWERFLPKFENKNISKRKQ 247
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+KK YTPFPPP SK+DK L SGEYFL E +K+ KK QE++EKQAE + + K
Sbjct: 248 PLKKKKKKEYTPFPPPMPESKLDKELASGEYFLKESEKKLKKLQERREKQAEAALKREAK 307
Query: 239 RDAAFIPPEE 248
R A+I P+E
Sbjct: 308 RSKAYIAPDE 317
>gi|324517589|gb|ADY46864.1| KRR1 small subunit processome component [Ascaris suum]
Length = 358
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 140/260 (53%), Positives = 189/260 (72%), Gaps = 10/260 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ + E+ + EL+++EG+M V TTRKT DPYI++KARD+++LL+RSVP QAI++L+
Sbjct: 72 LVQKTMDEHFLKAELDVLEGTMVVRTTRKTWDPYILIKARDVLKLLARSVPYEQAIRVLN 131
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKI ++V +KERFVKRR LVG N +TLKA+E+LT CY+++QG TVAA+G ++
Sbjct: 132 DDISCDIIKISSMVSSKERFVKRRARLVGNNGATLKAIELLTQCYVMIQGGTVAAVGPYQ 191
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK V IVEDCM N +HP+Y+IK LM+K+EL KD L NENWDRFLPKFKKK +
Sbjct: 192 GLKNVHTIVEDCMHN-IHPIYNIKTLMIKRELMKDDKLKNENWDRFLPKFKKKMQSSQST 250
Query: 181 KSKEKKP---------YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
+KK YTPFPPPP SKIDK LE+GEYF++ER + +K K+ +Q EK
Sbjct: 251 NQAKKKKAARWKRKAEYTPFPPPPTMSKIDKQLETGEYFMNERTRLLEKRNAKRARQNEK 310
Query: 232 TAENKRKRDAAFIPPEEPSR 251
E ++ R + F P EE R
Sbjct: 311 AVERQQTRASLFTPGEEKPR 330
>gi|294894848|ref|XP_002774982.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239880765|gb|EER06798.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 526
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/231 (63%), Positives = 176/231 (76%), Gaps = 2/231 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK L + + ELNLVEGSMTV TTRKT DPY I++ARDLI+LL+RSVP PQA KI+DD
Sbjct: 84 VKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSVPLPQAKKIMDD 143
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M CDIIK G LVRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV AMG+ K
Sbjct: 144 NMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQGQTVVAMGTHKA 203
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LKQVRRIVEDC N +HPVYH+K LM+KKELEK+ L +ENWDRFLP FK +NV++KK K
Sbjct: 204 LKQVRRIVEDCFHN-VHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQRKKQK 262
Query: 182 SKEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
KK FPP P K D +E+GEYFLS+ +K S + +K+E Q ++
Sbjct: 263 KIAKKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQR 313
>gi|403339159|gb|EJY68829.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
gi|403343284|gb|EJY70967.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
Length = 383
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/258 (57%), Positives = 195/258 (75%), Gaps = 5/258 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL- 59
+VK AL ++ + EL+L+EGSMTV TT++T DPY I+KARDLI+LL+RSVP QA+KIL
Sbjct: 83 LVKKALSKFKIIGELDLIEGSMTVKTTKQTWDPYSIIKARDLIKLLARSVPYQQAVKILE 142
Query: 60 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 119
DD M CDIIKIG LVRNKE+FVKRRQ L+GPN TLKALE+LT CYILVQGNTV++MG F
Sbjct: 143 DDNMFCDIIKIGGLVRNKEKFVKRRQRLIGPNGMTLKALELLTNCYILVQGNTVSSMGYF 202
Query: 120 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 179
+ LK VRRIV D M+N HP+Y+IK LM+K+EL K+P +A ENWDRFLP FKK+NVK+K+
Sbjct: 203 RELKSVRRIVLDTMRN-THPIYNIKELMIKRELAKNPEMAGENWDRFLPHFKKQNVKRKQ 261
Query: 180 VKSKEKKP---YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
K KK YTPFPP Q K D + +GEYFLSE+ K++ ++++K+ + +K E
Sbjct: 262 KKIDTKKKGDNYTPFPPEQQLRKEDYQMMTGEYFLSEQAKKNIEFEKKRGIKEQKKQEKI 321
Query: 237 RKRDAAFIPPEEPSRQNS 254
+++ F+ P+E + S
Sbjct: 322 DQKNKQFVAPDEDQEKES 339
>gi|195996143|ref|XP_002107940.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
gi|190588716|gb|EDV28738.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
Length = 348
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/249 (59%), Positives = 203/249 (81%), Gaps = 2/249 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ LK++ + C+L+++EGSMTVSTTRKT DPY+I+KARDLI+LL+RSVP QA +IL+
Sbjct: 66 LVEEVLKQHNIKCKLDVIEGSMTVSTTRKTWDPYVIIKARDLIKLLARSVPVEQAKRILE 125
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M C+IIKIG+LVRN++RF+KRRQ L+GPN +TLKALE+LTGCY+++QGNTVA +G++K
Sbjct: 126 DGMACEIIKIGSLVRNRQRFIKRRQRLIGPNGATLKALELLTGCYLMIQGNTVACLGTYK 185
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLKQ ++++ D M N +HP+Y+IK +M+K+EL +P +ANE+WDRFLPKFKK N+K+KKV
Sbjct: 186 GLKQAKKVIIDTMNN-VHPIYNIKAMMIKRELANNPDMANESWDRFLPKFKKVNIKKKKV 244
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K ++K+ YTPFPPP KIDK + SGEYFL ++++ K +E+Q KQAE + K KR+
Sbjct: 245 KIEKKE-YTPFPPPQTERKIDKEMASGEYFLKKKERHFMKRKERQVKQAEAKEKRKAKRE 303
Query: 241 AAFIPPEEP 249
F PP EP
Sbjct: 304 KLFTPPSEP 312
>gi|389747153|gb|EIM88332.1| ribosomal RNA assembly protein mis3 [Stereum hirsutum FP-91666 SS1]
Length = 405
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/278 (52%), Positives = 194/278 (69%), Gaps = 30/278 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL +G++C L+L+ GSM+V TTRK DPY+I+KARDLI+LL+R V QA+KILDD
Sbjct: 71 VTRALDPHGIACTLDLIHGSMSVRTTRKAFDPYMILKARDLIKLLARGVAVTQAVKILDD 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K
Sbjct: 131 NVACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKS 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-- 179
LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLP+F++K++ +
Sbjct: 191 LKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPKLATESWDRFLPQFRRKHLSTSEKT 249
Query: 180 ---------------------------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 212
+ KEKK YTPFPP QP K+D LESGEYFL
Sbjct: 250 ARKNERMETKNDARQAAGLEPDKAPSAMAKKEKKVYTPFPPAQQPRKVDLQLESGEYFLK 309
Query: 213 ERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 250
+K+ ++ +E+++KQ E T + + +R FI P E +
Sbjct: 310 PHEKKRREEKERKQKQEETTEKRRAERAEPFIAPVETA 347
>gi|302833165|ref|XP_002948146.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
gi|300266366|gb|EFJ50553.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
Length = 442
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 169/288 (58%), Positives = 203/288 (70%), Gaps = 36/288 (12%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
ALK+ G+ CELNLVEGSMTV TTRKT DP+ I+KARDLI+LL+RSVPAPQA+KIL
Sbjct: 82 ALKDVGIGCELNLVEGSMTVRTTRKTWDPFAIIKARDLIKLLARSVPAPQALKIL----- 136
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
+E+FVKRRQ L+GPN STLKALE+LTGCY+LVQGNTVAAMG +KGLKQ
Sbjct: 137 ------------QEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVAAMGPYKGLKQ 184
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK------ 178
+R++VEDC++N +HP+YHIK LM+K+EL KDPALA ENWDRFLPKFKKKNVK+K
Sbjct: 185 IRKVVEDCIKN-IHPIYHIKTLMIKRELAKDPALATENWDRFLPKFKKKNVKRKKPEEAA 243
Query: 179 -KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 237
K + KK YTPFPPP PSK+D LESGEYFLSE +K + K Q +TAE R
Sbjct: 244 NKAGEEAKKVYTPFPPPMPPSKLDLALESGEYFLSEEQKRERARAAKDAAQEARTAERLR 303
Query: 238 KRDAAFIPPEE--PSRQNSCEA---------EDKTNDVAAMAKSLKEK 274
+R AAFI P+E PS + DV +A+SLK+K
Sbjct: 304 QRQAAFIAPKENGPSTTGRGSGGVQQQQEQSKQGGEDVRVLAESLKKK 351
>gi|403412462|emb|CCL99162.1| predicted protein [Fibroporia radiculosa]
Length = 294
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 148/295 (50%), Positives = 198/295 (67%), Gaps = 29/295 (9%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
M+V TTRKT DPYII+KARD+I+LL+R V A QA+KILDD + CDI+KIGNLVRNKERFV
Sbjct: 1 MSVRTTRKTFDPYIILKARDMIKLLARGVAAGQAVKILDDGVACDIVKIGNLVRNKERFV 60
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 141
KRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +KGLK+VRRI+ DCM+N +HP+Y
Sbjct: 61 KRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKGLKEVRRIILDCMKN-IHPIY 119
Query: 142 HIKILMVKKELEKDPALANENWDRFLPKFKKKNV--------KQKKVKSKE--------- 184
IK LM+K+EL KDP L NE+WDRFLPKF++ ++ K ++K K
Sbjct: 120 RIKELMIKRELAKDPQLVNESWDRFLPKFRRHHLKTSEKTERKNDRLKDKNEARKAAGLE 179
Query: 185 -----------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 233
KK YTPFPPP P K+D LESGEYFL+ +K+ ++ + +++KQ + T
Sbjct: 180 PIGPGSKGQQTKKVYTPFPPPQMPRKVDMQLESGEYFLNSNEKQEREARRRKQKQDQVTE 239
Query: 234 ENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENIN 288
E + KR AF+ P E + E + D + S + K RK+K E+ N
Sbjct: 240 ERQAKRAEAFVAPVEEAAPTVEEKRKRRRDKESDNPSEESAHKTKRKKKRFEDTN 294
>gi|380015443|ref|XP_003691711.1| PREDICTED: KRR1 small subunit processome component homolog [Apis
florea]
Length = 340
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 144/248 (58%), Positives = 190/248 (76%), Gaps = 3/248 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL EY + EL+ +EGSMTV TTRKT DPYII+KARD+I+L+SRSVP QAI++L
Sbjct: 60 LIQKALDEYAIKAELDFIEGSMTVKTTRKTWDPYIIIKARDMIKLMSRSVPFEQAIRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI + VRN+E+FVKRRQ L+GP TLK++E+LT CY+LVQG TVAA+G ++
Sbjct: 120 DDISSDIIKISSFVRNREKFVKRRQRLIGPKGCTLKSIELLTNCYVLVQGQTVAALGPYR 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
L VRRIVED M+N +HP+Y+IK LM+K+EL KDP L NENW+RFLPKF KN+ ++
Sbjct: 180 SLPLVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPKFNSKNINKRKQ 238
Query: 179 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
KEKKPYTPFPPP Q SKIDK++ +GEYFL+E +K +KK +E+ K E + +
Sbjct: 239 PKNKKEKKPYTPFPPPQQESKIDKMISTGEYFLNEEQKRAKKKREQDIKHQEAEKRRQER 298
Query: 239 RDAAFIPP 246
R AF+PP
Sbjct: 299 RAQAFVPP 306
>gi|444730114|gb|ELW70509.1| KRR1 small subunit processome component like protein [Tupaia
chinensis]
Length = 283
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/249 (57%), Positives = 188/249 (75%), Gaps = 4/249 (1%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
MTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERFV
Sbjct: 1 MTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERFV 60
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 141
KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+Y
Sbjct: 61 KRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFNGLKEVRKVVLDTMKN-IHPIY 119
Query: 142 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 199
+IK LM+K+EL KD L +++W+RFLP FK KNV ++K K+ YTPFPPP S+
Sbjct: 120 NIKTLMIKRELAKDSELRSQSWERFLPHFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 179
Query: 200 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 259
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E S EA
Sbjct: 180 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKSVVKPKEAST 239
Query: 260 KTN-DVAAM 267
T DVAA+
Sbjct: 240 DTKIDVAAI 248
>gi|449019223|dbj|BAM82625.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Cyanidioschyzon
merolae strain 10D]
Length = 351
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 202/267 (75%), Gaps = 11/267 (4%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V L++ G++CELNL+EG+MTV TTRKT DP+ + +ARD I+LL+RSVP QA +IL
Sbjct: 76 LVTQHLQKTGIACELNLIEGTMTVRTTRKTYDPFAVFRARDFIKLLARSVPVQQAARILY 135
Query: 61 DE-MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 119
DE + CDIIKI VR+++RF++RR+ L+GPN STLKA+E+LT CY+LVQGNTVAAMG
Sbjct: 136 DEKLYCDIIKISGYVRSRDRFLRRRERLIGPNGSTLKAIELLTNCYVLVQGNTVAAMGDH 195
Query: 120 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 179
KGLKQVRRIVE+CMQN +HP+Y+IK LM+K+EL KDP LA ENW+RFLP+FKK+N K+++
Sbjct: 196 KGLKQVRRIVEECMQN-VHPIYNIKRLMIKRELAKDPELAKENWERFLPQFKKRNQKRRR 254
Query: 180 VKSKE------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 233
K + K Y PFPPP +P KID ++ESGEYFL+E++++ K+ E+ E+++E A
Sbjct: 255 GKHQTDQQEGGSKAYEPFPPPQRPRKIDLMIESGEYFLTEQQRDQKRKTER-ERKSEAVA 313
Query: 234 ENKRKRDAAFIPPEEPSRQNSCEAEDK 260
+RK A + PS + +A +K
Sbjct: 314 LERRKERAKVW--DAPSHEQMAQAREK 338
>gi|388583024|gb|EIM23327.1| ribosomal RNA assembly protein mis3 [Wallemia sebi CBS 633.66]
Length = 382
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/283 (53%), Positives = 197/283 (69%), Gaps = 37/283 (13%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++G++C L++VEGSMTV TTRKT DPYII+KARDLI+LLSRSVP QA+K+L+D
Sbjct: 75 VTRALEKHGINCVLDMVEGSMTVKTTRKTYDPYIILKARDLIKLLSRSVPFSQAVKVLED 134
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E DIIKIG LVRNK+RFVKRRQ ++GPN +TLKA+E+LT CYILVQGNTV+ MG FKG
Sbjct: 135 EYAADIIKIGGLVRNKDRFVKRRQRIIGPNGNTLKAIELLTECYILVQGNTVSVMGPFKG 194
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV------ 175
LK VRRI+ DCM N +HP+YHIK LM+K++L +DP LA E+WDRFLP FKK+N
Sbjct: 195 LKNVRRIILDCMNN-VHPIYHIKELMIKRQLAEDPNLAGESWDRFLPSFKKRNQTTSEKT 253
Query: 176 ------------------------------KQKKVKSKEKKPYTPFPPPPQPSKIDKLLE 205
++ +K+ ++K YTPFPPP QP KID +E
Sbjct: 254 ASKNRKLEHRAEARGMDVDALRQEDAAKERERSHIKADKQKVYTPFPPPQQPKKIDLQIE 313
Query: 206 SGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
SGEYFL +K+SK+ +E++ Q E + + K +R + P+E
Sbjct: 314 SGEYFLKPYEKKSKEREERKHTQEENSKKRKAERAKDLVAPDE 356
>gi|328909187|gb|AEB61261.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 324
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/240 (57%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 82 LVQKALNEHHVNAALDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 141
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 142 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFN 201
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 202 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 260
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+ YTPFPPP S+IDK L S EYFL +K+ +K + + KQ +++ KRK
Sbjct: 261 PKKKTVKKEYTPFPPPQPESQIDKELASCEYFLKASQKKRQKMEAVKAKQQKRSVRGKRK 320
>gi|393246490|gb|EJD53999.1| hypothetical protein AURDEDRAFT_110662 [Auricularia delicata
TFB-10046 SS5]
Length = 390
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 198/289 (68%), Gaps = 31/289 (10%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
AL+ +GV+C L+LV+GSM+V TT KT DPY++ KARD+I+LL+R V QA+++L+D +
Sbjct: 74 ALEGHGVACTLDLVQGSMSVKTTPKTYDPYVLFKARDMIKLLARGVAINQALRVLEDGVA 133
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
CDIIKIG +VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQGNTV+ +G K LK+
Sbjct: 134 CDIIKIGGMVRNKERFVKRRQRIIGPDGSTLKAIELLTECYVLVQGNTVSVLGPHKKLKE 193
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKS 182
VRRIVEDCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLP+F+K+++ QK K
Sbjct: 194 VRRIVEDCMKN-IHPIYRIKELMIKRELAKDPKLATESWDRFLPQFRKRHLSSAQKSAKK 252
Query: 183 KE----------------------------KKPYTPFPPPPQPSKIDKLLESGEYFLSER 214
+E KK YTPFPPP QP K+D LESGEYFL +
Sbjct: 253 RELVAHKEEVQVQAGASTSAGTEGKKEKPKKKVYTPFPPPQQPRKVDLQLESGEYFLKPK 312
Query: 215 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTND 263
++E++ E+++KQ E + +R AF+ PEE + E K D
Sbjct: 313 EREARVAAERRKKQEEAGERRREERAQAFVAPEEAKERTVDEKRKKRKD 361
>gi|392575468|gb|EIW68601.1| hypothetical protein TREMEDRAFT_31674 [Tremella mesenterica DSM
1558]
Length = 395
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 192/284 (67%), Gaps = 38/284 (13%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ LK + CEL+LV+G MTV TTRKT DPY+++K RD+++LL+R V PQ KIL D
Sbjct: 93 ITSKLKTVELDCELDLVQGKMTVKTTRKTWDPYVVLKGRDMLKLLARGVDPPQVYKILQD 152
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+I IG LVRNKERFVKRR ++GPN STLKA+E+LT CY+LVQGNTV+AMGS+KG
Sbjct: 153 DIACDVIPIGGLVRNKERFVKRRARILGPNGSTLKAIELLTECYVLVQGNTVSAMGSYKG 212
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ---- 177
LK+VRRI+ DCM N +HP+Y IK LM+++EL KDP L NENWDRFLPKF+K+++K
Sbjct: 213 LKEVRRIIVDCMNN-IHPIYRIKELMIRRELAKDPKLVNENWDRFLPKFQKRHLKTSEKT 271
Query: 178 ---------------------------------KKVKSKEKKPYTPFPPPPQPSKIDKLL 204
K + +KK YTPFPPP QPSK+D +
Sbjct: 272 ARKNAKLSHPQLNNTNPNAIVIQNDESSQSSQLKTTEKPKKKIYTPFPPPQQPSKLDLQM 331
Query: 205 ESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
SGEYFL +++E+ + + + EKQAEK + K +R+ AFI P E
Sbjct: 332 ASGEYFLKPKEREALEKKRRLEKQAEKAEKKKSEREEAFIAPPE 375
>gi|396463320|ref|XP_003836271.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
gi|312212823|emb|CBX92906.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
Length = 341
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 153/250 (61%), Positives = 192/250 (76%), Gaps = 5/250 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+ AL + G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILD
Sbjct: 58 FITSALAKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILD 117
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ DIIKI NLV NK+RFVKRRQ ++GPN STLKALE+LT Y+LVQGNTVAAMG FK
Sbjct: 118 DDVAMDIIKIRNLVGNKDRFVKRRQRILGPNGSTLKALELLTETYLLVQGNTVAAMGPFK 177
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
GLK VRRI+ED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++
Sbjct: 178 GLKTVRRIIEDTMHN-IHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRV 236
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPPP + SK+D +ESGE+FL + KE K +E++EK +K +
Sbjct: 237 PHKVTDKSKKVYTPFPPPQEKSKVDLQIESGEFFLGKHAKERKAREEREEKMKDKMDAKR 296
Query: 237 RKRDAAFIPP 246
++R A ++ P
Sbjct: 297 KERMAEYVAP 306
>gi|156085547|ref|XP_001610183.1| Ribosomal RNA assembly protein mis3 [Babesia bovis T2Bo]
gi|154797435|gb|EDO06615.1| Ribosomal RNA assembly protein mis3, putative [Babesia bovis]
Length = 342
Score = 279 bits (714), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 147/255 (57%), Positives = 191/255 (74%), Gaps = 2/255 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK AL Y + CEL+LVEGSM+V TT+KT DPYII+KARD+I+L++RSVP QA +IL+D
Sbjct: 63 VKRALGNYHIKCELDLVEGSMSVLTTKKTWDPYIIIKARDMIKLIARSVPFHQAKRILED 122
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDI+KIG ++RNK++F+KRRQ LVGP STLKALE+LT CYIL QG TV+ +GS KG
Sbjct: 123 GVYCDIVKIGGMLRNKDKFIKRRQRLVGPGGSTLKALELLTQCYILTQGQTVSIIGSIKG 182
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+K RRIVEDCM+N +HPVYHIK LM+K+ELEKD L ENWDRFLP+FKK++VK++K +
Sbjct: 183 IKIARRIVEDCMKN-IHPVYHIKELMIKRELEKDEKLKGENWDRFLPQFKKRSVKRRKTQ 241
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 241
K+KK P P K D LLESGEYFL E +++ + K +Q K EN++K+ A
Sbjct: 242 VKKKKSSGLLLPEQTPRKEDLLLESGEYFLLEEERQRRNRMNKLAEQHSKGLENRKKKAA 301
Query: 242 AFIPPEEPSRQNSCE 256
A+ PE+ + S E
Sbjct: 302 AY-DPEQNTTSESVE 315
>gi|323456010|gb|EGB11877.1| hypothetical protein AURANDRAFT_12957, partial [Aureococcus
anophagefferens]
Length = 272
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 141/217 (64%), Positives = 178/217 (82%), Gaps = 2/217 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V L + GV+CELNL+EGSMTV+TTRKT DPY+I+KARDLI+LL+RS+PA QA+KILD
Sbjct: 55 IVTRTLGKVGVACELNLIEGSMTVATTRKTSDPYVILKARDLIKLLARSIPAAQAMKILD 114
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CD+IKIG LVRN++RFV+RRQ LVGP+ +TLKALE+LT CY+LVQGNTVA MG K
Sbjct: 115 DGVHCDVIKIGGLVRNRDRFVRRRQRLVGPDGATLKALELLTECYVLVQGNTVACMGGIK 174
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GLK R++VE+C +N +HP+Y+IKILM+K+EL DP L E+W+RFLPKF KKNV+ KK
Sbjct: 175 GLKTCRKVVEECFRN-VHPIYNIKILMIKRELANDPELKEEDWERFLPKFAKKNVQTKKP 233
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 216
+K++ K YTPFPP QPSK+D +ESGEYF E K
Sbjct: 234 LKTRPTKAYTPFPPAQQPSKVDLQIESGEYFAPESAK 270
>gi|357120775|ref|XP_003562100.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 349
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/250 (63%), Positives = 194/250 (77%), Gaps = 17/250 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+GAL+++GV+CELNLV+ +TVSTTRKTRDPYII+KARDLI LL+R VPAPQAIKILDD
Sbjct: 68 VQGALRDFGVTCELNLVKECITVSTTRKTRDPYIIIKARDLIVLLARGVPAPQAIKILDD 127
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG--SF 119
EM CDIIKI N++RN ERFV+RR+ ++GPN ST KA+EILTGCYILVQG TVAAMG +
Sbjct: 128 EMTCDIIKIRNIIRNNERFVRRRRRILGPNLSTRKAIEILTGCYILVQGGTVAAMGPSNG 187
Query: 120 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 179
+GLKQVRRIVEDCM+N HP+YHIK L++K+E K+ +ANE+WDR
Sbjct: 188 RGLKQVRRIVEDCMKNIKHPMYHIKDLLIKREQAKNATVANESWDR-------------- 233
Query: 180 VKSKEKKPY-TPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K+KKPY P PP PSKID LES EYFLS+ K +K+ QEK KQ+EK NKRK
Sbjct: 234 TNAKQKKPYAAPSLPPQTPSKIDLELESEEYFLSDENKSAKERQEKLGKQSEKVHGNKRK 293
Query: 239 RDAAFIPPEE 248
R+AA +PP+E
Sbjct: 294 REAALVPPKE 303
>gi|62202255|gb|AAH92872.1| LOC553525 protein, partial [Danio rerio]
Length = 260
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 178/229 (77%), Gaps = 3/229 (1%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
MTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERFV
Sbjct: 1 MTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERFV 60
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 141
KRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+Y
Sbjct: 61 KRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVPDTMKN-IHPIY 119
Query: 142 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 199
+IK LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP SK
Sbjct: 120 NIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPESK 179
Query: 200 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
IDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 180 IDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 228
>gi|440462064|gb|ELQ32475.1| hypothetical protein OOU_Y34scaffold01139g1, partial [Magnaporthe
oryzae Y34]
Length = 251
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 126/174 (72%), Positives = 155/174 (89%), Gaps = 1/174 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++G++C L+LVEGSMTV TTRK DPYII+KARD+IRLLSRSVP PQA+KIL+D
Sbjct: 39 VTSALDKHGIACTLDLVEGSMTVKTTRKAYDPYIILKARDMIRLLSRSVPFPQAVKILED 98
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++CD+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LTGCY+LVQGNTV+AMG FK
Sbjct: 99 GIECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGPFKS 158
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 175
LK+VRRIV DC++N +HP+YHIK LM+K+EL KDP LA ENW+RFLPKFKK+N+
Sbjct: 159 LKEVRRIVIDCLKN-VHPIYHIKELMIKRELAKDPKLAEENWERFLPKFKKRNM 211
>gi|66813724|ref|XP_641041.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
gi|74855697|sp|Q54UU6.1|KRR1_DICDI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|60469063|gb|EAL67060.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
Length = 374
Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/253 (56%), Positives = 187/253 (73%), Gaps = 3/253 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+G+ C+L+L+EGSMTV+TT+K DP I+KARDLI+LLSRSVP A K+L+
Sbjct: 78 LVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAILKARDLIKLLSRSVPFEHAQKVLN 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIG VRNKERFVKRRQ LVGP+ STLKA+E+LT CY+LVQGNTV+++G +
Sbjct: 138 DDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIELLTKCYVLVQGNTVSSIGPWN 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL QVR+IVEDC++N +HP+Y+IK LM+K+ELEKD L NENW+R+LP+FKK N +KK
Sbjct: 198 GLVQVRKIVEDCLKN-IHPIYNIKELMIKRELEKDETLKNENWERYLPQFKKTNQNKKKK 256
Query: 181 KSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+K + PF PP P K D +ESGEYF SE KK K +++ K AE + K +
Sbjct: 257 VQKKKKDRDAAPFAPPQLPRKEDLAMESGEYFASEEKKRRKIQADREAKHAESDQKRKDE 316
Query: 239 RDAAFIPPEEPSR 251
R + I P E R
Sbjct: 317 RQKSQIAPAEKDR 329
>gi|209880169|ref|XP_002141524.1| KH domain-containing protein [Cryptosporidium muris RN66]
gi|209557130|gb|EEA07175.1| KH domain-containing protein [Cryptosporidium muris RN66]
Length = 369
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/269 (57%), Positives = 200/269 (74%), Gaps = 10/269 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-- 59
VK ALKEY + CEL+LVEGSMTV TT KT DP+II++ARDLIRLL+RSVP QA++IL
Sbjct: 80 VKNALKEYQIKCELDLVEGSMTVRTTGKTWDPFIIIRARDLIRLLARSVPFHQAVRILGY 139
Query: 60 ---DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 116
D+ + CDIIKIG+ RNKE+F+KRRQ LVGPN STLKA+E+LT CYILVQG TV+ +
Sbjct: 140 GEDDNNLGCDIIKIGH--RNKEKFIKRRQRLVGPNGSTLKAIELLTNCYILVQGQTVSVI 197
Query: 117 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
G +KGLKQV RIVEDCM N +HP+YHIK LM+K+ELEKD L NENWDRF+PKFK K
Sbjct: 198 GPYKGLKQVYRIVEDCMNN-IHPIYHIKELMIKRELEKDEKLRNENWDRFIPKFKNK-CI 255
Query: 177 QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
++K K + KK + FPP P K D L+ESGEYF +E +++S K E+ +Q EK + K
Sbjct: 256 KRKEKKRIKKEKSLFPPEQLPRKEDILIESGEYFANEMERKSIKMNERISRQKEKREQKK 315
Query: 237 RKRDAAFIPPEEPSRQNSCEAEDKTNDVA 265
++R+ FI P++ S++N E ++ V
Sbjct: 316 KEREKLFI-PQDNSKKNLDEYKEDIKSVV 343
>gi|67607248|ref|XP_666799.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657852|gb|EAL36562.1| hypothetical protein Chro.30334, partial [Cryptosporidium hominis]
Length = 343
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/252 (58%), Positives = 192/252 (76%), Gaps = 8/252 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-- 59
++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP QA++IL
Sbjct: 72 IRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVPFHQAVRILGD 131
Query: 60 ---DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 116
D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+LVQG TV+ +
Sbjct: 132 GEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYVLVQGQTVSVI 189
Query: 117 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
GS+K LK VRRIVEDCM N +HPVYHIK LM+K+ELEKD L ENWDRFLPKFK K VK
Sbjct: 190 GSYKSLKLVRRIVEDCMNN-IHPVYHIKELMIKRELEKDERLRGENWDRFLPKFKNKCVK 248
Query: 177 QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+ +Q EK E
Sbjct: 249 RKVKKQMKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKERISEQKEKKNEKH 308
Query: 237 RKRDAAFIPPEE 248
++R+ ++PP E
Sbjct: 309 KEREKIYVPPNE 320
>gi|399217414|emb|CCF74301.1| unnamed protein product [Babesia microti strain RI]
Length = 367
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/233 (60%), Positives = 174/233 (74%), Gaps = 2/233 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK L E+ + C L+LVEGSM+V T++KT DPYII+KARD+I+LL+RSVP QA KIL D
Sbjct: 82 VKKCLGEHNIRCNLDLVEGSMSVYTSKKTWDPYIIIKARDMIKLLARSVPFAQARKILLD 141
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDI+KIG L+RNKE+FVKRRQ LVGP +TLKALEILT CYIL QG TV+ MG FKG
Sbjct: 142 GVYCDIVKIGGLIRNKEKFVKRRQRLVGPGGTTLKALEILTECYILTQGQTVSIMGPFKG 201
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+K RRIVEDCM+N +HPVYHIK LM+K+EL KD L NENWDRFLP+FKK+NV Q+K
Sbjct: 202 VKLARRIVEDCMRN-IHPVYHIKELMIKRELNKDENLKNENWDRFLPQFKKRNV-QRKKF 259
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 234
+KK P P K D +LE+GEYFL E ++ K +EK+ ++ K E
Sbjct: 260 KSKKKNSNSIIPDQTPRKEDIMLETGEYFLKEHVRKEKALKEKKRRKTIKLEE 312
>gi|443689552|gb|ELT91925.1| hypothetical protein CAPTEDRAFT_183647 [Capitella teleta]
Length = 330
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 141/271 (52%), Positives = 199/271 (73%), Gaps = 5/271 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ LK + + +L++VEGSM+V TTR+T DPYII++ARDLI+LLSRSVP +A+++LD
Sbjct: 25 LVQEKLKSFNIKADLDVVEGSMSVKTTRQTWDPYIIIRARDLIKLLSRSVPYDKAVRVLD 84
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ C+II I N+V KER+VKRRQ L+GPN STLKA+E+LT CY+ VQG+TVAA+G +
Sbjct: 85 DDVACEIISIKNMVSPKERYVKRRQRLIGPNGSTLKAIELLTSCYVTVQGSTVAAIGKYS 144
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK VR IV DCM+N +HP+Y+IK M+K ELEKDP L ++W+RFLPKFKK+NV KK
Sbjct: 145 GLKFVRSIVTDCMKN-VHPIYNIKCAMIKNELEKDPELNKDSWERFLPKFKKQNVSNKKK 203
Query: 181 KSKEKKP----YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
K++K YTPFPPP SK+DK L SGE+FL+E++K+ KK E++ + +
Sbjct: 204 AKKKEKSKKKEYTPFPPPMPESKVDKELASGEFFLTEKQKKKKKEDERKTNETSHRKTHA 263
Query: 237 RKRDAAFIPPEEPSRQNSCEAEDKTNDVAAM 267
K + ++IPP+E + +D T D+ ++
Sbjct: 264 EKHEKSYIPPKETDGKKKKVKKDDTIDIDSL 294
>gi|58265972|ref|XP_570142.1| rRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110418|ref|XP_776036.1| 90S preribosome/SSU processome component KRR1 [Cryptococcus
neoformans var. neoformans B-3501A]
gi|50258704|gb|EAL21389.1| hypothetical protein CNBD0850 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226375|gb|AAW42835.1| rRNA processing-related protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 402
Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 123/175 (70%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ AL+ YG++CEL+LV+G MTV TTRKT DPYII K RDL++LL+R V APQAIKIL+D
Sbjct: 82 ITSALEAYGLACELDLVQGKMTVKTTRKTWDPYIIFKGRDLLKLLARGVNAPQAIKILED 141
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQGNTV+ MGS+KG
Sbjct: 142 GIACDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKG 201
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
LK+VRRI+ DCM N +HP+Y IK LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 202 LKEVRRIILDCMNN-IHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
>gi|405119935|gb|AFR94706.1| ribosomal RNA assembly protein mis3 [Cryptococcus neoformans var.
grubii H99]
Length = 406
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 122/175 (69%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ AL+ YG++CEL+LV+G MTV TTRKT DPYI+ K RDL++LL+R V APQAIKIL+D
Sbjct: 82 ITSALEAYGLACELDLVQGKMTVKTTRKTWDPYIVFKGRDLLKLLARGVNAPQAIKILED 141
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQGNTV+ MGS+KG
Sbjct: 142 GIACDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKG 201
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
LK+VRRI+ DCM N +HP+Y IK LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 202 LKEVRRIILDCMNN-IHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 188 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 247
YTPFPPP QPSK+D L SGEYFL ++KE+ ++K EKQ E E + R+ AF+ P
Sbjct: 326 YTPFPPPQQPSKLDLQLASGEYFLKPKEKEAIDKRKKMEKQKEIAQERRAVREEAFVAPP 385
Query: 248 E 248
E
Sbjct: 386 E 386
>gi|323509785|dbj|BAJ77785.1| cgd3_2950 [Cryptosporidium parvum]
Length = 302
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/228 (61%), Positives = 178/228 (78%), Gaps = 8/228 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-- 59
++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP QA++IL
Sbjct: 75 IRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVPFHQAVRILGE 134
Query: 60 ---DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 116
D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+LVQG TV+ +
Sbjct: 135 GEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYVLVQGQTVSVI 192
Query: 117 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
GS+K LK VRRIVEDCM N +HPVYHIK LM+K+ELEKD L ENWDRFLPKFK K VK
Sbjct: 193 GSYKSLKLVRRIVEDCMNN-IHPVYHIKELMIKRELEKDERLRGENWDRFLPKFKNKCVK 251
Query: 177 QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 224
+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+
Sbjct: 252 RKVKKQIKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKER 299
>gi|321262677|ref|XP_003196057.1| rRNA processing-related protein [Cryptococcus gattii WM276]
gi|317462532|gb|ADV24270.1| rRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 404
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 121/175 (69%), Positives = 150/175 (85%), Gaps = 1/175 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+ AL+ YG++CEL+LV+G M V TTRKT DPYI+ K RDL++LL+R V APQAIKIL+D
Sbjct: 82 ITSALEAYGLACELDLVQGKMIVKTTRKTWDPYIVFKGRDLLKLLARGVNAPQAIKILED 141
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQGNTV+ MGS+KG
Sbjct: 142 GIACDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKG 201
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 176
LK+VRRI+ DCM N +HP+Y IK LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 202 LKEVRRIILDCMNN-IHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 188 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 247
YTPFPPP QPSK+D L SGEYFL ++KE+ ++K EKQ E E + R+ AF+ P
Sbjct: 324 YTPFPPPQQPSKLDLQLASGEYFLKPKEKEAIDKRKKMEKQKEVAQERRAVREEAFVAPP 383
Query: 248 E 248
E
Sbjct: 384 E 384
>gi|84994724|ref|XP_952084.1| ribosomal RNA assembly protein [Theileria annulata strain Ankara]
gi|65302245|emb|CAI74352.1| ribosomal RNA assembly protein, putative [Theileria annulata]
Length = 355
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/244 (59%), Positives = 184/244 (75%), Gaps = 7/244 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK L +Y ++CEL+L+EGSMTV TT KT DPYII+KARDLI+LL+RSVP PQA +IL+D
Sbjct: 64 VKRCLSQYHINCELDLLEGSMTVITTNKTWDPYIIIKARDLIKLLARSVPFPQAKRILED 123
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIG L+RNKE+F+KRRQ LVGP STLKALE+LT CYIL QG TV+A+GS KG
Sbjct: 124 GVYCDIIKIGGLIRNKEKFIKRRQRLVGPGGSTLKALELLTECYILTQGQTVSAIGSIKG 183
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAN-----ENWDRFLPKFKKKNVK 176
+K VR+IVEDC+ N +HPVY+IK L++K+EL K+ L N ENWDRFLP FKK+ VK
Sbjct: 184 IKTVRKIVEDCIYN-IHPVYYIKELIIKRELNKNEKLKNVPNPIENWDRFLPHFKKRCVK 242
Query: 177 QKKVKSKEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 235
+KK K +KK P QP K D LLE+GEYF+ E +++ K+ E++EKQ K E
Sbjct: 243 RKKTKVVKKKSENALLIPIQQPRKEDILLETGEYFMREEERKRKQQFERREKQKLKHQEK 302
Query: 236 KRKR 239
K K+
Sbjct: 303 KLKK 306
>gi|403222226|dbj|BAM40358.1| ribosomal RNA assembly protein [Theileria orientalis strain
Shintoku]
Length = 396
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/210 (63%), Positives = 166/210 (79%), Gaps = 1/210 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK L +Y + CEL+L+EGSM V T+ KT DPYII+KARD+I+LL+RSVP PQA K+LDD
Sbjct: 63 VKKCLSQYHIKCELDLLEGSMAVITSSKTWDPYIIIKARDMIKLLARSVPFPQARKVLDD 122
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDI+KIG ++RNK++FVKRRQ LVGP STLKALE+LTGCYIL QG TV+ +G +G
Sbjct: 123 GVFCDIVKIGGILRNKDKFVKRRQRLVGPGGSTLKALELLTGCYILTQGQTVSIVGPIQG 182
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+K RRIVEDCM+N +HPVYHIK LM+K+EL+KD L NENW+RFLP+FKK+ VK+KK K
Sbjct: 183 IKVARRIVEDCMKN-IHPVYHIKELMIKRELQKDEKLKNENWERFLPQFKKRCVKRKKTK 241
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+KK T P P K D LLE+GEYF+
Sbjct: 242 IVKKKSPTLLLPVQTPRKEDILLETGEYFM 271
>gi|145542859|ref|XP_001457116.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424931|emb|CAK89719.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 129/216 (59%), Positives = 173/216 (80%), Gaps = 2/216 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
MVK ++K++G+ ELNL+EGS+TV TT KT DP+ I+KARD+I+LL+RSVP Q +++L+
Sbjct: 67 MVKKSMKDHGIRAELNLMEGSLTVKTTNKTWDPWAIMKARDIIKLLARSVPVQQCLRLLE 126
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D CDIIKI + RNKE+FVKRRQ L+GPN +TLKALE+LT CYI+VQG+TV+ +G++K
Sbjct: 127 DGTFCDIIKIRSYTRNKEKFVKRRQRLIGPNGATLKALELLTDCYIMVQGSTVSVIGNWK 186
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
LK VR++V D MQN +HP+Y IK LM+K+EL KD + NENWDRFLP FKK+N +++K
Sbjct: 187 NLKTVRKVVVDTMQN-VHPIYSIKELMIKRELSKDENMQNENWDRFLPHFKKQN-QKRKK 244
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 216
K+KK YTPFPP QP K D L+ SGEYFL+E+++
Sbjct: 245 VIKKKKEYTPFPPEQQPRKEDLLMASGEYFLNEKQR 280
>gi|402594910|gb|EJW88836.1| dribble protein [Wuchereria bancrofti]
Length = 315
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 139/278 (50%), Positives = 195/278 (70%), Gaps = 31/278 (11%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ +E+ + +L+++EG+M V TTRKT DPYII+KARD+++L+SRSVP QA+++L
Sbjct: 65 LLQKVFEEHFLKADLDVLEGTMVVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAVRVLQ 124
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ +IIKI ++V NKERFVKRR L+G +TLKA+E+LT CYI+VQG+TVAA+G ++
Sbjct: 125 DDTASEIIKISSMVTNKERFVKRRARLIGNEGATLKAVELLTKCYIMVQGSTVAAVGPYE 184
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK VR IVEDCM N +HP+Y+IK LM+K+EL KD L NENWDRFLPKFKK
Sbjct: 185 GLKHVRMIVEDCMNN-IHPIYNIKTLMIKRELMKDENLKNENWDRFLPKFKK-------- 235
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KIDK LESGEYFLSE+ ++ +K EK+ KQ EK AE K++R
Sbjct: 236 ------------------KIDKQLESGEYFLSEKTRQMEKRNEKRTKQMEKIAERKKQRA 277
Query: 241 AAFIPPEEPSR-QNSCEAEDKTNDVAAMAKSLKEKAKK 277
+ ++PP+ R +NS + +TN+V ++LK+K +K
Sbjct: 278 SEYVPPDGKIRPKNSYK---RTNEVPIDIENLKKKVRK 312
>gi|340504633|gb|EGR31059.1| ribosomal RNA assembly, putative [Ichthyophthirius multifiliis]
Length = 359
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 183/247 (74%), Gaps = 2/247 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L +YG+ +LNL EGS+TV TT+KT DPY I+KARD I+LL+RSVP QA+++++D
Sbjct: 71 IKKTLNDYGIKADLNLTEGSITVRTTKKTWDPYAIIKARDCIKLLARSVPFQQALRVMED 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ D++KI NLVRNKE+F+KRRQ L+GPN TLKALE+LT CYI+VQG+TV+ +G +K
Sbjct: 131 GVFSDVVKIRNLVRNKEKFIKRRQRLIGPNGQTLKALELLTECYIMVQGSTVSCIGGWKQ 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK +RRI+ED M N +HP+Y+IK LM+KKEL KD L +ENWDRFLP+FKK N K+K+ K
Sbjct: 191 LKVLRRIIEDTMHN-IHPIYNIKELMIKKELMKDDKLKDENWDRFLPQFKKINAKKKQKK 249
Query: 182 SKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
K +K YTPFPP QP KID +++GEYFL E +K+ ++K KQ K + ++
Sbjct: 250 QKVQKKEYTPFPPEQQPRKIDIEIQTGEYFLKESEKKQNNLKQKIIKQENKIQQKMDQKS 309
Query: 241 AAFIPPE 247
+ PE
Sbjct: 310 KLYEAPE 316
>gi|71031110|ref|XP_765197.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352153|gb|EAN32914.1| hypothetical protein, conserved [Theileria parva]
Length = 349
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/216 (62%), Positives = 171/216 (79%), Gaps = 2/216 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK L +Y ++CEL+L+EGSMTV TT KT DPYII+KARDLI+LL+RSVP PQA +ILDD
Sbjct: 64 VKNCLSQYHINCELDLLEGSMTVITTDKTWDPYIIIKARDLIKLLARSVPFPQAKRILDD 123
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ CDIIKIG L+RNK++F+KRRQ LVGP STLKALE+LT CYIL QG TV+ +GS KG
Sbjct: 124 GVYCDIIKIGGLIRNKDKFIKRRQRLVGPGGSTLKALELLTECYILTQGQTVSVIGSIKG 183
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+K VR+IVEDC+ N +HPVY+IK L++K+EL K+ L NENWDRFLP+FKK+ VK++KVK
Sbjct: 184 IKTVRKIVEDCIYN-IHPVYYIKELIIKRELSKNEKLKNENWDRFLPQFKKRCVKRRKVK 242
Query: 182 SKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKK 216
KK + P QP K D LLE+GEYF+ E ++
Sbjct: 243 VVRKKKENSLLIPEQQPRKEDILLETGEYFMREEER 278
>gi|255729762|ref|XP_002549806.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
gi|240132875|gb|EER32432.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
Length = 233
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 121/172 (70%), Positives = 149/172 (86%), Gaps = 1/172 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL+++ + CELNLVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTKALEKHFIKCELNLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CD+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DVACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK 173
LK+VRR+VEDCM+N +HP+Y+IK LM+K+EL K+P LANE+W RFLP FKK+
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYYIKELMIKQELSKNPDLANEDWSRFLPSFKKR 230
>gi|68069899|ref|XP_676861.1| RNA-binding protein [Plasmodium berghei strain ANKA]
gi|56496746|emb|CAH98323.1| RNA-binding protein, putative [Plasmodium berghei]
Length = 291
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 125/215 (58%), Positives = 162/215 (75%), Gaps = 5/215 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L + + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A ++LDD
Sbjct: 68 IKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAKRVLDD 127
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDIIKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V G TV +G+FK
Sbjct: 128 EIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVCVIGNFKS 187
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VRRIV DCM+N +HPVYHIK L+ K+ELEK+ L NENW+++LP FKK+NV++KK+K
Sbjct: 188 LKIVRRIVIDCMKN-IHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQRKKIK 246
Query: 182 ----SKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 212
+K K + FPP P KID +E+GEYF++
Sbjct: 247 QKLENKNGKKKSVFPPDQLPRKIDIQMETGEYFMN 281
>gi|2208950|emb|CAB09659.1| dribble [Drosophila melanogaster]
Length = 327
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/210 (59%), Positives = 166/210 (79%), Gaps = 3/210 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+ + EL+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L
Sbjct: 60 LVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +K
Sbjct: 120 DDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYK 179
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 180 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQ 238
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGE 208
+K+ YTPFPP SK+DK L SG+
Sbjct: 239 PKVKKQKKEYTPFPPSQPESKVDKQLASGD 268
>gi|68531923|ref|XP_723647.1| RNA-binding protein [Plasmodium yoelii yoelii 17XNL]
gi|23478009|gb|EAA15212.1| RNA-binding protein [Plasmodium yoelii yoelii]
Length = 301
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/214 (57%), Positives = 161/214 (75%), Gaps = 5/214 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L + + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A ++L+D
Sbjct: 69 IKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAKRVLND 128
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDIIKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V G TV +G+FK
Sbjct: 129 EIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVCVIGNFKS 188
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VRRIV DCM+N +HPVYHIK L+ K+ELEK+ L NENW+++LP FKK+NV++KK+K
Sbjct: 189 LKIVRRIVIDCMKN-IHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQRKKIK 247
Query: 182 ----SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+K K + FPP P KID +E+GEYF+
Sbjct: 248 QKLENKNGKKKSVFPPDQLPRKIDIQMETGEYFI 281
>gi|268558824|ref|XP_002637403.1| Hypothetical protein CBG19110 [Caenorhabditis briggsae]
gi|268558832|ref|XP_002637407.1| Hypothetical protein CBG19114 [Caenorhabditis briggsae]
Length = 371
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/273 (49%), Positives = 193/273 (70%), Gaps = 12/273 (4%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+ + +L+L+EG+M V TTRKT DPYII+KAR++++LLSRSVP QAI++L+
Sbjct: 83 LIEKALGEHHLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVLKLLSRSVPYEQAIRVLE 142
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ C+IIKI ++VRNKERFVKRR L+G + +TLKALE+LT CY+ VQG TV A+G
Sbjct: 143 DEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLS 202
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLKQ+ +IV DCM+N +HP+Y+IK +M+K+EL K+ L + NWD +LPK++KK
Sbjct: 203 GLKQINQIVTDCMKN-IHPIYNIKSMMIKRELAKNDELKDTNWDPYLPKYRKKVQSASTT 261
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K K K K YTPFPP P SKIDK +ESGEYF+ E +++ K + K E A K
Sbjct: 262 KEAKKKKAYKMKPKGEYTPFPPAPVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVK 321
Query: 232 TAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDV 264
T E ++++ + EE R+ + + + NDV
Sbjct: 322 TVEKQKQKLKVYQAKEEAPREK--QTKKRANDV 352
>gi|118348580|ref|XP_001007765.1| Protein kinase domain containing protein [Tetrahymena thermophila]
gi|89289532|gb|EAR87520.1| Protein kinase domain containing protein [Tetrahymena thermophila
SB210]
Length = 1028
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/226 (57%), Positives = 174/226 (76%), Gaps = 2/226 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
VK L EYG+ ELNL EGS+TV TT+KT DPY I+KARD I+LL+RSVP QA+++++D
Sbjct: 741 VKKVLSEYGIKAELNLTEGSITVRTTKKTWDPYAIIKARDCIKLLARSVPFQQALRVMED 800
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ D++KI +LV+NKE+F+KRRQ L+GPN TLKALE+LT CYI+VQG+TV+ +G ++
Sbjct: 801 GVFSDVVKIRSLVKNKEKFIKRRQRLIGPNGQTLKALELLTNCYIMVQGSTVSCIGDWRQ 860
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVKQKKV 180
LK +RRIVED M N +HP+Y+IK LM+K+EL KD L NENWDRFLP+F K K+ K
Sbjct: 861 LKILRRIVEDTMFN-IHPIYNIKELMIKRELAKDEKLKNENWDRFLPQFKKMNVKKKAKK 919
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 226
+ EKK YTPFPP QP K D +E+GEYF++E++K++K + K +
Sbjct: 920 QKVEKKEYTPFPPEQQPRKEDIAMETGEYFMTEKEKKTKDLRNKMQ 965
>gi|308470857|ref|XP_003097661.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
gi|308239962|gb|EFO83914.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
Length = 368
Score = 256 bits (655), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 187/261 (71%), Gaps = 10/261 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+ + +L+L+EG+M V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+
Sbjct: 81 LIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLE 140
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ C+IIKI ++VRNKERFVKRR L+G + +TLKALE+LT CY+ VQG TV A+G
Sbjct: 141 DEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLS 200
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLKQ+ +IV DCM+N +HP+Y+IK +M+K+EL K+ L + NWD++LP ++KK
Sbjct: 201 GLKQINQIVSDCMKN-IHPIYNIKTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTT 259
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K K K K YTPFPP P SKIDK +ESGEYF+ E +++ K + K E A K
Sbjct: 260 KEAKKKKAYKMKPKGEYTPFPPAPVMSKIDKQIESGEYFIRENERKLNKKRAKLEASAVK 319
Query: 232 TAENKRKRDAAFIPPEEPSRQ 252
T E ++++ + EE R+
Sbjct: 320 TVEKQKQKLKVYQAKEEAPRE 340
>gi|308450342|ref|XP_003088263.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
gi|308248562|gb|EFO92514.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
Length = 368
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 187/261 (71%), Gaps = 10/261 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+ + +L+L+EG+M V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+
Sbjct: 81 LIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLE 140
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ C+IIKI ++VRNKERFVKRR L+G + +TLKALE+LT CY+ VQG TV A+G
Sbjct: 141 DEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLS 200
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLKQ+ +IV DCM+N +HP+Y+IK +M+K+EL K+ L + NWD++LP ++KK
Sbjct: 201 GLKQINQIVSDCMKN-IHPIYNIKTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTT 259
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K K K K YTPFPP P SKIDK +ESGEYF+ E +++ K + K E A K
Sbjct: 260 KEAKKKKAYKMKPKGEYTPFPPAPVMSKIDKQIESGEYFIRENERKLNKKRAKLEASAVK 319
Query: 232 TAENKRKRDAAFIPPEEPSRQ 252
T E ++++ + EE R+
Sbjct: 320 TVEKQKQKLKVYQAKEEAPRE 340
>gi|341902510|gb|EGT58445.1| hypothetical protein CAEBREN_10565 [Caenorhabditis brenneri]
Length = 368
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 134/261 (51%), Positives = 188/261 (72%), Gaps = 10/261 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+ + +L+L+EG+M V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+
Sbjct: 81 LIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLE 140
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ C+IIKI ++VRNKERFVKRR L+G + +TLKALE+LT CY+ VQG TV A+G
Sbjct: 141 DEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLA 200
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLKQ+ +IV DCM+N +HP+Y+IK +M+K+EL K+ L + NWD +LPK++KK
Sbjct: 201 GLKQINQIVTDCMKN-IHPIYNIKTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTT 259
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K K K KK YTP+PP P SKIDK +ESGEYF+ E +++ K + K E A K
Sbjct: 260 KEAKKKKAYKMKPKKEYTPYPPAPVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVK 319
Query: 232 TAENKRKRDAAFIPPEEPSRQ 252
T E ++++ + EE R+
Sbjct: 320 TVEKQKQKLKVYQAKEEAPRE 340
>gi|341883487|gb|EGT39422.1| hypothetical protein CAEBREN_11963 [Caenorhabditis brenneri]
Length = 368
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 134/261 (51%), Positives = 188/261 (72%), Gaps = 10/261 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+ + +L+L+EG+M V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+
Sbjct: 81 LIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLE 140
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ C+IIKI ++VRNKERFVKRR L+G + +TLKALE+LT CY+ VQG TV A+G
Sbjct: 141 DEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLA 200
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLKQ+ +IV DCM+N +HP+Y+IK +M+K+EL K+ L + NWD +LPK++KK
Sbjct: 201 GLKQINQIVTDCMKN-IHPIYNIKTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTT 259
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K K K KK YTP+PP P SKIDK +ESGEYF+ E +++ K + K E A K
Sbjct: 260 KEAKKKKAYKMKPKKEYTPYPPAPVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVK 319
Query: 232 TAENKRKRDAAFIPPEEPSRQ 252
T E ++++ + EE R+
Sbjct: 320 TVEKQKQKLKVYQAKEEAPRE 340
>gi|17557644|ref|NP_504837.1| Protein C05C8.2 [Caenorhabditis elegans]
gi|351021075|emb|CCD63088.1| Protein C05C8.2 [Caenorhabditis elegans]
Length = 370
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 187/261 (71%), Gaps = 10/261 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+ + +L+L+EG+M V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+
Sbjct: 83 LIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLE 142
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ C+IIKI ++VRNKERFVKRR L+G + +TLKALE+LT CY+ VQG TV A+G
Sbjct: 143 DEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLA 202
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------- 173
GLKQ+ +IV DCM+N +HP+Y+IK +M+K+EL K+ L + NWD +LP ++KK
Sbjct: 203 GLKQINQIVTDCMKN-IHPIYNIKTMMIKRELSKNDELKDANWDAYLPNYRKKVQSATTT 261
Query: 174 --NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 231
K+K K K KK +TPFPP P SKIDK +ESGEYF+ E +++ K + K E A K
Sbjct: 262 KEAKKKKAYKMKPKKEFTPFPPAPVMSKIDKQIESGEYFIRENERKMNKKRAKLEASAVK 321
Query: 232 TAENKRKRDAAFIPPEEPSRQ 252
T E ++++ + EE R+
Sbjct: 322 TVEKQKQKLKVYQAKEEAPRE 342
>gi|355698774|gb|AES00908.1| KRR1, small subunit processome component,-like protein [Mustela
putorius furo]
Length = 274
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 161/199 (80%), Gaps = 4/199 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 75 LVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 134
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+ +G F
Sbjct: 135 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFS 194
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K
Sbjct: 195 GLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKE 253
Query: 181 KSKEKKP--YTPFPPPPQP 197
K+ YTPF PPPQP
Sbjct: 254 PKKKTVKKEYTPF-PPPQP 271
>gi|385305422|gb|EIF49399.1| ribosomal rna assembly protein mis3 [Dekkera bruxellensis AWRI1499]
Length = 217
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 124/209 (59%), Positives = 159/209 (76%), Gaps = 11/209 (5%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
MTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KI+ D++ C+++KI LV NKERF+
Sbjct: 1 MTVKTTRKTYDPVQILNARDLIKLLARSVPFPQAVKIMQDDVACEVVKIDGLVSNKERFI 60
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 141
KRRQ L+GP+ +TLKALE+LT CY+LVQG+TV+ MG +GLK +RR++ DCM+N +HP+Y
Sbjct: 61 KRRQRLIGPSGNTLKALELLTDCYMLVQGSTVSIMGPHQGLKVLRRVIIDCMKN-VHPIY 119
Query: 142 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ----------KKVKSKEKKPYTPF 191
HIK LM+K+EL K P LANE+W RFLP+FKK+ V + K KS EKK YTPF
Sbjct: 120 HIKELMIKRELAKRPDLANEDWSRFLPQFKKRAVARRIPKQVKDAKKNGKSTEKKVYTPF 179
Query: 192 PPPPQPSKIDKLLESGEYFLSERKKESKK 220
PP P KID +ESGEYFL+ +K+ KK
Sbjct: 180 PPAQTPRKIDLZIESGEYFLNNNQKKLKK 208
>gi|339234355|ref|XP_003382294.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978714|gb|EFV61660.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 276
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 124/212 (58%), Positives = 160/212 (75%), Gaps = 8/212 (3%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+G+ E++ + GSMTV TTRKT DPY+I+KARDLI+LL+RSVP QA++IL+
Sbjct: 52 LLQKALSEHGIKAEMDALRGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIEQAVRILE 111
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKI LVRN+ RFVKRRQ L+GPN TLKA+E+LT CY+++QGNTV+A+G +
Sbjct: 112 DDTACDIIKISGLVRNRVRFVKRRQRLIGPNGCTLKAIELLTNCYVMIQGNTVSAVGPYS 171
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+ VR+IVEDCM N +HP LM+KKEL KDP LA ENWDRFLPKF+KK QKK
Sbjct: 172 GLRDVRKIVEDCMNN-IHPT-----LMLKKELMKDPKLATENWDRFLPKFRKKLTSQKKK 225
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 212
SK + P K+D+ LE+GEYFL+
Sbjct: 226 SSKRVE--HPKQTVNAQCKLDQQLETGEYFLN 255
>gi|115530772|emb|CAL49409.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Xenopus (Silurana) tropicalis]
Length = 249
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/175 (65%), Positives = 150/175 (85%), Gaps = 1/175 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL
Sbjct: 74 LVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQ 133
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 134 DDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFS 193
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 175
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV
Sbjct: 194 GLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNV 247
>gi|27371283|gb|AAH41273.1| HRB2 protein, partial [Xenopus laevis]
Length = 257
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/175 (65%), Positives = 150/175 (85%), Gaps = 1/175 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL + V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL
Sbjct: 73 LVQKALNDSFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQ 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 133 DDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFG 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 175
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV
Sbjct: 193 GLKEVRKVVSDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNV 246
>gi|281202375|gb|EFA76580.1| hypothetical protein PPL_10349 [Polysphondylium pallidum PN500]
Length = 368
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 205/289 (70%), Gaps = 13/289 (4%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+G+ C+L+L++GSM+V+TT+K DP I+KARDLIRLLSRSVP A +I+
Sbjct: 77 LVEKELNEHGIVCKLDLIDGSMSVTTTKKCWDPVAILKARDLIRLLSRSVPFHHAKRIML 136
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE CDIIKIG VRNKERFVKRRQ L+GP+ +TLK++E+LT CY+LVQG TVA++G +
Sbjct: 137 DENNCDIIKIGGSVRNKERFVKRRQRLIGPDGATLKSIELLTRCYVLVQGTTVASIGPWD 196
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 179
GL QV +IVEDCM+N +HP+Y+IK +M+++EL KD +L E+WDRF+PKFKK NV+ +
Sbjct: 197 GLLQVNKIVEDCMKN-IHPIYNIKEMMIRRELMKDESLKTESWDRFIPKFKKNNVQSSRD 255
Query: 180 ---------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 230
++KK PF P P K D + SGEYFLSE KK KK +E++EKQAE
Sbjct: 256 IAKIKQKKKQIKQKKKDTGPFAPAQLPRKEDLEMASGEYFLSEAKKAEKKKKEREEKQAE 315
Query: 231 KTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 279
A+ +++R ++ + P E R + + ++ N++ + +SLK+ + L+
Sbjct: 316 AVAKKQQERASSLVAPAEKERPHY--SNNQQNNLPSKEESLKKIQENLK 362
>gi|340378663|ref|XP_003387847.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Amphimedon
queenslandica]
Length = 269
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/168 (67%), Positives = 146/168 (86%), Gaps = 1/168 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L ++G+ +L+L+EGSMTVSTTRKT DPYIIVKARD+I+LL+RSVP QAIKILD
Sbjct: 70 LVQKCLNDHGIKSQLDLIEGSMTVSTTRKTFDPYIIVKARDMIKLLARSVPYEQAIKILD 129
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKI +LVRNK+RFV+RRQ L+GP+ +TLKA+E+LT CYI+VQG TV+A+G F
Sbjct: 130 DDKACDIIKIRSLVRNKDRFVRRRQRLIGPDGATLKAIELLTQCYIMVQGATVSAIGPFT 189
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 168
GLKQ+RR+VED M+N +HPVYHIK +M+K+EL KDP+L NE+WDRFLP
Sbjct: 190 GLKQLRRVVEDTMKN-IHPVYHIKTMMIKRELMKDPSLKNESWDRFLP 236
>gi|330801607|ref|XP_003288817.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
gi|325081153|gb|EGC34680.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
Length = 349
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 144/255 (56%), Positives = 187/255 (73%), Gaps = 7/255 (2%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ LK++G+ C+L+L+EGSMT +TT K DP I+KARDLI+LLSRSVP A KI+
Sbjct: 73 LVENLLKDHGIECKLDLIEGSMTTTTTSKCWDPVAILKARDLIKLLSRSVPFEHAQKIML 132
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ C++IKIG VRNKERFVKRRQ LVGP+ STLKA+E+LT CY+LVQGNTV+ +G ++
Sbjct: 133 DDYNCEVIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIELLTKCYVLVQGNTVSCIGPWQ 192
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL QVR+IVEDCM+N +HP+Y+IK LM+K+ELEKD +L E+WD+FLP+FKKKN +KK
Sbjct: 193 GLLQVRKIVEDCMKN-IHPIYNIKELMIKRELEKDESLKAESWDKFLPQFKKKNQNKKKK 251
Query: 181 KSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
K+K + PF P K D + SGEYFLSE KK K +E++ K E +ENKR+
Sbjct: 252 VQKKKKDRDAAPFAQDQLPRKEDIAMASGEYFLSEEKKRKLKEKEREAKHVE--SENKRQ 309
Query: 239 --RDAAFIPPEEPSR 251
R I PEE R
Sbjct: 310 EERMKLSIAPEEKQR 324
>gi|326429404|gb|EGD74974.1| hypothetical protein PTSG_07198 [Salpingoeca sp. ATCC 50818]
Length = 318
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 171/216 (79%), Gaps = 4/216 (1%)
Query: 6 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 65
LK++ + EL+LVEGSMTV TTRKT DPYII+KARD+I+LL+RSVP A ++L DE+ C
Sbjct: 93 LKKHHIVAELDLVEGSMTVRTTRKTWDPYIIIKARDVIKLLARSVPFQHAKRVLQDEIAC 152
Query: 66 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
++IKI N+VRNKERFVKRRQ L+GPN +TLKA+E+LT CY+LVQGNTV+ +G +KGLKQV
Sbjct: 153 EVIKIANIVRNKERFVKRRQRLIGPNGATLKAIELLTDCYMLVQGNTVSCIGPYKGLKQV 212
Query: 126 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-E 184
R++V DCM N +HPVY+IK LM+K+EL K L E+WDRFLPKFKK N K+KK ++
Sbjct: 213 RKVVLDCMNN-IHPVYNIKTLMIKRELMKREDLKGESWDRFLPKFKKTNQKKKKSNTQIV 271
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYFL--SERKKES 218
KK + PP P K+DK +ESGEYFL S ++K+S
Sbjct: 272 KKEPSHLPPEQLPRKVDKEIESGEYFLKPSGKRKQS 307
>gi|313246422|emb|CBY35332.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/270 (54%), Positives = 185/270 (68%), Gaps = 2/270 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L Y + CEL+L+EGSMTV TT+KT DPY I+ ARDLI+LL+RSVP A+K D
Sbjct: 55 LVEKFLTPYFLKCELDLIEGSMTVKTTKKTWDPYSIINARDLIKLLARSVPYEHAVKCFD 114
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE +++KI LVRN ERF KRRQ L+GP TLK +E LTGCYI VQG TVA +G +
Sbjct: 115 DENAVEVVKIKGLVRNLERFAKRRQRLIGPEGQTLKCVEYLTGCYINVQGGTVAIIGPHR 174
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+ R+IV D M NK HP ++I+ LM+K+E K+PAL NENW RFLPK+K K VK++K
Sbjct: 175 GLKECRKIVVDTMNNK-HPAHNIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKK 233
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KEKK YTPFPP P SKIDK LESGEYF+ +++ KK Q K EKQ E +KR
Sbjct: 234 DIKEKKEYTPFPPAPVSSKIDKELESGEYFIKANEQKKKKKQLKAEKQEAANEERSKKRA 293
Query: 241 AAF-IPPEEPSRQNSCEAEDKTNDVAAMAK 269
A+F P E+ ++N E + MAK
Sbjct: 294 ASFQAPKEKQVKKNDSEVREAPKKKKKMAK 323
>gi|313229458|emb|CBY18272.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/270 (54%), Positives = 186/270 (68%), Gaps = 2/270 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L Y + CEL+L+EGSMTV TT+KT DPY I+ ARDLI+LL+RSVP A+K D
Sbjct: 55 LVEKFLTPYFLKCELDLIEGSMTVKTTKKTWDPYSIINARDLIKLLARSVPYEHAVKCFD 114
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE +++KI LVRN ERF KRRQ L+GP TLK +E LTGCYI VQG TVA +G +
Sbjct: 115 DENAVEVVKIKGLVRNLERFAKRRQRLIGPEGQTLKCVEYLTGCYINVQGGTVAIIGPHR 174
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+ R+IV D M NK HP ++I+ LM+K+E K+PAL NENW RFLPK+K K VK++K
Sbjct: 175 GLKECRKIVVDTMNNK-HPAHNIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKK 233
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 240
KEKK YTPFPP P SKIDK LESGEYF+ ++++ KK Q K EKQ E +KR
Sbjct: 234 DIKEKKEYTPFPPAPVSSKIDKELESGEYFIKAKEQKKKKKQLKAEKQEAANEERSKKRA 293
Query: 241 AAF-IPPEEPSRQNSCEAEDKTNDVAAMAK 269
A+F P E+ ++N E + MAK
Sbjct: 294 ASFQAPKEKQVKKNDSEVREAPKKKKKMAK 323
>gi|323305860|gb|EGA59597.1| Krr1p [Saccharomyces cerevisiae FostersB]
Length = 196
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/189 (66%), Positives = 151/189 (79%), Gaps = 4/189 (2%)
Query: 63 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 122
M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGL
Sbjct: 1 MACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGL 60
Query: 123 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKK 179
K+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK
Sbjct: 61 KEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKK 119
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 239
+++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 120 IRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEER 179
Query: 240 DAAFIPPEE 248
FI PEE
Sbjct: 180 AKDFIAPEE 188
>gi|221053157|ref|XP_002257953.1| RNA-binding protein [Plasmodium knowlesi strain H]
gi|193807785|emb|CAQ38490.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
Length = 298
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 156/217 (71%), Gaps = 8/217 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L + + E+NL+EG M V TT+KT DPYII+KARD+I LLSRSVP A ++LDD
Sbjct: 71 IKNVLNNHFIKFEINLIEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFSHAKRVLDD 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E CDIIKI VRN+ +F+KRRQ L+G N +TLKALEILT CYI V G TV+ +G FK
Sbjct: 131 ETFCDIIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEILTNCYICVHGKTVSVIGYFKA 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ---- 177
LK VRRI+ DCM+N +HPVYHIK L+ K+EL+K+ NENW++FLP FKK+NV++
Sbjct: 191 LKVVRRIIVDCMKN-IHPVYHIKELIAKRELQKNEEFKNENWEKFLPNFKKRNVQRKKIK 249
Query: 178 ---KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+K K +K+ + FPP P KID +E+GEYF+
Sbjct: 250 QKLEKKKGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 286
>gi|1326184|gb|AAB00557.1| Rev interacting protein Rip-1 [Homo sapiens]
Length = 288
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 150/178 (84%), Gaps = 1/178 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 178
GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
>gi|124801035|ref|XP_001349592.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|3845166|gb|AAC71863.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 300
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 158/214 (73%), Gaps = 5/214 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L ++ + E++L+EG M V TT+KT DPYII+K+RD+I LLSRSVP A ++L+D
Sbjct: 68 IKNVLNKHFIKFEIDLIEGYMCVKTTKKTFDPYIIIKSRDMISLLSRSVPFVHAKRVLED 127
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E CDIIKI VRNK +F+KRRQ L+G N++TLKALEILT CYI + G TV+ +G FK
Sbjct: 128 ETYCDIIKISGYVRNKNKFIKRRQRLLGSNATTLKALEILTNCYICIHGKTVSVIGHFKS 187
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK VRRI+ DCM+N +HPVYHIK L+ K+ELEK+ NENW++FLP FKK+NV++KK+K
Sbjct: 188 LKVVRRIIIDCMKN-IHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNVQRKKIK 246
Query: 182 SKEKKPY----TPFPPPPQPSKIDKLLESGEYFL 211
K K + FPP P KID +E+GEYFL
Sbjct: 247 EKLDKKKKKNKSVFPPDQLPRKIDIQMETGEYFL 280
>gi|429327834|gb|AFZ79594.1| hypothetical protein BEWA_024430 [Babesia equi]
Length = 243
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/207 (61%), Positives = 162/207 (78%), Gaps = 1/207 (0%)
Query: 39 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 98
ARDLI+LL+RSVP QA K+LDD + CDI+KIG ++RNK++F+KRRQ L+GP STLKAL
Sbjct: 3 ARDLIKLLARSVPFQQAKKVLDDGIFCDIVKIGGMLRNKDKFIKRRQRLIGPGGSTLKAL 62
Query: 99 EILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPAL 158
E+LT CYIL QG TV+ +GS KG+K RRIVEDCM+N +HPVYHIK LM+K+ELEKDPAL
Sbjct: 63 ELLTECYILTQGQTVSIIGSIKGIKVARRIVEDCMKN-VHPVYHIKELMIKRELEKDPAL 121
Query: 159 ANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKES 218
NENWDRFLP+FKK++VK KK K +KKP + P P K D LLESGEYF+ E +++
Sbjct: 122 KNENWDRFLPQFKKRSVKHKKAKIVKKKPSSLLIPTQTPRKEDLLLESGEYFMLEEERKR 181
Query: 219 KKWQEKQEKQAEKTAENKRKRDAAFIP 245
KK E++E Q +K+ E K++R+ F P
Sbjct: 182 KKEIERREGQKKKSLEKKKRREEEFDP 208
>gi|328870400|gb|EGG18774.1| hypothetical protein DFA_02513 [Dictyostelium fasciculatum]
Length = 389
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 164/217 (75%), Gaps = 11/217 (5%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+G+ C+L+ +EG+MTV TT+K DP I+KARDLI+LLSRSVP A KI++
Sbjct: 82 LVEKELVEHGIDCKLDFIEGTMTVVTTKKCWDPVAILKARDLIKLLSRSVPFVHAKKIME 141
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIG LVRNKERFVKRRQ L+GP+ +TLK++E+LT CY+L+QG TVA++G +
Sbjct: 142 DDNNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLKSIELLTRCYVLIQGTTVASIGPWD 201
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL++VR+IVEDCM+N +HP+Y+IK LM+++EL K+ AL +E+W RF+PKFKK+NV+ K
Sbjct: 202 GLEKVRKIVEDCMKN-IHPIYNIKELMIRRELFKNDALKSEDWSRFIPKFKKRNVQSKAP 260
Query: 181 KSKEK------KPYTPFPPPPQPSKIDKLLESGEYFL 211
K+K T F P K D +ESGEYF+
Sbjct: 261 APKKKKNRDAPSASTIF----TPRKEDLEMESGEYFM 293
>gi|70949626|ref|XP_744206.1| RNA-binding protein [Plasmodium chabaudi chabaudi]
gi|56524063|emb|CAH77733.1| RNA-binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 297
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 159/214 (74%), Gaps = 6/214 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L + + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A ++L+D
Sbjct: 69 IKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPFSHAKRVLED 128
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E CDI KI +RNK +F+KRRQ L+G N++TLKALEILT CYI V G TV+ +G+FK
Sbjct: 129 ETFCDI-KISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVSVIGNFKS 187
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ---- 177
LK VRRIV DCM+N +HPVYHIK L+ K+ELEK+ L NENW+++LP FKK+NV++
Sbjct: 188 LKIVRRIVIDCMKN-IHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQRKKIK 246
Query: 178 KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+K++ K K + FPP P KID +E+GEYF+
Sbjct: 247 QKLEKKNGKKKSIFPPDQLPRKIDIQMETGEYFM 280
>gi|29841357|gb|AAP06389.1| similar to GenBank Accession Number BC016778 HIV-1 rev binding
protein 2 in Homo sapiens [Schistosoma japonicum]
Length = 343
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 176/261 (67%), Gaps = 5/261 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K + E+ + E+NL E +M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDD
Sbjct: 85 LKRIMMEHHIRVEINLAESTMEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDD 144
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E DII+I + N+ERFVKRR L+G + TLKALE+ T CYI+VQG TV+ +G +
Sbjct: 145 ETFADIIEIN--MTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYND 202
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKK 179
LK+VR+IV+ C+ +HP Y IK L++ K+L DP N +WDRFLPK KKK + ++K
Sbjct: 203 LKEVRKIVQGCIYENVHPAYSIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKP 262
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRK 238
+K ++KK Y PFPP P PSKID LE G YFL+E +++ K + K + + E K K
Sbjct: 263 LKVRKKKEYNPFPPAPVPSKIDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAK 322
Query: 239 RDAAFIPPEEPSRQNSCEAED 259
R AA +PPE+ S+ E+
Sbjct: 323 RTAALVPPEKRSKIKKMHFEE 343
>gi|189503038|gb|ACE06900.1| unknown [Schistosoma japonicum]
Length = 343
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 176/261 (67%), Gaps = 5/261 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K + E+ + E+NL E +M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDD
Sbjct: 85 LKRIMMEHHIRVEINLAESTMEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDD 144
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E DII+I + N+ERFVKRR L+G + TLKALE+ T CYI+VQG TV+ +G +
Sbjct: 145 ETFADIIEIN--MTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYND 202
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKK 179
LK+VR+IV+ C+ +HP Y IK L++ K+L DP N +WDRFLPK KKK + ++K
Sbjct: 203 LKEVRKIVQGCIYENVHPAYSIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKP 262
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRK 238
+K ++KK Y PFPP P PSKID LE G YFL+E +++ K + K + + E K K
Sbjct: 263 LKVRKKKEYNPFPPAPVPSKIDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAK 322
Query: 239 RDAAFIPPEEPSRQNSCEAED 259
R AA +PPE+ S+ E+
Sbjct: 323 RTAALVPPEKRSKIKKMHFEE 343
>gi|226466630|emb|CAX69450.1| KRR1, small subunit (SSU) processome component, homolog
[Schistosoma japonicum]
Length = 343
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 176/261 (67%), Gaps = 5/261 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K + E+ + E+NL E +M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDD
Sbjct: 85 LKRIMMEHHIRVEINLAESTMEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDD 144
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E DII+I + N+ERFVKRR L+G + TLKALE+ T CYI+VQG TV+ +G +
Sbjct: 145 ETFADIIEIN--MTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYND 202
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKK 179
LK+VR+IV+ C+ +HP Y IK L++ K+L DP N +WDRFLPK KKK + ++K
Sbjct: 203 LKEVRKIVQGCIYENVHPAYSIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKP 262
Query: 180 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRK 238
+K ++KK Y PFPP P PSKID LE G YFL+E +++ K + K + + E K K
Sbjct: 263 LKIRKKKEYNPFPPAPVPSKIDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAK 322
Query: 239 RDAAFIPPEEPSRQNSCEAED 259
R AA +PPE+ S+ E+
Sbjct: 323 RTAALVPPEKRSKIKKMHFEE 343
>gi|156093946|ref|XP_001613011.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148801885|gb|EDL43284.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 301
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 155/217 (71%), Gaps = 8/217 (3%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L + + E+NL+EG M V TT+KT DPYII+KARD+I LLSRSVP A ++L+D
Sbjct: 71 IKNVLNNHFIKFEMNLIEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFTHAKRVLED 130
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E CDIIKI VRN+ +F+KRRQ L+G N +TLKALEILT CYI V G TV+ +G FK
Sbjct: 131 ETFCDIIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEILTSCYICVHGKTVSVIGFFKA 190
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--- 178
LK VRRI+ DCM+N +HPVYHIK L+ K+EL+K+ NENW+++LP FKK+N +++
Sbjct: 191 LKVVRRIIIDCMKN-IHPVYHIKELIAKRELQKNEEFKNENWEKYLPNFKKRNAQRRKIK 249
Query: 179 ----KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
K K +K+ + FPP P KID +E+GEYF+
Sbjct: 250 QKLEKKKGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 286
>gi|323349604|gb|EGA83823.1| Krr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 217
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/153 (73%), Positives = 133/153 (86%), Gaps = 1/153 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D
Sbjct: 60 VTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQD 119
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKG
Sbjct: 120 DMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKG 179
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEK 154
LK+VRR+VEDCM+N +HP+YHIK LM+K+EL K
Sbjct: 180 LKEVRRVVEDCMKN-IHPIYHIKELMIKRELAK 211
>gi|357625461|gb|EHJ75900.1| hypothetical protein KGM_05036 [Danaus plexippus]
Length = 243
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 182/247 (73%), Gaps = 10/247 (4%)
Query: 43 IRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT 102
++LLSRSVP QA+++LDDE+ CDIIKI + V KE F+KRRQ L+GPN TLK++E+LT
Sbjct: 1 MKLLSRSVPFEQAVRVLDDEIGCDIIKINSFVSKKETFLKRRQRLIGPNGVTLKSIELLT 60
Query: 103 GCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANEN 162
CY+LVQGNTV+ +G +KGL QVRRIVED M+N +HP+Y+IK LM+K+EL KDP L NE+
Sbjct: 61 DCYVLVQGNTVSTVGPYKGLLQVRRIVEDTMKN-IHPMYNIKNLMIKRELMKDPKLKNES 119
Query: 163 WDRFLPKFKKKNV-KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKW 221
WDRFLPKFK KNV +++ +KKPYTPFPPP SKIDK L SGEYFL + +K++K+
Sbjct: 120 WDRFLPKFKSKNVPRKQPKNKIKKKPYTPFPPPQPESKIDKELASGEYFLKDEQKKAKRH 179
Query: 222 QEKQEKQ--AEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 279
EK+EKQ A+K + +RK+D FIPP EP+ ++ +E T D+ K K KK+
Sbjct: 180 HEKEEKQMLAKKARQEERKKD--FIPPTEPASSHNKVSEQSTVDI----NQFKAKMKKVS 233
Query: 280 KQKFAEN 286
KQ A N
Sbjct: 234 KQNKALN 240
>gi|195350218|ref|XP_002041638.1| GM16638 [Drosophila sechellia]
gi|194123411|gb|EDW45454.1| GM16638 [Drosophila sechellia]
Length = 314
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/283 (45%), Positives = 179/283 (63%), Gaps = 34/283 (12%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ L E+ + EL+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L
Sbjct: 60 LVEQCLAEHHLKAELDLMEGSMVVRTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQ 119
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIGNLV + R NTV+A+G +K
Sbjct: 120 DDIGCDIIKIGNLVHRRRR-------------------------------NTVSALGPYK 148
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GL+QVR IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K
Sbjct: 149 GLQQVRDIVLETMNN-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQ 207
Query: 181 KSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 238
+K+ YTPFPP SK+DK L SGEYFL++ +K++K+ QE+ EKQ E + +
Sbjct: 208 PKVKKQKKEYTPFPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEASKRQDER 267
Query: 239 RDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 281
R+ F+PP E S +S + ED + K+LK K K K+
Sbjct: 268 RNKDFVPPTEESAASSRKKEDGSTSNKVDVKALKAKLIKANKK 310
>gi|116194448|ref|XP_001223036.1| 90S preribosome/SSU processome component KRR1 [Chaetomium globosum
CBS 148.51]
gi|88179735|gb|EAQ87203.1| hypothetical protein CHGG_03822 [Chaetomium globosum CBS 148.51]
Length = 291
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/252 (50%), Positives = 168/252 (66%), Gaps = 34/252 (13%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V AL ++G++ L+L+EGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+
Sbjct: 57 LVTKALDKHGITATLDLIEGSMTVKTTKKTFDPAAILNARDLIKLLARSVPAPQAIKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D M CDI+KI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG
Sbjct: 117 DGMACDILKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTETYILVHGNTVSVMG--- 173
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-- 178
+K+EL KDP LA+E+W R+LP FKK+ + ++
Sbjct: 174 ---------------------------IKRELAKDPELAHEDWSRYLPNFKKRTLSKRRT 206
Query: 179 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 236
KV K KK YTPFPP P+ SK+D+ +E+GEYFL + K E+ EK +K E K
Sbjct: 207 PFKVTDKAKKTYTPFPPAPEKSKVDQQIETGEYFLGKEAKHRAAEAERAEKAKQKKEEKK 266
Query: 237 RKRDAAFIPPEE 248
R+R+ ++PPEE
Sbjct: 267 REREREYVPPEE 278
>gi|67478464|ref|XP_654627.1| RNA-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|56471694|gb|EAL49241.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449701660|gb|EMD42436.1| RNA-binding protein, putative [Entamoeba histolytica KU27]
Length = 255
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/207 (56%), Positives = 156/207 (75%), Gaps = 15/207 (7%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL E + EL+LV+G MTV TTRKT DP+II+KARD+++LLSR VPA +AIK+L
Sbjct: 46 VINKALDEVCLKGELDLVKGIMTVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAIKVLQ 105
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIGN+++NKERFVKRRQ LVGPN +T KA+EILTGC+IL+QG TV+ +GS
Sbjct: 106 DQYWCDIIKIGNMIKNKERFVKRRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPS 165
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVK--- 176
G+K VR+IVEDCM N +HP+Y+IK LM+KKEL K+ + NE+W R++P++ KK+N K
Sbjct: 166 GIKMVRKIVEDCMDN-IHPIYNIKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEK 224
Query: 177 ----------QKKVKSKEKKPYTPFPP 193
KK ++KK Y+PFPP
Sbjct: 225 LKEIKKKKKELKKKIIEKKKNYSPFPP 251
>gi|407039095|gb|EKE39456.1| RNA-binding protein, putative [Entamoeba nuttalli P19]
Length = 255
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/207 (56%), Positives = 156/207 (75%), Gaps = 15/207 (7%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL E + EL+LV+G MTV TTRKT DP+II+KARD+++LLSR VPA +AIK+L
Sbjct: 46 VINKALDEVCLKGELDLVKGIMTVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAIKVLQ 105
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIGN+++NKERFVKRRQ LVGPN +T KA+EILTGC+IL+QG TV+ +GS
Sbjct: 106 DQYWCDIIKIGNMIKNKERFVKRRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPS 165
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVK--- 176
G+K VR+IVEDCM N +HP+Y+IK LM+KKEL K+ + NE+W R++P++ KK+N K
Sbjct: 166 GIKMVRKIVEDCMDN-IHPIYNIKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEK 224
Query: 177 ----------QKKVKSKEKKPYTPFPP 193
KK ++KK Y+PFPP
Sbjct: 225 LKEIKKKKKELKKKIIEKKKNYSPFPP 251
>gi|167379708|ref|XP_001735249.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902848|gb|EDR28568.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 255
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 156/207 (75%), Gaps = 15/207 (7%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ AL E + EL+LV+G MTV TTRKT DP+II+KARD+++LLSR VPA +A+K+L
Sbjct: 46 VINKALDEVCLKGELDLVKGIMTVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAVKVLQ 105
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D+ CDIIKIGN+++NKERFVKRRQ LVGPN +T KA+EILTGC+IL+QG TV+ +GS
Sbjct: 106 DQYWCDIIKIGNMIKNKERFVKRRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPS 165
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVK--- 176
G+K VR+IVEDCM N +HP+Y+IK LM+KKEL K+ + NE+W R++P++ KK+N K
Sbjct: 166 GIKMVRKIVEDCMDN-IHPIYNIKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEK 224
Query: 177 ----------QKKVKSKEKKPYTPFPP 193
KK ++KK Y+PFPP
Sbjct: 225 LKEIKKKKKELKKKIIEKKKNYSPFPP 251
>gi|123455111|ref|XP_001315303.1| ribosomal RNA assembly protein mis3 [Trichomonas vaginalis G3]
gi|121897975|gb|EAY03080.1| ribosomal RNA assembly protein mis3, putative [Trichomonas
vaginalis G3]
Length = 298
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 148/210 (70%), Gaps = 1/210 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ + YG++ E++ G++++ TT KT DP I+ ARD I+L++RSVP QA ++ ++
Sbjct: 45 IQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARDAIKLVARSVPIEQAFRVFEE 104
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ +II IG +RN+ERF KRRQ L+GP STLKALE+LT CYILVQG+TV+ +G+ +G
Sbjct: 105 GTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELLTQCYILVQGHTVSIIGNIRG 164
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+ ++V DCM N +HPVYHIK LMVK++L K+PA+ANE+WDR+LPK K +K K
Sbjct: 165 INDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKATKHTEKKK 223
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+ P PQ +++DK +ESGEYFL
Sbjct: 224 KVHNERNRGLPDYPQDTEVDKQIESGEYFL 253
>gi|311302994|gb|ADP89071.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303000|gb|ADP89074.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303004|gb|ADP89076.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 148/210 (70%), Gaps = 1/210 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ + YG++ E++ G++++ TT KT DP I+ ARD I+L++RSVP QA ++ ++
Sbjct: 26 IQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARDAIKLVARSVPIEQAFRVFEE 85
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ +II IG +RN+ERF KRRQ L+GP STLKALE+LT CYILVQG+TV+ +G+ +G
Sbjct: 86 GTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELLTQCYILVQGHTVSIIGNIRG 145
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+ ++V DCM N +HPVYHIK LMVK++L K+PA+ANE+WDR+LPK K +K K
Sbjct: 146 INDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKATKHTEKKK 204
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+ P PQ +++DK +ESGEYFL
Sbjct: 205 KVHNERNRGLPDYPQDTEVDKQIESGEYFL 234
>gi|72390515|ref|XP_845552.1| ribosomal RNA assembly protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358823|gb|AAX79276.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei]
gi|70802087|gb|AAZ11993.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 325
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 152/230 (66%), Gaps = 16/230 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ ++ +L+L+EGSMTV+TTR+T DPY IVKARD IRLL+R+VP QA KI
Sbjct: 88 VETVLGQHQLTGKLDLMEGSMTVATTRRTWDPYAIVKARDFIRLLARNVPLAQAQKIFQT 147
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDII I ++ RF+KRR L+GP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 148 EITCDIIPISLKGKSTRRFIKRRDRLIGPKAQTLKALEILTGCYVLVQGKTVAVMGPVKG 207
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK--------- 172
+QVR+IV+DCM N +HP+Y +K L++K+EL K L +E+W RF+P +KK
Sbjct: 208 CQQVRKIVDDCMNN-IHPIYGLKQLLIKRELAKREDLKHEDWSRFIPVYKKTLQNKEKAK 266
Query: 173 ------KNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 216
K Q +K + K + FPP P K D +ESG+ FL +K+
Sbjct: 267 AVKKAKKEKLQASLKKQANKEKSVFPPAPPKRKEDIAMESGKAFLVGQKR 316
>gi|407416655|gb|EKF37751.1| hypothetical protein MOQ_002048 [Trypanosoma cruzi marinkellei]
Length = 292
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 155/240 (64%), Gaps = 25/240 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ + +L+L+EGSMTV+TTR+T DPYIIVKARD IRLL+R+VP QA KI
Sbjct: 51 VETVLGQHQLVGKLDLMEGSMTVATTRRTWDPYIIVKARDFIRLLARNVPLAQAQKIFQT 110
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDII I + RF+KRR LVGP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 111 EITCDIIPISMKGNSTRRFIKRRDRLVGPKAQTLKALEILTGCYVLVQGKTVAVMGPVKG 170
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK-------- 173
+QVR+IV+DCM N +HP+Y +K L++K+EL K L +E+W RF+P +KK
Sbjct: 171 CQQVRKIVDDCM-NNIHPIYGLKQLLIKRELAKREDLRHEDWSRFIPVYKKSVQNKEKAK 229
Query: 174 ----------NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL---SERKKESKK 220
V KK KEK + FPP P K D +ESG+ FL +R+++ K+
Sbjct: 230 AVRKVKKERLRVSLKKQAGKEK---SIFPPAPPKRKEDIAMESGKAFLLRPQQRRQQPKR 286
>gi|71422464|ref|XP_812143.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876887|gb|EAN90292.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 292
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 148/228 (64%), Gaps = 22/228 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ + +L+L+EGSMTV+TTR+T DPYIIVKARD IRLL+R+VP QA KI
Sbjct: 51 VETVLGQHQLVGKLDLMEGSMTVATTRRTWDPYIIVKARDFIRLLARNVPLAQAQKIFQT 110
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDII I + RF+KRR LVGP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 111 EITCDIIPISMKGNSTRRFIKRRDRLVGPKAQTLKALEILTGCYVLVQGKTVAVMGPVKG 170
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK-------- 173
+QVR+IV+DCM N +HP+Y +K L++K+EL K L +E+W RF+P +KK
Sbjct: 171 CQQVRKIVDDCMNN-IHPIYGLKQLLIKRELAKREDLRHEDWSRFIPVYKKSVQNKEKAK 229
Query: 174 ----------NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
V KK KEK + FPP P K D +ESG+ FL
Sbjct: 230 AVRKVKKERLRVSLKKQAGKEK---SIFPPAPPKRKEDLAMESGKAFL 274
>gi|71650197|ref|XP_813801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878720|gb|EAN91950.1| hypothetical protein, conserved [Trypanosoma cruzi]
gi|407851896|gb|EKG05594.1| hypothetical protein TCSYLVIO_003331 [Trypanosoma cruzi]
Length = 292
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 25/240 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ + +L+L+EGSMTV+TTR+T DPYIIVKARD IRLL+R+VP QA KI
Sbjct: 51 VETVLGQHQLVGKLDLMEGSMTVATTRRTWDPYIIVKARDFIRLLARNVPLAQAQKIFQT 110
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDII I + RF+KRR LVGP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 111 EITCDIIPISMKGNSTRRFIKRRDRLVGPKAQTLKALEILTGCYVLVQGKTVAVMGPVKG 170
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK-------- 173
+QVR+IV+DCM N +HP+Y +K L++K+EL K L +E+W RF+P +KK
Sbjct: 171 CQQVRKIVDDCM-NNIHPIYGLKQLLIKRELAKREDLRHEDWSRFIPVYKKSVQNKEKAK 229
Query: 174 ----------NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL---SERKKESKK 220
V KK KEK + FPP P K D +ESG FL +R+++ K+
Sbjct: 230 AVRKVKKERLRVSLKKQAGKEK---SIFPPAPPKRKEDIAMESGRAFLLRPQQRRQQPKR 286
>gi|311302998|gb|ADP89073.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 148/210 (70%), Gaps = 1/210 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ + YG++ E++ G++++ TT KT DP I+ ARD I+L++RSVP QA ++ ++
Sbjct: 26 IQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARDAIKLVARSVPIEQAFRVFEE 85
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ +II IG +RN+ERF KRRQ L+GP STLKALE+LT CYILVQG+TV+ +G+ +G
Sbjct: 86 GTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELLTQCYILVQGHTVSIIGNIRG 145
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+ ++V DCM N +HPVYHIK LMVK++L K+PA+ANE+WDR+LPK K +K K
Sbjct: 146 INDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKATKHTEKKK 204
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+ P PQ ++++K +ESGEYFL
Sbjct: 205 KVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|261328960|emb|CBH11938.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 287
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 152/230 (66%), Gaps = 16/230 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ ++ +L+L+EGSMTV+TTR+T DPY IVKARD IRLL+R+VP QA KI
Sbjct: 50 VETVLGQHQLTGKLDLMEGSMTVATTRRTWDPYAIVKARDFIRLLARNVPLAQAQKIFQT 109
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDII I ++ RF+KRR L+GP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 110 EITCDIIPISLKGKSTRRFIKRRDRLIGPKAQTLKALEILTGCYVLVQGKTVAVMGPVKG 169
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK--------- 172
+QVR+IV+DCM N +HP+Y +K L++K+EL K L +E+W RF+P +KK
Sbjct: 170 CQQVRKIVDDCMNN-IHPIYGLKQLLIKRELAKREDLKHEDWSRFIPVYKKTLQNKEKAK 228
Query: 173 ------KNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 216
K Q +K + K + FPP P K D +ESG+ FL +K+
Sbjct: 229 AVKKAKKEKLQASLKKQANKEKSVFPPAPPKRKEDIAMESGKAFLVGQKR 278
>gi|403271962|ref|XP_003927865.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Saimiri boliviensis boliviensis]
Length = 331
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 141/184 (76%), Gaps = 12/184 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSYEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKMEAI 245
Query: 181 KSKE 184
K+K+
Sbjct: 246 KAKQ 249
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAVSKRQEERNKAFIPPKE 269
>gi|311303002|gb|ADP89075.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 148/210 (70%), Gaps = 1/210 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ + YG++ E++ G++++ TT KT DP I+ ARD I+L++RSVP QA ++ ++
Sbjct: 26 IQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARDAIKLVARSVPIEQAFRVFEE 85
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ +II IG +RN+ERF KRRQ L+GP STLKALE+LT CYIL+QG+TV+ +G+ +G
Sbjct: 86 GTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELLTQCYILIQGHTVSIIGNIRG 145
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+ ++V DCM N +HPVYHIK LMVK++L K+PA+ANE+WDR+LPK K +K K
Sbjct: 146 INDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKATKHTEKKK 204
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+ P PQ ++++K +ESGEYFL
Sbjct: 205 KVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|291000911|ref|XP_002683022.1| predicted protein [Naegleria gruberi]
gi|284096651|gb|EFC50278.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 167/237 (70%), Gaps = 4/237 (1%)
Query: 15 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 74
LN EG + + TT +T DP+II K RD ++L+SR V +A ++L+D + +++KIGNL
Sbjct: 56 LNCKEGKIIIETTERTFDPFIIFKGRDCLQLVSRGVAFEEAKRVLEDNVFSEVMKIGNLC 115
Query: 75 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 134
RNKE F KRRQ L GP+ STLKAL++LTGC+I +QG TV+ +G G+K V ++ DCM
Sbjct: 116 RNKEVFTKRRQRLFGPDGSTLKALQLLTGCFIFIQGKTVSVIGEVNGIKLVSEVITDCMN 175
Query: 135 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK---KNVKQKKVKSKEKKPYTPF 191
N +HP+YHIK LMVKKEL+ AN +WD++LPKFKK K++ +KK K +KK YTPF
Sbjct: 176 N-IHPIYHIKQLMVKKELKNSSEYANVSWDKYLPKFKKTVNKSIVKKKKKKIQKKEYTPF 234
Query: 192 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
P P+ SK D +E+GEYFLS+ +K+ K+ E+ EKQ EK E K+++D + P+E
Sbjct: 235 PNAPEKSKKDIEIETGEYFLSKEEKQLKQVSERTEKQKEKKEEKKKQQDKLYEAPKE 291
>gi|296212422|ref|XP_002752823.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Callithrix jacchus]
Length = 323
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 141/184 (76%), Gaps = 12/184 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL
Sbjct: 78 LVQKALIEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKMEAI 245
Query: 181 KSKE 184
K+K+
Sbjct: 246 KAKQ 249
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 194 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 253
P KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 215 PIYNIKIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPVVK 274
Query: 254 SCEAEDKTN-DVAAM 267
+A +T DVA++
Sbjct: 275 PKKASTETKIDVASI 289
>gi|390371134|dbj|GAB65015.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 283
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 142/217 (65%), Gaps = 23/217 (10%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K L + V E+NL+EG M ARD+I LLSRSVP A ++LDD
Sbjct: 71 IKNVLNNHFVKFEMNLIEGYMC---------------ARDMISLLSRSVPFSHAKRVLDD 115
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E CDIIKI VRNK +F+KRRQ L+G N +TLKALEILT CYI V G TV+ +G FK
Sbjct: 116 ETFCDIIKISTYVRNKNKFIKRRQRLLGSNGTTLKALEILTNCYICVHGKTVSVIGYFKA 175
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--- 178
LK VRRI+ DCM+N +HPVYHIK L+ K+ELEK+ NENW++FLP FKK+N +++
Sbjct: 176 LKVVRRIIVDCMKN-IHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNAQRRKIK 234
Query: 179 ----KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
K K +K+ + FPP P KID +E+GEYF+
Sbjct: 235 QKLDKKKGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 271
>gi|311302996|gb|ADP89072.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 147/210 (70%), Gaps = 1/210 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ + YG++ E++ G++++ TT KT DP I+ ARD I+L++RSVP QA ++ ++
Sbjct: 26 IQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARDAIKLVARSVPIEQAFRVFEE 85
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ +II IG +RN+ERF KRRQ L+GP STLKALE+LT CYILVQG+TV+ +G+ G
Sbjct: 86 GTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELLTQCYILVQGHTVSIIGNICG 145
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+ ++V DCM N +HPVYHIK LMVK++L K+PA+ANE+WDR+LPK K +K K
Sbjct: 146 INDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKATKHTEKKK 204
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 211
+ P PQ ++++K +ESGEYFL
Sbjct: 205 KVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|410965128|ref|XP_003989104.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Felis catus]
Length = 324
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 141/184 (76%), Gaps = 12/184 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKASQKKRQKMEAI 245
Query: 181 KSKE 184
K+K+
Sbjct: 246 KAKQ 249
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 220 KIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 269
>gi|335288274|ref|XP_003355571.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Sus scrofa]
Length = 318
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 141/184 (76%), Gaps = 12/184 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 72 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 131
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 132 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 191
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +
Sbjct: 192 GLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKSSQKKRQKMEAI 239
Query: 181 KSKE 184
K+K+
Sbjct: 240 KAKQ 243
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 258
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 214 KIDKELASGEYFLKSSQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVVKPKEAS 273
Query: 259 DKTN-DVAAM 267
+T DVA +
Sbjct: 274 TETKIDVATI 283
>gi|397526020|ref|XP_003832939.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Pan paniscus]
Length = 324
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 141/184 (76%), Gaps = 12/184 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILH 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKMEAI 245
Query: 181 KSKE 184
K+K+
Sbjct: 246 KAKQ 249
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 258
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEAS 279
Query: 259 DKTN-DVAAM 267
+T DVA++
Sbjct: 280 TETKIDVASI 289
>gi|395744608|ref|XP_003778133.1| PREDICTED: KRR1 small subunit processome component homolog [Pongo
abelii]
Length = 324
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 141/184 (76%), Gaps = 12/184 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKMEAI 245
Query: 181 KSKE 184
K+K+
Sbjct: 246 KAKQ 249
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 258
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEAS 279
Query: 259 DKTN-DVAAM 267
+T DVA++
Sbjct: 280 AETKIDVASI 289
>gi|340054290|emb|CCC48586.1| putative ribosomal RNA assembly protein [Trypanosoma vivax Y486]
Length = 284
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 152/236 (64%), Gaps = 22/236 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ ++ +L+L+EGSMTV+TTR+T DPY +VKARD IRLL+R+VP QA KI
Sbjct: 49 VEAVLAQHQLTGQLDLLEGSMTVATTRRTWDPYAVVKARDFIRLLARNVPLAQAQKIFQT 108
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDII I ++ F+KRR LVGP + TLKALEILTGCY+LVQG TV+ MG KG
Sbjct: 109 EITCDIIPISLKGKSTRCFIKRRDRLVGPKAQTLKALEILTGCYVLVQGKTVSVMGPVKG 168
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK-------- 173
+QVR+IV+DCM N +HPVY ++ L++K+EL K L +E+W RF+P +KK
Sbjct: 169 CQQVRKIVDDCMNN-IHPVYGLQQLLIKRELSKREDLKHEDWSRFIPVYKKTVQTKEKAK 227
Query: 174 ----------NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 219
+K KEK + FPP P K D +ESGE FL +++ + +
Sbjct: 228 AVRKAKKERLRASLEKQAGKEK---SIFPPAPPKRKEDLAMESGEAFLVKKRHQKR 280
>gi|154341947|ref|XP_001566925.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064250|emb|CAM40449.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 153/239 (64%), Gaps = 16/239 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L+++ + L+L+EGSM V+TTR+T DPY IV ARD I+LL+R+VP QA KI
Sbjct: 52 VEELLEQHQLVGRLDLMEGSMAVATTRRTWDPYAIVDARDFIKLLARNVPLAQAQKIFQT 111
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDII IG + RFVKRR L+GP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 112 DITCDIINIGVKGGSVRRFVKRRDRLIGPKAQTLKALEILTGCYVLVQGKTVAVMGPVKG 171
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
+ VR IVEDCM N +HP+Y +K L++K+EL K + +E+W RF+P +KK KQK
Sbjct: 172 TQMVRSIVEDCMNN-IHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQK 230
Query: 179 KVKSKEK------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQ 225
V+ +K K T FPP P D +ESG+ FL+ R++ K+ E Q
Sbjct: 231 AVRKMKKERMKDLKHKQAGKVKTIFPPAPPKRLEDIAMESGQAFLAPRQRRPKEELELQ 289
>gi|157872762|ref|XP_001684909.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127979|emb|CAJ06702.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 321
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 152/239 (63%), Gaps = 16/239 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ + +L+L+EGSMTV+TTR+T DPY I+ ARD I+LL+R+VP QA KI
Sbjct: 52 VEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVPLAQAQKIFQT 111
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDII I + RFVKRR L+GP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 112 DITCDIINISVKGGSVRRFVKRRDRLIGPQAQTLKALEILTGCYVLVQGKTVAVMGPVKG 171
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
+ VR IVEDCM N +HP+Y +K L++K+EL K + +E+W RF+P +KK KQK
Sbjct: 172 TQMVRSIVEDCMNN-IHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQK 230
Query: 179 KVKSKEK------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQ 225
V+ +K K T FPP P D +ESG+ FL+ R++ K E Q
Sbjct: 231 AVRKMKKERMKESKRKQAGKEKTIFPPAPPKRLEDIAMESGQAFLAPRQRRRKDELELQ 289
>gi|116292726|gb|ABJ97679.1| HRB2 variant B [Homo sapiens]
Length = 324
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 140/184 (76%), Gaps = 12/184 (6%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKR Q LVGP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRGQRLVGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 180
GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKMEAI 245
Query: 181 KSKE 184
K+K+
Sbjct: 246 KAKQ 249
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKE 269
>gi|401425923|ref|XP_003877446.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493691|emb|CBZ28981.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 321
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/242 (48%), Positives = 154/242 (63%), Gaps = 22/242 (9%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ + +L+L+EGSMTV+TTR+T DPY I+ ARD I+LL+R+VP QA KI
Sbjct: 52 VEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVPLAQAQKIFQA 111
Query: 62 EMQCDIIKI---GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGS 118
++ CDII I G VR RFVKRR L+GP + TLKALEILTGCY+LVQG TVA MG
Sbjct: 112 DITCDIINISVKGGSVR---RFVKRRDRLIGPKAQTLKALEILTGCYVLVQGKTVAVMGP 168
Query: 119 FKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN---V 175
KG + VR IVEDCM N +HP+Y +K L++K+EL K + +E+W RF+P +KK
Sbjct: 169 VKGTQMVRSIVEDCMNN-IHPIYGLKQLLIKRELAKREDMKHEDWSRFIPVYKKTQPNKE 227
Query: 176 KQKKVKSKEK------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQE 223
KQK V+ +K K T FPP P D +ESG+ FL+ R++ K E
Sbjct: 228 KQKAVRKMKKERMKESKRKQAGKEKTIFPPAPPRRLEDIAMESGQAFLAPRQRRHKDELE 287
Query: 224 KQ 225
Q
Sbjct: 288 LQ 289
>gi|146094080|ref|XP_001467151.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134071515|emb|CAM70204.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 321
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 158/255 (61%), Gaps = 16/255 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ + +L+L+EGSMTV+TTR+T DPY I+ ARD I+LL+R+VP QA KI
Sbjct: 52 VEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVPLAQAQKIFQT 111
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDII I + RFVKRR L+GP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 112 DITCDIINISVKGGSVRRFVKRRDRLIGPQAQTLKALEILTGCYVLVQGKTVAVMGPVKG 171
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
+ VR IVEDCM N +HP+Y +K L++K+EL K + +E+W RF+P +KK KQK
Sbjct: 172 TQMVRSIVEDCMNN-IHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQK 230
Query: 179 KVKSKEK------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 226
V+ +K K + FPP P D +ESG+ FL+ R++ E Q
Sbjct: 231 AVRKMKKERMKEAKRKQAGKEKSIFPPAPPKRLEDIAMESGQAFLAPRQRRHTDELELQS 290
Query: 227 KQAEKTAENKRKRDA 241
+ + + R R++
Sbjct: 291 ATSPSPSASARTRNS 305
>gi|398019704|ref|XP_003863016.1| hypothetical protein, conserved [Leishmania donovani]
gi|322501247|emb|CBZ36326.1| hypothetical protein, conserved [Leishmania donovani]
Length = 321
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 149/230 (64%), Gaps = 16/230 (6%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ L ++ + +L+L+EGSMTV+TTR+T DPY I+ ARD I+LL+R+VP QA KI
Sbjct: 52 VEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVPLAQAQKIFQT 111
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
++ CDII I + RFVKRR L+GP + TLKALEILTGCY+LVQG TVA MG KG
Sbjct: 112 DITCDIINISVKGGSVRRFVKRRDRLIGPQAQTLKALEILTGCYVLVQGKTVAVMGPVKG 171
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQK 178
+ VR IVEDCM N +HP+Y +K L++K+EL K + +E+W RF+P +KK KQK
Sbjct: 172 TQMVRSIVEDCMNN-IHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQK 230
Query: 179 KVKSKEK------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKK 216
V+ +K K + FPP P D +ESG+ FL+ R++
Sbjct: 231 AVRKMKKERMKEAKRKQAGKEKSIFPPAPPKRLEDIAMESGQAFLAPRQR 280
>gi|308158862|gb|EFO61423.1| KRR1 [Giardia lamblia P15]
Length = 328
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 139/206 (67%), Gaps = 10/206 (4%)
Query: 9 YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 68
YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+ CDII
Sbjct: 82 YGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDII 141
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+ VR I
Sbjct: 142 RIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTNTKIQVQGNTVAVMGASRGVGLVRNI 201
Query: 129 VEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKKVKSKE 184
V DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K K K
Sbjct: 202 VTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKVAKRKR 261
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYF 210
+K SK+D+ L SGEYF
Sbjct: 262 EKQEAAI------SKVDQQLASGEYF 281
>gi|159112012|ref|XP_001706236.1| KRR1 [Giardia lamblia ATCC 50803]
gi|157434330|gb|EDO78562.1| KRR1 [Giardia lamblia ATCC 50803]
Length = 328
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 139/206 (67%), Gaps = 10/206 (4%)
Query: 9 YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 68
YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+ CDII
Sbjct: 82 YGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDII 141
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+ VR I
Sbjct: 142 RIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVGLVRNI 201
Query: 129 VEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKKVKSKE 184
V DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K K K
Sbjct: 202 VTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKVAKRKR 261
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYF 210
+K SK+D+ L SGEYF
Sbjct: 262 EKQEAAI------SKVDQQLASGEYF 281
>gi|22901766|gb|AAN10062.1| KRR1 [Giardia intestinalis]
Length = 305
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 144/215 (66%), Gaps = 11/215 (5%)
Query: 9 YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 68
YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+ CDII
Sbjct: 59 YGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDII 118
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+ VR I
Sbjct: 119 RIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVGLVRNI 178
Query: 129 VEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKKVKSKE 184
V DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K K K
Sbjct: 179 VTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKVAKRKR 238
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 219
+K SK+D+ L SGEYF + R+ E K
Sbjct: 239 EKQEAAI------SKVDQQLASGEYF-ARREGEEK 266
>gi|387597248|gb|EIJ94868.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm1]
Length = 294
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 154/225 (68%), Gaps = 2/225 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ AL + ++ ++ E + V TT TRDPY+I++ RD ++L+SR VP +AI++ +D
Sbjct: 67 IRKALAQRRLALIVDYHELILKVETTPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFED 126
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ DII I RNKE F+KRR+ L+GP +T+K+LE+LT CYIL GNTV+A+G++K
Sbjct: 127 GITHDIIPINVFTRNKEIFLKRRERLIGPRGNTIKSLELLTDCYILSFGNTVSAIGNYKS 186
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VR +V CM+N +HP+Y IK LM+++ELEKDPAL ENW+R++P++KK + K++KV
Sbjct: 187 LKEVRNVVTKCMEN-IHPIYEIKKLMIRRELEKDPALKTENWERYMPQYKKTHSKKRKVT 245
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 226
EK FP P Q K DK + SG Y +R K++ K+E
Sbjct: 246 IVEKTYRNTFPEPEQ-RKQDKEMMSGTYVHKDRPKKNSSPNTKKE 289
>gi|387593593|gb|EIJ88617.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm3]
Length = 294
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 154/225 (68%), Gaps = 2/225 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ AL + ++ ++ E + V TT TRDPY+I++ RD ++L+SR VP +AI++ +D
Sbjct: 67 IRKALAQRRLALIVDYHELILKVETTPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFED 126
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ DII I RNKE F+KRR+ L+GP +T+K+LE+LT CYIL GNTV+A+G++K
Sbjct: 127 GITHDIIPINVFTRNKEIFLKRRERLIGPRGNTIKSLELLTDCYILSFGNTVSAIGNYKS 186
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VR +V CM+N +HP+Y IK LM+++ELEKDPAL ENW+R++P++KK + K++KV
Sbjct: 187 LKEVRNVVTMCMEN-IHPIYEIKKLMIRRELEKDPALKTENWERYMPQYKKTHSKKRKVT 245
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 226
EK FP P Q K DK + SG Y +R K++ K+E
Sbjct: 246 IVEKTYRNTFPEPEQ-RKQDKEMMSGTYVHKDRPKKNSSPNTKKE 289
>gi|335775912|gb|AEH58730.1| KRR1 small subunit processome component-like protein [Equus
caballus]
Length = 220
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/144 (65%), Positives = 123/144 (85%), Gaps = 1/144 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFN 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIK 144
GLK+VR++V D M+N +HP+Y+IK
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIK 220
>gi|432096558|gb|ELK27205.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 273
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/144 (65%), Positives = 123/144 (85%), Gaps = 1/144 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F
Sbjct: 138 DDIACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIK 144
GLK+VR++V D M+N +HP+Y+IK
Sbjct: 198 GLKEVRKVVLDTMKN-IHPIYNIK 220
>gi|253744746|gb|EET00901.1| KRR1 [Giardia intestinalis ATCC 50581]
Length = 328
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 139/206 (67%), Gaps = 10/206 (4%)
Query: 9 YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 68
YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+ CDII
Sbjct: 82 YGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDII 141
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+ VR I
Sbjct: 142 RIKNMTPRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVGLVRNI 201
Query: 129 VEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKKVKSKE 184
V DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K K K
Sbjct: 202 VTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKVAKRKC 261
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYF 210
+K SKID+ L SGEYF
Sbjct: 262 EKQEAAI------SKIDQQLASGEYF 281
>gi|378755182|gb|EHY65209.1| ribosomal RNA assembly protein mis3 [Nematocida sp. 1 ERTm2]
Length = 294
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 150/219 (68%), Gaps = 2/219 (0%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ AL + + ++ E + V TT TRDPY++++ RD+++L+SR VP +AI++ +D
Sbjct: 67 IRKALAQKTLLLAVDYHELVLKVETTPHTRDPYVVLQGRDMLKLVSRGVPLEKAIRVFED 126
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
+ DII I RNKE F+KRR+ L+GP +T+K+LE+LT CYIL GNTV+A+G++K
Sbjct: 127 GITHDIIPINVFTRNKEIFLKRRERLLGPRGNTIKSLELLTDCYILPFGNTVSAIGNYKS 186
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
LK+VR +V CM+N +HP+Y IK LM+++ELEKDPAL ENW+R+LPK+KK + K++K
Sbjct: 187 LKEVRTVVTKCMEN-IHPIYEIKRLMIRRELEKDPALKTENWERYLPKYKKTHSKKRKTV 245
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKK 220
EK T F P + K DK + SG Y +R S+K
Sbjct: 246 IVEKTNRTTF-PEQEERKQDKEIMSGAYVPKDRPTRSEK 283
>gi|346975397|gb|EGY18849.1| ribosomal RNA assembly protein mis3 [Verticillium dahliae VdLs.17]
Length = 216
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/144 (66%), Positives = 119/144 (82%), Gaps = 1/144 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V +L++YG++C L+L+EGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+
Sbjct: 57 LVTKSLEKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARDLIKLLARSVPAPQAVKILE 116
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D + CDIIKI NLV NK+RFVKRRQ L+GPN STLKALE+LT YILV GNTV+AMG +K
Sbjct: 117 DGVACDIIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELLTETYILVHGNTVSAMGPYK 176
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIK 144
GLK+VRRI M N +HP+Y IK
Sbjct: 177 GLKEVRRIAIQTMDN-IHPIYAIK 199
>gi|160331564|ref|XP_001712489.1| rip1 [Hemiselmis andersenii]
gi|159765937|gb|ABW98164.1| rip1 [Hemiselmis andersenii]
Length = 283
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 129/177 (72%), Gaps = 1/177 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++K L + + L+L G + VSTT+ T DP+ I+K RD ++L+SR VP QA KI +
Sbjct: 46 IIKKILNSFSIYSHLDLSFGFILVSTTKFTNDPFSIIKGRDFLKLISRGVPVEQAAKIFE 105
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ C+I+KI + +NK F+KRR+ L+G N ST++A+E++T +ILVQGNTV+ MG+
Sbjct: 106 DEIICEILKISHFSKNKNIFLKRRRRLIGNNGSTVRAIEMITKTFILVQGNTVSIMGNHS 165
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 177
GLKQVR+IV+DCM N +HP++HIK L++K+EL KD L ENWD++LP KKKN Q
Sbjct: 166 GLKQVRKIVQDCMNN-IHPIFHIKNLIIKQELSKDKFLKKENWDQYLPLLKKKNFNQ 221
>gi|440296337|gb|ELP89164.1| hypothetical protein EIN_485560 [Entamoeba invadens IP1]
Length = 255
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 138/203 (67%), Gaps = 16/203 (7%)
Query: 6 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 65
L+E+ + +++ ++GS + TTRKT DP+II+K RD+++L+ R A KIL D+ C
Sbjct: 50 LEEFKLKIDVDYLQGSFVIKTTRKTFDPFIIIKGRDMLKLIGRGADLELASKILLDDYWC 109
Query: 66 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
DIIKIGN+V +++R VKRRQ LVGPN +T KA+EILT C +VQG TVA +G +GLK V
Sbjct: 110 DIIKIGNMVVDRKRLVKRRQRLVGPNGATQKAIEILTECQFIVQGKTVAVIGKPEGLKLV 169
Query: 126 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 185
R+IVEDCM N +HPVY+IK LM++KEL K+ + +E+WDR++PK+ KK +K + K +
Sbjct: 170 RKIVEDCMNN-IHPVYNIKSLMIRKELAKNDKMKSESWDRYIPKYVKKYRPEKTEEEKLR 228
Query: 186 KP---------------YTPFPP 193
YTPFPP
Sbjct: 229 IKKKKEIKRKIIERKKNYTPFPP 251
>gi|256068106|ref|XP_002570691.1| hypothetical protein [Schistosoma mansoni]
Length = 180
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 127/178 (71%), Gaps = 8/178 (4%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 70
+ E+++ E +M V TT KT DP+II+KARD+IRLL+RSVP QAI++LDDE DII+I
Sbjct: 2 IRVEIDVAESTMEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEI 61
Query: 71 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+ N+ERFVKRR L+G + TLKALE+ T CYI+VQG TV+ +G + LK+VR+IV+
Sbjct: 62 N--LTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQ 119
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 188
C+ + +HP Y IK L++ K+L DP N +WDRFLPK K KKV S+ +KP+
Sbjct: 120 GCIYDNIHPAYSIKRLLIIKKLSMDPTKQNISWDRFLPKMK------KKVLSRRRKPH 171
>gi|358256270|dbj|GAA57747.1| ribosomal RNA assembly protein, partial [Clonorchis sinensis]
Length = 359
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 128/178 (71%), Gaps = 8/178 (4%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 70
+ EL+L E SM V TT KT DP+II+KARD++RLL+RSVP QAI++L D++ D+I+I
Sbjct: 2 IRAELDLTESSMEVRTTPKTFDPFIILKARDVMRLLARSVPFEQAIRVLQDDIFSDVIEI 61
Query: 71 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+ N+ERF+KRR L+G TLKALE+ T CYI+VQG TV+A+G ++ LKQVR+IV
Sbjct: 62 N--LTNRERFIKRRNRLIGYEGETLKALELSTNCYIVVQGKTVSAIGHYEDLKQVRKIVL 119
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 188
C+ + +HP Y IK L++ K+L+ DP + +WDRFLPK K KKV S+ +KP+
Sbjct: 120 GCIYDNIHPAYSIKRLLIIKKLQADPTKKDVSWDRFLPKLK------KKVLSRRRKPH 171
>gi|399949834|gb|AFP65491.1| Rev interacting protein Rip-1-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 282
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ LK Y + L++ GS+T++TT+ T+DP +I+KAR + L+SRSVP QA KI D
Sbjct: 45 IIYRILKSYFIKPFLDISNGSITITTTKFTKDPCVILKARAFLLLISRSVPVQQAAKIFD 104
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
DE+ DIIKI + RNK+ F+KRR+ L+G N ST++A+E+ T Y+LVQGNTV+ MG+
Sbjct: 105 DEISFDIIKISSFTRNKKLFLKRRKRLIGLNGSTIRAIEMATQTYMLVQGNTVSCMGTHA 164
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 175
G+KQ R+IVEDCM+N +HP++HIKILM K+EL KDP L +W++++P KKN+
Sbjct: 165 GIKQSRKIVEDCMKN-VHPIFHIKILMTKQELSKDPTLQFVSWEKYIPFLNKKNL 218
>gi|353233461|emb|CCD80816.1| hypothetical protein Smp_115060 [Schistosoma mansoni]
Length = 168
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 120/167 (71%), Gaps = 8/167 (4%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
M V TT KT DP+II+KARD+IRLL+RSVP QAI++LDDE DII+I + N+ERFV
Sbjct: 1 MEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEIN--LTNRERFV 58
Query: 82 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 141
KRR L+G + TLKALE+ T CYI+VQG TV+ +G + LK+VR+IV+ C+ + +HP Y
Sbjct: 59 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYDNIHPAY 118
Query: 142 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 188
IK L++ K+L DP N +WDRFLPK K KKV S+ +KP+
Sbjct: 119 SIKRLLIIKKLSMDPTKQNISWDRFLPKMK------KKVLSRRRKPH 159
>gi|449328995|gb|AGE95270.1| hypothetical protein ECU04_0510 [Encephalitozoon cuniculi]
Length = 283
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
AL+ +SC ++L + + V T R TRDP+I +KA + ++L+ R V +A+K+L+DE
Sbjct: 44 ALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIKAVNFVKLVGRGVGIEEAMKVLEDEYF 103
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
C++I I +V + + F KRR LVGP TLKA++ILT CY+LV G TV+ +GSF+G+++
Sbjct: 104 CEVIDIKKMVSSDKVFEKRRDRLVGPKEMTLKAIQILTRCYVLVHGKTVSIIGSFRGVEE 163
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 184
++IV DCM N +HP+Y IK L+ K+++E D NE+W RFLP+ KK + K KK K
Sbjct: 164 AKKIVVDCMNN-IHPMYQIKRLVEKRKMESDETKENEDWSRFLPQVKKSSKKSKKKKVA- 221
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYFLSE 213
+P P K D +E+GEYF+ +
Sbjct: 222 GRPTGNMPEDAAKRKEDIEMETGEYFVRD 250
>gi|303388924|ref|XP_003072695.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
gi|303301837|gb|ADM11335.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
Length = 282
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 141/211 (66%), Gaps = 3/211 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ AL+ +SC++++ E ++ V T R TRDP+I VKA + ++L+SR V +A+K+L+D
Sbjct: 41 IEKALEAKKISCKIDMGERTIDVMTNRSTRDPFIFVKAVNFVKLVSRGVGIEEAMKVLED 100
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E C+++ I + +++ F KRR L+GP TLKA++ILT C++LV G TV+ +GSFKG
Sbjct: 101 EYFCEVVDIKKMASSEKVFEKRRDRLIGPKEMTLKAIQILTKCHVLVHGKTVSIIGSFKG 160
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+++V++IV DCM N +HP+Y I+ L+ K++LE+D + E+W RFLPK KK N K KK
Sbjct: 161 IEEVKKIVVDCMNN-IHPMYQIRSLIEKRKLEEDKSKEGEDWSRFLPKIKKSNKKSKKKV 219
Query: 182 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 212
P P + I+ +E+GEYF+
Sbjct: 220 VGRPSGNMPLDVPKRKEDIE--METGEYFVD 248
>gi|296086789|emb|CBI32938.3| unnamed protein product [Vitis vinifera]
Length = 96
Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats.
Identities = 81/93 (87%), Positives = 88/93 (94%)
Query: 63 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 122
MQC+IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY LVQGNTV AMGSFKGL
Sbjct: 1 MQCNIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYTLVQGNTVTAMGSFKGL 60
Query: 123 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKD 155
KQVRR+VEDC+QNKMHPVYH+K LM+K+EL +
Sbjct: 61 KQVRRVVEDCIQNKMHPVYHVKTLMMKRELASE 93
>gi|19074128|ref|NP_584734.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19068770|emb|CAD25238.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
Length = 283
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 135/209 (64%), Gaps = 2/209 (0%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
AL+ +SC ++L + + V T R TRDP+I +KA + ++L+ R V +A+K+L+DE
Sbjct: 44 ALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIKAVNFVKLVGRGVGIEEAMKVLEDEYF 103
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
C++I I +V + + F KRR LVGP TLKA++ILT CY+LV G TV+ +G F+G+++
Sbjct: 104 CEVIDIKKMVSSDKVFEKRRDRLVGPKEMTLKAIQILTRCYVLVHGKTVSIIGGFRGVEE 163
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 184
++IV DCM N +HP+Y IK L+ K+++E D NE+W RFLP+ KK+ K+ K K
Sbjct: 164 AKKIVVDCMNN-IHPMYQIKRLVEKRKMESDETKENEDWSRFLPQ-VKKSSKKSKKKKVV 221
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYFLSE 213
+P P K D +E+GEYF+ +
Sbjct: 222 GRPTGNMPEDAAKRKEDIEMETGEYFVRD 250
>gi|396081198|gb|AFN82816.1| putative RNA-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 281
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 138/215 (64%), Gaps = 7/215 (3%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
AL+ +SC+++L + + V T + TRDP+I +KA + ++L+SR V +A+K+L+DE
Sbjct: 44 ALEGKKISCKIDLEKRVIDVETNKSTRDPFIFIKAVNFVKLVSRGVGVEEAMKVLEDEYF 103
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
C++I I L + + F KRR L+GP TLKA++ILT CY+LV G TV+ +GSF+G+++
Sbjct: 104 CEVIDIKKLASSDKVFEKRRDRLIGPKEMTLKAIQILTKCYVLVHGKTVSIIGSFRGIEE 163
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 184
V++IV DCM N +HP+Y IK L+ K++LE D E+W RFLP+ KK N K KK
Sbjct: 164 VKKIVIDCMNN-IHPMYQIKKLVEKRKLEGDITKEGEDWSRFLPEIKKSNKKSKKKIIGR 222
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYF----LSERK 215
P P + I+ +E+GEYF LS RK
Sbjct: 223 HSGNMPSDIPKRKEDIE--METGEYFTDRELSGRK 255
>gi|401825966|ref|XP_003887077.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998235|gb|AFM98096.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 278
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 134/206 (65%), Gaps = 3/206 (1%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
AL+ +SC ++L + + V+T + TRDP+I +KA + ++L+SR V +A+K+L+DE
Sbjct: 44 ALEGKKISCNIDLEKRIIDVATNKSTRDPFIFIKAVNFVKLVSRGVGVEEAMKVLEDEYF 103
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
C++I I L + + F KRR L+GP TLKA++ILT CY+LV G TV+ +GSFKG+++
Sbjct: 104 CEVIDIKRLASSDKVFEKRRDRLIGPKEMTLKAIQILTKCYVLVHGKTVSIIGSFKGIEE 163
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 184
V++IV DCM N +HP+Y IK L+ K++LE D E+W RFLP+ KK N K KK
Sbjct: 164 VKKIVIDCMNN-IHPMYQIKKLVEKRKLEGDKTKEGEDWSRFLPEIKKSNKKSKKKIV-- 220
Query: 185 KKPYTPFPPPPQPSKIDKLLESGEYF 210
+P P K D +E+GEYF
Sbjct: 221 GRPSGGMPSDIPKRKEDIEMETGEYF 246
>gi|339234367|ref|XP_003382300.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978674|gb|EFV61623.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 167
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 97/116 (83%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+++ AL E+G+ E++ + GSMTV TTRKT DPY+I+KARDLI+LL+RSVP QA++IL+
Sbjct: 52 LLQKALSEHGIKAEMDALRGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIEQAVRILE 111
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 116
D+ CDIIKI LVRN+ RFVKRRQ L+GPN TLKA+E+LT CYI++QGNTV+A+
Sbjct: 112 DDTACDIIKISGLVRNRVRFVKRRQRLIGPNGCTLKAIELLTNCYIMIQGNTVSAV 167
>gi|300709315|ref|XP_002996823.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
gi|239606149|gb|EEQ83152.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
Length = 228
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 118/175 (67%), Gaps = 2/175 (1%)
Query: 5 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 64
AL+ +SC ++ VE S+ V T KTRDP+I VK D IRL++++V A+K+L+DE
Sbjct: 43 ALENKKLSCNIDSVERSIEVFTNTKTRDPFIFVKGCDFIRLVAKNVDVETAMKVLEDEYC 102
Query: 65 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
+II+I +V++++ F KRR L+G NS LKAL++++ CYI + G + +GS+ GL
Sbjct: 103 GEIIEIRKMVKSEKVFTKRRDRLIGKNSMVLKALKMISKCYIYITGKHIGVVGSYDGLTV 162
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK--KNVKQ 177
V++IV DC+ N HP+Y IK L+VK +L +D + NE+W R +P +KK KN KQ
Sbjct: 163 VKQIVYDCIANNKHPIYEIKKLIVKNQLGEDKEMENEDWKRHIPDYKKRRKNNKQ 217
>gi|330040298|ref|XP_003239843.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
gi|327206768|gb|AEA38945.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
Length = 241
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 118/186 (63%), Gaps = 12/186 (6%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 79
G + +S + T+DP++I+KARD ++L++RSVP QA KI DD++ CDIIKI NK
Sbjct: 60 GFIEISNSLNTKDPFVIIKARDFVKLIARSVPVRQAAKIFDDQIFCDIIKISRSNCNKFN 119
Query: 80 FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
F+K+R++L+G +K +E++T CY+++QGNTV+ MG G+K VR IVE+ K+HP
Sbjct: 120 FLKKRKNLIGKKGIVVKIIEVITQCYLIIQGNTVSCMGQHLGIKYVRNIVENS-TFKIHP 178
Query: 140 VYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 199
+ +IK+L++K++L N+NW+++LP F K K P T QP+
Sbjct: 179 ILYIKMLIMKQKLYNILKFNNQNWEKYLPFFNTK-----------KLPSTSKILKNQPNT 227
Query: 200 IDKLLE 205
I+ L+
Sbjct: 228 INLFLQ 233
>gi|351712286|gb|EHB15205.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 219
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 130/198 (65%), Gaps = 17/198 (8%)
Query: 82 KRRQHLVGPNSSTLKALE-ILTGC--------YILVQGNTVAAMGSFKGLKQVRRIVEDC 132
KR +H+ ++TL +E +T C YI+++GNTV+A+G F GLK+VR++V D
Sbjct: 10 KRTEHI----NATLDLIEGSMTVCTSKKTFDPYIIIRGNTVSAIGPFSGLKEVRKVVLDT 65
Query: 133 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTP 190
M+N +HP+Y+IK LM+K+EL KD L +++W+RFL +FK KNV ++K K+ YTP
Sbjct: 66 MKN-IHPIYYIKTLMIKRELAKDSELRSQSWERFLSQFKHKNVNKRKEPKKKTVKKEYTP 124
Query: 191 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 250
FPPP S++DK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 125 FPPPQPESQVDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKP 184
Query: 251 RQNSCEAEDKTN-DVAAM 267
S EA +T DVA +
Sbjct: 185 VAKSKEASTETKIDVATI 202
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKA 39
++ L+L+EGSMTV T++KT DPYII++
Sbjct: 15 INATLDLIEGSMTVCTSKKTFDPYIIIRG 43
>gi|148689795|gb|EDL21742.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_a [Mus musculus]
Length = 198
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 114/164 (69%), Gaps = 4/164 (2%)
Query: 107 LVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRF 166
+VQGNTV+A+G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RF
Sbjct: 1 MVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERF 59
Query: 167 LPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 224
LP+FK KNV ++K K+ YTPFPPP S+IDK L SGEYFL +K+ +K +
Sbjct: 60 LPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAI 119
Query: 225 QEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 267
+ KQAE + + +R+ AFIPP+E EA +T DVAA+
Sbjct: 120 KAKQAEALTKRQEERNKAFIPPKEKPAVKPKEASTETKIDVAAI 163
>gi|440491940|gb|ELQ74542.1| rRNA processing protein [Trachipleistophora hominis]
Length = 246
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
+K LKE V ++N E + +STT KTRDPY+I+K++D I L+ + VP +A +I DD
Sbjct: 37 IKALLKEKNVRIKINYDERVVQMSTTSKTRDPYVIIKSKDFITLVCKGVPLQEAERIFDD 96
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ ++ I L NKE F+ RR L+GPN TLKALE+LT YIL++ V +GSF
Sbjct: 97 EISYAMLNIQQLASNKEVFINRRNRLIGPNGDTLKALEMLTKTYILMKSKCVCVIGSFAN 156
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+ +V + V M+N HPV+ +K L+ KKE+E+ + NW F+P KKK K+ K
Sbjct: 157 VLKVEQFVLKVMEN-YHPVHLLKQLVAKKEVEQCTEKKDMNWKNFVPVVKKKTGGSKQTK 215
Query: 182 SK----EKKPYTPFP 192
K E K + P
Sbjct: 216 RKFNVREGKLFMEMP 230
>gi|149066985|gb|EDM16718.1| rCG48818, isoform CRA_b [Rattus norvegicus]
Length = 198
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Query: 107 LVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRF 166
+VQGNTV+A+G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RF
Sbjct: 1 MVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERF 59
Query: 167 LPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 224
LP+FK KNV ++K K+ YTPFPPP S++DK L SGEYFL +K+ +K +
Sbjct: 60 LPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQVDKELASGEYFLKANQKKRQKMEAI 119
Query: 225 QEKQAEKTAENKRKRDAAFIPPEE 248
+ KQAE + + +R+ AFIPP+E
Sbjct: 120 KAKQAEALTKRQEERNKAFIPPKE 143
>gi|162606356|ref|XP_001713208.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
gi|12580674|emb|CAC26992.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
Length = 262
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 2/174 (1%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
++ +K + +N+ G + + + K DPY I+KA+D I L+ R VP QA KI
Sbjct: 48 IINRIMKIRSIVVTINVNLGLVEIMNSLKGFDPYSIIKAKDFITLVCRGVPIFQASKIFK 107
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 120
D++ C+IIKI +++ F+K+R+ L+G N T+K +E+LT CYIL+QGNTVA MG F+
Sbjct: 108 DDIFCEIIKISKFTSSRQSFLKKRKRLIGNNGVTVKTIELLTKCYILIQGNTVACMGKFR 167
Query: 121 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN 174
LK I+ M N HP++++K + +KK+L D +NWD++L F+KKN
Sbjct: 168 DLKWCINIITKSMTNN-HPIFYLKNIQIKKKLMNDEFFKTKNWDKYLL-FEKKN 219
>gi|402469222|gb|EJW04243.1| hypothetical protein EDEG_01475 [Edhazardia aedis USNM 41457]
Length = 331
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 107/174 (61%), Gaps = 3/174 (1%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ L E + E+N + + V TT KTRDPYII+K RD I L+SR +A KI +D
Sbjct: 42 IEELLTEKKLKLEVNYEDKILKVLTTNKTRDPYIIIKGRDFINLISRGAVFEEATKIFND 101
Query: 62 EMQCDIIKIGNLVR--NKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 119
+ C++I I L + NK F R+ L G N T+KAL++LT YI ++G ++ +G +
Sbjct: 102 NVFCEVINIKQLAKSSNKAVFQNRKHRLEGKNGDTIKALQLLTKTYITMEGKSLCVVGKY 161
Query: 120 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK 173
KG+ +V IVE QN+ HPVY +K L+ K+ELE D + +++W R LP+ + K
Sbjct: 162 KGINEVSDIVEKVFQNQ-HPVYLLKRLLAKRELENDKEIKDQDWTRLLPEVRSK 214
>gi|429966251|gb|ELA48248.1| hypothetical protein VCUG_00289 [Vavraia culicis 'floridensis']
Length = 246
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 114/195 (58%), Gaps = 5/195 (2%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
++ L+E + +++ E + VSTT KTRDPY+I+K++D + L+ + VP +A K+ DD
Sbjct: 37 MRTLLREKNIRIKMDRDERLIQVSTTSKTRDPYVILKSKDFVTLICKGVPLEEAQKVFDD 96
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
M I I L +KE F+ RR L+GPN TL AL++LT YILV+ +V +G F
Sbjct: 97 NMSYAWINIQALASDKEVFINRRNRLIGPNGDTLTALKMLTKTYILVKSKSVCVIGPFAS 156
Query: 122 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 181
+ QV + V M+N HPV+ +K +M KKE+E+ + NW F+P KKK KKVK
Sbjct: 157 VLQVEQFVLKVMEN-YHPVHLLKQMMAKKEVEQCADKKDMNWKNFVPVVKKKIGGSKKVK 215
Query: 182 ----SKEKKPYTPFP 192
+E K + P
Sbjct: 216 RQFNVREGKLFMDMP 230
>gi|194387246|dbj|BAG59987.1| unnamed protein product [Homo sapiens]
Length = 177
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 81/98 (82%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 60
+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVQILQ 137
Query: 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 98
D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLK
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKVF 175
>gi|429962930|gb|ELA42474.1| hypothetical protein VICG_00573 [Vittaforma corneae ATCC 50505]
Length = 289
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 121/201 (60%), Gaps = 11/201 (5%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 70
V E++ + +M VSTT +TRDPYII+KA ++I+LL R V A+K+L+D + ++++
Sbjct: 64 VHFEVDYDKFTMRVSTTDRTRDPYIIIKAYEMIQLLGRGVTLENAVKVLEDGIASEVLQA 123
Query: 71 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
L ++ F +RRQ L P L+++E++T ++L+ TV +G +KG+ + + I+
Sbjct: 124 RMLCSTEKIFERRRQRLSNPK--ILQSIELITKTHVLISNKTVCIVGEYKGVHEAKNIII 181
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYT- 189
C +N +HP + +K L++KK+L KD A +W+RFLP N+K+ K K+ + T
Sbjct: 182 KCFEN-IHPAFELKRLIIKKKLMKDNAEG--DWERFLP-----NIKKTHSKKKKTRRETG 233
Query: 190 PFPPPPQPSKIDKLLESGEYF 210
P K D +++GEYF
Sbjct: 234 SMPEEIHERKEDLQMQTGEYF 254
>gi|294951882|ref|XP_002787157.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
gi|239901838|gb|EER18953.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 93/135 (68%), Gaps = 4/135 (2%)
Query: 116 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 175
MG+ K LKQVRRIVEDC N +HPVYH+K LM+KKELEK+ L +ENWDRFLP FK +NV
Sbjct: 1 MGTHKALKQVRRIVEDCFHN-VHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNV 59
Query: 176 KQKKVKSKEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 234
++KK K KK FPP P K D +E+GEYFLS+ +K S + +K+E Q + + +
Sbjct: 60 QRKKQKKIAKKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQVSEQ 119
Query: 235 NKRKRDAAFI--PPE 247
KR+R+ + PPE
Sbjct: 120 RKREREEMYSQPPPE 134
>gi|149478667|ref|XP_001516023.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 179
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 92/126 (73%), Gaps = 3/126 (2%)
Query: 125 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV--KS 182
VR++V D M+N +HP+Y+IK LM+K+EL KD L +NW+RFLPKFK KN+ ++K K
Sbjct: 1 VRKVVLDTMKN-IHPIYNIKTLMIKRELSKDSELRTQNWERFLPKFKHKNLNKRKEPNKK 59
Query: 183 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 242
K KK YTPFPPP S+IDK L SGEYFL +K+ +K +E + KQAE ++ + +R+ A
Sbjct: 60 KVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEEIKAKQAEVLSKRQAERNKA 119
Query: 243 FIPPEE 248
FIPP+E
Sbjct: 120 FIPPKE 125
>gi|269860430|ref|XP_002649936.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
gi|220066623|gb|EED44098.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
Length = 220
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 70
++ E+N +M V T + TRDPYII+KA++L+ L+S+ V I +L+D + +II I
Sbjct: 51 LTFEINWNTNTMFVRTNKMTRDPYIIIKAQELLELISKGVLLENCINLLEDGVFSEIIYI 110
Query: 71 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
L RN + RR L P LKALEIL+ I V TV +G G+ VR +V
Sbjct: 111 NVLTRNPTVYENRRNRLSNP--KVLKALEILSKTKITVGTKTVCVVGDHDGIDVVRNVVL 168
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 168
+N +HP Y IK LM+K +L KD +WDRFLP
Sbjct: 169 KAFKN-IHPAYEIKALMIKHKLSKDN--IEGDWDRFLP 203
>gi|342181643|emb|CCC91123.1| putative ribosomal RNA assembly protein [Trypanosoma congolense
IL3000]
Length = 177
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 74/121 (61%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 61
V+ LK++ ++ +L+L+EGSMTV+TTR+T DPY IVKARD IRLL+R+VP QA KI
Sbjct: 50 VEMVLKQHQLTGKLDLMEGSMTVATTRRTWDPYSIVKARDFIRLLARNVPLAQAQKIFQT 109
Query: 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 121
E+ CDII I ++ RFVKRR LVGP S K G G GS K
Sbjct: 110 EITCDIIPISLKGKSTRRFVKRRDRLVGPQGSDTKGTGNTHGLLRSCAGENSCGYGSCKR 169
Query: 122 L 122
L
Sbjct: 170 L 170
>gi|356532666|ref|XP_003534892.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA assembly protein
KRR1-like [Glycine max]
Length = 269
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 45/48 (93%)
Query: 97 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIK 144
ALEILTGC+ILVQGNT+A MGSF GLKQVRRIVE+CM NKMHPVY+IK
Sbjct: 16 ALEILTGCFILVQGNTIAVMGSFIGLKQVRRIVEECMMNKMHPVYNIK 63
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 199 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 258
+ID LE+GEYFLS ++K QEKQEKQAEKTAE KRKR+ AFIPP+EP+ ++E
Sbjct: 161 QIDIQLETGEYFLSNKRK----XQEKQEKQAEKTAEXKRKREEAFIPPKEPANLVD-KSE 215
Query: 259 DKTNDVAAMAKSLK--EKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK 307
D ++VA MA SLK ++ KK K+K E IN E YI S E+ S KK K
Sbjct: 216 DANSNVADMAMSLKVNKQTKKFGKRKSEEIINAETYIIGSSEQASGKKSKK 266
>gi|335775908|gb|AEH58729.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 159
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 146 LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKL 203
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+IDK
Sbjct: 1 LMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKE 60
Query: 204 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN- 262
L SGEYFL +K+ +K + + KQAE ++ + +R AFIPP+E EA +T
Sbjct: 61 LASGEYFLKASQKKRQKMEAVKAKQAEALSKRQEERKKAFIPPKEKPVVKPKEASTETKI 120
Query: 263 DVAAM 267
DVAA+
Sbjct: 121 DVAAI 125
>gi|443926900|gb|ELU45449.1| hypothetical protein AG1IA_00511 [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 36/138 (26%)
Query: 147 MVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKEKKP----------------- 187
MVK+EL KDP LA E+WDRFLP+F+K+++ QK K +E++
Sbjct: 1 MVKRELAKDPKLATESWDRFLPQFRKRHLTSAQKSAKKRERQEGATNANATPLGDGSAPA 60
Query: 188 -----------------YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 230
YTPFPP P K+D LESGEYFL + KE+++ +++ KQAE
Sbjct: 61 PASAPATEKKEKPKKKVYTPFPPAQLPRKVDLELESGEYFLKAKDKEAREEAKRKAKQAE 120
Query: 231 KTAENKRKRDAAFIPPEE 248
TAE K++R+ ++ P E
Sbjct: 121 ATAERKKEREEVYVAPAE 138
>gi|429329210|gb|AFZ80969.1| hypothetical protein BEWA_003770 [Babesia equi]
Length = 84
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 5/71 (7%)
Query: 89 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMV 148
GP STLKALE+LT CYIL QG TV S KG+K RRIVEDCM+N +HPVYHIK M+
Sbjct: 18 GPGGSTLKALELLTECYILTQGQTV----SIKGIKVARRIVEDCMKN-VHPVYHIKEFMI 72
Query: 149 KKELEKDPALA 159
K++L + ++
Sbjct: 73 KRDLHAEMVIS 83
>gi|432096557|gb|ELK27204.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 183
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 29/132 (21%)
Query: 139 PVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQ 196
P H K LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPF PPPQ
Sbjct: 43 PTVHFKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPF-PPPQ 101
Query: 197 PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCE 256
P E Q KQAE ++ + +R+ AFIPP+E E
Sbjct: 102 P-------------------------ESQAKQAEALSKRQEERNKAFIPPKEKPVLKPKE 136
Query: 257 AEDKTN-DVAAM 267
A +T DVAA+
Sbjct: 137 ASTETKIDVAAI 148
>gi|345310359|ref|XP_001517030.2| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 207
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 45/54 (83%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 54
+V+ AL+E+ V L+L+EGSMTV TT+KT DPY+I++ARDLI+LL+RSVP Q
Sbjct: 154 LVQKALQEHHVKATLDLIEGSMTVCTTKKTFDPYVIIRARDLIKLLARSVPFEQ 207
>gi|374636257|ref|ZP_09707834.1| KH domain protein [Methanotorris formicicus Mc-S-70]
gi|373559594|gb|EHP85885.1| KH domain protein [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 8 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 67
E GV E++ +G +T+ +T K +D KARD++R + R A+K+L DE +I
Sbjct: 41 ELGVELEIS-EDGDVTIYSTEKQKDALATWKARDIVRAIGRGFSPENALKLLSDEYVLEI 99
Query: 68 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
I I ++ + + ++G + K +E LTG + V G TVA +G F ++ +
Sbjct: 100 IDITEYASSENALRRLKGRVIGSGGKSRKYIEDLTGARVSVFGKTVAILGEFDSVQVAKE 159
Query: 128 IVEDCMQNKMHP 139
VE ++ H
Sbjct: 160 AVEMILKGSSHA 171
>gi|47187716|emb|CAF94757.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 14/103 (13%)
Query: 146 LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLE 205
LM+K+EL KDP L +++W+RFLPKF+ KN+ +++ P+ +D+ L
Sbjct: 3 LMIKRELAKDPELRSQSWERFLPKFRHKNLAKRR--------------EPKKKAVDQELA 48
Query: 206 SGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 248
+GE+FL E K+ KK + + KQAE + K R+ FIPP+E
Sbjct: 49 TGEFFLRESVKKRKKMEAIKVKQAEVLIKKKEARNKHFIPPKE 91
>gi|15668619|ref|NP_247417.1| putative RNA-processing protein [Methanocaldococcus jannaschii DSM
2661]
gi|2495988|sp|Q57885.1|Y443_METJA RecName: Full=KH domain-containing protein MJ0443
gi|1591147|gb|AAB98430.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 227
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 7 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
KE GV E++ +G++T+ T K +DP + KARD++R + R A+K++ DE +
Sbjct: 42 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVSDEYVLE 100
Query: 67 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 126
+I I + + + + ++G + + +E LTG + V GNTVA +G + ++ +
Sbjct: 101 VIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK 160
Query: 127 RIVEDCMQNKMHP 139
VE ++ H
Sbjct: 161 EAVEMLLRGASHA 173
>gi|289193176|ref|YP_003459117.1| KH domain protein [Methanocaldococcus sp. FS406-22]
gi|288939626|gb|ADC70381.1| KH domain protein [Methanocaldococcus sp. FS406-22]
Length = 218
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 7 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
KE GV E++ +G++T+ T K +DP + KA+D++R + R A+K++ DE +
Sbjct: 38 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKAKDIVRAIGRGFNPEIALKLVSDEYVLE 96
Query: 67 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 126
+I I + ++ + + ++G + + +E LTG + V GNTVA +G + ++ +
Sbjct: 97 VIDIEDYASSENSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK 156
Query: 127 RIVEDCMQNKMHP 139
VE ++ H
Sbjct: 157 EAVEMLLRGASHA 169
>gi|256810935|ref|YP_003128304.1| putative RNA-processing protein [Methanocaldococcus fervens AG86]
gi|256794135|gb|ACV24804.1| KH domain protein [Methanocaldococcus fervens AG86]
Length = 216
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 7 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
KE GV E++ +G++T+ T K +DP + KA+D++R + R A++++ DE +
Sbjct: 38 KELGVKLEIDE-DGTVTIYGTEKQKDPLAVWKAKDIVRAIGRGFNPEIALRLVSDEYVLE 96
Query: 67 IIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
+I I + N E VKR + ++G + + +E LTG + V GNTVA +G + ++
Sbjct: 97 VIDIEDYA-NSENAVKRLKGRVIGKEGKSRRYIEELTGANVSVYGNTVAIVGEHEPVQVA 155
Query: 126 RRIVEDCMQNKMHP 139
+ VE ++ H
Sbjct: 156 KEAVEMLLRGASHA 169
>gi|47180661|emb|CAG14635.1| unnamed protein product [Tetraodon nigroviridis]
Length = 109
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 59
+V+ AL + + L+L+EGS+TV TTRKT DPY I++ARDL++L++RSVP Q I L
Sbjct: 50 LVEKALSDVHIKASLDLIEGSVTVCTTRKTFDPYAIIRARDLVKLIARSVPFEQVIIAL 108
>gi|333911635|ref|YP_004485368.1| KH domain-containing protein [Methanotorris igneus Kol 5]
gi|333752224|gb|AEF97303.1| KH domain protein [Methanotorris igneus Kol 5]
Length = 194
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 7 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
+E GV E++ +G +T+ +T K +D KARD++ + R A+K+L DE +
Sbjct: 40 RELGVELEISK-DGDVTIYSTEKQKDALATWKARDIVMAIGRGFSPENALKLLSDEYVLE 98
Query: 67 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 126
II I ++ + + ++G + K +E LTG + V G TVA +G F+ ++ +
Sbjct: 99 IIDITEYASSENALRRLKGRVIGSGGKSRKYIEDLTGARVSVFGKTVAILGEFESVQIAK 158
Query: 127 RIVEDCMQNKMHP 139
VE ++ H
Sbjct: 159 EAVEMILRGSSHA 171
>gi|312136521|ref|YP_004003858.1| kh domain-containing protein [Methanothermus fervidus DSM 2088]
gi|311224240|gb|ADP77096.1| KH domain protein [Methanothermus fervidus DSM 2088]
Length = 188
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G +T+ ++ DP ++KARD++R + R A+++L++++ D+I I +
Sbjct: 36 LEIDSESGMVTIIPKSESIDPMYVLKARDIVRAIGRGFSPEVALRLLNEDVMLDVIDISD 95
Query: 73 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 131
V R+K+ +++ ++G + T + +E +TG I V G TVA +G + ++ R VE
Sbjct: 96 YVGRSKKAIRRQKGRIIGKDGKTRQIIENMTGANISVYGKTVALIGDLEEIRIAREAVEM 155
Query: 132 CMQNKMHPVYH 142
++ H +
Sbjct: 156 LLEGAKHGTVY 166
>gi|448704680|ref|ZP_21700681.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
gi|445796078|gb|EMA46591.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
Length = 185
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R P +A+++LDDEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFPPEEALRLLDDEMMMFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G + T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDLQRQKGRLIGEDGRTRELMEELTGASVVIYGSTLGIIGAPEEVDAVRTAA 147
Query: 130 EDCMQNKMH 138
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|448304025|ref|ZP_21493970.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445592112|gb|ELY46304.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 185
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +KA D++R + R P A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVDTVG---DPVLGLKAPDIVRAIGRGFPPEAALQLLEDEMMMFDLVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 INAAARNKNDLKRKKGRLIGEGGRTRELMEELTGAEVVIYGSTLGTIGTPQQVDIVRTAA 147
Query: 130 EDCMQNKMHPVYH 142
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|297618876|ref|YP_003706981.1| KH domain-containing protein [Methanococcus voltae A3]
gi|297377853|gb|ADI36008.1| KH domain protein [Methanococcus voltae A3]
Length = 186
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%)
Query: 26 TTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQ 85
+T K D + KARD+++ + R +A+K+L D C+II I +++ ++ +
Sbjct: 51 STDKQVDALSLWKARDIVKAIGRGFSPEKALKLLSDSYMCEIIDISEYANSEKALLRLKG 110
Query: 86 HLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
++G + + +E LTG YI V G TV+ +G F+ ++ + +E ++ H
Sbjct: 111 RIIGSGGKSRRYVEELTGTYISVYGKTVSILGEFEQVQISKDAIEMILKGTSHA 164
>gi|448315617|ref|ZP_21505258.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
gi|445610989|gb|ELY64752.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
Length = 185
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 69
V +++ GS+ V T DP +K +++R + R P +A+++L DD MQ D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G + T + +E L+G +++ G+T+ A+G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIGTPQQVDAVRTAA 147
Query: 130 EDCMQNKMH 138
E ++ H
Sbjct: 148 EMLLEGAPH 156
>gi|435849099|ref|YP_007311349.1| KH domain protein [Natronococcus occultus SP4]
gi|433675367|gb|AGB39559.1| KH domain protein [Natronococcus occultus SP4]
Length = 185
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIK 69
V +++ GS+ V + DP +K +++R + R P +A+++LDD+M Q D++
Sbjct: 31 VRLDIDSENGSVAVESVG---DPVSGLKGPEIVRAIGRGFPPEEALQLLDDDMMQFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G + T + +E L+G +++ G+T+ A+G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIGTPQQVDAVRTAA 147
Query: 130 EDCMQNKMH 138
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|399576154|ref|ZP_10769911.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
gi|399238865|gb|EJN59792.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
Length = 206
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ + + DP + A D++R + R A+ +LD++M+ D+I
Sbjct: 54 VRLDIDSESGSVAIDSVG---DPVTGLAAPDIVRAIGRGFKPEVALSLLDNDMRMFDLID 110
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
IG RNK +++ L+G N T + +E L+G ++++ G+T+ +G + ++ VRR V
Sbjct: 111 IGEATRNKNDMKRQKGRLIGENGRTRQLMEELSGAHVVIYGSTLGIIGQPEEVETVRRAV 170
Query: 130 EDCMQNKMHPVYHIKILMVKKELEKDPALANENWD 164
+ H + + EL + L+ D
Sbjct: 171 GMILDGAPHGAVYSYLERKHNELSRGAQLSGSTED 205
>gi|448320958|ref|ZP_21510441.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
gi|445604851|gb|ELY58792.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
Length = 185
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 69
V +++ GS+ V T DP +K +++R + R P +A+++L DD MQ DI+
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQLDIVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G + T + +E L+G +++ G+T+ A+G+ + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIGTPPEVDAVRTAA 147
Query: 130 EDCMQNKMH 138
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|26347389|dbj|BAC37343.1| unnamed protein product [Mus musculus]
Length = 131
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 188 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 247
YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+
Sbjct: 16 YTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPK 75
Query: 248 EPSRQNSCEAEDKTN-DVAAM 267
E EA +T DVAA+
Sbjct: 76 EKPAVKPKEASTETKIDVAAI 96
>gi|448727052|ref|ZP_21709429.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
gi|445792252|gb|EMA42863.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
Length = 182
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DII 68
GV +++ GS+ + + DP +K D++R + R A+ +LDDEM ++I
Sbjct: 30 GVRLDIDSETGSVGIESVE---DPVQGLKGPDIVRAIGRGFAPEDALTLLDDEMMLLELI 86
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
I RN+ +++ L+G N T + + L+G ++++ G+TV A+G+ + ++ VR
Sbjct: 87 DIEAATRNETDLTRKKGRLIGENGRTRELMAELSGAFVVIYGSTVGAIGTPEEIEVVRNA 146
Query: 129 VEDCMQNKMH 138
VE + H
Sbjct: 147 VEMILDGAPH 156
>gi|304315141|ref|YP_003850288.1| RNA-binding protein [Methanothermobacter marburgensis str. Marburg]
gi|302588600|gb|ADL58975.1| predicted RNA-binding protein [Methanothermobacter marburgensis
str. Marburg]
Length = 188
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G++T+ + DP KAR+++R + R A+++LDD++ DIIKI +
Sbjct: 36 LEIDSETGAVTLIPHDELDDPLSPWKARNIVRAIGRGFNPEVALRLLDDDVALDIIKITD 95
Query: 73 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 131
V ++K+ +++ ++G T + + +TG I V G TVA +G F+ L R VE
Sbjct: 96 YVGKSKKAIARQKGRVIGRGGITRRIIHDMTGVDISVYGKTVALIGEFEKLSVAREAVEM 155
Query: 132 CMQNKMH 138
+ H
Sbjct: 156 ILNGARH 162
>gi|150400216|ref|YP_001323983.1| putative RNA-processing protein [Methanococcus vannielii SB]
gi|150012919|gb|ABR55371.1| KH type 1 domain protein [Methanococcus vannielii SB]
Length = 184
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 8 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 67
+ GV E++ EG +T+ +T + +D + KARD+++ + R +A+K+L DE +
Sbjct: 32 DLGVELEID-SEGEVTIYSTEEQKDALALWKARDIVKAVGRGFSPEKALKLLSDEHSFET 90
Query: 68 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
I I + + + + ++G + + + +E LTG ++ V G TV+ +G + ++ +
Sbjct: 91 IDITEYASSDKALQRLKGRIIGSSGKSRRYIEELTGTHVSVYGKTVSILGEIEPVQIAKD 150
Query: 128 IVEDCMQNKMHP 139
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|433637168|ref|YP_007282928.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|448376349|ref|ZP_21559558.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
gi|433288972|gb|AGB14795.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|445657274|gb|ELZ10103.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
Length = 189
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIK 69
V +++ GS+ V T DP + +K D++R + R A+ +LDDE M DI+
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPDIVRAIGRGFAPEDALALLDDELMMFDIVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RN +++ L+G N T + +E L+G +++ G+T+A +G+ + + VR
Sbjct: 88 IDTASRNANDMKRQKGRLIGENGRTRELMEELSGASVVIYGSTLAIIGTPEQVDVVRTAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|150403542|ref|YP_001330836.1| putative RNA-processing protein [Methanococcus maripaludis C7]
gi|159904678|ref|YP_001548340.1| putative RNA-processing protein [Methanococcus maripaludis C6]
gi|150034572|gb|ABR66685.1| KH type 1 domain protein [Methanococcus maripaludis C7]
gi|159886171|gb|ABX01108.1| KH type 1 domain protein [Methanococcus maripaludis C6]
Length = 184
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 8 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 67
E GV E++ EG +++ +T DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 ELGVELEID-SEGEVSIYSTEDQEDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 68 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
I I + + + + ++G + + +E LT +I V G TV+ +G + K +
Sbjct: 91 IDISEYGNSDKALQRLKGRIIGSGGKSRRYIEELTSTHISVYGKTVSIIGEIETAKIAKD 150
Query: 128 IVEDCMQNKMHP 139
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|408381805|ref|ZP_11179353.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
gi|407815736|gb|EKF86306.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
Length = 191
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ GS+ +S +DP + KAR +++ + R A+K++DD++ +II + +
Sbjct: 36 IEVDSEAGSIAISPQEDAKDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLPD 95
Query: 73 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 131
V ++K+ ++++ ++G + T + +TG Y+ + G TV+ +G + L+ + VE
Sbjct: 96 YVGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYVSIYGKTVSIIGEMEHLQIAKEAVEM 155
Query: 132 CMQNKMH 138
+ H
Sbjct: 156 ILDGARH 162
>gi|257076599|ref|ZP_05570960.1| putative RNA-processing protein [Ferroplasma acidarmanus fer1]
Length = 185
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 24 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKERFVK 82
+ T + DP + A ++++ ++R +A+ + DD +Q +I I V ++ +R +
Sbjct: 44 IVTVYQKNDPLKALMALNVVQAIARGFNPEKAMLLFDDSVQLIVISIKEFVNKDAKRIKE 103
Query: 83 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
R L+G T + +E LTG YI + GNTV+ +G F ++ R V +Q + H VY
Sbjct: 104 IRGRLIGKEGHTREIIEELTGTYISISGNTVSILGDFISIQYAREAVNMILQGRKHKTVY 163
>gi|410720327|ref|ZP_11359683.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
gi|410601109|gb|EKQ55629.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
Length = 191
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 12 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 71
S +++ GS+ +S DP + KAR +++ + R A+K++DD++ +II +
Sbjct: 35 SIDVDSEAGSIAISPQEDAEDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLP 94
Query: 72 NLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+ V ++K+ ++++ ++G + T + +TG Y+ + G TV+ +G + L+ + VE
Sbjct: 95 DYVGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYVSIYGKTVSIIGEMEHLQIAKEAVE 154
Query: 131 DCMQNKMH 138
+ H
Sbjct: 155 MILDGARH 162
>gi|448406892|ref|ZP_21573324.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
gi|445676698|gb|ELZ29215.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
Length = 182
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHL 87
+T DP +K D+++ + R +A+++LDDEM DII I RN+ + + L
Sbjct: 46 QTGDPLTALKGPDIVKAIGRGFAPEEAMRLLDDEMMMFDIIDIDAAARNRNDLQRHKGRL 105
Query: 88 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
+G + T + +E L+G +++ G+T+ +G + + VR E ++ H VY
Sbjct: 106 IGEDGRTRELMEELSGASVVIYGSTLGIIGGPEQVDTVREAAEMIIEGAPHGTVY 160
>gi|18977952|ref|NP_579309.1| RNA-processing protein [Pyrococcus furiosus DSM 3638]
gi|397652073|ref|YP_006492654.1| RNA-processing protein [Pyrococcus furiosus COM1]
gi|18893724|gb|AAL81704.1| hypothetical protein PF1580 [Pyrococcus furiosus DSM 3638]
gi|393189664|gb|AFN04362.1| RNA-processing protein [Pyrococcus furiosus COM1]
Length = 221
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + +++T++T DP + KARD++ + R +A ++L++ +II + +
Sbjct: 69 IEVDSETGEVWITSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTD 128
Query: 73 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
++ E+ + R ++G T + +E ++G I V G TVA +G+ ++ R +E
Sbjct: 129 IIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASISVYGKTVAIIGNPIQIEIARTAIE 188
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANEN 162
+ H + + KK+LE + ++ EN
Sbjct: 189 KLARGSPHGTVYRYLERRKKDLELEGSMYYEN 220
>gi|261402309|ref|YP_003246533.1| putative RNA-processing protein [Methanocaldococcus vulcanius M7]
gi|261369302|gb|ACX72051.1| KH domain protein [Methanocaldococcus vulcanius M7]
Length = 216
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 3 KGALK-----EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 57
KG++K E GV E++ +G++T+ T K +D + KA+D++R + R A++
Sbjct: 29 KGSVKKAIEEELGVKLEID-EDGTVTIYGTDKQKDQLAVWKAKDIVRAIGRGFNPEIALR 87
Query: 58 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 117
++ D+ +II I + ++ + + ++G + + +E LTG + V G TVA +G
Sbjct: 88 LVSDDYVLEIIDIEDYASSENSLRRLKGRVIGKEGKSRRYIEGLTGANVSVYGKTVAIVG 147
Query: 118 SFKGLKQVRRIVEDCMQNKMHP 139
+ ++ + VE ++ H
Sbjct: 148 EHEPVQVAKEAVEMLLRGASHA 169
>gi|134046036|ref|YP_001097522.1| putative RNA-processing protein [Methanococcus maripaludis C5]
gi|132663661|gb|ABO35307.1| KH, type 1, domain protein [Methanococcus maripaludis C5]
Length = 184
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 8 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 67
E GV E++ EG + + +T DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 ELGVELEID-SEGEVNIYSTEGQEDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 68 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
I I + + + + ++G + + + +E LT +I V G TV+ +G + K +
Sbjct: 91 IDISEYGNSDKALQRLKGRIIGSSGKSRRYIEELTSTHISVYGKTVSIIGEIETAKIAKD 150
Query: 128 IVEDCMQNKMHP 139
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|448337651|ref|ZP_21526726.1| RNA-processing protein [Natrinema pallidum DSM 3751]
gi|445625228|gb|ELY78594.1| RNA-processing protein [Natrinema pallidum DSM 3751]
Length = 185
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ A+G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGAIGAPQEVDAVRTAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448457874|ref|ZP_21595879.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
gi|445810175|gb|EMA60206.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
Length = 180
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP ++ A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAVMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRQKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|354609668|ref|ZP_09027624.1| KH domain protein [Halobacterium sp. DL1]
gi|353194488|gb|EHB59990.1| KH domain protein [Halobacterium sp. DL1]
Length = 183
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ +GS+ + + DP +KA +++R + R +A+ +LDDEM+ D I
Sbjct: 31 VELDVDSQDGSVAIE---RVGDPVRGMKAPEIVRAIGRGFKPDEALSLLDDEMRMFDTID 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 117
IG RN +++ L+G N T + +E LTG +++ G+T +G
Sbjct: 88 IGRAARNDNDLRRKKGRLIGENGRTRELMEELTGANVVIYGSTFGVIG 135
>gi|45358168|ref|NP_987725.1| RNA-processing protein [Methanococcus maripaludis S2]
gi|340623859|ref|YP_004742312.1| putative RNA-processing protein [Methanococcus maripaludis X1]
gi|44920925|emb|CAF30161.1| Conserved Hypothetical protein [Methanococcus maripaludis S2]
gi|339904127|gb|AEK19569.1| putative RNA-processing protein [Methanococcus maripaludis X1]
Length = 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 8 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 67
+ GV E++ EG + + +T + +DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 DLGVELEID-SEGEVNIYSTDEQKDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 68 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
I I + + + + ++G + + + +E LT +I V G TV+ +G + K +
Sbjct: 91 IDISEYGNSDKAIQRLKGRIIGSSGKSRRYVEELTSTHISVYGKTVSIIGEIETAKIAKD 150
Query: 128 IVEDCMQNKMHP 139
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|397617920|gb|EJK64671.1| hypothetical protein THAOC_14573, partial [Thalassiosira oceanica]
Length = 126
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 32/40 (80%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 40
+V L +Y ++CELNLVEGSMTV TT KT DPYII+KAR
Sbjct: 87 LVTRTLDKYKIACELNLVEGSMTVRTTLKTSDPYIILKAR 126
>gi|257386765|ref|YP_003176538.1| KH type 1 domain-containing protein [Halomicrobium mukohataei DSM
12286]
gi|257169072|gb|ACV46831.1| KH type 1 domain protein [Halomicrobium mukohataei DSM 12286]
Length = 182
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V + DP +K D+++ + R A+ +LDDEM D++
Sbjct: 31 VRLDIDSESGSVGVESVG---DPITGLKGPDIVKAIGRGFNPEDALALLDDEMMMFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RN+ F +++ L+G T + +E LTG +++ G+T+ +G + + VR
Sbjct: 88 IDAASRNQNDFTRQKGRLIGEGGRTRELMEELTGASVVIYGSTLGIIGGPEQVDAVREAA 147
Query: 130 EDCMQNKMH-PVY 141
E ++ H VY
Sbjct: 148 EMLLEGAPHGSVY 160
>gi|332157797|ref|YP_004423076.1| putative RNA-processing protein [Pyrococcus sp. NA2]
gi|331033260|gb|AEC51072.1| putative RNA-processing protein [Pyrococcus sp. NA2]
Length = 220
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 79
G + +++T++T+DP + KARD++ + R +A ++L++ +II + +++ E+
Sbjct: 75 GEVWITSTKETKDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 134
Query: 80 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
+ R ++G T + +E ++G + V G TVA +G+ ++ + +E +
Sbjct: 135 NALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 194
Query: 138 HPVYHIKILMVKKELEKDPALANEN 162
H + + KK+LE + ++ EN
Sbjct: 195 HGSVYRYLERRKKDLELEGSMYYEN 219
>gi|448312672|ref|ZP_21502412.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
gi|445600868|gb|ELY54868.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
Length = 185
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP +KA D++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVSGLKAPDIVRAIGRGFAPDAALRLLEDEMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RN +++ L+G + T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEDGRTRELMEELTGADVVIYGSTLGVIGAPQEVDAVRTAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|337283842|ref|YP_004623316.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
gi|334899776|gb|AEH24044.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
Length = 220
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + +++T++T DP + KARD++ + R +A ++L++ +II + +
Sbjct: 68 IEVDSETGEVWITSTKETNDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTD 127
Query: 73 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
++ E+ + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 128 MIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIE 187
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANEN 162
+ H + + KK+LE + A+ EN
Sbjct: 188 KLARGAPHGTVYRYLERRKKDLELEGAMYYEN 219
>gi|432108524|gb|ELK33238.1| Calcyphosin-2 [Myotis davidii]
Length = 666
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 49
V+ L+L+EGSMTV TT+KT DPYII++ RDLI+LL+R+
Sbjct: 30 VNATLDLIEGSMTVCTTKKTFDPYIIIRIRDLIKLLART 68
>gi|448475910|ref|ZP_21603265.1| RNA-processing protein [Halorubrum aidingense JCM 13560]
gi|445816128|gb|EMA66037.1| RNA-processing protein [Halorubrum aidingense JCM 13560]
Length = 180
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTFDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|448441692|ref|ZP_21589299.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|448462610|ref|ZP_21597809.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
gi|445688728|gb|ELZ40979.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|445818174|gb|EMA68037.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
Length = 180
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAALVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|432329120|ref|YP_007247264.1| universal archaeal KH domain protein [Aciduliprofundum sp.
MAR08-339]
gi|432135829|gb|AGB05098.1| universal archaeal KH domain protein [Aciduliprofundum sp.
MAR08-339]
Length = 182
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 69
GV E++ EG + + + + DP + +K RD + + R +A +I ++++ ++I
Sbjct: 30 GVKMEIDSREGDVVIDES--SGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVID 87
Query: 70 IGNLVRNKE-RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
I +E R R ++G N T + +E L+G + + G +VA +GS+ ++ +
Sbjct: 88 IKEFAGKRESRIRVLRGRIIGKNGKTRRIIEELSGASLSIYGYSVAIIGSYTQIETAKHA 147
Query: 129 VEDCMQNKMHP-VYH 142
VE ++ H +YH
Sbjct: 148 VEMLLRGSKHATIYH 162
>gi|389852869|ref|YP_006355103.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
gi|388250175|gb|AFK23028.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
Length = 221
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + +++TR+T DP + KARD++ + R +A ++L++ +I+ + +
Sbjct: 69 IEVDSETGEVWITSTRETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIVNLTD 128
Query: 73 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
++ E+ + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 129 IIIGDEKKALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIE 188
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANEN 162
+ H + + KK+LE + ++ EN
Sbjct: 189 KLARGSPHGTVYRYLERRKKDLELEGSMYYEN 220
>gi|15679024|ref|NP_276141.1| RNA-processing protein [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2622107|gb|AAB85502.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 191
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G++T+ + DP KAR ++R + R A+++LDD++ ++IKI +
Sbjct: 39 LEIDSETGAVTLIPQDELEDPLSPWKARHIVRAIGRGFNPEVALRLLDDDVALEVIKITD 98
Query: 73 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 131
V ++K+ +++ ++G T + + +TG I V G TV+ +G F+ L R +E
Sbjct: 99 YVGKSKKAIARQKGRVIGREGITRRIIHDMTGVDISVYGKTVSLIGEFEKLAVAREAIEM 158
Query: 132 CMQNKMH-PVY 141
+ H VY
Sbjct: 159 ILNGARHKSVY 169
>gi|448494891|ref|ZP_21609706.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
gi|445689114|gb|ELZ41360.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
Length = 180
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|254167589|ref|ZP_04874440.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197623398|gb|EDY35962.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 181
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 69
GV ++N +G + + + + DP + +K RD + + R +A +I ++++ ++I
Sbjct: 29 GVKMDINSNDGDVVIDES--SGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVID 86
Query: 70 IGNLVRNKERFVK-RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
I +E ++ R ++G N T + +E ++G I V G TVA +G + ++ ++
Sbjct: 87 IKEFTGKRENRIRVLRGRIIGKNGKTRRIIEEMSGASISVYGYTVAIIGDYTQMEIAKKA 146
Query: 129 VEDCMQNKMHP-VYHI 143
VE ++ H +YH
Sbjct: 147 VEMLLRGSKHATIYHF 162
>gi|14591347|ref|NP_143425.1| RNA-processing protein [Pyrococcus horikoshii OT3]
gi|159794750|pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
gi|294979443|pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
gi|3257995|dbj|BAA30678.1| 219aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 219
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 79
G + +++T++T DP + KARD++ + R +A ++L++ +II + +++ E+
Sbjct: 74 GEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 133
Query: 80 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
+ R ++G T + +E ++G + V G TVA +G+ ++ + +E +
Sbjct: 134 NALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 193
Query: 138 HPVYHIKILMVKKELEKDPALANEN 162
H + + KK+LE + A+ EN
Sbjct: 194 HGSVYRYLERRKKDLELEGAMYYEN 218
>gi|448401055|ref|ZP_21571461.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
gi|445666868|gb|ELZ19524.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
Length = 185
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K D++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPDIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGAPQEVDAVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448622363|ref|ZP_21669057.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
gi|445754445|gb|EMA05850.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
Length = 180
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGAEVVIYGSTLGIIGQPEEVEAVRRAVEMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|289596955|ref|YP_003483651.1| KH domain protein [Aciduliprofundum boonei T469]
gi|289534742|gb|ADD09089.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 182
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 69
GV ++N +G + + + + DP + +K RD + + R +A +I ++++ ++I
Sbjct: 30 GVKMDINSNDGDVVIDES--SGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVID 87
Query: 70 IGNLVRNKERFVK-RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
I +E ++ R ++G N T + +E ++G I V G TVA +G + ++ ++
Sbjct: 88 IKEFTGKRENRIRVLRGRIIGKNGKTRRIIEEMSGASISVYGYTVAIIGDYTQMEIAKKA 147
Query: 129 VEDCMQNKMHP-VYHI 143
VE ++ H +YH
Sbjct: 148 VEMLLRGSKHATIYHF 163
>gi|448606648|ref|ZP_21659074.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445738856|gb|ELZ90368.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 180
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGAEVVIYGSTLGIIGKPEEVEAVRRAVEMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|448732133|ref|ZP_21714415.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
gi|445805045|gb|EMA55272.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
Length = 182
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + +K +++ + R A+ +LDDEM D++ + RNK +++ L+G
Sbjct: 49 DPVLGLKGPEIVEAIGRGFAPEDALVLLDDEMMMFDLVDVDAATRNKNDLERKKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
N T + + LTG +++ G TV A+G+ + ++ VR VE + H VY
Sbjct: 109 NGRTRELMVELTGAEVVIYGTTVGAIGTPQQVEAVRSAVEMLLDGAPHGAVY 160
>gi|351700923|gb|EHB03842.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 179
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 49
++ L L+EGSMTV TT+KT DPYII++ARDLI+LL S
Sbjct: 15 LNATLGLIEGSMTVCTTKKTSDPYIIIRARDLIKLLPES 53
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 198 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEA 257
S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFI P+E EA
Sbjct: 53 SQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKRQEERNKAFITPKEKPVAKPKEA 112
Query: 258 EDKTN-DVAAM 267
+T DVA +
Sbjct: 113 STETKIDVATI 123
>gi|448354706|ref|ZP_21543461.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
gi|445637037|gb|ELY90193.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
Length = 194
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ + T DP + +K +++R + R P A+++LDD+M D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALRLLDDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ ++ R
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIGTPPEVEAARTAA 147
Query: 130 EDCMQNKMH 138
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|448451612|ref|ZP_21592912.1| RNA-processing protein [Halorubrum litoreum JCM 13561]
gi|445810468|gb|EMA60493.1| RNA-processing protein [Halorubrum litoreum JCM 13561]
Length = 180
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEDLSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|448560526|ref|ZP_21633974.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|448582774|ref|ZP_21646278.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
gi|445722176|gb|ELZ73839.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|445732422|gb|ELZ84005.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
Length = 180
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVEMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|336122118|ref|YP_004576893.1| KH domain-containing protein [Methanothermococcus okinawensis IH1]
gi|334856639|gb|AEH07115.1| KH domain protein [Methanothermococcus okinawensis IH1]
Length = 184
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 7 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
KE GV ++ +G +T+ +T + +DP KA+D+IR + R +A+K++ D+ +
Sbjct: 31 KELGVEVVID-EDGEITIFSTEEQKDPLATWKAKDIIRAIGRGFNPEKALKLISDDYILE 89
Query: 67 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 126
II I + + + + ++G + + +E LT + V G T+A +G ++ ++ +
Sbjct: 90 IIDITDYANSDNAIRRLKGRVIGSGGKSRRYIEDLTDTDVSVYGKTIAILGEYEPVQIAK 149
Query: 127 RIVEDCMQNKMHP 139
V ++ H
Sbjct: 150 EAVSMILRGSSHA 162
>gi|448483379|ref|ZP_21605753.1| RNA-processing protein [Halorubrum arcis JCM 13916]
gi|448514185|ref|ZP_21616937.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|448526135|ref|ZP_21619753.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445692853|gb|ELZ45022.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|445699335|gb|ELZ51366.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445820751|gb|EMA70555.1| RNA-processing protein [Halorubrum arcis JCM 13916]
Length = 180
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|429191701|ref|YP_007177379.1| KH domain-containing protein [Natronobacterium gregoryi SP2]
gi|448325155|ref|ZP_21514553.1| RNA-processing protein [Natronobacterium gregoryi SP2]
gi|429135919|gb|AFZ72930.1| KH domain protein [Natronobacterium gregoryi SP2]
gi|445616294|gb|ELY69922.1| RNA-processing protein [Natronobacterium gregoryi SP2]
Length = 187
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ + T DP +K +++R + R A+ +LDDEM D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVRGLKGPEIVRAIGRGFAPEDALTLLDDEMMMFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G N T + +E L+G +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDLQRQKGRLIGENGRTRELMEELSGASVVIYGSTLGIIGTPEEVDAVRTAA 147
Query: 130 EDCMQNKMHPVYH 142
E + H +
Sbjct: 148 EMILDGAPHGTVY 160
>gi|448536208|ref|ZP_21622453.1| RNA-processing protein [Halorubrum hochstenium ATCC 700873]
gi|445702651|gb|ELZ54595.1| RNA-processing protein [Halorubrum hochstenium ATCC 700873]
Length = 180
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELMEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|397771874|ref|YP_006539420.1| KH domain protein [Natrinema sp. J7-2]
gi|397680967|gb|AFO55344.1| KH domain protein [Natrinema sp. J7-2]
Length = 182
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 28 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 84
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 85 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGAPQEVDAVRTAA 144
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 145 EMLLDGAPHGAVY 157
>gi|222481065|ref|YP_002567302.1| RNA-processing protein [Halorubrum lacusprofundi ATCC 49239]
gi|222453967|gb|ACM58232.1| KH type 1 domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 180
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAALVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|448427291|ref|ZP_21583644.1| RNA-processing protein [Halorubrum terrestre JCM 10247]
gi|445678742|gb|ELZ31227.1| RNA-processing protein [Halorubrum terrestre JCM 10247]
Length = 180
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|433430164|ref|ZP_20407477.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|448543955|ref|ZP_21625416.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|448551115|ref|ZP_21629257.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|448558510|ref|ZP_21633067.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|448573609|ref|ZP_21641092.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|448597756|ref|ZP_21654681.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
gi|432194607|gb|ELK51214.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|445706097|gb|ELZ57984.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|445710671|gb|ELZ62469.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|445712262|gb|ELZ64044.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|445718515|gb|ELZ70205.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|445739217|gb|ELZ90726.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
Length = 180
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVEMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|448433701|ref|ZP_21586028.1| RNA-processing protein [Halorubrum tebenquichense DSM 14210]
gi|445686293|gb|ELZ38629.1| RNA-processing protein [Halorubrum tebenquichense DSM 14210]
Length = 180
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELMEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|345006033|ref|YP_004808886.1| KH domain-containing protein [halophilic archaeon DL31]
gi|344321659|gb|AEN06513.1| KH domain protein [halophilic archaeon DL31]
Length = 180
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ-CDII 68
GV +++ +GS+ + T DP + A D+++ + R A+K+L+ EM+ +I
Sbjct: 30 GVRLDIDSEDGSVGIETVG---DPIAAMDAPDIVKAIGRGFKPESALKLLESEMRRFTLI 86
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
+ RNK +++ L+G + T + +E +G +++ G+TV +G + ++ VRR
Sbjct: 87 DLNEQTRNKNDLQRQKGRLIGEDGRTRELMEQFSGAEVVIYGSTVGIIGEPEEVETVRRA 146
Query: 129 VEDCMQNKMH-PVY 141
V + H PVY
Sbjct: 147 VGMILDGAPHGPVY 160
>gi|448342159|ref|ZP_21531111.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|448346687|ref|ZP_21535569.1| RNA-processing protein [Natrinema altunense JCM 12890]
gi|445626150|gb|ELY79499.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|445631949|gb|ELY85172.1| RNA-processing protein [Natrinema altunense JCM 12890]
Length = 185
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGAPQEVDAVRTAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|292654312|ref|YP_003534209.1| RNA-binding Pno1-like protein [Haloferax volcanii DS2]
gi|448293856|ref|ZP_21483959.1| RNA-processing protein [Haloferax volcanii DS2]
gi|291371752|gb|ADE03979.1| RNA-binding Pno1 homolog [Haloferax volcanii DS2]
gi|445569777|gb|ELY24348.1| RNA-processing protein [Haloferax volcanii DS2]
Length = 180
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGTTLGIIGQPEEVEVVRRAVEMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|448731493|ref|ZP_21713792.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
gi|445791821|gb|EMA42440.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
Length = 182
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ-CDIIKIGNLVRNKERFVKRRQHLVGP 90
DP + +K +++ + R A+ +LDDEM +++ + RNK +++ L+G
Sbjct: 49 DPMLGLKGPEIVEAIGRGFAPEDALALLDDEMMMLELVDVDAATRNKNDLERKKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
N T + + LTG +++ G TV A+G+ + ++ VR VE + H VY
Sbjct: 109 NGRTRELMAELTGAEVVIYGTTVGAIGAPQQVEVVRSAVEMLLDGAPHGAVY 160
>gi|433589530|ref|YP_007279026.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|448335674|ref|ZP_21524813.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
gi|433304310|gb|AGB30122.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|445616197|gb|ELY69826.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIGAPQEVDAVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|289581759|ref|YP_003480225.1| KH domain-containing protein [Natrialba magadii ATCC 43099]
gi|448282835|ref|ZP_21474117.1| RNA-processing protein [Natrialba magadii ATCC 43099]
gi|289531312|gb|ADD05663.1| KH domain protein [Natrialba magadii ATCC 43099]
gi|445575450|gb|ELY29925.1| RNA-processing protein [Natrialba magadii ATCC 43099]
Length = 192
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 69
V +++ GS+ + T DP + +K +++R + R P A+++L DD M DI+
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALRLLEDDMMMFDIVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ ++ R
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIGTPPEVEAARTAA 147
Query: 130 EDCMQNKMH 138
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|336253009|ref|YP_004596116.1| KH domain-containing protein [Halopiger xanaduensis SH-6]
gi|335336998|gb|AEH36237.1| KH domain protein [Halopiger xanaduensis SH-6]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDEMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEEGRTRELMEELTGADVVIYGSTLGIIGTPEQVDAVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|383620249|ref|ZP_09946655.1| putative RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|448695968|ref|ZP_21697622.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|445784079|gb|EMA34899.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R +A+++L++EM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEEALRLLENEMMMFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK + + L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDLQRHKGRLIGEGGRTRELMEELTGASVVIYGSTLGIIGAPEEVDAVRTAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448381536|ref|ZP_21561656.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
gi|445663023|gb|ELZ15783.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIGAPQEVDAVRTAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|313124877|ref|YP_004035141.1| universal archaeal kh domain-containing protein [Halogeometricum
borinquense DSM 11551]
gi|448287286|ref|ZP_21478499.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
gi|312291242|gb|ADQ65702.1| universal archaeal KH domain protein [Halogeometricum borinquense
DSM 11551]
gi|445572494|gb|ELY27032.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
Length = 180
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+IR + R A+ +LDDEM+ ++I + RNK +++ L+G
Sbjct: 49 DPVTGMVAPDVIRAVGRGFTPEAALSLLDDEMRAFELIDLQQHTRNKNDLQRQKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E LTG ++++G T+ +G + ++ VRR + H + +
Sbjct: 109 NGRTRELMEELTGAEVVIRGTTLGIIGQPEEVEAVRRATGMILDGAPHGAVYSFLERKHN 168
Query: 151 ELEKD 155
EL +D
Sbjct: 169 ELTRD 173
>gi|14520809|ref|NP_126284.1| RNA-processing protein [Pyrococcus abyssi GE5]
gi|5458025|emb|CAB49515.1| Predicted RNA-binding protein [Pyrococcus abyssi GE5]
gi|380741351|tpe|CCE69985.1| TPA: putative RNA-processing protein [Pyrococcus abyssi GE5]
Length = 221
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 79
G + +++T++T DP + KARD+++ + R +A ++L++ +II + +++ E+
Sbjct: 76 GEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 135
Query: 80 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
+ R ++G T + +E ++G + V G TVA +G+ ++ + +E +
Sbjct: 136 NALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 195
Query: 138 HPVYHIKILMVKKELEKDPALANEN 162
H + + KK+LE + + EN
Sbjct: 196 HGSVYRYLERRKKDLELEGNMYYEN 220
>gi|448503885|ref|ZP_21613514.1| RNA-processing protein [Halorubrum coriense DSM 10284]
gi|445692086|gb|ELZ44269.1| RNA-processing protein [Halorubrum coriense DSM 10284]
Length = 180
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D+I+ + R A+ ILD +++ D++ + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLVDLSEHTRNDNDLQRKKGRIIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 151 ELEKD 155
EL+ D
Sbjct: 169 ELDDD 173
>gi|448611239|ref|ZP_21661873.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
gi|445743671|gb|ELZ95152.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
Length = 180
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR V+ + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVDMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|409731003|ref|ZP_11272554.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|448722025|ref|ZP_21704566.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|445790428|gb|EMA41090.1| RNA-processing protein [Halococcus hamelinensis 100A6]
Length = 182
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKE 78
GS+ V T DP +K D+++ + R +A+ +LDD+ M ++ + + RNK
Sbjct: 40 GSVGVETVG---DPVQGLKGPDIVKAIGRGFAPDEALTLLDDDVMTLQVVDVESATRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E L+G +++ G TV +G + ++ VR VE + H
Sbjct: 97 DLTRQKGRLIGENGRTRQLMEELSGASVVIYGTTVGIIGLPQAVEVVRNAVEMILDGAPH 156
>gi|448307133|ref|ZP_21497034.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
gi|445596680|gb|ELY50765.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
Length = 185
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ + + DP +KA D++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAIDSVG---DPVRGLKAPDIVRAIGRGFAPEAALRLLEDEMMMFDLVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGTIGTPQQVDIVRTAA 147
Query: 130 EDCMQNKMHPVYH 142
E + H +
Sbjct: 148 EMILDGAPHGTVY 160
>gi|448578897|ref|ZP_21644256.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|448589289|ref|ZP_21649448.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
gi|445724825|gb|ELZ76452.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|445735717|gb|ELZ87265.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
Length = 180
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LD EM ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMLLLDQEMAMFELIEIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRKKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEAVRRAVEMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|389845633|ref|YP_006347872.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|448616749|ref|ZP_21665459.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|388242939|gb|AFK17885.1| putative RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|445751404|gb|EMA02841.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
Length = 180
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 78
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR V+ + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVDMILDGAPH 156
Query: 139 -PVY 141
VY
Sbjct: 157 GAVY 160
>gi|110668939|ref|YP_658750.1| RNA-processing protein [Haloquadratum walsbyi DSM 16790]
gi|385804524|ref|YP_005840924.1| ribosomal RNA assembly protein [Haloquadratum walsbyi C23]
gi|109626686|emb|CAJ53153.1| KH domain protein [Haloquadratum walsbyi DSM 16790]
gi|339730016|emb|CCC41321.1| KH domain protein [Haloquadratum walsbyi C23]
Length = 180
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D++R + R A+ ILDDEM+ ++I + RNK +++ L+G
Sbjct: 49 DPVRGMLAPDIVRAIGRGFTPTAALSILDDEMRTFELIDLDAHTRNKNDLQRQKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
N T + +E LTG ++++G T+ +G + ++ VRR + H +
Sbjct: 109 NGRTRELMEELTGAEVVIRGTTLGVIGQPEEVEAVRRATGMLLDGAPHGTVY 160
>gi|15791048|ref|NP_280872.1| RNA-processing protein [Halobacterium sp. NRC-1]
gi|169236798|ref|YP_001689998.1| RNA-processing protein [Halobacterium salinarum R1]
gi|10581643|gb|AAG20352.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727864|emb|CAP14652.1| KH domain protein [Halobacterium salinarum R1]
Length = 183
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ +G++ + +T DP ++A ++++ + R +A+ +LDD+M+ D I
Sbjct: 31 VDIDVDSQDGAVAIE---RTGDPVRGMQAPEIVQAIGRGFKPDEALTLLDDDMRMFDTID 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 117
IG RN +++ L+G N T + +E LTG +++ G+T +G
Sbjct: 88 IGRAARNDNDLRRKKGRLIGENGRTRELMEELTGASVVIYGSTFGVIG 135
>gi|284166911|ref|YP_003405190.1| KH domain-containing protein [Haloterrigena turkmenica DSM 5511]
gi|284016566|gb|ADB62517.1| KH domain protein [Haloterrigena turkmenica DSM 5511]
Length = 185
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAVGRGFAPEAALRLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGTPEQVDVVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448298866|ref|ZP_21488885.1| RNA-processing protein [Natronorubrum tibetense GA33]
gi|445589581|gb|ELY43810.1| RNA-processing protein [Natronorubrum tibetense GA33]
Length = 185
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIK 69
V +++ GS+ V T DP + +KA D++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVDTVG---DPVLGLKAPDIVRAIGRGFAPETALRLLEDDMIMFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RN +++ L+G T + +E L+G +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEGGRTRELMEELSGANVVIYGSTLGIIGAPQQVDVVRTAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448356505|ref|ZP_21545238.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
gi|445653538|gb|ELZ06409.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
Length = 185
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ + T DP + +K +++R + R P A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALQLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGS 118
I RNK +++ L+G T + +E L+G +++ G+T+ +G+
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIGT 136
>gi|429327831|gb|AFZ79591.1| ribosomal RNA assembly protein, putative [Babesia equi]
Length = 147
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 31/37 (83%)
Query: 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVK 38
VK +L +Y + C+LNLVEGSM+V TT++T DPYII+K
Sbjct: 65 VKKSLSDYHIKCDLNLVEGSMSVFTTKRTWDPYIIIK 101
>gi|242399085|ref|YP_002994509.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
gi|242265478|gb|ACS90160.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
Length = 220
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 79
G + +++T +T DP + KARD++ + R +A ++L++ +++++ +++ ER
Sbjct: 75 GEVFITSTEETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVELTDIIIGNER 134
Query: 80 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
+ R ++G T + +E ++G I V G TVA +G+ ++ + +E ++
Sbjct: 135 NALPRVRGRIIGRKGRTREIIEEMSGTEISVYGKTVAIIGNPLQVQVAKTAIEKLVKGSP 194
Query: 138 HPVYHIKILMVKKELEKDPAL 158
H + + KK+LE + +
Sbjct: 195 HGTVYKYLERRKKDLELEGGM 215
>gi|257052348|ref|YP_003130181.1| RNA-processing protein [Halorhabdus utahensis DSM 12940]
gi|256691111|gb|ACV11448.1| KH type 1 domain protein [Halorhabdus utahensis DSM 12940]
Length = 182
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNLVRNKERFVKRRQHLVGP 90
DP + +K D+++ + R A+++LD D M D+I I + RN + + L+G
Sbjct: 49 DPVLGLKGPDIVKAIGRGFSPEAALRLLDGDMMMFDVIDIDAVARNPNDLKRLKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
N T + +E LTG +++ G+T++ +G + + VR E ++ H
Sbjct: 109 NGRTRELMEDLTGADVVIYGSTLSIIGGPEQVDAVREAAEMILEGAPH 156
>gi|409095998|ref|ZP_11216022.1| RNA-processing protein [Thermococcus zilligii AN1]
Length = 236
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 79
G + ++ T KT DP + KARD++ + R +A ++ ++ ++I + +++ E+
Sbjct: 75 GEVFITATEKTDDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEVIDLTDVIIGNEK 134
Query: 80 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
+ R ++G T + +E ++G I V G TVA +G+ ++ + VE ++
Sbjct: 135 NALPRIRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIGNPIQIEVAKTAVEKLVRGSP 194
Query: 138 HPVYHIKILMVKKELE 153
H V + + KK+LE
Sbjct: 195 HGVVYRYLERRKKDLE 210
>gi|84490126|ref|YP_448358.1| RNA-processing protein [Methanosphaera stadtmanae DSM 3091]
gi|84373445|gb|ABC57715.1| predicted RNA-binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 233
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKE 78
G++ +S+T +T DP I KAR +I+ + R A+ + +D++ +II + + V ++K+
Sbjct: 43 GNIAISSTDETDDPLAIWKARYMIKAIGRGFNPDIALTLENDDLILEIINLQDYVGKSKK 102
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 134
V+++ ++G N T + + + I + G TV+ +G + ++ R +E ++
Sbjct: 103 ALVRQKGRIIGKNGRTRQIMHDMLDVEISIYGKTVSLIGEIENIQMAREAIEMILE 158
>gi|195575648|ref|XP_002077689.1| GD22935 [Drosophila simulans]
gi|194189698|gb|EDX03274.1| GD22935 [Drosophila simulans]
Length = 110
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 196 QP-SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNS 254
QP SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +R+ F+PP E S +S
Sbjct: 20 QPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASS 79
Query: 255 CEAEDKTNDVAAMAKSLKEK 274
+ ED ++ K+LK K
Sbjct: 80 RKKEDGSSSNKVDVKALKAK 99
>gi|448389236|ref|ZP_21565648.1| RNA-processing protein [Haloterrigena salina JCM 13891]
gi|445669140|gb|ELZ21755.1| RNA-processing protein [Haloterrigena salina JCM 13891]
Length = 185
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAVGRGFAPDAALRLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGTPEQVDAVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|57640735|ref|YP_183213.1| putative RNA-processing protein [Thermococcus kodakarensis KOD1]
gi|57159059|dbj|BAD84989.1| RNA-binding protein, containing KH domain [Thermococcus
kodakarensis KOD1]
Length = 238
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + ++ T +T DP + KARD++ + R +A ++ ++ +++ + +
Sbjct: 70 IEVDSETGEVFITATEETDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGETLEVVNLTD 129
Query: 73 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+V E+ + R ++G T + +E ++G I V G TVA +G+ ++ + VE
Sbjct: 130 IVVGNEKNALPRVRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIGNPIQVEVAKTAVE 189
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 168
+ H V + + KK+LE + E + LP
Sbjct: 190 KLARGSPHGVVYRYLERRKKDLELEATTYYEALEGKLP 227
>gi|124028254|ref|YP_001013574.1| putative RNA-processing protein [Hyperthermus butylicus DSM 5456]
gi|123978948|gb|ABM81229.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
Length = 192
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 33 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPN 91
PY+++KA++ +R ++ +A+++LDD+ +I + V + ++R + ++G
Sbjct: 59 PYMVMKAQEFVRAIAYGFSPERAMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEK 118
Query: 92 SSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
K +E +TG YI + N VA +G F+ ++ +E +Q + H
Sbjct: 119 GRARKTIEEMTGTYISIYDNYVAIIGDFETANIAKQAIEMLIQGRQH 165
>gi|448366616|ref|ZP_21554739.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
gi|445654071|gb|ELZ06927.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
Length = 186
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ +G++ V T DP +KA +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ + VR
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIGTPPQVDAVRSAA 147
Query: 130 EDCMQNKMHPVYH 142
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|375084290|ref|ZP_09731296.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
gi|374741050|gb|EHR77482.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
Length = 220
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + +++T KT DP + KARD++ + R +A ++L++ +++ + +
Sbjct: 68 IEVDSQTGEVFITSTEKTDDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVDLTD 127
Query: 73 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+V E+ + R ++G T + +E ++G I V G TVA +G+ ++ + +E
Sbjct: 128 VVVGNEKNALPRVRGRIIGRKGRTREIIEEMSGTDISVYGKTVAIIGNPIQVQIAKTAIE 187
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPAL 158
+ H + + KK+LE + +
Sbjct: 188 KLAKGSPHGTVYKYLERRKKDLELEGGM 215
>gi|315230264|ref|YP_004070700.1| RNA-binding protein [Thermococcus barophilus MP]
gi|315183292|gb|ADT83477.1| RNA-binding protein [Thermococcus barophilus MP]
Length = 222
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 2/148 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + +S+T KT DP + KARD++ + R +A ++ ++ +II + +
Sbjct: 70 IEVDSETGEVFISSTEKTDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEVLEIINLSD 129
Query: 73 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
++ E+ + R ++G T + +E ++G I V G TVA +G+ ++ + +E
Sbjct: 130 IIIGNEKNALPRIRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIGNPIQVEIAKTAIE 189
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPAL 158
+ H + + KK+LE + +
Sbjct: 190 KLAKGSPHGTVYKYLERRKKDLELEGGV 217
>gi|448330229|ref|ZP_21519514.1| RNA-processing protein [Natrinema versiforme JCM 10478]
gi|445612134|gb|ELY65869.1| RNA-processing protein [Natrinema versiforme JCM 10478]
Length = 185
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V T DP + +K +++R + R A+++L+++M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLENDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKTDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIGAPQEVDVVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|358346239|ref|XP_003637177.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355503112|gb|AES84315.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 90
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 29/31 (93%)
Query: 1 MVKGALKEYGVSCELNLVEGSMTVSTTRKTR 31
+VK +LKE+G+S ELNLVEGSMTVSTTRKT+
Sbjct: 47 LVKSSLKEFGISAELNLVEGSMTVSTTRKTK 77
>gi|325960092|ref|YP_004291558.1| KH domain-containing protein [Methanobacterium sp. AL-21]
gi|325331524|gb|ADZ10586.1| KH domain protein [Methanobacterium sp. AL-21]
Length = 192
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 20 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKE 78
GS++VS T T DP + K+R +++ + R ++K+L DE +II + + V ++K+
Sbjct: 43 GSISVSPTEATEDPLAVWKSRYIVKAIGRGFNPEISLKLLSDETLLEIINLPDYVGKSKK 102
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
++++ ++G T + +TG I + G TVA +G + + + VE + H
Sbjct: 103 AIMRQKARIIGKEGRTKDIIIDMTGVDISIYGKTVAIIGGMEQIHIAKEAVEMILNGVRH 162
Query: 139 -PVY 141
VY
Sbjct: 163 KTVY 166
>gi|20093951|ref|NP_613798.1| RNA-processing protein [Methanopyrus kandleri AV19]
gi|19886904|gb|AAM01728.1| Predicted RNA-binding protein containing KH domain) [Methanopyrus
kandleri AV19]
Length = 202
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDII 68
GV ++ G + + T + +DP ++KA++ + + R +A ++L +++ ++I
Sbjct: 41 GVELRIDSKTGEVEIRPTERVKDPLDLIKAKECVLAIGRGFSPERAFRLLREEDASLEVI 100
Query: 69 KIGNLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
+ LV RN + ++R ++G T + +E L+G + ++G TVA +G+ + L+ R+
Sbjct: 101 DLYELVGRNPKALERQRARIIGREGRTRQLIEELSGADVSIRGKTVALIGTPRQLQIARK 160
Query: 128 IVEDCMQNKMH 138
+E H
Sbjct: 161 AIEMLASGAPH 171
>gi|448350955|ref|ZP_21539765.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
gi|445635143|gb|ELY88314.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
Length = 186
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ +G++ V T DP +KA +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMVLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ + VR
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIGTPPQVDAVRSAA 147
Query: 130 EDCMQNKMHPVYH 142
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|76801154|ref|YP_326162.1| RNA-processing protein [Natronomonas pharaonis DSM 2160]
gi|76557019|emb|CAI48594.1| KH domain protein [Natronomonas pharaonis DSM 2160]
Length = 187
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ GS+ V + DP + +K D+++ + R +A+++L+D+MQ +I+
Sbjct: 31 VRLDIDSETGSVRVESVG---DPILGLKGPDIVKAIGRGFAPEEALRLLEDDMQLFEIVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK+ +++ L+G + T + + L+G +++ G+T+ +G+ + + VR
Sbjct: 88 IDAATRNKKDLRRKKGRLIGESGRTRELMAELSGADVVIYGSTLGIIGAPEQVDAVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMILDGAPHGAVY 160
>gi|300710112|ref|YP_003735926.1| KH domain-containing protein [Halalkalicoccus jeotgali B3]
gi|448297116|ref|ZP_21487164.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
gi|299123795|gb|ADJ14134.1| KH domain protein [Halalkalicoccus jeotgali B3]
gi|445580298|gb|ELY34684.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
Length = 187
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 69
V +++ G++ V T DP +K +++R + R A+++L DD M D+I
Sbjct: 31 VRLDVDSENGAVQVETVG---DPVTGLKGPEIVRAIGRGFAPEDAMELLEDDVMLFDLID 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK+ +++ L+G T + +E L+G +++ G+T+ +G + + VR
Sbjct: 88 IDAAARNKKDLQRKKGRLIGEGGRTRQIMEELSGANVVIYGSTMGVIGRPEQVSMVREAA 147
Query: 130 EDCMQNKMH 138
E ++ H
Sbjct: 148 EMILEGAPH 156
>gi|347523322|ref|YP_004780892.1| KH domain containing protein [Pyrolobus fumarii 1A]
gi|343460204|gb|AEM38640.1| KH domain protein [Pyrolobus fumarii 1A]
Length = 204
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 33 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPN 91
PY+++KAR+ +R ++ +A+++LD++ +I + V + ++R + ++G
Sbjct: 70 PYMVMKAREFVRAVAYGFSPERAMRVLDEDQVLIVIDLKQYVGDAPNHLQRIKGRIIGEQ 129
Query: 92 SSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+ +E +TG YI V + VA +G ++ + R +E ++ + H
Sbjct: 130 GRARRTIEEMTGTYISVYDSYVAIIGDYESAQAAREAIEMLIEGRQH 176
>gi|448417245|ref|ZP_21579263.1| RNA-processing protein [Halosarcina pallida JCM 14848]
gi|445678468|gb|ELZ30961.1| RNA-processing protein [Halosarcina pallida JCM 14848]
Length = 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + A D++R + R A+ +LDD+M+ ++I + RNK +++ L+G
Sbjct: 49 DPVAGMLAPDIVRAIGRGFTPEAALSLLDDDMRTFELIDLQQHTRNKNDLQRQKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 150
N T + +E L+G ++++G T+ +G + ++ VRR + H + +
Sbjct: 109 NGRTRELMEELSGADVVIRGTTLGIIGQPEEVEAVRRATGMLLDGAPHGAVYSFLERKHN 168
Query: 151 ELEKD 155
EL +D
Sbjct: 169 ELTRD 173
>gi|448363887|ref|ZP_21552482.1| RNA-processing protein [Natrialba asiatica DSM 12278]
gi|445645471|gb|ELY98475.1| RNA-processing protein [Natrialba asiatica DSM 12278]
Length = 186
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 69
V +++ +G++ V T DP +K +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKGPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ + VR
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIGTPPQVDAVRSAA 147
Query: 130 EDCMQNKMHPVYH 142
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|212223914|ref|YP_002307150.1| putative RNA-processing protein [Thermococcus onnurineus NA1]
gi|212008871|gb|ACJ16253.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 234
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + ++ T+ T DP + KARD++ + R +A ++ ++ ++I + +
Sbjct: 70 IEVDSETGEVFITATKDTDDPLAVWKARDVVTAIGRGFSPERAFRLFNEGEVLEVINLTD 129
Query: 73 LV--RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
++ +K + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 130 IIIGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVAKTAIE 189
Query: 131 DCMQNKMHPVYHIKILMVKKELEKDPAL------ANENWDRF 166
+ H V + + KK+LE + +EN++ F
Sbjct: 190 KLAKGSPHGVVYKYLERRKKDLELESVTYYEALGGSENFEGF 231
>gi|341581300|ref|YP_004761792.1| putative RNA-processing protein [Thermococcus sp. 4557]
gi|340808958|gb|AEK72115.1| putative RNA-processing protein [Thermococcus sp. 4557]
Length = 248
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + +++T +T DP + KARD++ + R +A ++ ++ +++ + +
Sbjct: 70 IEVDSETGEVFITSTEETSDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEVLEVVNLTD 129
Query: 73 LV--RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
++ +K + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 130 VIVGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVAKTAIE 189
Query: 131 DCMQNKMHPVYHIKILMVKKELE 153
+ H V + + KK+LE
Sbjct: 190 KLARGSPHGVVYKYLERRKKDLE 212
>gi|390962070|ref|YP_006425904.1| hypothetical protein containing KH domain [Thermococcus sp. CL1]
gi|390520378|gb|AFL96110.1| hypothetical protein containing KH domain [Thermococcus sp. CL1]
Length = 238
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 13 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 72
E++ G + ++ T+ T DP + KARD++ + R +A ++ ++ ++I + +
Sbjct: 70 IEVDSETGEVFITATKDTDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEMLEVINLTD 129
Query: 73 LV--RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
++ +K + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 130 IIVGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVAKTAIE 189
Query: 131 DCMQNKMHPVYHIKILMVKKELE 153
+ H V + + KK+LE
Sbjct: 190 KLARGSPHGVVYKYLERRKKDLE 212
>gi|296109403|ref|YP_003616352.1| KH domain protein [methanocaldococcus infernus ME]
gi|295434217|gb|ADG13388.1| KH domain protein [Methanocaldococcus infernus ME]
Length = 208
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 19 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 78
+G++T+ ++ DP + KA+D+++ ++R A+++L D+ +II I + +++
Sbjct: 49 DGTVTI-YSKNNEDPLALWKAKDIVKAIARGFNPEIALRLLSDDYVLEIINIEDYAKSEN 107
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+ + ++G + + +E LTG + V G TV+ +G ++ + VE ++ H
Sbjct: 108 SLRRLKGRVIGKEGKSRRYIEELTGASVSVYGKTVSIVGEADQVQIAKEAVEMLLRGASH 167
Query: 139 P 139
Sbjct: 168 S 168
>gi|48477323|ref|YP_023029.1| RNA-processing protein [Picrophilus torridus DSM 9790]
gi|48429971|gb|AAT42836.1| putative RNA-binding protein [Picrophilus torridus DSM 9790]
Length = 186
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 39 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKERFVKRRQHLVGPNSSTLKA 97
A ++++ ++R +A+ + ++ MQ +I + + N R + R ++G N T +
Sbjct: 62 ALNVVQAIARGFSPEKALTLFNENMQLIVISLKDFAGNNSNRINELRGRVIGRNGRTRQI 121
Query: 98 LEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
+E LT YI V GNTV+ +G F G+ + VE + + H VY
Sbjct: 122 IEELTNTYISVSGNTVSIIGDFIGIGYSKEAVEMLLLGRKHKTVY 166
>gi|333986521|ref|YP_004519128.1| KH domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333824665|gb|AEG17327.1| KH domain protein [Methanobacterium sp. SWAN-1]
Length = 192
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 12 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 71
+ E++ GS+ +S T DP + K R +++ + R A+K+ D++ +II +
Sbjct: 35 NIEIDSETGSIAISPREDTEDPLSVWKTRYIVKAIGRGFNPEIALKLTSDDLILEIINLP 94
Query: 72 NLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+ V ++K+ ++++ ++G + T + +TG + V G TVA +G + + + VE
Sbjct: 95 DYVGKSKKAVLRQKGRIIGKDGRTRDIITDMTGVNVSVYGKTVAMIGDMERIHIAKEAVE 154
Query: 131 DCMQNKMHPVYHIKILMVKKEL 152
++ H + + M +EL
Sbjct: 155 MILKGARHKSVYAFLEMKSREL 176
>gi|240103481|ref|YP_002959790.1| putative RNA-processing protein [Thermococcus gammatolerans EJ3]
gi|239911035|gb|ACS33926.1| RNA-binding protein, containing KH domain [Thermococcus
gammatolerans EJ3]
Length = 234
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 69
G E++ G + ++ T+KT+DP + KARD++ + R +A ++ ++ +I+
Sbjct: 67 GTKIEVDSETGEVFITATKKTKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVN 126
Query: 70 IGNLVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
+ ++V E+ + R ++G T + +E ++G + V G TVA +G+ ++ R
Sbjct: 127 LTDIVVGNEKNALPRVRGRIIGRRGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVART 186
Query: 128 IVEDCMQNKMHPVYHIKILMVKKELE 153
VE + H V + + KK+LE
Sbjct: 187 AVEKLARGSPHGVVYRYLERRKKDLE 212
>gi|344213153|ref|YP_004797473.1| putative RNA-processing protein/KH type 1 domain-containing protein
[Haloarcula hispanica ATCC 33960]
gi|343784508|gb|AEM58485.1| putative RNA-processing protein / KH type 1 domain protein
[Haloarcula hispanica ATCC 33960]
Length = 179
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 69
V +++ +G++ V + DP +K D+++ + R A+ +L DD M ++I
Sbjct: 28 VRLDIDSEDGTVKVESVG---DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 84
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK F +++ L+G T + ++ L+G +++ G+T+ +G + + VR
Sbjct: 85 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIGGPEQVDAVREAA 144
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 145 EMILDGAPHGSVY 157
>gi|330506562|ref|YP_004382990.1| hypothetical protein MCON_0291 [Methanosaeta concilii GP6]
gi|328927370|gb|AEB67172.1| conserved hypothetical protein [Methanosaeta concilii GP6]
Length = 180
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 12 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKI 70
S E++ G+++V++ DP +++ DL++ + R +A+ ILDDEM D++ I
Sbjct: 31 SLEIDSDTGTISVTSAE---DPLQVLRVMDLVKAIGRGFSPERALAILDDEMLMLDVLDI 87
Query: 71 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+ + + ++G + + + +E L+G + V G TVA +G + ++ R +E
Sbjct: 88 SKTAGTRSDMERLKGRIIGKDGRSREIMERLSGTKVSVYGKTVAILGYPEQIRVARAAIE 147
Query: 131 DCMQNKMH 138
+ H
Sbjct: 148 MLLDGAPH 155
>gi|55379140|ref|YP_136990.1| RNA-processing protein [Haloarcula marismortui ATCC 43049]
gi|448664456|ref|ZP_21684259.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|448683897|ref|ZP_21692517.1| RNA-processing protein [Haloarcula japonica DSM 6131]
gi|55231865|gb|AAV47284.1| unknown [Haloarcula marismortui ATCC 43049]
gi|445775101|gb|EMA26115.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|445783470|gb|EMA34299.1| RNA-processing protein [Haloarcula japonica DSM 6131]
Length = 182
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 69
V +++ +G++ V + DP +K D+++ + R A+ +L DD M ++I
Sbjct: 31 VRLDIDSEDGTVKVESVG---DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK F +++ L+G T + ++ L+G +++ G+T+ +G + + VR
Sbjct: 88 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIGGPEQVDAVREAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMILDGAPHGSVY 160
>gi|374629194|ref|ZP_09701579.1| KH domain protein [Methanoplanus limicola DSM 2279]
gi|373907307|gb|EHQ35411.1| KH domain protein [Methanoplanus limicola DSM 2279]
Length = 180
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 19 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNK 77
EG +TVS DP ++ +IR ++R +A+ +LDDE M DII +
Sbjct: 41 EGLVTVSG----EDPVNVLNTSQIIRAINRGFSPQRALTLLDDEDMMLDIIDLTAYCNTT 96
Query: 78 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
++ + R ++G + + +E +TG + V G TVA +G + ++ R VE ++
Sbjct: 97 KQMERIRGRIIGREGKSREQIEDMTGAIMSVLGKTVAIIGEVEQVRNTRTAVEMLIEGLP 156
Query: 138 H 138
H
Sbjct: 157 H 157
>gi|448655130|ref|ZP_21681982.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|448680413|ref|ZP_21690730.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
gi|445765579|gb|EMA16717.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|445768857|gb|EMA19934.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
Length = 182
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 69
V +++ +G++ V + DP +K D+++ + R A+ +L DD M ++I
Sbjct: 31 VRLDIDSEDGTVKVESVG---DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK F +++ L+G T + ++ L+G +++ G+T+ +G + + VR
Sbjct: 88 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIGGPEQVDAVREAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMILDGAPHGSVY 160
>gi|126180438|ref|YP_001048403.1| RNA-processing protein [Methanoculleus marisnigri JR1]
gi|125863232|gb|ABN58421.1| KH, type 1, domain protein [Methanoculleus marisnigri JR1]
Length = 180
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDII 68
G++ ++ EG +T+ + DP ++ A +++ ++R +A ++LDDE M DI+
Sbjct: 32 GITLRIDSEEGLVTL----EGEDPVGVMTATNVVSAINRGFSPERAFRLLDDEDMMLDIL 87
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
+ +L + + R ++G + ++ +E +T I V G TVA +G + R+
Sbjct: 88 DLADLSGTTRQLERLRGRIIGKSGTSRAQIEDMTATEISVHGKTVAIIGLPDQAETARKA 147
Query: 129 VEDCMQNKMH 138
+E +Q H
Sbjct: 148 IEMLIQGVPH 157
>gi|452208196|ref|YP_007488318.1| KH domain protein [Natronomonas moolapensis 8.8.11]
gi|452084296|emb|CCQ37635.1| KH domain protein [Natronomonas moolapensis 8.8.11]
Length = 187
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP + + D+++ + R A ++L+D+MQ +++ I RNK+ +++ L+G
Sbjct: 49 DPIVGLNGPDIVKAIGRGFAPEDAFRLLEDDMQMFELVDIEAATRNKKDLRRKKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
+ T + + L+G ++V G T+ +GS + + VR E + H VY
Sbjct: 109 DGRTRELMAELSGADVVVYGTTLGIIGSPEQVDAVRSAAEMILDGAPHGAVY 160
>gi|397781781|ref|YP_006546254.1| KH domain-containing protein [Methanoculleus bourgensis MS2]
gi|396940283|emb|CCJ37538.1| KH domain-containing protein [Methanoculleus bourgensis MS2]
Length = 208
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIK 69
+S +++ EG++ + + DP ++ A +++ ++R +A ++L+DE M +II
Sbjct: 61 ISLQIDSEEGTVMI----EGDDPIAVMTATSVVQAINRGFSPERAFRLLEDEDMMLEIIN 116
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
+ +L + R ++G ++ +E +T I V G TVA +G + + R+ V
Sbjct: 117 LADLTDTARHLERLRGRIIGKAGTSRAQIEDMTNTEISVHGKTVAIIGLPEQNEIARKAV 176
Query: 130 EDCMQNKMHPVYHIKILMVKKELEKD 155
E +Q H + + KKE ++D
Sbjct: 177 EMLIQGVPHENVYAFLDRKKKEAKRD 202
>gi|320101295|ref|YP_004176887.1| KH domain-containing protein [Desulfurococcus mucosus DSM 2162]
gi|319753647|gb|ADV65405.1| KH domain protein [Desulfurococcus mucosus DSM 2162]
Length = 205
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 94
++KARD++R ++ +A ++LD++ +I + V +K +KR ++G
Sbjct: 70 LMKARDIVRAIAYGFSPERAFRLLDEDQVLVVIDVRQYVGDKPNHIKRVLGRVIGEEGRA 129
Query: 95 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
+ LE TG YI + +A +G ++ R VE +Q + H +
Sbjct: 130 RRVLEEATGTYISIYEPYIAIIGDYESANIARTAVEMLIQGRTHSTVY 177
>gi|307354951|ref|YP_003896002.1| KH domain-containing protein [Methanoplanus petrolearius DSM 11571]
gi|307158184|gb|ADN37564.1| KH domain protein [Methanoplanus petrolearius DSM 11571]
Length = 180
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKERFVKRRQHLVGP 90
D +++KA D+I ++R ++ +L+DE M DII + +N ++ + R ++G
Sbjct: 50 DAPLVLKAADIITAINRGFSPKRSFCLLEDEDMMLDIIDLTAACKNPKQMERVRGRIIGK 109
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+ +E +TG I V G TVA +G + +K R +E ++ H
Sbjct: 110 AGKAREQIEDMTGAEISVLGKTVAIIGGIEQVKTARHAIEMLIEGMPH 157
>gi|219853339|ref|YP_002467771.1| RNA-processing protein [Methanosphaerula palustris E1-9c]
gi|219547598|gb|ACL18048.1| KH type 1 domain protein [Methanosphaerula palustris E1-9c]
Length = 179
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 12 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKI 70
S +N EG + V + D ++ A ++IR ++R A +LDDE M D+I++
Sbjct: 33 SITINSDEGMVKV----EGEDAVGVLLAGEVIRAINRGFSPAHAFTLLDDEDMILDVIEL 88
Query: 71 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 130
+ + + + R ++G + S+ + +E +T Y+ V G TVA +G +K R +E
Sbjct: 89 SSTGDTQRQLDRLRGRIIGRDGSSREQIETMTSTYLSVYGKTVAIIGLPDQVKNARAGIE 148
Query: 131 DCMQNKMHPVYHIKILMVKKELEKD 155
++ H + KKEL++D
Sbjct: 149 MLIKGIPHESVFAFLDRKKKELKQD 173
>gi|330835297|ref|YP_004410025.1| putative RNA-processing protein [Metallosphaera cuprina Ar-4]
gi|329567436|gb|AEB95541.1| putative RNA-processing protein [Metallosphaera cuprina Ar-4]
Length = 180
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 88
K ++PY +K +I L VP A K++ +E D+I + L +K + + ++
Sbjct: 42 KNQNPYQALKTVSVINALGLGVPVSDAFKLIGEEYILDVIDLKQLSHDKAVMSRIKGRII 101
Query: 89 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
G T + ++ TG I+V + VA +G+++ + ++ +E ++ K H +
Sbjct: 102 GEGGKTKRIIQEYTGVTIVVSDHHVALIGTYEQIPIAKKALELILKGKEHSTVY 155
>gi|256072157|ref|XP_002572403.1| hypothetical protein [Schistosoma mansoni]
gi|353233460|emb|CCD80815.1| hypothetical protein Smp_009340 [Schistosoma mansoni]
Length = 177
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 158 LANENWDRFLPKFKKKNVKQ-----KKV---KSKEKKPYTPFPPPPQPSKIDKLLESGEY 209
A+ ++ PK+++K + + +++ ++KK Y PFPPPP SKID LE G Y
Sbjct: 60 FASSSYTTLFPKYREKYLTEIWPVLRRIMMEHVRKKKEYNPFPPPPVQSKIDIELEKGTY 119
Query: 210 FLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPP 246
FL+E +++ K + K + + E K KR AA IPP
Sbjct: 120 FLAEAERKRLKVESNITKSNQISKERQKAKRSAALIPP 157
>gi|335441209|ref|ZP_08561929.1| putative RNA-processing protein [Halorhabdus tiamatea SARL4B]
gi|334888250|gb|EGM26551.1| putative RNA-processing protein [Halorhabdus tiamatea SARL4B]
Length = 182
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP +K D+++ + R A+++L+++M D+I I + RN + + L+G
Sbjct: 49 DPVTALKGPDIVKAIGRGFAPEDALRLLENDMMLFDVIDIDAVARNPNDRKRLKGRLIGE 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
+ T + +E LTG + + G+T++ +G + ++ VR E + H VY
Sbjct: 109 DGRTRELMEDLTGADVAIYGSTLSIIGGPEQVEAVREAAEMILDGAPHGSVY 160
>gi|147921591|ref|YP_684592.1| putative RNA-processing protein [Methanocella arvoryzae MRE50]
gi|56295562|emb|CAH04804.1| RNA-binding protein [uncultured archaeon]
gi|110619988|emb|CAJ35266.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 181
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 21 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKER 79
S TV K DP+ +KA D I+ ++R +A+K+LD E + D++ + +
Sbjct: 40 SGTVVIDSKEGDPFKALKASDAIKAIARGFSPEKALKLLDSEDLILDMMDLSKITDTPSD 99
Query: 80 FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
+ + ++G T + +E +TG I V G T++ +G + + VR ++ + H
Sbjct: 100 LTRIKGRIIGRGGKTREIIESMTGAKISVYGKTISIIGDAEQIMTVRTALDMLIDGAPHG 159
Query: 140 VYH 142
+
Sbjct: 160 AVY 162
>gi|297527325|ref|YP_003669349.1| KH domain-containing protein [Staphylothermus hellenicus DSM 12710]
gi|297256241|gb|ADI32450.1| KH domain protein [Staphylothermus hellenicus DSM 12710]
Length = 190
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 94
++KARD++R ++ +A ++LD++ II + V +K ++R + ++G
Sbjct: 60 LMKARDVVRAIAYGFSPERAFRLLDEDQVLLIIDLKQYVGDKPNHLQRVKGRIIGEGGKA 119
Query: 95 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
K +E +TG Y+ + N VA +G F+ + +E ++ + H +
Sbjct: 120 RKIIEEMTGTYVSIYKNYVAIIGDFESANIAKTAIELLIEGRRHSTVY 167
>gi|223478282|ref|YP_002582500.1| RNA-binding protein [Thermococcus sp. AM4]
gi|214033508|gb|EEB74335.1| RNA-binding protein, containing KH domain [Thermococcus sp. AM4]
Length = 232
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 69
G E++ G + +++T++T+DP + KARD++ + R +A ++ ++ +I+
Sbjct: 67 GTKIEVDSETGEVFITSTKETKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVN 126
Query: 70 IGNLVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 127
+ ++V E+ + R ++G T + +E ++G + V G TVA +G+ ++ R
Sbjct: 127 LTDIVVGNEKNALPRVRGRIIGRRGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVART 186
Query: 128 IVEDCMQNKMHPVYHIKILMVKKELE 153
+E + H V + + KK+LE
Sbjct: 187 AIEKLAKGSPHGVVYRYLERRKKDLE 212
>gi|390938910|ref|YP_006402648.1| KH domain-containing protein [Desulfurococcus fermentans DSM 16532]
gi|390192017|gb|AFL67073.1| KH domain protein [Desulfurococcus fermentans DSM 16532]
Length = 211
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 94
++KARD++R ++ +A ++LD++ +I + V +K VKR ++G +
Sbjct: 70 LMKARDIVRAVAYGFSPERAFRLLDEDQILLVIDVRQYVGDKPNHVKRVLGRVIGEDGKA 129
Query: 95 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
+ LE TG YI V VA +G ++ R +E ++ + H +
Sbjct: 130 RRVLEETTGTYISVYEPYVAIIGDYESANIARTAIEMLVEGRTHATVY 177
>gi|126466002|ref|YP_001041111.1| RNA-processing protein [Staphylothermus marinus F1]
gi|126014825|gb|ABN70203.1| KH, type 1, domain protein [Staphylothermus marinus F1]
Length = 200
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 94
++KARD++R ++ +A ++LD++ +I + V ++ ++R + ++G
Sbjct: 70 LMKARDVVRAIAYGFSPERAFRLLDEDQVLLVIDLKQYVGDRPNHLQRVKGRIIGEGGKA 129
Query: 95 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
+ +E +TG YI V N VA +G F+ + +E ++ + H +
Sbjct: 130 RRIIEEMTGTYISVYKNYVAIIGDFESANIAKTAIELLIEGRRHSTVY 177
>gi|146303436|ref|YP_001190752.1| RNA-processing protein [Metallosphaera sedula DSM 5348]
gi|145701686|gb|ABP94828.1| KH, type 1, domain protein [Metallosphaera sedula DSM 5348]
Length = 178
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/114 (18%), Positives = 60/114 (52%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 88
K ++PY +K +IR + V A+K++ +E+ D+I + + +++ + + ++
Sbjct: 42 KNQNPYQALKVVSVIRAIGLGVSVSDALKLMGEEVMMDVIDLKEISNSRDNMTRVKGRII 101
Query: 89 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
G T K ++ TG +++ G+ + +G+++ + ++ +E ++ + H +
Sbjct: 102 GEGGKTKKIIQEYTGVSVVISGHYITLLGNYEQIPIAKKALELLVKGREHSTVY 155
>gi|284161872|ref|YP_003400495.1| KH type 1 domain-containing protein [Archaeoglobus profundus DSM
5631]
gi|284011869|gb|ADB57822.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
Length = 177
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKIGNLVRNKERFVKR-RQHLVG 89
DPY ++ +D+++ ++ AIK+L+D+M D+I + + V +R ++R + ++G
Sbjct: 49 DPYKFMRVQDVVKAIAHGFNPDIAIKLLEDDMITLDVIDLTSYV--SDRHLQRIKGRIIG 106
Query: 90 PNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
S K LE L ++ V G TVA +G + + R +E + H
Sbjct: 107 KEGSMRKTLEDLLNVHVSVYGKTVAILGDVESVAIAREAIEMLINGAQHS 156
>gi|282164202|ref|YP_003356587.1| hypothetical protein MCP_1532 [Methanocella paludicola SANAE]
gi|282156516|dbj|BAI61604.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 180
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDII 68
G + +++ G++ + T D + +KA ++I+ ++R +A+K+L++E + D+I
Sbjct: 31 GATVDVDSESGTVVIGTEA---DAFKALKAAEVIKAVARGFSPEKALKLLENEDLVLDVI 87
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
+ NL + + + ++G N T + +E ++G + V G T++ +G + L VR
Sbjct: 88 DLSNLTDSPSDLKRLKGRIIGRNGKTREVIEQMSGARVSVYGKTISIIGDSEQLATVREA 147
Query: 129 VEDCMQNKMHPVYH 142
+ + H +
Sbjct: 148 LNMLIDGAPHGAVY 161
>gi|218884399|ref|YP_002428781.1| putative RNA-processing protein [Desulfurococcus kamchatkensis
1221n]
gi|218766015|gb|ACL11414.1| Predicted RNA-binding protein (contains KH domains)
[Desulfurococcus kamchatkensis 1221n]
Length = 211
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 94
++KARD++R ++ +A K+ D++ +I + V +K VKR ++G +
Sbjct: 70 LMKARDIVRAVAYGFSPERAFKLFDEDQILLVIDVRQYVGDKPNHVKRVLGRVIGEDGKA 129
Query: 95 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
+ LE TG YI V VA +G ++ R +E ++ + H +
Sbjct: 130 RRVLEETTGTYISVYEPYVAIIGDYESANIARTAIEMLVEGRTHATVY 177
>gi|361131250|gb|EHL02948.1| putative Ribosomal RNA assembly protein KRR1 [Glarea lozoyensis
74030]
Length = 119
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 181 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKE 217
K K KK YTPFPPP + SK+D +ESGEYFL ++ KE
Sbjct: 18 KWKSKKVYTPFPPPQEKSKVDLQIESGEYFLGKQAKE 54
>gi|374632061|ref|ZP_09704435.1| universal archaeal KH domain protein [Metallosphaera
yellowstonensis MK1]
gi|373525891|gb|EHP70671.1| universal archaeal KH domain protein [Metallosphaera
yellowstonensis MK1]
Length = 182
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 60/114 (52%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 88
K PY +K +I+ + VP+ +A+K++ ++ ++I + + +KE ++ + ++
Sbjct: 42 KNVSPYEAMKVVSVIKAVGYGVPSEEALKLMGEDYILEVIDLKESLGSKESLIRVKGRII 101
Query: 89 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
G + T + ++ TG I V + V +G+++ L R+ +E ++ + H +
Sbjct: 102 GEDGKTKRIIQEYTGVRIHVGDHFVVMLGTYEQLPIARKAIELLIKGREHSTVY 155
>gi|255566716|ref|XP_002524342.1| conserved hypothetical protein [Ricinus communis]
gi|223536433|gb|EEF38082.1| conserved hypothetical protein [Ricinus communis]
Length = 135
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 22/25 (88%)
Query: 53 PQAIKILDDEMQCDIIKIGNLVRNK 77
PQAIKIL DEMQ DIIKIGNLVR K
Sbjct: 61 PQAIKILHDEMQWDIIKIGNLVRTK 85
>gi|315425458|dbj|BAJ47121.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|343484294|dbj|BAJ49948.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 201
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 10 GVSCELNLVEGSMTVSTTR---KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
GVS +++ EG++ +S + + DP + KARD++ + R +A+K+++D
Sbjct: 43 GVSLQVDSSEGTVVISLAKPVEEGGDPASLFKARDIVTAIGRGFSPEKALKLVEDGTVLT 102
Query: 67 IIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
+I + + V + + R + ++G T + +E + V G+TVA +G ++ +
Sbjct: 103 VIDLTDYVGDSPNHLARVKARVIGTQGKTRRIIEETCQVDVSVYGDTVAIIGEYENARAA 162
Query: 126 RRIVEDCMQNKMH 138
V ++ H
Sbjct: 163 EEAVVTLVRGAPH 175
>gi|255587353|ref|XP_002534241.1| conserved hypothetical protein [Ricinus communis]
gi|223525652|gb|EEF28140.1| conserved hypothetical protein [Ricinus communis]
Length = 51
Score = 45.4 bits (106), Expect = 0.034, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 126 RRIVEDCMQNKMHPVYHIKILMVKKELEK 154
R+IVEDC+QNK+H VYHIKIL++K L++
Sbjct: 1 RKIVEDCIQNKLHQVYHIKILVMKNSLKR 29
>gi|159041550|ref|YP_001540802.1| putative RNA-processing protein [Caldivirga maquilingensis IC-167]
gi|157920385|gb|ABW01812.1| KH type 1 domain protein [Caldivirga maquilingensis IC-167]
Length = 184
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 12 SCELNL-----VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 66
S E+NL V+ V T + +P ++KAR +I+ L+ A+++L+D+ D
Sbjct: 28 SIEVNLKVQVEVKDDSVVLTPMQDANPDSVIKARQIIQALALGFSRDDALELLNDDKYLD 87
Query: 67 IIKIGNLV-RNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
++ + + + ++KE + R + ++G + LE LT I V+ V +G++ ++
Sbjct: 88 VVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRNLEELTETKIAVKDKAVGIIGNYDNVRA 147
Query: 125 VRRIVEDCMQNKMHPVYH 142
VR + + + H +
Sbjct: 148 VRDAIVMLINGRQHSTVY 165
>gi|429216945|ref|YP_007174935.1| KH domain-containing protein [Caldisphaera lagunensis DSM 15908]
gi|429133474|gb|AFZ70486.1| KH domain protein [Caldisphaera lagunensis DSM 15908]
Length = 198
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 22 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 81
+T+ P ++KA+D+I+ LS +A+K+LD+E +I I + V + +
Sbjct: 54 ITIEPLDNNTSPADMMKAKDIIQALSIGFVKEEALKLLDEENVLIVIDIKSKVGDSNNHI 113
Query: 82 KRRQ-HLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 140
KR ++G + + +E +TG I + N + +G + + +E + +MH
Sbjct: 114 KRVMGRIIGEDGRAKRTIEEITGTSIHIGNNLIGVIGDYDRATIAQYGIELLIDGRMHST 173
Query: 141 YH 142
+
Sbjct: 174 VY 175
>gi|386003028|ref|YP_005921327.1| hypothetical protein Mhar_2354 [Methanosaeta harundinacea 6Ac]
gi|357211084|gb|AET65704.1| hypothetical protein Mhar_2354 [Methanosaeta harundinacea 6Ac]
Length = 177
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKIGNLVRNKERFVKRRQHLVGP 90
DP + ++ +++R + R +A+ IL+DE+ D+I + K + + ++G
Sbjct: 48 DPIMAMRLAEVVRAIGRGFSPERALPILEDELLMLDVIDLSRAFNTKSDMARVKGRIIGK 107
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
+ T + E LTG I V G T+ +G+ ++ R +E + H +
Sbjct: 108 DGRTREIAEKLTGAGISVYGKTIGIIGNPDQIRVARTAIEMLIDGAPHGAVY 159
>gi|374723954|gb|EHR76034.1| putative RNA-processing protein [uncultured marine group II
euryarchaeote]
Length = 248
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV---RNKERFVKRRQHLV 88
DP +K D+I+ + R + AI++LDD+ +++ I + V N++R ++ R ++
Sbjct: 47 DPVKAMKFPDVIKAIGRGMAPKAAIRLLDDDHFFELVDIRSFVGKRSNQQRRIRAR--II 104
Query: 89 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
G K +E LT I + +TV +G +GL R+ VE H
Sbjct: 105 GSQGKIRKLIENLTDTQITIYNSTVVLVGEEEGLAAARQAVEMLAGGAEH 154
>gi|332797842|ref|YP_004459342.1| KH type 1 domain-containing protein [Acidianus hospitalis W1]
gi|332695577|gb|AEE95044.1| KH type 1 domain protein [Acidianus hospitalis W1]
Length = 177
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 30 TRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKERFVKRRQHLV 88
+++PY +K +IR + +++K+L D+ D+I + V N E + + ++
Sbjct: 42 SQNPYDAMKVISVIRAIGLGFSVDESLKLLSDDYMLDVIDLKQSVGSNPETLRRIKGRII 101
Query: 89 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
G N K ++ TG I + + VA +G + ++ R+ +E ++ K H +
Sbjct: 102 GENGKAKKIIQEYTGVSISITDHFVAIIGIYDQVQIARKAIELLIEGKEHSTVY 155
>gi|15899129|ref|NP_343734.1| RNA-processing protein [Sulfolobus solfataricus P2]
gi|284173756|ref|ZP_06387725.1| putative RNA-processing protein [Sulfolobus solfataricus 98/2]
gi|384432724|ref|YP_005642082.1| KH domain-containing protein [Sulfolobus solfataricus 98/2]
gi|13815678|gb|AAK42524.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600878|gb|ACX90481.1| KH domain protein [Sulfolobus solfataricus 98/2]
Length = 189
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 87
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYETLKAVSVIRAIGLGFDEQSAFRLLSDEYTLDVIDLKALIGSNPDTIRRVKGRI 104
Query: 88 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
+G N T + ++ TG I + G+ + +G + ++ ++ +E + K H
Sbjct: 105 IGENGKTKRIIQEYTGVDISIYGHYIGVLGPYDQVQIAKKAIELLIDGKEHS 156
>gi|448737732|ref|ZP_21719767.1| RNA-processing protein [Halococcus thailandensis JCM 13552]
gi|445803288|gb|EMA53586.1| RNA-processing protein [Halococcus thailandensis JCM 13552]
Length = 182
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS-VPAPQAIKILDDEMQCDII 68
GV +++ GS+ V + DP +K D++R + R P + D+ M ++I
Sbjct: 30 GVRLDIDSETGSVGVESVE---DPVQGLKGPDIVRAIGRGFAPEDALTLLDDELMLLELI 86
Query: 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 128
I RN+ +++ L+G N T + + L+G +++ G+TV A+G+ + ++ VR
Sbjct: 87 DIEAATRNETDLTRKKGRLIGENGRTRELMAELSGASVVIYGSTVGAIGTPEEVEVVRNA 146
Query: 129 VEDCMQNKMH 138
VE + H
Sbjct: 147 VEMILDGAPH 156
>gi|16081522|ref|NP_393876.1| RNA-processing protein [Thermoplasma acidophilum DSM 1728]
gi|10639568|emb|CAC11540.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 189
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 39 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR-NKERFVKRRQHLVGPNSSTLKA 97
A+ +++ + R +A+ + +D MQ II + + R + + ++G T
Sbjct: 65 AKSVVQAIGRGFNPDKAMLLFEDGMQLVIISLREFAKPGSSRIAQIKARVIGTGGKTRTI 124
Query: 98 LEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
+E LTG +I V G+TV+ +G + + + + K H VY
Sbjct: 125 IEELTGSFISVYGDTVSIIGDYLAVTYAEEAINMIINGKKHRTVY 169
>gi|408406039|ref|YP_006864023.1| RNA-binding protein containing KH domain [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408366635|gb|AFU60365.1| putative RNA-binding protein containing KH domain [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 200
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEM---QC 65
GV E++ G T+S+T+ + +A ++I +SR +A ++ +DE+ Q
Sbjct: 33 GVEIEIDSESGDATISSTKPV-EQMEAFRAVEVISAISRGFSPERAYRLFENDEIMFQQM 91
Query: 66 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 125
D+ N +K R ++G + +E L+G YI V G+ V +G+FK +K
Sbjct: 92 DLHDYAGKSPNALERIKGR--IIGEGGKARRMIEELSGAYISVYGHMVGFIGNFKEVKLA 149
Query: 126 RRIVEDCMQNKMH-PVYHI 143
+ + MH VY++
Sbjct: 150 SDAITLLAKGSMHKSVYNM 168
>gi|296242706|ref|YP_003650193.1| KH domain-containing protein [Thermosphaera aggregans DSM 11486]
gi|296095290|gb|ADG91241.1| KH domain protein [Thermosphaera aggregans DSM 11486]
Length = 213
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 94
++KARD+++ + +A+++L+++ +I + V +K V R ++G
Sbjct: 70 LMKARDIVKAIGYGFSPERAMRLLEEDQVLVVIDVRQYVGDKPNHVARVLGRIIGEEGKA 129
Query: 95 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
+ LE +TG +I + VA +G F+ + VE +Q + H +
Sbjct: 130 RRTLEEMTGTFISIYEPYVAIVGDFETANIAKTAVEMLIQGRRHSTVY 177
>gi|336476185|ref|YP_004615326.1| KH domain-containing protein [Methanosalsum zhilinae DSM 4017]
gi|335929566|gb|AEH60107.1| KH domain protein [Methanosalsum zhilinae DSM 4017]
Length = 178
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 90
DP ++A D+I ++R + + + DDEM D I I ++ + + ++G
Sbjct: 49 DPVKAMRAADVIHAIARGFNPEKVLDMFDDEMLIFDFIDISQFAGTQKELKRLKGRIIGK 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMG 117
+ +E LTG I + G TV+ +G
Sbjct: 109 DGKARATIETLTGVKISIYGKTVSMIG 135
>gi|119719426|ref|YP_919921.1| putative RNA-processing protein [Thermofilum pendens Hrk 5]
gi|119524546|gb|ABL77918.1| KH, type 1, domain protein [Thermofilum pendens Hrk 5]
Length = 197
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%)
Query: 33 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 92
PY + +A+ + +S A+ + DD ++I + + + +E + + ++G
Sbjct: 64 PYNVFRAKKALEAISIGFTVDDALLLGDDAYDLEVIDLSEVSKRREDLSRIKARIIGTEG 123
Query: 93 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
K LE +TG I++ V +G F+ K V+ +E + + H
Sbjct: 124 RFKKTLEDMTGARIVIGEKAVGIIGDFEQNKVVKEALERLIAGQSH 169
>gi|435850456|ref|YP_007312042.1| KH domain protein [Methanomethylovorans hollandica DSM 15978]
gi|433661086|gb|AGB48512.1| KH domain protein [Methanomethylovorans hollandica DSM 15978]
Length = 175
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ-CDIIKIGNLVRNKERFVKRRQHLVGP 90
DP ++A D+I+ ++R +A+ ++DDEM + I + N + ++ + ++G
Sbjct: 49 DPIQSMRAPDVIQAIARGFNPEKAMVLMDDEMMMLETIDLSNSAGTPQEMIRLKGRIIGK 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP-VYHI 143
T + +E + G I V G TV+ +G+ + + +R +E + H VY +
Sbjct: 109 AGKTREIMESMIGVKISVYGKTVSVLGTPEQNQIIRTAIEMLIGGATHGQVYGL 162
>gi|261350190|ref|ZP_05975607.1| KH domain-containing protein [Methanobrevibacter smithii DSM 2374]
gi|288860976|gb|EFC93274.1| KH domain-containing protein [Methanobrevibacter smithii DSM 2374]
Length = 206
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 19 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNK 77
+G++ ++ DP + A +++ ++R A+K++DD++ ++IK+ + ++K
Sbjct: 42 DGTVYITPQENMSDPLGVWNANHIVKAIARGFNPEVALKLVDDDIYLEVIKLPLYIGKSK 101
Query: 78 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
+ + ++G N T + + + + + G TV+ +G + + +E ++
Sbjct: 102 NALSRYKGRIIGQNGKTREIIMDMAEVQMAIYGKTVSLIGEMDNIMIAKEAIEMILKGSR 161
Query: 138 H 138
H
Sbjct: 162 H 162
>gi|148643014|ref|YP_001273527.1| putative RNA-processing protein [Methanobrevibacter smithii ATCC
35061]
gi|222445251|ref|ZP_03607766.1| hypothetical protein METSMIALI_00879 [Methanobrevibacter smithii
DSM 2375]
gi|148552031|gb|ABQ87159.1| predicted RNA-binding protein [Methanobrevibacter smithii ATCC
35061]
gi|222434816|gb|EEE41981.1| arCOG04150 universal archaeal KH domain protein [Methanobrevibacter
smithii DSM 2375]
Length = 206
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 19 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNK 77
+G++ ++ DP + A +++ ++R A+K++DD++ ++IK+ + ++K
Sbjct: 42 DGTVYITPQENMSDPLGVWNANHIVKAVARGFNPEVALKLVDDDIYLEVIKLPLYIGKSK 101
Query: 78 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 137
+ + ++G N T + + + + + G TV+ +G + + +E ++
Sbjct: 102 NALSRYKGRIIGQNGKTREIIMDMAEVQMAIYGKTVSLIGEMDNIMIAKEAIEMILKGSR 161
Query: 138 H 138
H
Sbjct: 162 H 162
>gi|150401024|ref|YP_001324790.1| RNA-processing protein [Methanococcus aeolicus Nankai-3]
gi|150013727|gb|ABR56178.1| KH type 1 domain protein [Methanococcus aeolicus Nankai-3]
Length = 186
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 61/121 (50%)
Query: 19 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 78
+G +T+ +T++ DP KARD+I+ + R +++K++ D+ +II I +
Sbjct: 44 DGEITIFSTKEQEDPLATWKARDIIKAIGRGFNPEKSLKLISDDYIIEIIDITEHASSDN 103
Query: 79 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+ + ++G + + +E LT + V G T+A +G ++ ++ + + ++ H
Sbjct: 104 AVKRLKGRVIGSGGKSRRYIEELTDTDVSVYGKTIAVLGDYESVQIAKEAINMILRGNSH 163
Query: 139 P 139
Sbjct: 164 S 164
>gi|229577991|ref|YP_002836389.1| RNA-processing protein [Sulfolobus islandicus Y.G.57.14]
gi|284996577|ref|YP_003418344.1| KH, type 1, domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|385772196|ref|YP_005644762.1| KH type 1 domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|228008705|gb|ACP44467.1| KH type 1 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|284444472|gb|ADB85974.1| KH, type 1, domain protein [Sulfolobus islandicus L.D.8.5]
gi|323476310|gb|ADX81548.1| KH type 1 domain protein [Sulfolobus islandicus HVE10/4]
Length = 186
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 87
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 42 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 101
Query: 88 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 102 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 153
>gi|294495346|ref|YP_003541839.1| KH domain protein [Methanohalophilus mahii DSM 5219]
gi|292666345|gb|ADE36194.1| KH domain protein [Methanohalophilus mahii DSM 5219]
Length = 178
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKIGNLVRNKERFVKRRQHLVGP 90
DP ++A + I+ + R + I +LDD++ ++I + + + + ++G
Sbjct: 49 DPVGTLRAIETIKAIGRGFNPEKTIPMLDDDLLMLEVIDLSKYASTNKEMTRLKGRIIGK 108
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
T + E L G I + G TV+ +G + ++ +R VE ++ H PVY
Sbjct: 109 GGKTREIAENLIGVKISIYGKTVSFIGYPEQIQIMRTAVEMLIEGANHGPVY 160
>gi|14325440|dbj|BAB60344.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 182
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 39 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR-NKERFVKRRQHLVGPNSSTLKA 97
A+++++ + R +A+ + ++ MQ II + + + + + ++G T
Sbjct: 58 AKNVVQAIGRGFNPGKAMLLFEENMQLVIISLREFAKPGSSKITQIKARVIGTGGKTRAI 117
Query: 98 LEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
+E LTG Y+ V G+T++ +G + + + + K H VY
Sbjct: 118 IEELTGSYLSVYGDTISIIGDYLAVTYAEEAINMIINGKKHRTVY 162
>gi|238618666|ref|YP_002913491.1| RNA-processing protein [Sulfolobus islandicus M.16.4]
gi|385774911|ref|YP_005647479.1| KH type 1 domain-containing protein [Sulfolobus islandicus REY15A]
gi|238379735|gb|ACR40823.1| KH type 1 domain protein [Sulfolobus islandicus M.16.4]
gi|323473659|gb|ADX84265.1| KH type 1 domain protein [Sulfolobus islandicus REY15A]
Length = 189
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 87
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 88 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 156
>gi|227829222|ref|YP_002831001.1| RNA-processing protein [Sulfolobus islandicus L.S.2.15]
gi|227455669|gb|ACP34356.1| KH type 1 domain protein [Sulfolobus islandicus L.S.2.15]
Length = 189
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 87
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 88 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 156
>gi|227826580|ref|YP_002828359.1| RNA-processing protein [Sulfolobus islandicus M.14.25]
gi|229583744|ref|YP_002842245.1| RNA-processing protein [Sulfolobus islandicus M.16.27]
gi|227458375|gb|ACP37061.1| KH type 1 domain protein [Sulfolobus islandicus M.14.25]
gi|228018793|gb|ACP54200.1| KH type 1 domain protein [Sulfolobus islandicus M.16.27]
Length = 186
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 87
K ++ Y KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 42 KGQNQYEAFKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 101
Query: 88 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 102 IGEGGKAKRIIQEYTGVDISIYGHHIGIIGPYDQVQIARKAIELLIDGKEHS 153
>gi|229583203|ref|YP_002841602.1| putative RNA-processing protein [Sulfolobus islandicus Y.N.15.51]
gi|228013919|gb|ACP49680.1| KH type 1 domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 189
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 87
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 88 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 139
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 156
>gi|13542007|ref|NP_111695.1| RNA-processing protein [Thermoplasma volcanium GSS1]
Length = 193
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 39 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR-NKERFVKRRQHLVGPNSSTLKA 97
A+++++ + R +A+ + ++ MQ II + + + + + ++G T
Sbjct: 69 AKNVVQAIGRGFNPGKAMLLFEENMQLVIISLREFAKPGSSKITQIKARVIGTGGKTRAI 128
Query: 98 LEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 141
+E LTG Y+ V G+T++ +G + + + + K H VY
Sbjct: 129 IEELTGSYLSVYGDTISIIGDYLAVTYAEEAINMIINGKKHRTVY 173
>gi|119872284|ref|YP_930291.1| RNA-processing protein [Pyrobaculum islandicum DSM 4184]
gi|119673692|gb|ABL87948.1| conserved hypothetical protein [Pyrobaculum islandicum DSM 4184]
Length = 176
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 50/103 (48%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTL 95
++K R++I+ ++ QA+++ +DE +I + + + ++G
Sbjct: 59 VLKLREMIKAIALGFTPEQALELENDEYTLVVIDLKEYTDKPNHLRRIKGRIIGEEGRAR 118
Query: 96 KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+ +E L +++V N VA +G + ++ RR VE ++ K H
Sbjct: 119 RTIEYLAEVHMVVGDNYVAILGKMEDVEIARRAVEMLIEGKKH 161
>gi|385805861|ref|YP_005842259.1| KH, type 1, domain-containing protein [Fervidicoccus fontis Kam940]
gi|383795724|gb|AFH42807.1| KH, type 1, domain protein [Fervidicoccus fontis Kam940]
Length = 206
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 51/107 (47%)
Query: 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTL 95
I+KA+++IR ++ +A ++LD++ +I + + + + + ++G T
Sbjct: 69 IIKAKEIIRAIAIGFTPEEAFRLLDEDQILIVINLKEINEDPNGIKRIKSRIIGEEGRTR 128
Query: 96 KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
K +E TG +++ + + +G F+ R + + K H V +
Sbjct: 129 KIIEETTGSKVVIGESAIGIIGDFEQASIAERAIRMLIDGKPHSVVY 175
>gi|383320176|ref|YP_005381017.1| KH domain-containing protein [Methanocella conradii HZ254]
gi|379321546|gb|AFD00499.1| universal archaeal KH domain protein [Methanocella conradii HZ254]
Length = 180
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 37 VKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTL 95
++A ++I+ ++R +A+++LD+E + DI+ + L + + + ++G T
Sbjct: 55 LRAAEVIKAIARGFSPEKALRLLDNEDLILDIMDLSVLSDSPADLKRIKGRIIGKGGKTR 114
Query: 96 KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
+ +E +TG + V G T++ +G + L VR ++ + H +
Sbjct: 115 EVIEQMTGARLSVYGKTISIIGDAEQLATVRAALDMLIDGAPHGAVY 161
>gi|393795496|ref|ZP_10378860.1| RNA-processing protein [Candidatus Nitrosoarchaeum limnia BG20]
Length = 189
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 11 VSCELNLVEGSMTVSTTRKTRD--PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 68
V+ +++ G + +++ K D P+ KA ++I + R A +L E +I
Sbjct: 34 VTLDIDGQSGEVFITSNGKVEDIEPF---KAMEIIIAIGRGFSPENAFSLLKGENALHVI 90
Query: 69 KI----GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
+ G N ER R ++G K +E LTG +I V G TV+ +G L+
Sbjct: 91 DLREFAGKSNANIERIKGR---IIGEGGKARKNMENLTGTHISVYGKTVSIIGDTSKLRL 147
Query: 125 VRRIVEDCMQNKMHPVYHIKI 145
V + +H + K+
Sbjct: 148 VVDAISSISNGSIHGAVYNKL 168
>gi|329766436|ref|ZP_08257980.1| putative RNA-processing protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137035|gb|EGG41327.1| putative RNA-processing protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 189
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 11 VSCELNLVEGSMTVSTTRKTRD--PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 68
V+ +++ G + +++ K D P+ KA ++I + R A +L E +I
Sbjct: 34 VTLDIDGQSGEVFITSNGKVEDIEPF---KAMEIIIAIGRGFSPENAFSLLKGENTLHVI 90
Query: 69 KI----GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 124
+ G N ER R ++G K +E LTG +I V G TV+ +G L+
Sbjct: 91 DLREFAGKSNANIERIKGR---IIGEGGKARKNMENLTGTHISVYGKTVSIIGDTSKLRL 147
Query: 125 VRRIVEDCMQNKMHPVYHIKI 145
V + +H + K+
Sbjct: 148 VVDAISSISNGSIHGAVYNKL 168
>gi|21228114|ref|NP_634036.1| RNA-processing protein [Methanosarcina mazei Go1]
gi|452210580|ref|YP_007490694.1| RNA-binding protein [Methanosarcina mazei Tuc01]
gi|20906556|gb|AAM31708.1| putative RNA-binding protein [Methanosarcina mazei Go1]
gi|452100482|gb|AGF97422.1| RNA-binding protein [Methanosarcina mazei Tuc01]
Length = 182
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 12 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKI 70
+C+L + S + T + DP + + I+ + R +A++ILDDEM ++I +
Sbjct: 31 TCQLEIESDSGKIDVTCEG-DPLKEFRVLETIKAIGRGFSPEKALEILDDEMLMLEVIDL 89
Query: 71 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 117
++ + + + ++G N T + E L I V G TV+ +G
Sbjct: 90 SDVATTPKELQRIKGRIIGRNGRTRELAESLINVKISVYGKTVSVLG 136
>gi|15920728|ref|NP_376397.1| putative RNA-processing protein [Sulfolobus tokodaii str. 7]
gi|15621511|dbj|BAB65506.1| hypothetical protein STK_05120 [Sulfolobus tokodaii str. 7]
Length = 181
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 52/114 (45%)
Query: 29 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 88
K + Y +K +I+ + +A+K++ D+ DII + + E + + ++
Sbjct: 42 KDNNAYEAMKVVSVIKAIGVGFDVDEAMKLMRDDYVLDIIDLKDSTNGPEDMKRIKGRII 101
Query: 89 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 142
G T K ++ TG I++ + V +G+ + +R +E ++ K H +
Sbjct: 102 GEKGKTKKIIQEYTGVNIIITDHYVGILGTIEQADIAKRAIEMLIKGKEHSTVY 155
>gi|322368236|ref|ZP_08042805.1| putative RNA-processing protein [Haladaptatus paucihalophilus
DX253]
gi|320552252|gb|EFW93897.1| putative RNA-processing protein [Haladaptatus paucihalophilus
DX253]
Length = 182
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV-PAPQAIKILDDEMQCDIIK 69
V +++ +GS+ V +T DP +KA ++++ + R P + + DD M D++
Sbjct: 31 VRLDIDSDDGSVRVE---QTGDPVRGLKAPEIVKAIGRGFSPEEALVLLDDDLMLFDLLD 87
Query: 70 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 129
I RNK +++ L+G N T + +E LTG +++ G T+ +G + ++ VR
Sbjct: 88 IEAAARNKNDLQRQKGRLIGENGRTRQLMEELTGANVVIYGTTLGIIGQPQQVEAVRSAA 147
Query: 130 EDCMQNKMH-PVY 141
E + H VY
Sbjct: 148 EMLLDGAPHGSVY 160
>gi|340345434|ref|ZP_08668566.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520575|gb|EGP94298.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 190
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 38 KARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI----GNLVRNKERFVKRRQHLVGPNSS 93
KA +++ + R A+ +L E +I + G N ER R ++G
Sbjct: 60 KAMEIVTAIGRGFSPDNAMSLLKGENALHVIDLREFAGKSNANIERIKGR---IIGEGGK 116
Query: 94 TLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELE 153
K +E LTG +I V G TV+ +G LK V + +H + K+ ++ +
Sbjct: 117 ARKNMENLTGTHISVYGKTVSIIGDTSKLKLVVDAISSISNGSIHGAVYNKLEAANRKSK 176
Query: 154 KDPALANENWDRF 166
++ EN D F
Sbjct: 177 QEKMQLWENQDVF 189
>gi|432329629|ref|YP_007247772.1| universal archaeal KH domain protein [Methanoregula formicicum
SMSP]
gi|432136338|gb|AGB01265.1| universal archaeal KH domain protein [Methanoregula formicicum
SMSP]
Length = 181
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 32 DPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKERFVKRRQHLVGP 90
D +++A +++ ++R +A ++++DE + ++I + + N + + R ++G
Sbjct: 51 DTVSLLRAVEIVNAINRGFSPERAFEMIEDEDLLLEVIDLAGMADNPRQLDRLRGRIIGK 110
Query: 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 138
+ + +E +T I V G TVA +G + LK R V+ ++ H
Sbjct: 111 DGRAREQIEDMTDVEISVFGKTVALIGYPEQLKTARAAVDMLIEGVPH 158
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,682,390,390
Number of Sequences: 23463169
Number of extensions: 196480380
Number of successful extensions: 1201077
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 6940
Number of HSP's that attempted gapping in prelim test: 1098167
Number of HSP's gapped (non-prelim): 55527
length of query: 307
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 165
effective length of database: 9,027,425,369
effective search space: 1489525185885
effective search space used: 1489525185885
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)