Query 021811
Match_columns 307
No_of_seqs 228 out of 545
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 09:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tua_A Hypothetical protein AP 100.0 7.3E-47 2.5E-51 336.3 15.1 150 4-154 28-179 (191)
2 2e3u_A PH-DIM2P, hypothetical 100.0 4.9E-39 1.7E-43 290.5 14.5 149 2-150 56-207 (219)
3 2jvz_A KH type-splicing, FAR u 98.8 5.1E-09 1.7E-13 87.2 7.5 117 2-135 24-160 (164)
4 1j4w_A FUSE binding protein; s 98.7 3E-08 1E-12 84.1 9.2 118 2-133 25-174 (174)
5 2anr_A Neuro-oncological ventr 98.7 1.2E-07 4E-12 80.6 10.6 120 2-135 28-175 (178)
6 3krm_A Insulin-like growth fac 98.6 1.9E-07 6.4E-12 78.1 9.5 113 2-135 25-156 (163)
7 2jzx_A Poly(RC)-binding protei 98.5 7.5E-07 2.6E-11 74.2 10.4 116 2-134 27-158 (160)
8 1dtj_A RNA-binding neurooncolo 98.5 1.1E-07 3.7E-12 71.1 4.3 52 83-134 13-74 (76)
9 1ec6_A RNA-binding protein NOV 98.4 1.8E-07 6.2E-12 72.1 3.9 53 83-135 13-75 (87)
10 2opv_A KHSRP protein; KH domai 98.4 2.9E-07 9.9E-12 70.8 4.3 52 83-134 24-84 (85)
11 1x4n_A FAR upstream element bi 98.3 4.1E-07 1.4E-11 71.1 4.7 53 83-135 25-84 (92)
12 2p2r_A Poly(RC)-binding protei 98.3 3.3E-07 1.1E-11 68.8 3.8 52 83-134 15-73 (76)
13 1k1g_A SF1-BO isoform; splicin 98.3 2.2E-07 7.5E-12 78.0 3.1 71 83-153 23-119 (131)
14 2ctm_A Vigilin; K homology typ 98.3 4.3E-07 1.5E-11 71.9 4.4 64 62-134 15-84 (95)
15 2hh2_A KH-type splicing regula 98.3 7.6E-07 2.6E-11 71.5 5.8 55 83-137 17-81 (107)
16 2bl5_A MGC83862 protein, quaki 98.3 1E-06 3.4E-11 75.2 6.2 82 83-165 18-131 (140)
17 1x4m_A FAR upstream element bi 98.3 1.5E-06 5E-11 68.2 6.6 54 82-135 24-86 (94)
18 1zzk_A Heterogeneous nuclear r 98.3 7.6E-07 2.6E-11 68.0 4.7 52 83-134 17-75 (82)
19 1vig_A Vigilin; RNA-binding pr 98.2 9.3E-07 3.2E-11 66.1 4.6 51 83-133 15-70 (71)
20 1we8_A Tudor and KH domain con 98.2 8.2E-07 2.8E-11 70.8 3.8 53 83-135 25-86 (104)
21 2yqr_A KIAA0907 protein; struc 98.2 8.7E-07 3E-11 73.6 4.0 56 83-139 29-102 (119)
22 1j5k_A Heterogeneous nuclear r 98.2 9.8E-07 3.4E-11 68.4 3.7 52 83-134 24-82 (89)
23 1wvn_A Poly(RC)-binding protei 98.2 1.5E-06 5E-11 66.2 4.2 53 83-135 16-75 (82)
24 2ctk_A Vigilin; K homology typ 98.1 1.5E-06 5.2E-11 69.8 4.1 54 82-135 26-84 (104)
25 2qnd_A FMR1 protein; KH domain 98.1 6.5E-06 2.2E-10 69.1 7.3 103 2-135 26-142 (144)
26 2ctl_A Vigilin; K homology typ 98.1 2.8E-06 9.7E-11 67.3 4.6 61 64-133 17-85 (97)
27 2hh3_A KH-type splicing regula 98.1 2.8E-06 9.6E-11 68.6 4.4 53 83-135 21-80 (106)
28 2axy_A Poly(RC)-binding protei 98.1 2.5E-06 8.7E-11 63.9 3.8 53 82-134 14-71 (73)
29 2cte_A Vigilin; K homology typ 98.0 2.8E-06 9.7E-11 66.6 3.1 52 83-134 27-83 (94)
30 2dgr_A Ring finger and KH doma 97.9 1.4E-05 4.8E-10 62.0 6.1 53 82-134 19-75 (83)
31 2jvz_A KH type-splicing, FAR u 97.7 3E-05 1E-09 64.3 4.3 53 83-135 12-73 (164)
32 2jzx_A Poly(RC)-binding protei 97.6 2.7E-05 9.4E-10 64.7 3.5 53 82-134 14-71 (160)
33 1j4w_A FUSE binding protein; s 97.5 6E-05 2.1E-09 63.7 3.9 53 83-135 13-72 (174)
34 2anr_A Neuro-oncological ventr 97.5 7.9E-05 2.7E-09 63.1 4.4 57 82-138 15-81 (178)
35 2ctj_A Vigilin; K homology typ 97.5 0.00014 4.9E-09 57.6 5.5 65 61-134 14-84 (95)
36 3krm_A Insulin-like growth fac 97.4 8.6E-05 2.9E-09 61.9 3.4 53 83-135 13-73 (163)
37 2cpq_A FragIle X mental retard 97.0 0.00019 6.4E-09 57.2 1.5 50 83-132 25-78 (91)
38 2ctf_A Vigilin; K homology typ 96.8 0.00091 3.1E-08 53.5 4.2 52 83-134 37-91 (102)
39 3u1k_A Polyribonucleotide nucl 96.5 0.00093 3.2E-08 68.5 2.6 51 83-133 577-629 (630)
40 2e3u_A PH-DIM2P, hypothetical 95.9 0.0075 2.6E-07 54.3 5.0 55 82-136 43-104 (219)
41 3n89_A Defective in GERM LINE 95.2 0.0079 2.7E-07 58.5 2.7 77 47-132 11-103 (376)
42 3n89_A Defective in GERM LINE 94.4 0.024 8.3E-07 55.0 3.8 127 2-133 54-259 (376)
43 4aid_A Polyribonucleotide nucl 93.1 0.014 4.9E-07 60.9 -0.6 53 83-135 580-634 (726)
44 3v69_A Protein filia; RNA-bind 92.6 0.097 3.3E-06 44.9 4.1 63 83-151 66-134 (140)
45 1tua_A Hypothetical protein AP 92.2 0.092 3.2E-06 46.5 3.6 53 83-135 14-73 (191)
46 3gku_A Probable RNA-binding pr 88.3 0.16 5.5E-06 46.2 1.7 79 84-162 103-195 (225)
47 2cpq_A FragIle X mental retard 84.1 0.49 1.7E-05 37.5 2.2 49 2-54 37-86 (91)
48 2pt7_G HP1451, hypothetical pr 73.4 1.1 3.6E-05 38.5 1.1 88 36-133 4-101 (152)
49 2qnd_A FMR1 protein; KH domain 72.4 1.3 4.4E-05 36.7 1.4 46 82-127 13-62 (144)
50 3cdi_A Polynucleotide phosphor 64.2 1.4 4.8E-05 45.9 0.0 50 84-133 571-622 (723)
51 2opv_A KHSRP protein; KH domai 64.1 13 0.00043 27.8 5.3 41 2-48 36-84 (85)
52 4e9j_A General secretion pathw 64.0 16 0.00054 32.3 6.8 111 5-133 38-171 (246)
53 4e9j_A General secretion pathw 62.4 38 0.0013 29.8 9.0 100 10-132 139-240 (246)
54 2cte_A Vigilin; K homology typ 60.6 8.1 0.00028 29.6 3.7 42 2-48 39-83 (94)
55 2yqr_A KIAA0907 protein; struc 57.5 23 0.00078 28.9 6.1 45 2-50 41-100 (119)
56 1dtj_A RNA-binding neurooncolo 55.0 18 0.00061 26.0 4.7 41 2-47 25-73 (76)
57 3ezj_A General secretion pathw 53.9 72 0.0025 27.8 9.3 101 11-132 136-238 (241)
58 2ctk_A Vigilin; K homology typ 52.7 14 0.00049 28.9 4.1 47 2-53 39-88 (104)
59 2p2r_A Poly(RC)-binding protei 52.2 25 0.00086 25.4 5.1 42 2-48 27-73 (76)
60 2kyz_A Heavy metal binding pro 50.9 40 0.0014 22.1 5.6 41 2-52 19-61 (67)
61 1wvn_A Poly(RC)-binding protei 49.4 25 0.00085 25.9 4.7 42 2-48 28-74 (82)
62 1we8_A Tudor and KH domain con 49.2 19 0.00065 27.9 4.2 43 2-49 37-86 (104)
63 2ba0_A Archeal exosome RNA bin 48.9 27 0.00094 31.0 5.7 68 85-153 148-218 (229)
64 3dxs_X Copper-transporting ATP 47.6 34 0.0012 23.1 5.0 38 2-39 20-59 (74)
65 3iwl_A Copper transport protei 47.1 36 0.0012 23.0 5.0 33 2-37 19-52 (68)
66 1x4n_A FAR upstream element bi 47.0 27 0.00091 26.5 4.7 42 2-48 37-83 (92)
67 2hh3_A KH-type splicing regula 46.9 40 0.0014 26.5 5.8 42 2-48 33-79 (106)
68 2hh2_A KH-type splicing regula 46.3 35 0.0012 26.6 5.4 43 2-49 29-79 (107)
69 1vig_A Vigilin; RNA-binding pr 46.2 29 0.001 25.1 4.6 39 2-46 27-69 (71)
70 1j5k_A Heterogeneous nuclear r 46.0 24 0.00082 26.5 4.2 42 2-48 36-82 (89)
71 2z0s_A Probable exosome comple 44.1 40 0.0014 29.9 6.1 69 83-152 158-230 (235)
72 4a4j_A Pacszia, cation-transpo 43.9 46 0.0016 22.0 5.1 36 2-38 20-57 (69)
73 1ec6_A RNA-binding protein NOV 42.3 43 0.0015 24.9 5.1 42 2-48 25-74 (87)
74 2ctl_A Vigilin; K homology typ 38.6 52 0.0018 25.3 5.2 42 2-48 39-86 (97)
75 2ctm_A Vigilin; K homology typ 38.6 53 0.0018 25.2 5.2 40 2-47 39-83 (95)
76 1x4m_A FAR upstream element bi 37.5 48 0.0017 25.1 4.8 44 2-50 37-87 (94)
77 3ezj_A General secretion pathw 37.4 54 0.0018 28.6 5.7 113 5-133 25-167 (241)
78 2ctj_A Vigilin; K homology typ 36.8 46 0.0016 25.7 4.6 40 2-47 39-83 (95)
79 1zzk_A Heterogeneous nuclear r 36.3 52 0.0018 24.2 4.7 41 2-47 29-74 (82)
80 3oss_D Type 2 secretion system 34.3 36 0.0012 29.2 4.0 29 104-132 148-178 (181)
81 3can_A Pyruvate-formate lyase- 30.9 2.1E+02 0.007 23.0 8.6 109 19-133 4-120 (182)
82 1e3p_A Guanosine pentaphosphat 27.9 5.4 0.00019 41.8 -2.7 51 83-133 608-660 (757)
83 1k1g_A SF1-BO isoform; splicin 27.5 1E+02 0.0036 25.1 5.5 44 2-49 35-99 (131)
84 2dgr_A Ring finger and KH doma 26.6 75 0.0026 23.9 4.2 40 2-46 32-73 (83)
85 3dm8_A Uncharacterized protein 25.8 67 0.0023 25.0 3.9 76 36-120 7-91 (143)
86 3fry_A Probable copper-exporti 25.5 72 0.0025 21.7 3.7 25 2-26 23-48 (73)
87 2cxc_A NUSA; transcription ter 25.2 11 0.00037 31.9 -0.9 27 83-109 113-139 (144)
88 2axy_A Poly(RC)-binding protei 25.0 1.5E+02 0.0052 21.2 5.5 41 2-47 27-70 (73)
89 1cc8_A Protein (metallochapero 24.9 1.5E+02 0.0052 19.8 5.3 25 2-26 22-49 (73)
90 2lfv_A Protein DAMX; cell divi 29.5 17 0.00057 29.1 0.0 27 108-134 58-86 (106)
91 1cpz_A Protein (COPZ); copper 23.0 1.5E+02 0.0051 18.7 5.6 26 2-27 18-45 (68)
92 2l3m_A Copper-ION-binding prot 22.9 1.6E+02 0.0053 18.9 5.2 26 2-27 23-50 (71)
93 1p90_A NAFY protein, hypotheti 22.5 1.5E+02 0.0052 24.2 5.7 51 89-139 53-117 (145)
94 2je6_I RRP4, exosome complex R 21.7 13 0.00044 33.7 -1.2 49 84-132 166-216 (251)
95 1yg0_A COP associated protein; 21.6 1.6E+02 0.0053 18.4 5.4 26 2-27 19-46 (66)
96 2ctf_A Vigilin; K homology typ 20.5 1.9E+02 0.0063 22.5 5.5 42 2-48 49-91 (102)
97 3gr5_A ESCC; secretin, type II 20.3 3.7E+02 0.013 22.2 7.7 30 103-132 118-149 (156)
No 1
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=100.00 E-value=7.3e-47 Score=336.34 Aligned_cols=150 Identities=16% Similarity=0.349 Sum_probs=143.4
Q ss_pred HHHhhhccEEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCcc-ccChhhHhh
Q 021811 4 GALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL-VRNKERFVK 82 (307)
Q Consensus 4 ~~le~~~i~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~-~~nke~f~R 82 (307)
.+.+.+|+.|+||+.+|+|+|+||+.|+||++++||+|||+||+|||++++|++||+||++||+|+|+++ ++|++||+|
T Consensus 28 ~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r 107 (191)
T 1tua_A 28 EIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKR 107 (191)
T ss_dssp HHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHH
T ss_pred HHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccCcceeEEEEcccccccCchhHHH
Confidence 3445699999999999999999999999999999999999999999999999999999999999999999 789999999
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCceEEEecCCCcHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhhhc
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVYHIKILMVKKELEK 154 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~TVsIIG~~~~IkiAR~aIedlI~g~iH-pVY~ikelmiKReL~k 154 (307)
++|||||++|+|+++||++|||||+|+|+||+|||+|+++++||++|++||.|++| |||++++.+ ++||..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~~vy~~~~~~-~~~~k~ 179 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERI-MREIKR 179 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCCEEEEEeChHHHHHHHHHHHHHHcCCCchhHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 599999999 667743
No 2
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=100.00 E-value=4.9e-39 Score=290.49 Aligned_cols=149 Identities=22% Similarity=0.371 Sum_probs=136.6
Q ss_pred HHHHHhhhccEEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCcc-c-cChhh
Q 021811 2 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL-V-RNKER 79 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~-~-~nke~ 79 (307)
|..+.+++|+.|+||+.+|+|+|.+++.|+||.++++|+|+|++|+|||+|++|..||+||++||+|+|.++ + .++++
T Consensus 56 Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll~dd~~~e~i~i~~~~v~~~~~~ 135 (219)
T 2e3u_A 56 KKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNA 135 (219)
T ss_dssp HHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGGSTTCEEEEEEGGGCC------C
T ss_pred HHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceeccCCccceeEEcccccccCCchh
Confidence 456678899999999999999999999999999999999999999999999999999999999999999998 4 46788
Q ss_pred HhhhhccccCCCCchHHHHHHHhCceEEEeCceEEEecCCCcHHHHHHHHHHHhcCCCch-hHHHHHHHHHH
Q 021811 80 FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP-VYHIKILMVKK 150 (307)
Q Consensus 80 f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~TVsIIG~~~~IkiAR~aIedlI~g~iHp-VY~ikelmiKR 150 (307)
+.|.+|||||++|+|+++||++|||+|+|+|+||+|+|+|+++++||++|++||.|++|| ||++|+....|
T Consensus 136 ~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~~v~i~G~~~~i~~A~~~i~~li~g~~~~~vy~~l~~~~~~ 207 (219)
T 2e3u_A 136 LPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERRKKD 207 (219)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHCCEEEEETTEEEEEECHHHHHHHHHHHHHHHTTCCHHHHHHHHHHC---
T ss_pred hhhhhheeECCCchHHHHHHHHhCceEEECCeEEEEEeCHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999 99999987654
No 3
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.85 E-value=5.1e-09 Score=87.18 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=86.4
Q ss_pred HHHHHhhhccEEEEEcC-------CCeEEEEcCCCCCChHHHHhHHHHHHHHHcC-----CChHHHHhhhccCceeEE-E
Q 021811 2 VKGALKEYGVSCELNLV-------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS-----VPAPQAIKILDDEMQCDI-I 68 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~-------egsV~V~tt~kT~DP~~ilKArD~IkAIaRG-----F~~E~AlkLLeDd~~~dI-I 68 (307)
|+++-+++|+.+.++.. ++.|+|. .+|..+.+|+++|..+... |++. +++.... +
T Consensus 24 Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~ii~e~~~~~~~~~-------~~~~~~~~~ 91 (164)
T 2jvz_A 24 IKQLQERAGVKMILIQDGSQNTNVDKPLRII-----GDPYKVQQACEMVMDILRERDQGGFGDR-------NEYGSRIGG 91 (164)
T ss_dssp HHHHHHTSCSEEEECCCTTSSSSSCEEEEEE-----ECHHHHHHHHHHHHHHTTCSSSCCCSSC-------SSCTTSCSS
T ss_pred HHHHHHHhCCeEEEecCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHHhccCCCCCCc-------cccCCCCCc
Confidence 56777899999998643 2367775 4688999999999998873 3332 1111100 0
Q ss_pred EcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeC-------ceEEEecCCCcHHHHHHHHHHHhcC
Q 021811 69 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 69 dI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G-------~TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
.+.-.+. ....|+|||++|.|.+.|+..|||+|.|.. .+|.|.|+.+++..|+..|++++..
T Consensus 92 ~~~i~vp-----~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 92 GIDVPVP-----RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp SBCCEEE-----TTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEC-----hhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 0000111 136899999999999999999999999984 5799999999999999999999854
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.75 E-value=3e-08 Score=84.07 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=84.1
Q ss_pred HHHHHhhhccEEEEEcCC-----CeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChH---------HHHhhhccCc----
Q 021811 2 VKGALKEYGVSCELNLVE-----GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP---------QAIKILDDEM---- 63 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~e-----gsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E---------~AlkLLeDd~---- 63 (307)
|+++-+++++.+.++... +.|+|.. +|..+.+|.++|..+.+.+... .+...+.+++
T Consensus 25 Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 99 (174)
T 1j4w_A 25 IKKIQNDAGVRIQFKPDDGTTPERIAQITG-----PPDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGP 99 (174)
T ss_dssp HHHHHHHHCCEEEEECCTTSCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHhCCEEEEecCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCC
Confidence 567788999999998543 4677753 4789999999998887654210 0111111111
Q ss_pred ----eeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeC----------ceEEEecCCCcHHHHHHHH
Q 021811 64 ----QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG----------NTVAAMGSFKGLKQVRRIV 129 (307)
Q Consensus 64 ----~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G----------~TVsIIG~~~~IkiAR~aI 129 (307)
....+.|. + ...|+|||++|.|++.|+..|||+|.|.+ .+|.|.|+.+++..|+..|
T Consensus 100 ~~~~~~~~i~vp----~-----~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I 170 (174)
T 1j4w_A 100 PGGLQEFNFIVP----T-----GKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI 170 (174)
T ss_dssp ----CEEEEEEE----T-----TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHH
T ss_pred CCCcEEEEEEEC----h-----HHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHH
Confidence 11222222 1 35799999999999999999999999986 4699999999999999999
Q ss_pred HHHh
Q 021811 130 EDCM 133 (307)
Q Consensus 130 edlI 133 (307)
.++|
T Consensus 171 ~~~i 174 (174)
T 1j4w_A 171 EEKI 174 (174)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9875
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.67 E-value=1.2e-07 Score=80.57 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=86.7
Q ss_pred HHHHHhhhccEEEEEcCC--------CeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHH----hhhc-------cC
Q 021811 2 VKGALKEYGVSCELNLVE--------GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI----KILD-------DE 62 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~e--------gsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~Al----kLLe-------Dd 62 (307)
|+++-+++|+.+.++... ..|+|.. ++..+.+|.++|..+.+.++...+. .++. +.
T Consensus 28 Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (178)
T 2anr_A 28 IVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-----TIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR 102 (178)
T ss_dssp HHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-----CHHHHHHHHHHHHHHHTCCCCC-----------------CGG
T ss_pred HHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-----CHHHHHHHHHHHHHHHhccCCccccCCcccccCCccCCCCCC
Confidence 566778899999997532 3577764 4778999999999998887653221 1110 00
Q ss_pred ceeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeCc---------eEEEecCCCcHHHHHHHHHHHh
Q 021811 63 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN---------TVAAMGSFKGLKQVRRIVEDCM 133 (307)
Q Consensus 63 ~~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~---------TVsIIG~~~~IkiAR~aIedlI 133 (307)
.....+.|. ....|+|||++|++.+.|+..|||+|.|... +|.|.|+.+++..|+..|..++
T Consensus 103 ~~~~~i~Vp---------~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 173 (178)
T 2anr_A 103 ANQVKIIVP---------NSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKI 173 (178)
T ss_dssp GGEEEEEEE---------HHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEc---------hhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Confidence 011111111 1245999999999999999999999999865 7999999999999999999999
Q ss_pred cC
Q 021811 134 QN 135 (307)
Q Consensus 134 ~g 135 (307)
..
T Consensus 174 ~e 175 (178)
T 2anr_A 174 QE 175 (178)
T ss_dssp HS
T ss_pred Hh
Confidence 66
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.59 E-value=1.9e-07 Score=78.09 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=84.6
Q ss_pred HHHHHhhhccEEEEEcC------CCeEEEEcCCCCCChHHHHhHHHHHHHHHcCC---ChHHHHhhhccCc-eeEEEEcC
Q 021811 2 VKGALKEYGVSCELNLV------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV---PAPQAIKILDDEM-QCDIIKIG 71 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~------egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF---~~E~AlkLLeDd~-~~dIIdI~ 71 (307)
|.++-+++|+.+.++.. +..|+|. .+|..+.+|+.+|..+.... ++. ++. ...-+.|.
T Consensus 25 Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~-----G~~e~v~~A~~~I~~~~~e~~~~~~~-------~~~~~~~~i~vp 92 (163)
T 3krm_A 25 IKQLSRFASASIKIAPPETPDSKVRMVIIT-----GPPEAQFKAQGRIYGKLKEENFFGPK-------EEVKLETHIRVP 92 (163)
T ss_dssp HHHHHHHHTCEEEECCCSSTTCSEEEEEEE-----ECHHHHHHHHHHHHHHHHHTTSSCSS-------CCCCEEEEEEEE
T ss_pred HHHHHHHHCCeEEEcCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHhcccccccc-------cCCceEEEEEcC
Confidence 56677889999998763 2347775 46889999998887654321 111 111 11123332
Q ss_pred ccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeCc---------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 72 NLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN---------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 72 ~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~---------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
. ...|+|||++|.+.+.|...|||.|.|.+. +|.|.|+.+++..|+..|.+++..
T Consensus 93 ~---------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 93 A---------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp T---------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred h---------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 1 468999999999999999999999999876 799999999999999999999854
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.49 E-value=7.5e-07 Score=74.21 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=82.0
Q ss_pred HHHHHhhhccEEEEEcCC---CeEEEEcCCCCCChHHHHhHHHHHHHHH-c----CCChHHHHhhhccCceeEEEEcCcc
Q 021811 2 VKGALKEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLS-R----SVPAPQAIKILDDEMQCDIIKIGNL 73 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~e---gsV~V~tt~kT~DP~~ilKArD~IkAIa-R----GF~~E~AlkLLeDd~~~dIIdI~~~ 73 (307)
|.++-+++|+.+.++... +.|+|.. ++..+.+|+.+|..+. . +++...+ .........+.|.
T Consensus 27 Ik~i~~~tg~~I~i~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~e~~~~~~~~~~~---~~~~~~~~~i~vp-- 96 (160)
T 2jzx_A 27 VKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLEEDISSSMTNSTA---ASRPPVTLRLVVP-- 96 (160)
T ss_dssp HHHHHHHHCSEEEEECCTTTEEEEEEEE-----EHHHHHHHHHHHHHHHHHHHTSCCCSSSC---CCCCSEEEEEEEE--
T ss_pred HHHHHHHHCCEEEEcCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHHhhccccCCCCcc---CCCCCEEEEEEEC--
Confidence 567778999999998752 3778764 3778999999876432 1 1110000 0001111122222
Q ss_pred ccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeC--------ceEEEecCCCcHHHHHHHHHHHhc
Q 021811 74 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG--------NTVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 74 ~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G--------~TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
....|+|||++|++.+.|+..|||.|.|.+ .+|.|.|+.+++..|+..|+.++.
T Consensus 97 -------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 97 -------ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVML 158 (160)
T ss_dssp -------HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred -------hhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 146799999999999999999999999985 679999999999999999988863
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.47 E-value=1.1e-07 Score=71.07 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=48.2
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc----------eEEEecCCCcHHHHHHHHHHHhc
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~----------TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
..|+|||++|+|++.|+..|||.|.|.+. +|.|.|+.+++..|+..|++++.
T Consensus 13 ~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred HcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999963 79999999999999999999874
No 9
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.39 E-value=1.8e-07 Score=72.05 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=49.0
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc----------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~----------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
..|+|||++|.|++.|+..|||.|.|.+. +|.|.|+.+++..|+..|++++..
T Consensus 13 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999963 799999999999999999999853
No 10
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.36 E-value=2.9e-07 Score=70.76 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=47.8
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-e--------EEEecCCCcHHHHHHHHHHHhc
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-T--------VAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-T--------VsIIG~~~~IkiAR~aIedlI~ 134 (307)
..|+|||++|+|++.|+..|||.|.|.+. + |.|.|+.+++..|+..|++++.
T Consensus 24 ~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 24 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999999863 3 9999999999999999999873
No 11
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.33 E-value=4.1e-07 Score=71.07 Aligned_cols=53 Identities=11% Similarity=0.381 Sum_probs=49.5
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
..|+|||++|.|++.|+..|||+|.|.+. +|.|.|+.+++..|+..|++++..
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 25 MVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999985 799999999999999999999843
No 12
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.32 E-value=3.3e-07 Score=68.85 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=48.5
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC-------ceEEEecCCCcHHHHHHHHHHHhc
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G-------~TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
..|+|||++|.+.+.|+..|||+|.|.+ .+|.|.|+.+++..|+..|..++.
T Consensus 15 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 15 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999996 569999999999999999999885
No 13
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=2.2e-07 Score=78.01 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=55.3
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-----------------------eEEEec-CCCcHHHHHHHHHHHhcCCC-
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-----------------------TVAAMG-SFKGLKQVRRIVEDCMQNKM- 137 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-----------------------TVsIIG-~~~~IkiAR~aIedlI~g~i- 137 (307)
.+||||||+|+|.+.||.-|||.|.|.|+ +|.|.| +.+.+..|...|+.|+.-.+
T Consensus 23 ~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~~~~ 102 (131)
T 1k1g_A 23 FVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIE 102 (131)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTTTTS
T ss_pred eeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhccCC
Confidence 67999999999999999999999999873 688888 46778999999999996522
Q ss_pred ch-hHHHHHHHHHHhhh
Q 021811 138 HP-VYHIKILMVKKELE 153 (307)
Q Consensus 138 Hp-VY~ikelmiKReL~ 153 (307)
.| -++.+....-|||+
T Consensus 103 ~p~~~d~~k~~Ql~eLa 119 (131)
T 1k1g_A 103 TPEDQNDLRKMQLRELA 119 (131)
T ss_dssp CCTTSSGGGGGGGHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 23 34444444445665
No 14
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.31 E-value=4.3e-07 Score=71.91 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=54.7
Q ss_pred CceeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeCc------eEEEecCCCcHHHHHHHHHHHhc
Q 021811 62 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN------TVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 62 d~~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~------TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
+.+...+.|.. ...++|||++|+|++.|+..|||+|.|.+. +|.|.|+.+++..|+..|++|+.
T Consensus 15 ~~vt~~i~Ip~---------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 15 QMVSEDVPLDH---------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEE 84 (95)
T ss_dssp TCCCEEEECCT---------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECH---------HHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 34455566653 357899999999999999999999999876 79999999999999999999863
No 15
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.31 E-value=7.6e-07 Score=71.55 Aligned_cols=55 Identities=15% Similarity=0.373 Sum_probs=50.6
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc----------eEEEecCCCcHHHHHHHHHHHhcCCC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQNKM 137 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~----------TVsIIG~~~~IkiAR~aIedlI~g~i 137 (307)
..|+|||++|+|++.|+..|||+|.|.+. +|.|.|+.+++..|+..|++++....
T Consensus 17 ~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 17 KCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred HcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 67999999999999999999999999874 69999999999999999999997643
No 16
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.28 E-value=1e-06 Score=75.24 Aligned_cols=82 Identities=24% Similarity=0.233 Sum_probs=64.1
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-------------------------eEEEecC-CC-----cHHHHHHHHHH
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-------------------------TVAAMGS-FK-----GLKQVRRIVED 131 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-------------------------TVsIIG~-~~-----~IkiAR~aIed 131 (307)
.+||||||.|.|.+.||..|||.|.|.|+ +|.|.|+ ++ .|..|.+.|++
T Consensus 18 fiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~ 97 (140)
T 2bl5_A 18 FVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKK 97 (140)
T ss_dssp HHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHH
T ss_pred eeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999983 7888884 33 58889999999
Q ss_pred HhcCCCchhHHHHHHHHHHhhhc-Ccccccccccc
Q 021811 132 CMQNKMHPVYHIKILMVKKELEK-DPALANENWDR 165 (307)
Q Consensus 132 lI~g~iHpVY~ikelmiKReL~k-d~~l~~e~W~r 165 (307)
|+.- .|.-++.+....-|||+- +..++..+|-+
T Consensus 98 lL~p-~~e~~de~K~~QL~eLA~lNGt~r~~~~~~ 131 (140)
T 2bl5_A 98 LLVP-AAEGEDSLKKMKLMELAILNGTYRDANLKS 131 (140)
T ss_dssp HSSC-CSSSSSHHHHHHHTGGGSSSTTTSGGGGSC
T ss_pred HCCC-CCcchhHHHHHHHHHHHHhcCCcCCCcccc
Confidence 8876 554555555566678874 45677666654
No 17
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.27 E-value=1.5e-06 Score=68.16 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=49.4
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEeCc---------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQGN---------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~---------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
...|+|||++|.|++.|+..|||+|.|.+. .|.|.|+.+++..|+..|++++..
T Consensus 24 ~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 24 SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 367999999999999999999999999863 299999999999999999999965
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.26 E-value=7.6e-07 Score=67.97 Aligned_cols=52 Identities=10% Similarity=0.302 Sum_probs=48.4
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-------eEEEecCCCcHHHHHHHHHHHhc
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-------TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
..|+|||++|++++.|+..|||.|.|.+. +|.|.|+.+++..|+..|..++.
T Consensus 17 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 17 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp TGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999974 79999999999999999999874
No 19
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.24 E-value=9.3e-07 Score=66.14 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=46.5
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-----eEEEecCCCcHHHHHHHHHHHh
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCM 133 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-----TVsIIG~~~~IkiAR~aIedlI 133 (307)
..++|||++|++.+.|+.-|||.|.|.+. +|.|.|+.+++..|+..|..+.
T Consensus 15 ~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 15 FHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred HhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999864 8999999999999999888764
No 20
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.20 E-value=8.2e-07 Score=70.79 Aligned_cols=53 Identities=11% Similarity=0.268 Sum_probs=49.3
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC---------ceEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG---------NTVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G---------~TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
..|+|||++|.|++.|+..|||+|.|.+ .+|.|.|+.+++..|+..|+.++..
T Consensus 25 ~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 25 SVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 6799999999999999999999999995 5699999999999999999999865
No 21
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=8.7e-07 Score=73.57 Aligned_cols=56 Identities=23% Similarity=0.485 Sum_probs=49.3
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-----------------eEEEecC-CCcHHHHHHHHHHHhcCCCch
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-----------------TVAAMGS-FKGLKQVRRIVEDCMQNKMHP 139 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-----------------TVsIIG~-~~~IkiAR~aIedlI~g~iHp 139 (307)
.+|+||||+|+|++.|+.-|||.|.|.|+ +|.|.++ .+.++.|+..|++|+.- +|.
T Consensus 29 ~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~-v~~ 102 (119)
T 2yqr_A 29 VKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQT-VHA 102 (119)
T ss_dssp HHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHHH-HHH
T ss_pred eeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhhc-hHH
Confidence 68999999999999999999999999865 7999865 67799999999999876 454
No 22
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.18 E-value=9.8e-07 Score=68.42 Aligned_cols=52 Identities=10% Similarity=0.309 Sum_probs=48.4
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC-------ceEEEecCCCcHHHHHHHHHHHhc
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G-------~TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
..|+|||++|.|++.|+..|||.|.|.+ .+|.|.|+.+++..|+..|+.++.
T Consensus 24 ~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 24 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999997 569999999999999999999874
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.15 E-value=1.5e-06 Score=66.24 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=48.4
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
..|+|||++|++.+.|+..|||.|.|.+. +|.|.|+.+++..|+..|..++..
T Consensus 16 ~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 16 LIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSS 75 (82)
T ss_dssp GHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC-
T ss_pred hccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999873 699999999999999999999865
No 24
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.13 E-value=1.5e-06 Score=69.76 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=49.5
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEeCc-----eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~-----TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
...++|||++|+|.+.|+.-|||.|.|.+. +|.|.|+.+++..|+..|+.++.-
T Consensus 26 ~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 26 DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 357899999999999999999999999876 899999999999999999998754
No 25
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.09 E-value=6.5e-06 Score=69.15 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=72.0
Q ss_pred HHHHHhhhccEEEEEcC-CCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCccccChhhH
Q 021811 2 VKGALKEYGVSCELNLV-EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 80 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~-egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~~~nke~f 80 (307)
|+.+.+++|+.+-.... ...+.+. +..|..+.+|+.++. +. + ..+ ++.+
T Consensus 26 I~~i~~e~gI~ii~~~~~~~~~i~~----~~~p~~v~~~~~~l~-------------~~--e---~~v----~Vp~---- 75 (144)
T 2qnd_A 26 IQQARKVPGVTAIDLDEDTCTFHIY----GEDQDAVKKARSFLE-------------FA--E---DVI----QVPR---- 75 (144)
T ss_dssp HHHHHTSTTEEEEEEETTTTEEEEE----ESSHHHHHHHHHHHC-------------EE--E---EEE----EEEG----
T ss_pred HHHHHHHHCCeEeccCCCchheeec----cCCHHHHHHHHHhhh-------------cc--e---EEE----EECH----
Confidence 56777888865533333 3334443 367777777765432 00 1 111 1222
Q ss_pred hhhhccccCCCCchHHHHHHHhCc-eEEEeCc------------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 81 VKRRQHLVGPNSSTLKALEILTGC-YILVQGN------------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 81 ~RrrgRIIG~~GkTkkaIE~LT~~-yI~V~G~------------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
...|++||++|.|.+-|..+||| +|.|.+. +|.|+|+.+++..|+..|+++|..
T Consensus 76 -~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 76 -NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp -GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred -HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999997 9999852 388999999999999999999864
No 26
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.08 E-value=2.8e-06 Score=67.30 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=52.5
Q ss_pred eeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeCc--------eEEEecCCCcHHHHHHHHHHHh
Q 021811 64 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN--------TVAAMGSFKGLKQVRRIVEDCM 133 (307)
Q Consensus 64 ~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~--------TVsIIG~~~~IkiAR~aIedlI 133 (307)
+...|.|.. ...++|||++|+|.+.|...|||+|.|.+. +|.|.|+.+++..|+..|..++
T Consensus 17 ~~~~i~Ip~---------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 17 FKLSVTVDP---------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIV 85 (97)
T ss_dssp CEEEEECCT---------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHH
T ss_pred eeEEEEECH---------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHH
Confidence 456666664 257899999999999999999999999753 7999999999999999999886
No 27
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.07 E-value=2.8e-06 Score=68.60 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=48.3
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc-------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~-------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
..++|||++|+|++.|+..|+|.|.|... +|.|.|+.+++..|+..|++++..
T Consensus 21 ~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 21 SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999842 599999999999999999999843
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.06 E-value=2.5e-06 Score=63.95 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=48.6
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEeCc-----eEEEecCCCcHHHHHHHHHHHhc
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~-----TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
...|.|||++|.+.+.|...|||.|.|.+. .|.|.|+.+++..|...|.++|.
T Consensus 14 ~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 357999999999999999999999999986 59999999999999999998874
No 29
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.99 E-value=2.8e-06 Score=66.64 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=47.5
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC-----ceEEEecCCCcHHHHHHHHHHHhc
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG-----NTVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G-----~TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
..|.|||++|.|++.|+.-|||.|.|.+ .+|.|.|+.+++..|+..|..++.
T Consensus 27 ~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 27 HHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISA 83 (94)
T ss_dssp THHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999973 579999999999999999988873
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=1.4e-05 Score=62.00 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=47.8
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEe----CceEEEecCCCcHHHHHHHHHHHhc
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQ----GNTVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~----G~TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
...|-|||++|.|.+.|+..|||+|.|. +..|.|.|+.+++..|+..|+.++.
T Consensus 19 ~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 19 RVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp HHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred HHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999998 2469999999999999999999873
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.67 E-value=3e-05 Score=64.26 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=48.0
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC---------ceEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG---------NTVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G---------~TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
..|+|||++|.|.+.|+..|||.|.|.. ..|.|.|+.+++..|+..|..+|..
T Consensus 12 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 12 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 73 (164)
T ss_dssp CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTC
T ss_pred heeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999852 2699999999999999999999975
No 32
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.64 E-value=2.7e-05 Score=64.70 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=47.2
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEeCc-----eEEEecCCCcHHHHHHHHHHHhc
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~-----TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
...|+|||++|.+.+.|+..|||+|.|.+. +|.|.|+.+++..|+..|.++|.
T Consensus 14 ~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (160)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999875 79999999999999988877663
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.50 E-value=6e-05 Score=63.69 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=48.1
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC-------ceEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G-------~TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
..|+|||++|.+.+.|+..|||+|.|.. ..|.|.|+.+++..|+..|..++..
T Consensus 13 ~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 13 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRS 72 (174)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred heeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999974 2689999999999999999998854
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.49 E-value=7.9e-05 Score=63.07 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=50.2
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEeCc----------eEEEecCCCcHHHHHHHHHHHhcCCCc
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQNKMH 138 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~G~----------TVsIIG~~~~IkiAR~aIedlI~g~iH 138 (307)
...|+|||++|.+.+.|+..|||+|.|... .|.|.|+.+++..|+..|..++....+
T Consensus 15 ~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 15 YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 367999999999999999999999999753 588999999999999999999976443
No 35
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.48 E-value=0.00014 Score=57.59 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=53.7
Q ss_pred cCceeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHh-CceEEEeC-c----eEEEecCCCcHHHHHHHHHHHhc
Q 021811 61 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT-GCYILVQG-N----TVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 61 Dd~~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT-~~yI~V~G-~----TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
+++.-+.|.|.. ...+.|||++|++++.|+.-| ||.|.|.+ . +|.|.|+-.++..|+..|+.++.
T Consensus 14 ~~~vt~~i~Ip~---------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 14 ANIAEVEVSIPA---------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CSSCCEEEECCH---------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECH---------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 444455565553 346789999999999999999 99999985 3 89999999999999999998874
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.39 E-value=8.6e-05 Score=61.86 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=47.5
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc--------eEEEecCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN--------TVAAMGSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~--------TVsIIG~~~~IkiAR~aIedlI~g 135 (307)
.-|.|||++|.+.+.|+..|||.|.|... .|.|.|+.+++..|+..|.++|..
T Consensus 13 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e 73 (163)
T 3krm_A 13 AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKE 73 (163)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999763 499999999999999998888854
No 37
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.01 E-value=0.00019 Score=57.25 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=42.5
Q ss_pred hhccccCCCCchHHHHHHHhCce-EEEeC--ceEEEec-CCCcHHHHHHHHHHH
Q 021811 83 RRQHLVGPNSSTLKALEILTGCY-ILVQG--NTVAAMG-SFKGLKQVRRIVEDC 132 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~y-I~V~G--~TVsIIG-~~~~IkiAR~aIedl 132 (307)
..+-+||++|+|.+.|...|||. |.|.+ .||.|.| +.+.++.|+..|+.+
T Consensus 25 kIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 25 LMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp HHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred HhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 57889999999999999999998 99993 8899999 666777777776544
No 38
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.84 E-value=0.00091 Score=53.48 Aligned_cols=52 Identities=10% Similarity=0.233 Sum_probs=46.8
Q ss_pred hhccccCCCCchHHHHHH-HhCceEEEe--CceEEEecCCCcHHHHHHHHHHHhc
Q 021811 83 RRQHLVGPNSSTLKALEI-LTGCYILVQ--GNTVAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~-LT~~yI~V~--G~TVsIIG~~~~IkiAR~aIedlI~ 134 (307)
..+.|||++|.+++-|+. .|+|.|.+- ++.|.|-|+.+++..|+..|+.++.
T Consensus 37 ~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 37 LHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp THHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 457899999999999999 689999998 5679999999999999999988874
No 39
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.51 E-value=0.00093 Score=68.52 Aligned_cols=51 Identities=24% Similarity=0.405 Sum_probs=42.2
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC-ceEEEecCC-CcHHHHHHHHHHHh
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG-NTVAAMGSF-KGLKQVRRIVEDCM 133 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G-~TVsIIG~~-~~IkiAR~aIedlI 133 (307)
.+++|||++|+|.+.|+.-|||.|.|.+ .+|.|.|+- +.+..|++.|+.++
T Consensus 577 kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 577 KRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred HhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999975 679999975 45777777776554
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=95.91 E-value=0.0075 Score=54.31 Aligned_cols=55 Identities=22% Similarity=0.145 Sum_probs=48.9
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEe--CceEEEecCC-----CcHHHHHHHHHHHhcCC
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQ--GNTVAAMGSF-----KGLKQVRRIVEDCMQNK 136 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~--G~TVsIIG~~-----~~IkiAR~aIedlI~g~ 136 (307)
.+.|-|||++|+|.+.|+.-|||.|-|. +.+|.|-|+- +.+.-|++.|..++.|.
T Consensus 43 ~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~ 104 (219)
T 2e3u_A 43 DRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGF 104 (219)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccC
Confidence 3678899999999999999999999998 3679888865 88999999999999883
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.22 E-value=0.0079 Score=58.45 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=56.9
Q ss_pred HcCCChHHHHhhhccC--ceeEEEEcCccccChhhHhhhhccccCCCC--chHHHHHHHhCceEEEeC------------
Q 021811 47 SRSVPAPQAIKILDDE--MQCDIIKIGNLVRNKERFVKRRQHLVGPNS--STLKALEILTGCYILVQG------------ 110 (307)
Q Consensus 47 aRGF~~E~AlkLLeDd--~~~dIIdI~~~~~nke~f~RrrgRIIG~~G--kTkkaIE~LT~~yI~V~G------------ 110 (307)
+-|.|..--+-+|++. -+..-++|.. .--..|||++| .+.+-|-.-|||.|-+-+
T Consensus 11 ~~~~~~~~~~~~le~~~~~VTl~v~Ip~---------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks 81 (376)
T 3n89_A 11 AQGLPLPSNIPMIEINPTRVTLNMEFES---------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFA 81 (376)
T ss_dssp --CCSBCCCSCCCCCCTTEEEEEEECCG---------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTT
T ss_pred hcCCCCCccceEEEecCCEEEEEEEEch---------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCC
Confidence 3466666556666542 2233344442 23457999999 999999999999999954
Q ss_pred ceEEEecCCCcHHHHHHHHHHH
Q 021811 111 NTVAAMGSFKGLKQVRRIVEDC 132 (307)
Q Consensus 111 ~TVsIIG~~~~IkiAR~aIedl 132 (307)
+.|.|-|..++++.||..|.+|
T Consensus 82 ~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 82 QQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHS
T ss_pred CeEEEEcCHHHHHHHHHHHHhc
Confidence 2499999999999999999986
No 42
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=94.43 E-value=0.024 Score=55.04 Aligned_cols=127 Identities=16% Similarity=0.158 Sum_probs=82.3
Q ss_pred HHHHHhhhccEEEEEcC----------CCeEEEEcCCCCCChHHHHhHHHHHHHHH----------cCCChHHHHhhhc-
Q 021811 2 VKGALKEYGVSCELNLV----------EGSMTVSTTRKTRDPYIIVKARDLIRLLS----------RSVPAPQAIKILD- 60 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~----------egsV~V~tt~kT~DP~~ilKArD~IkAIa----------RGF~~E~AlkLLe- 60 (307)
|+++.+++++.|.+--. ...|+|. ..|..+-+||..|.++. .+++..+--.++.
T Consensus 54 IkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtIt-----G~~enVE~AR~~I~~l~Pl~i~~elp~~~i~~~~l~~~I~q 128 (376)
T 3n89_A 54 VASIMAETNTLIQLPDRSVGGTTPDPFAQQVTIT-----GYFGDVDRARMLMRRNCHFTVFMALSKMKMPLHELQAHVRQ 128 (376)
T ss_dssp HHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEE-----EEHHHHHHHHHHHHHSCEEEEEEECTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCeEECCCCcccccCCcCCCCeEEEE-----cCHHHHHHHHHHHHhcCCceEEEEccccccCcchhhhhhcc
Confidence 78899999999998322 2347775 56789999999998741 0111111001111
Q ss_pred -cCce---------------eEEEEcCccccChhh-------Hh----------------------hhhccccCCCC--c
Q 021811 61 -DEMQ---------------CDIIKIGNLVRNKER-------FV----------------------KRRQHLVGPNS--S 93 (307)
Q Consensus 61 -Dd~~---------------~dIIdI~~~~~nke~-------f~----------------------RrrgRIIG~~G--k 93 (307)
+.+- .|.|-|.....|-+. +. ....+|||++| .
T Consensus 129 q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~ 208 (376)
T 3n89_A 129 NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPAPENNFTLHFTLSTYYVDQVLGSSSTAQ 208 (376)
T ss_dssp CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CCCSSCEEEEEEEEGGGHHHHTCCTTSCC
T ss_pred ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcccccceEEEEEeCHHHHHHhhcCCCcch
Confidence 1111 344545443322111 11 12357999999 5
Q ss_pred hHHHHHHHhCceEEEeC-----------ceEEEecCCCcHHHHHHHHHHHh
Q 021811 94 TLKALEILTGCYILVQG-----------NTVAAMGSFKGLKQVRRIVEDCM 133 (307)
Q Consensus 94 TkkaIE~LT~~yI~V~G-----------~TVsIIG~~~~IkiAR~aIedlI 133 (307)
+.+-|..-|||.|.+=+ .+|.|.|+.+++..||+.|..|+
T Consensus 209 ~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 209 LMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp HHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 66999999999999763 25999999999999999999876
No 43
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=93.08 E-value=0.014 Score=60.86 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=9.4
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC-ceEEEecCC-CcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG-NTVAAMGSF-KGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G-~TVsIIG~~-~~IkiAR~aIedlI~g 135 (307)
.++.+|||+|+|.+.|..-|||.|.|.+ .+|.|.++- +.+..|+..|+.+...
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ----------------------------------CCSCHHHHHHHHHC-------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999986 668888763 4468888888887743
No 44
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=92.64 E-value=0.097 Score=44.86 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=49.9
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEe-----Cce-EEEecCCCcHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQ-----GNT-VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKE 151 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~-----G~T-VsIIG~~~~IkiAR~aIedlI~g~iHpVY~ikelmiKRe 151 (307)
.-++|+|++|.-+..||.+|++-|-|. |.| |-|.|++.-=.-|...|..+.. |+...+|.+--
T Consensus 66 lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~------~hr~~~~~~~~ 134 (140)
T 3v69_A 66 LLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH------YCRMKLMEIEA 134 (140)
T ss_dssp GHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHH------HHHHHHHHHC-
T ss_pred hhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 578999999999999999999999996 344 9999999887777777777664 45556665533
No 45
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=92.24 E-value=0.092 Score=46.50 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=48.2
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCc--eEEEe-----cCCCcHHHHHHHHHHHhcC
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGN--TVAAM-----GSFKGLKQVRRIVEDCMQN 135 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~--TVsII-----G~~~~IkiAR~aIedlI~g 135 (307)
+-|=|||..|.|.+.|+..+||.|-++.+ .|.+- |++..+.-|++.|..++.|
T Consensus 14 rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 14 RLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999964 58887 8888899999999999999
No 46
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=88.31 E-value=0.16 Score=46.16 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=61.3
Q ss_pred hccccCCCCchHHHHHHHhCceEEEe-Cce--EEE-ecCCCc------HHHHHHHHHHHh-cCCCc---hhHHHHHHHHH
Q 021811 84 RQHLVGPNSSTLKALEILTGCYILVQ-GNT--VAA-MGSFKG------LKQVRRIVEDCM-QNKMH---PVYHIKILMVK 149 (307)
Q Consensus 84 rgRIIG~~GkTkkaIE~LT~~yI~V~-G~T--VsI-IG~~~~------IkiAR~aIedlI-~g~iH---pVY~ikelmiK 149 (307)
-|+|||++|.|+.||+.||+..+.-. |.. |.+ +|.|.. ...|.+++.... .|.+. |+-.+=+.++-
T Consensus 103 ~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH 182 (225)
T 3gku_A 103 MGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRERRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIH 182 (225)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHH
T ss_pred cceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHHHHHHHHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHH
Confidence 68999999999999999999776543 433 443 566644 277888888888 67543 67777788999
Q ss_pred HhhhcCccccccc
Q 021811 150 KELEKDPALANEN 162 (307)
Q Consensus 150 ReL~kd~~l~~e~ 162 (307)
.-|..+|.+.++|
T Consensus 183 ~al~~~~~V~T~S 195 (225)
T 3gku_A 183 AALQNDKYVVTRS 195 (225)
T ss_dssp HHTTTCSSEEEEE
T ss_pred HHHccCCCcEEEE
Confidence 9999999988776
No 47
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=84.10 E-value=0.49 Score=37.50 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=41.2
Q ss_pred HHHHHhhhccE-EEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHH
Q 021811 2 VKGALKEYGVS-CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 54 (307)
Q Consensus 2 v~~~le~~~i~-i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~ 54 (307)
|+++-+.+|+. +.++-.+|.|+|.. .|+-.+.+|+++|..+--.|.+++
T Consensus 37 Ik~I~e~tGv~~IdI~eddG~V~I~g----~~~ea~~~A~~~I~~ie~~~~vp~ 86 (91)
T 2cpq_A 37 IQQARKVPGVTAIELDEDTGTFRIYG----ESADAVKKARGFLEFVEDFIQVPS 86 (91)
T ss_dssp HHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHSCCCCCCCCCS
T ss_pred HHHHHHHhCCeEEEEEcCCCEEEEEE----CCHHHHHHHHHHHHhhheEEecCh
Confidence 57788999997 99997779999986 688899999999998877776654
No 48
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=73.39 E-value=1.1 Score=38.49 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHHcCCChHH-HHhhh-ccCceeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEe-Cce
Q 021811 36 IVKARDLIRLLSRSVPAPQ-AIKIL-DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-GNT 112 (307)
Q Consensus 36 ilKArD~IkAIaRGF~~E~-AlkLL-eDd~~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~-G~T 112 (307)
+-.+.+++.-|...+.++- ++.+. .|+- .-.|+|.. + -=|.|||+.|.|+.||+-|++-.+.=. +-.
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~-~i~i~i~g-----e----d~glLIGK~G~TL~ALQyL~~~~vn~~~~~~ 73 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPG-VLLIDIDG-----E----DSALLIGEKGYRYKALSYLLFNWIHPTYGYS 73 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETT-EEEEEEEE-----G----GGTTTTCGGGHHHHHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCC-EEEEEEec-----C----CcceEECCCCcchHHHHHHHHHHhhhcCCce
Confidence 3456778877776666642 24442 2221 12233332 1 258999999999999999996554432 323
Q ss_pred EEE-ecCCCc------HHHHHHHHHHHh
Q 021811 113 VAA-MGSFKG------LKQVRRIVEDCM 133 (307)
Q Consensus 113 VsI-IG~~~~------IkiAR~aIedlI 133 (307)
|-+ ++.|.. -..|.++.+...
T Consensus 74 V~LDve~YRerReetL~~lA~~~A~kV~ 101 (152)
T 2pt7_G 74 IRLEISTFLQNQEKVMDTQLQSVIMTVH 101 (152)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444 555543 145556665555
No 49
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=72.42 E-value=1.3 Score=36.73 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=33.1
Q ss_pred hhhccccCCCCchHHHHHHHhCceEEEeC---ceEEEec-CCCcHHHHHH
Q 021811 82 KRRQHLVGPNSSTLKALEILTGCYILVQG---NTVAAMG-SFKGLKQVRR 127 (307)
Q Consensus 82 RrrgRIIG~~GkTkkaIE~LT~~yI~V~G---~TVsIIG-~~~~IkiAR~ 127 (307)
..-|.+||++|.+.+.|...+|+.|..+. .++.+.| +++.+..|+.
T Consensus 13 ~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~~~p~~v~~~~~ 62 (144)
T 2qnd_A 13 DLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARS 62 (144)
T ss_dssp GGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred cceeeEECCChhHHHHHHHHHCCeEeccCCCchheeeccCCHHHHHHHHH
Confidence 35789999999999999999997776653 2344444 4566655554
No 50
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=64.24 E-value=1.4 Score=45.93 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred hccccCCCCchHHHHHHHhCceEEEeC-ceEEEecC-CCcHHHHHHHHHHHh
Q 021811 84 RQHLVGPNSSTLKALEILTGCYILVQG-NTVAAMGS-FKGLKQVRRIVEDCM 133 (307)
Q Consensus 84 rgRIIG~~GkTkkaIE~LT~~yI~V~G-~TVsIIG~-~~~IkiAR~aIedlI 133 (307)
++.+||++|+|.+.|..-||+.|-|.+ .+|.|.+. ...++.|++.|+.++
T Consensus 571 i~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 571 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp ----------------------------------------------------
T ss_pred hcccccccceeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHh
Confidence 458999999999999999999999997 45777664 445666776666654
No 51
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=64.07 E-value=13 Score=27.82 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=33.2
Q ss_pred HHHHHhhhccEEEEEcCCCe--------EEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLVEGS--------MTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~egs--------V~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|..+-+++|+.+.++- +|+ |+|. .+|..+.+|.++|.+|.+
T Consensus 36 Ik~I~~~tga~I~i~~-~~~~~~~~er~v~I~-----G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 36 IKQLQERAGVKMILIQ-DGSQNTNVDKPLRII-----GDPYKVQQACEMVMDILR 84 (85)
T ss_dssp HHHHHHHHTCEEEECS-SSCSSTTSCEEEEEE-----ECHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCEEEEcC-CCCCCCCCceEEEEE-----eCHHHHHHHHHHHHHHhc
Confidence 5667788999999986 455 8876 388999999999998853
No 52
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=63.97 E-value=16 Score=32.26 Aligned_cols=111 Identities=9% Similarity=0.127 Sum_probs=68.3
Q ss_pred HHhhhccEEEEEcC-CCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChH-----HHHhhh---------------ccCc
Q 021811 5 ALKEYGVSCELNLV-EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP-----QAIKIL---------------DDEM 63 (307)
Q Consensus 5 ~le~~~i~i~lDl~-egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E-----~AlkLL---------------eDd~ 63 (307)
+-+.+|+.+-+|.. .|.|++.+ .||+.-..+.+++..+.+...+. ..+.+. .+++
T Consensus 38 la~~~g~nivvdp~V~G~VTl~~----~~pv~~~~~~~~l~~vL~~~gl~~~~~g~v~~V~p~~~~~~~~~~~~~~~~~~ 113 (246)
T 4e9j_A 38 ISEITGETFVVDPRVKGQVSVVS----KAQLSLSEVYQLFLSVMSTHGFTVVAQGDQARIVPNAEAKTEAGGGQSAPDRL 113 (246)
T ss_dssp HHHHHCCCEEECTTCCCEEEEEE----EEEEEHHHHHHHHHHHHHHTTEEEEECSSSEEEEECC-----------CCSCC
T ss_pred HHHHhCCeEEECCCCceEEEEEe----CCCCCHHHHHHHHHHHHHHCCCEEEEeCCEEEEeehhhhhccccccccCCCcc
Confidence 34678888889885 89999986 44444445555555444332221 001111 1334
Q ss_pred eeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEeC--ceEEEecCCCcHHHHHHHHHHHh
Q 021811 64 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG--NTVAAMGSFKGLKQVRRIVEDCM 133 (307)
Q Consensus 64 ~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~G--~TVsIIG~~~~IkiAR~aIedlI 133 (307)
...+|.|... +-+.+......++.+ ++.|.++. |++-+-|+...|..+++.|..+=
T Consensus 114 ~t~vi~L~~~--~a~~l~~~L~~lls~------------~g~v~~d~~tN~Liv~g~~~~i~~i~~li~~lD 171 (246)
T 4e9j_A 114 ETRVIQVQQS--PVSELIPLIRPLVPQ------------YGHLAAVPSANALIISDRSANIARIEDVIRQLD 171 (246)
T ss_dssp EEEEEECSSS--CHHHHHHHHGGGSCT------------TSEEEEEGGGTEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCC--CHHHHHHHHHHhcCC------------CceEEEcCCCCEEEEEcCHHHHHHHHHHHHHhc
Confidence 4556666543 234555554445543 36778875 67999999999999999999874
No 53
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=62.36 E-value=38 Score=29.78 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=72.7
Q ss_pred ccEEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCccccChhhHhhhhccccC
Q 021811 10 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVG 89 (307)
Q Consensus 10 ~i~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~~~nke~f~RrrgRIIG 89 (307)
...+..|..++++.|. ..|..+-+++++|+.|-.-.. ...++|.|..- +-+.+...-..+.|
T Consensus 139 ~g~v~~d~~tN~Liv~-----g~~~~i~~i~~li~~lD~p~~-----------~~~~vi~l~~a--~A~dl~~~L~~~~~ 200 (246)
T 4e9j_A 139 YGHLAAVPSANALIIS-----DRSANIARIEDVIRQLDQKGS-----------HDYSVINLRYG--WVMDAAEVLNNAMS 200 (246)
T ss_dssp TSEEEEEGGGTEEEEE-----ECHHHHHHHHHHHHHHHTCSC-----------CCEEEEECSSS--CHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCEEEEE-----cCHHHHHHHHHHHHHhccccc-----------cceEEEEecCC--CHHHHHHHHHHHhc
Confidence 3578899999999886 567899999999999886543 24788888863 44566666666655
Q ss_pred CCCchHHHHHHHhCceEEEeC--ceEEEecCCCcHHHHHHHHHHH
Q 021811 90 PNSSTLKALEILTGCYILVQG--NTVAAMGSFKGLKQVRRIVEDC 132 (307)
Q Consensus 90 ~~GkTkkaIE~LT~~yI~V~G--~TVsIIG~~~~IkiAR~aIedl 132 (307)
.+|.. .-.+..|+.+. |++-|.|+.+.+..++..|..|
T Consensus 201 ~~~~~-----~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 201 RGQAK-----GAAGAQVIADARTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp HTCST-----TCTTCEEEEEGGGTEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCCC-----CCCceEEEEeCCCCeEEEECCHHHHHHHHHHHHHh
Confidence 43321 12346777775 6688999999999999888765
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=60.60 E-value=8.1 Score=29.62 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHhhhccEEEEEcC---CCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLV---EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~---egsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|.++-+++|+.+.++.. +|.|+|.. +|..+.+|+++|..+..
T Consensus 39 Ik~I~~etg~~I~i~~~~~~~~~V~I~G-----~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 39 LQDLELKTATKIQIPRPDDPSNQIKITG-----TKEGIEKARHEVLLISA 83 (94)
T ss_dssp HHHHHHHTTCCCBCCCTTSSCCEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCCCCCCCCeEEEEE-----CHHHHHHHHHHHHHHhh
Confidence 56777899999999753 58999975 38999999999998853
No 55
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.49 E-value=23 Score=28.93 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=36.3
Q ss_pred HHHHHhhhccEEEEEc---------------CCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCC
Q 021811 2 VKGALKEYGVSCELNL---------------VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 50 (307)
Q Consensus 2 v~~~le~~~i~i~lDl---------------~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF 50 (307)
|+++.+++|+.|.|.- ..+.|.|.. .|+-.+.+|.++|..|..-+
T Consensus 41 iK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a----~~~e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 41 LQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISH----PKPEGLAAAKKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEE----SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEe----CCHHHHHHHHHHHHHHhhch
Confidence 5677799999999972 347888886 78899999999999886543
No 56
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=55.01 E-value=18 Score=26.04 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=32.4
Q ss_pred HHHHHhhhccEEEEEcC--------CCeEEEEcCCCCCChHHHHhHHHHHHHHH
Q 021811 2 VKGALKEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLS 47 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~--------egsV~V~tt~kT~DP~~ilKArD~IkAIa 47 (307)
|..+-+.+|+.+.++.. ++.|+|.. +|..+.+|.++|.++.
T Consensus 25 Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 25 LVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRV 73 (76)
T ss_dssp HHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE-----SHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 45667889999999864 36788863 4889999999999874
No 57
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=53.94 E-value=72 Score=27.76 Aligned_cols=101 Identities=10% Similarity=0.146 Sum_probs=68.5
Q ss_pred cEEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCccccChhhHhhhhccccCC
Q 021811 11 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 90 (307)
Q Consensus 11 i~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~~~nke~f~RrrgRIIG~ 90 (307)
..+..|..++++.|. ..|..+-+++++|+.|-.- .+...++|.|..- +-+.+...-+.+.|.
T Consensus 136 g~v~~d~~~N~Liv~-----g~~~~i~~i~~li~~lD~~-----------~~~~~~v~~L~~a--~A~dla~~L~~~~~~ 197 (241)
T 3ezj_A 136 GNVVNYDPSNVIMLT-----GRASVVERLTEVIQRVDHA-----------GNRTEEVIPLDNA--SASEIARVLESLTKN 197 (241)
T ss_dssp SCEEEEETTTEEEEE-----EEHHHHHHHHHHHHHHHHH-----------TTCEEEEEECSSS--CHHHHHHHHHTTC--
T ss_pred ceEEEcCCccEEEEE-----CCHHHHHHHHHHHHHhCcC-----------CCCceEEEEEecC--CHHHHHHHHHHHhcc
Confidence 467788888999886 5678899999999988652 1346888988863 456777777777776
Q ss_pred CCchHHHHHHHhCceEEEeC--ceEEEecCCCcHHHHHHHHHHH
Q 021811 91 NSSTLKALEILTGCYILVQG--NTVAAMGSFKGLKQVRRIVEDC 132 (307)
Q Consensus 91 ~GkTkkaIE~LT~~yI~V~G--~TVsIIG~~~~IkiAR~aIedl 132 (307)
.|..- -......|+++. |++-|.|+.+.+..++..|..|
T Consensus 198 ~~~~~---~~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~L 238 (241)
T 3ezj_A 198 SGENQ---PATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRL 238 (241)
T ss_dssp --------------CEEEETTTTEEEEEECHHHHHHHHHHHHHT
T ss_pred cccCC---CCCCceEEEEcCCcCeEEEECCHHHHHHHHHHHHHh
Confidence 54310 012345788886 5588899999999998888764
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.68 E-value=14 Score=28.93 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHHhhhccEEEEEcCC---CeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChH
Q 021811 2 VKGALKEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 53 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~e---gsV~V~tt~kT~DP~~ilKArD~IkAIaRGF~~E 53 (307)
|+++.+++|+.|.++-.. +.|+|..+ +..+.+|+++|..+...+.-+
T Consensus 39 Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-----~e~v~~A~~~I~~i~~e~e~~ 88 (104)
T 2ctk_A 39 IRKMMDEFEVNIHVPAPELQSDIIAITGL-----AANLDRAKAGLLERVKELQAE 88 (104)
T ss_dssp HHHHHHHTCCEEECCCTTTTCCEEEEEEC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEecCCCCCcceEEEEcC-----HHHHHHHHHHHHHHHhhHHHh
Confidence 677889999999887542 38999852 478999999999987654433
No 59
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=52.16 E-value=25 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHHhhhccEEEEEc-----CCCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNL-----VEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl-----~egsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|..+-+.+|+.+.++. .++.|+|.. +|..+.+|.++|..+..
T Consensus 27 Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 27 INEIRQMSGAQIKIANPVEGSTDRQVTITG-----SAASISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 4566688899999886 368888874 48999999999998754
No 60
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=50.95 E-value=40 Score=22.14 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=27.8
Q ss_pred HHHHHhhhcc-EEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHc-CCCh
Q 021811 2 VKGALKEYGV-SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR-SVPA 52 (307)
Q Consensus 2 v~~~le~~~i-~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaR-GF~~ 52 (307)
|+++|...|+ .+.+|+..+.++|.. ||. .+++.+|.. ||.+
T Consensus 19 i~~~l~~~gv~~~~v~~~~~~~~v~~-----~~~-----~~i~~~i~~~Gy~~ 61 (67)
T 2kyz_A 19 ISKALEELGVKNYEVSVEEKKVVVET-----ENL-----DSVLKKLEEIDYPV 61 (67)
T ss_dssp HHHHHHHHTCSEEEEETTTTEEEEEC-----SCH-----HHHHHHHHTTTCCC
T ss_pred HHHHHHHcCCeEEEEECCCCEEEEEE-----CCH-----HHHHHHHHHcCCce
Confidence 5677766676 689999999999964 332 456666543 6653
No 61
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=49.41 E-value=25 Score=25.92 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=33.0
Q ss_pred HHHHHhhhccEEEEEcC-----CCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~-----egsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|..+-+.+|+.+.++.. ++.|+|. .+|..+.+|.++|..+..
T Consensus 28 Ik~I~~~sga~I~i~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 28 INEIRQMSGAQIKIANPVEGSSGRQVTIT-----GSAASISLAQYLINARLS 74 (82)
T ss_dssp HHHHHHHHCCEEEECCCCTTCSEEEEEEE-----ECHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCEEEEecCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHH
Confidence 45667889999999763 5678886 457899999999998854
No 62
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=49.18 E-value=19 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHhhhccEEEEEc-------CCCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 021811 2 VKGALKEYGVSCELNL-------VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 49 (307)
Q Consensus 2 v~~~le~~~i~i~lDl-------~egsV~V~tt~kT~DP~~ilKArD~IkAIaRG 49 (307)
|..+-+++|+.|.++- .++.|+|..+ +-.+.+|.++|..+...
T Consensus 37 Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-----~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 37 IRSICKASGAKITCDKESEGTLLLSRLIKISGT-----QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp HHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-----HHHHHHHHHHHHHHHhh
Confidence 5677789999999986 3688999753 34789999999988653
No 63
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.85 E-value=27 Score=31.02 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=45.8
Q ss_pred ccccCCCCchHHHHHHHhCceEEEeCce-EEEecCCCcHHHHHHHHHHHhcCCCch--hHHHHHHHHHHhhh
Q 021811 85 QHLVGPNSSTLKALEILTGCYILVQGNT-VAAMGSFKGLKQVRRIVEDCMQNKMHP--VYHIKILMVKKELE 153 (307)
Q Consensus 85 gRIIG~~GkTkkaIE~LT~~yI~V~G~T-VsIIG~~~~IkiAR~aIedlI~g~iHp--VY~ikelmiKReL~ 153 (307)
.|++|++|..+..|...++|.|.|.=|- |.|=++......+-+||.++=.- -|. .=.....|++.++.
T Consensus 148 ~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~~~ai~~~e~~-~~~~~l~~~v~~~l~~~~~ 218 (229)
T 2ba0_A 148 PRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDRRKVSIAEEAIYLIEQE-AHTEGLTDRVAEFIKRRKA 218 (229)
T ss_dssp HHHHCGGGHHHHHHHHHHTCEEEECTTSEEEEESCHHHHHHHHHHHHHHHHC-SCCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHhcccCCeEEEEECCcEEEEeCCchhHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhcc
Confidence 4799999999999998999999997655 66655555567777777776533 342 33333444444433
No 64
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=47.64 E-value=34 Score=23.11 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=26.8
Q ss_pred HHHHHhhh-cc-EEEEEcCCCeEEEEcCCCCCChHHHHhH
Q 021811 2 VKGALKEY-GV-SCELNLVEGSMTVSTTRKTRDPYIIVKA 39 (307)
Q Consensus 2 v~~~le~~-~i-~i~lDl~egsV~V~tt~kT~DP~~ilKA 39 (307)
|+++|... |+ .+.+|+.++.++|.......++..|..+
T Consensus 20 ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~ 59 (74)
T 3dxs_X 20 VEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEE 59 (74)
T ss_dssp HHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHH
Confidence 67777764 66 5899999999999864444555555444
No 65
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=47.05 E-value=36 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=24.1
Q ss_pred HHHHHhhh-ccEEEEEcCCCeEEEEcCCCCCChHHHH
Q 021811 2 VKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIV 37 (307)
Q Consensus 2 v~~~le~~-~i~i~lDl~egsV~V~tt~kT~DP~~il 37 (307)
|+++|... |+.+.+|+.++.++|.. ..+|..|.
T Consensus 19 i~~~l~~~~gV~v~v~~~~~~~~v~~---~~~~~~i~ 52 (68)
T 3iwl_A 19 VSRVLNKLGGVKYDIDLPNKKVCIES---EHSMDTLL 52 (68)
T ss_dssp HHHHHHHHCSEEEEEETTTTEEEEEE---SSCHHHHH
T ss_pred HHHHHHcCCCeEEEEEcCCCEEEEEe---cCCHHHHH
Confidence 56777664 77899999999999985 34544443
No 66
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=47.00 E-value=27 Score=26.49 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHHhhhccEEEEEcC-----CCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~-----egsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|.++-+++++.|.++-. ++.|+|.. +|..+.+|+++|..+..
T Consensus 37 Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-----~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 37 ISRIQQESGCKIQIAPDSGGLPERSCMLTG-----TPESVQSAKRLLDQIVE 83 (92)
T ss_dssp HHHHHHHSCCEEEECSCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEcCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 56677889999999875 24788874 47899999999998753
No 67
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=46.93 E-value=40 Score=26.54 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHhhhccEEEEEcCCC-----eEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLVEG-----SMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~eg-----sV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|+++-+++++.|.|+...+ .|+|.. +|..+.+|.++|..+..
T Consensus 33 Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-----~~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 33 IKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-----PPDRCEHAARIINDLLQ 79 (106)
T ss_dssp HHHHHHHHTCEEEECSSCSSSSEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcEEEEecCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 5677789999999986543 577764 37899999999998854
No 68
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=46.33 E-value=35 Score=26.61 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHhhhccEEEEEcCC--------CeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 021811 2 VKGALKEYGVSCELNLVE--------GSMTVSTTRKTRDPYIIVKARDLIRLLSRS 49 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~e--------gsV~V~tt~kT~DP~~ilKArD~IkAIaRG 49 (307)
|+.+-+++++.|.++-.. +.|+|. .++..+.+|.++|..+...
T Consensus 29 Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~-----G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 29 VKAINQQTGAFVEISRQLPPNGDPNFKLFIIR-----GSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp HHHHHHHSSSEEEECCCCCTTCCTTEEEEEEE-----SCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhCCEEEEcCccCCCCCCCceEEEEE-----CCHHHHHHHHHHHHHHHhc
Confidence 567778899999998752 677775 4788999999999988554
No 69
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=46.22 E-value=29 Score=25.05 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHHHHhhhccEEEEEcCCC----eEEEEcCCCCCChHHHHhHHHHHHHH
Q 021811 2 VKGALKEYGVSCELNLVEG----SMTVSTTRKTRDPYIIVKARDLIRLL 46 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~eg----sV~V~tt~kT~DP~~ilKArD~IkAI 46 (307)
|.++.+++|+.+.++. .| .|+|..+ +..+.+|+++|..|
T Consensus 27 I~~I~e~tg~~I~i~~-~g~~~~~V~I~G~-----~~~v~~A~~~I~~i 69 (71)
T 1vig_A 27 INRIKDQYKVSVRIPP-DSEKSNLIRIEGD-----PQGVQQAKRELLEL 69 (71)
T ss_dssp HHHHHHHTCCEEECCC-CCSSSEEEEEEES-----SHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCEEEECC-CCCcccEEEEEcC-----HHHHHHHHHHHHHH
Confidence 5778899999999976 45 8999863 46799999999876
No 70
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=45.96 E-value=24 Score=26.53 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.4
Q ss_pred HHHHHhhhccEEEEEcC-----CCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~-----egsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|.++-+++++.|.++.. ++.|+|.. +|-.+.+|+++|..+..
T Consensus 36 Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G-----~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 36 IKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHHTCCEEEECSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEecCCCCCCCccEEEEEc-----CHHHHHHHHHHHHHHHH
Confidence 56677889999999863 57888874 37899999999998753
No 71
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=44.11 E-value=40 Score=29.89 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=46.4
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeCce-EEEec-CCCcHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhh
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQGNT-VAAMG-SFKGLKQVRRIVEDCMQNKMH--PVYHIKILMVKKEL 152 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G~T-VsIIG-~~~~IkiAR~aIedlI~g~iH--pVY~ikelmiKReL 152 (307)
...|++|++|..+..|...++|.|.|.-|- |.|=+ +......+-+||.+|=.- .| .+=.....+++.+|
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG~IWi~~~~~~~~~~~~~ai~~~e~~-~~~~~l~~~v~~~l~~~~ 230 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEE-AYTSGLTKRIIKFIEEER 230 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEEETTTEEEEECSCHHHHHHHHHHHHHHHHC-SCCTTCHHHHHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEEeCCCEEEEecCCHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhh
Confidence 456899999998888887889999998766 55543 334577888888888544 34 13333334444444
No 72
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=43.94 E-value=46 Score=22.01 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=25.3
Q ss_pred HHHHHhhh-cc-EEEEEcCCCeEEEEcCCCCCChHHHHh
Q 021811 2 VKGALKEY-GV-SCELNLVEGSMTVSTTRKTRDPYIIVK 38 (307)
Q Consensus 2 v~~~le~~-~i-~i~lDl~egsV~V~tt~kT~DP~~ilK 38 (307)
|+++|... |+ .+.+|+.++.++|.. ....++..|..
T Consensus 20 i~~~l~~~~gv~~~~v~~~~~~~~v~~-~~~~~~~~i~~ 57 (69)
T 4a4j_A 20 IERAIAKVPGVQSCQVNFALEQAVVSY-HGETTPQILTD 57 (69)
T ss_dssp HHHHHHTSTTEEEEEEETTTTEEEEEE-CTTCCHHHHHH
T ss_pred HHHHHhcCCCeEEEEEEecCCEEEEEE-CCCCCHHHHHH
Confidence 56777764 55 489999999999986 34456554444
No 73
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=42.25 E-value=43 Score=24.85 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHhhhccEEEEEcC--------CCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~--------egsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|..+-+.+|+.+.++.. ++.|+|.. +|..+.+|.++|..+..
T Consensus 25 Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 25 LVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRVT 74 (87)
T ss_dssp HHHHHHHHCCEEEECCTTCBSTTSCEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEccCCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHh
Confidence 45667889999999864 25778763 48899999999998854
No 74
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.63 E-value=52 Score=25.31 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=33.1
Q ss_pred HHHHHhhhccEEEEEcCC------CeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEYGVSCELNLVE------GSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~e------gsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|+++.+++|+.|.++-.. ..|+|.. .+..+.+|+++|..|..
T Consensus 39 Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G-----~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 39 ITQIRLEHDVNIQFPDKDDGNQPQDQITITG-----YEKNTEAARDAILRIVG 86 (97)
T ss_dssp HHHHHHHHTCEEECCCTTTCSSCSSEEEEES-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEecCCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 567788999999987643 2788874 26789999999998853
No 75
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.59 E-value=53 Score=25.21 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHHHHhhhccEEEEEcCCC-----eEEEEcCCCCCChHHHHhHHHHHHHHH
Q 021811 2 VKGALKEYGVSCELNLVEG-----SMTVSTTRKTRDPYIIVKARDLIRLLS 47 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~eg-----sV~V~tt~kT~DP~~ilKArD~IkAIa 47 (307)
|+++.+++++.+.++-. | .|+|.. .|-.+.+|+++|..|.
T Consensus 39 Ir~I~e~tg~~I~i~~~-g~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 39 IRKIMDEFKVDIRFPQS-GAPDPNCVTVTG-----LPENVEEAIDHILNLE 83 (95)
T ss_dssp HHHHHHHHTCEEECCCT-TCSCTTEEEEES-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEecCC-CCCCCcEEEEEc-----CHHHHHHHHHHHHHHH
Confidence 56788999999999754 4 799874 3678999999999885
No 76
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=37.47 E-value=48 Score=25.10 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=33.2
Q ss_pred HHHHHhhhccEEEEEcC-------CCeEEEEcCCCCCChHHHHhHHHHHHHHHcCC
Q 021811 2 VKGALKEYGVSCELNLV-------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 50 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~-------egsV~V~tt~kT~DP~~ilKArD~IkAIaRGF 50 (307)
|..+-+++++.+.++-. ++.|+|.. +|..+.+|+++|..+.+..
T Consensus 37 Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 37 IKQLQERAGVKMVMIQDGPQNTGADKPLRITG-----DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp HHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-----CTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHhcc
Confidence 56677889999998753 23477763 6678999999999987643
No 77
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=37.41 E-value=54 Score=28.61 Aligned_cols=113 Identities=11% Similarity=0.203 Sum_probs=60.3
Q ss_pred HHhhhccEEEEEcC-CCeEEEEcCCCCCChHHHHhHHHHHHH--HHcCCCh-H---HHHhhh------------------
Q 021811 5 ALKEYGVSCELNLV-EGSMTVSTTRKTRDPYIIVKARDLIRL--LSRSVPA-P---QAIKIL------------------ 59 (307)
Q Consensus 5 ~le~~~i~i~lDl~-egsV~V~tt~kT~DP~~ilKArD~IkA--IaRGF~~-E---~AlkLL------------------ 59 (307)
+-+.+|+.+-+|.. .|.|++... +|...-.+.+++.. -..||.. + ..+.+.
T Consensus 25 la~~~g~n~vvd~~V~G~vtl~~~----~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~~~~~~~~~~~~~~~ 100 (241)
T 3ezj_A 25 VGANLNKTIIMGPGVQGAVSIRTM----TPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSD 100 (241)
T ss_dssp HHHHHTCEEEC---CCCEEEEEES----SCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC----------------
T ss_pred HHHHhCCeEEECCCCcceEEEEeC----CCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHHhhhcCCccccCCCC
Confidence 44678899999985 999999963 22222222233222 2334322 0 001110
Q ss_pred ---ccCceeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCceEEEe--CceEEEecCCCcHHHHHHHHHHHh
Q 021811 60 ---DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--GNTVAAMGSFKGLKQVRRIVEDCM 133 (307)
Q Consensus 60 ---eDd~~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~V~--G~TVsIIG~~~~IkiAR~aIedlI 133 (307)
.+++...+|.|.... -+.+...-..+.++.| ++.|.++ .|++.+-|+...+..+++.|..|=
T Consensus 101 ~~~~~~~~t~vi~L~~~~--a~~l~~~L~~l~~~~~----------~g~v~~d~~~N~Liv~g~~~~i~~i~~li~~lD 167 (241)
T 3ezj_A 101 NYAGDEMVTKVVPVRNVS--VRELAPILRQMIDSAG----------SGNVVNYDPSNVIMLTGRASVVERLTEVIQRVD 167 (241)
T ss_dssp ---CCCEEEEEEECCSSC--GGGTHHHHHHHHHHHC----------SSCEEEEETTTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEEecccC--HHHHHHHHHHHhCcCC----------cceEEEcCCccEEEEECCHHHHHHHHHHHHHhC
Confidence 133445566665432 2334443333332221 2567777 477999999999999999998663
No 78
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=36.75 E-value=46 Score=25.72 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=31.9
Q ss_pred HHHHHhhh-ccEEEEEcCCC----eEEEEcCCCCCChHHHHhHHHHHHHHH
Q 021811 2 VKGALKEY-GVSCELNLVEG----SMTVSTTRKTRDPYIIVKARDLIRLLS 47 (307)
Q Consensus 2 v~~~le~~-~i~i~lDl~eg----sV~V~tt~kT~DP~~ilKArD~IkAIa 47 (307)
|+++.+++ |+.+.++- .| .|+|.. .+. .+.+|+++|..|.
T Consensus 39 Ir~I~eetggv~I~i~~-~g~~~~~V~I~G----~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 39 IRSIMEECGGVHIHFPV-EGSGSDTVVIRG----PSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp HHHHHHHHTSCEEECCC-TTTTCCEEEEES----CHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCC-CCCCcceEEEEc----CHH-HHHHHHHHHHHHH
Confidence 56777899 89888865 56 899986 333 8999999999885
No 79
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=36.27 E-value=52 Score=24.16 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=31.9
Q ss_pred HHHHHhhhccEEEEEcC-----CCeEEEEcCCCCCChHHHHhHHHHHHHHH
Q 021811 2 VKGALKEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLS 47 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~-----egsV~V~tt~kT~DP~~ilKArD~IkAIa 47 (307)
|.++-+++|+.+.++.. ++.|+|.. +|..+.+|+++|..+.
T Consensus 29 Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 29 IKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSV 74 (82)
T ss_dssp HHHHHHHHCCEEEECCTTSCSSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEcCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 56677889999998763 35777764 4789999999998874
No 80
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=34.28 E-value=36 Score=29.21 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=24.0
Q ss_pred ceEEEeC--ceEEEecCCCcHHHHHHHHHHH
Q 021811 104 CYILVQG--NTVAAMGSFKGLKQVRRIVEDC 132 (307)
Q Consensus 104 ~yI~V~G--~TVsIIG~~~~IkiAR~aIedl 132 (307)
-.|.++. |++-|-|+.++|..+++.|..+
T Consensus 148 g~v~~d~~tN~Liv~d~~~~i~~i~~lI~~l 178 (181)
T 3oss_D 148 GNVVNYDPSNVIMLTGRASVVERLTEVIQRV 178 (181)
T ss_dssp TCEEEEETTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 3677775 7799999999999999988754
No 81
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=30.89 E-value=2.1e+02 Score=22.95 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCCCChHHHHhHHHHHHHHH-------cCC-ChHHHHhhhccCceeEEEEcCccccChhhHhhhhccccCC
Q 021811 19 EGSMTVSTTRKTRDPYIIVKARDLIRLLS-------RSV-PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 90 (307)
Q Consensus 19 egsV~V~tt~kT~DP~~ilKArD~IkAIa-------RGF-~~E~AlkLLeDd~~~dIIdI~~~~~nke~f~RrrgRIIG~ 90 (307)
.|.|++.....+-.|..+...-+.++..+ -|+ +.+.+-.|++. +..-.|+|..+ +.+...+.|| ++
T Consensus 4 ~~~v~~tGGEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~--~~~~~~~~~g---~~ 77 (182)
T 3can_A 4 GGGVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN-CELLLIDLKSM--DSTVHQTFCD---VP 77 (182)
T ss_dssp CCCEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHT-CSEEEEECCCS--CHHHHHHHHS---SC
T ss_pred CCEEEEEcccccCCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhh-CCEEEEECCCC--CHHHHHHHhC---CC
Confidence 46677765443434332223333333221 222 33444455542 33334566543 4556666665 24
Q ss_pred CCchHHHHHHHhCceEEEeCceEEEecCCCcHHHHHHHHHHHh
Q 021811 91 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 133 (307)
Q Consensus 91 ~GkTkkaIE~LT~~yI~V~G~TVsIIG~~~~IkiAR~aIedlI 133 (307)
..+++++|+.+....+-|.=.+|.+=|-.++...+...+..+-
T Consensus 78 ~~~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~ 120 (182)
T 3can_A 78 NELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLA 120 (182)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5778888888854322222233333333356666666555544
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=27.91 E-value=5.4 Score=41.81 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=14.8
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEeC-ceEEEecCC-CcHHHHHHHHHHHh
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQG-NTVAAMGSF-KGLKQVRRIVEDCM 133 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~G-~TVsIIG~~-~~IkiAR~aIedlI 133 (307)
.++.+||++|++.+.|..-||+.|.|.+ .+|+|-+.- ..++.|++.|..+.
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -------------CTTCCCCCSCC--------CCCBSSHHHHCC---------
T ss_pred HeehcccccceeeehhhHhhCCEEEecCCceEEEecCCHHHHHHHHHHHHHhc
Confidence 5789999999999999888999999997 446664432 22344554554443
No 83
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.49 E-value=1e+02 Score=25.15 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=34.4
Q ss_pred HHHHHhhhccEEEEEcC---------------------CCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 021811 2 VKGALKEYGVSCELNLV---------------------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 49 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~---------------------egsV~V~tt~kT~DP~~ilKArD~IkAIaRG 49 (307)
|+.+-+++|+.|.|.-. .+.|.|.. .|+-.+.+|.++|..|..-
T Consensus 35 iK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a----~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 35 LKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTA----NTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEE----SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEE----CCHHHHHHHHHHHHHHHhc
Confidence 45667889999988652 56777775 6788999999999998754
No 84
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.65 E-value=75 Score=23.90 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=29.8
Q ss_pred HHHHHhhhccEEEEEc--CCCeEEEEcCCCCCChHHHHhHHHHHHHH
Q 021811 2 VKGALKEYGVSCELNL--VEGSMTVSTTRKTRDPYIIVKARDLIRLL 46 (307)
Q Consensus 2 v~~~le~~~i~i~lDl--~egsV~V~tt~kT~DP~~ilKArD~IkAI 46 (307)
|+.+-+++++.+.+.. .+..++|. .+|..+.+|+++|..+
T Consensus 32 Ik~Iqe~Tga~I~I~~~~~~~~v~It-----G~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 32 IKRIQQRTHTYIVTPGRDKEPVFAVT-----GMPENVDRAREEIEAH 73 (83)
T ss_dssp HHHHHHHTTCEEECCCSSSCCEEEEE-----ECTTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEecCCCCCCeEEEE-----cCHHHHHHHHHHHHHH
Confidence 5667788999999884 24444443 5667899999999886
No 85
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=25.75 E-value=67 Score=25.00 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHcCCChHHHHhhhccCceeEEEEcCccccChhhHhhhhccccCCCCchHHHHHHHhCc---------eE
Q 021811 36 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC---------YI 106 (307)
Q Consensus 36 ilKArD~IkAIaRGF~~E~AlkLLeDd~~~dIIdI~~~~~nke~f~RrrgRIIG~~GkTkkaIE~LT~~---------yI 106 (307)
.-=++++..|+++| .++..+.++.||+.++.- +.- ..| -.-|++.|+++ .+..++.+..+ .+
T Consensus 7 ~~~v~~~~~a~~~g-D~~~l~~l~a~Dv~~~~~--g~~----~~~-p~~g~~~G~~a-v~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T 3dm8_A 7 WRFSRALHRALNDR-QTEELATIIDDNIDWAIY--GPI----DMF-PFFGARQGKAA-VLEVCRQIADSVRIYRYHRESV 77 (143)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHEEEEEEEEEE--SCT----TTC-TTCEEEESHHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CHHHHHHhcCCCeEEEec--CCC----CcC-CCCccccCHHH-HHHHHHHHHHhcCcceEEEEEE
Confidence 33456788899987 678899999999765442 210 000 01134455543 23344443332 36
Q ss_pred EEeCceEEEecCCC
Q 021811 107 LVQGNTVAAMGSFK 120 (307)
Q Consensus 107 ~V~G~TVsIIG~~~ 120 (307)
++.|++|+++|.+.
T Consensus 78 ~~~gd~v~v~~~~~ 91 (143)
T 3dm8_A 78 MLGIDSAASMVRYS 91 (143)
T ss_dssp EECSSEEEEEEEEE
T ss_pred EEcCCeEEEEEEEE
Confidence 67899998877665
No 86
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.47 E-value=72 Score=21.72 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=20.2
Q ss_pred HHHHHhhhccE-EEEEcCCCeEEEEc
Q 021811 2 VKGALKEYGVS-CELNLVEGSMTVST 26 (307)
Q Consensus 2 v~~~le~~~i~-i~lDl~egsV~V~t 26 (307)
|+++|..-|+. +.+|+.++.++|..
T Consensus 23 ie~~l~~~gv~~~~v~~~~~~~~v~~ 48 (73)
T 3fry_A 23 VKKALEEAGAKVEKVDLNEAVVAGNK 48 (73)
T ss_dssp HHHHHHHTTCEEEEECSSEEEEEEEG
T ss_pred HHHHhccCCcEEEEEEccCCEEEEEE
Confidence 56777766665 89999999999985
No 87
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=25.16 E-value=11 Score=31.91 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=23.9
Q ss_pred hhccccCCCCchHHHHHHHhCceEEEe
Q 021811 83 RRQHLVGPNSSTLKALEILTGCYILVQ 109 (307)
Q Consensus 83 rrgRIIG~~GkTkkaIE~LT~~yI~V~ 109 (307)
-+++.||++|++.+..-.|||++|-|.
T Consensus 113 q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 113 DKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp THHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred HhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 367899999999999999999988664
No 88
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=25.05 E-value=1.5e+02 Score=21.19 Aligned_cols=41 Identities=22% Similarity=0.115 Sum_probs=31.3
Q ss_pred HHHHHhhhccEEEEEcCC---CeEEEEcCCCCCChHHHHhHHHHHHHHH
Q 021811 2 VKGALKEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLS 47 (307)
Q Consensus 2 v~~~le~~~i~i~lDl~e---gsV~V~tt~kT~DP~~ilKArD~IkAIa 47 (307)
|.++-+++|+.+.++... +.|+|.. +|..+.+|.++|..+.
T Consensus 27 Ik~I~~~tga~I~i~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~l 70 (73)
T 2axy_A 27 VKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKL 70 (73)
T ss_dssp HHHHHHHHCCEEEECSSCCSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEecCCCCcEEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 566778899999998752 2577764 4889999999998654
No 89
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=24.90 E-value=1.5e+02 Score=19.77 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.4
Q ss_pred HHHHHhhh--cc-EEEEEcCCCeEEEEc
Q 021811 2 VKGALKEY--GV-SCELNLVEGSMTVST 26 (307)
Q Consensus 2 v~~~le~~--~i-~i~lDl~egsV~V~t 26 (307)
|+++|... |+ .+.+|+.++.++|..
T Consensus 22 ie~~l~~~~~GV~~~~v~~~~~~~~v~~ 49 (73)
T 1cc8_A 22 VNKVLTKLEPDVSKIDISLEKQLVDVYT 49 (73)
T ss_dssp HHHHHHTTTTSEEEEEEETTTTEEEEEE
T ss_pred HHHHHHhCCCCceEEEEECCCCEEEEEE
Confidence 67778776 55 789999999999985
No 90
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=29.51 E-value=17 Score=29.11 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.6
Q ss_pred EeCce--EEEecCCCcHHHHHHHHHHHhc
Q 021811 108 VQGNT--VAAMGSFKGLKQVRRIVEDCMQ 134 (307)
Q Consensus 108 V~G~T--VsIIG~~~~IkiAR~aIedlI~ 134 (307)
++|++ |.+.|+|.....|+.|+..|-.
T Consensus 58 rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 58 RNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 46766 8899999999999999999874
No 91
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=22.99 E-value=1.5e+02 Score=18.65 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=19.6
Q ss_pred HHHHHhhh-cc-EEEEEcCCCeEEEEcC
Q 021811 2 VKGALKEY-GV-SCELNLVEGSMTVSTT 27 (307)
Q Consensus 2 v~~~le~~-~i-~i~lDl~egsV~V~tt 27 (307)
|+++|... |+ .+.+|+..+.++|...
T Consensus 18 i~~~l~~~~gv~~~~v~~~~~~~~v~~~ 45 (68)
T 1cpz_A 18 IEEAVGRISGVKKVKVQLKKEKAVVKFD 45 (68)
T ss_dssp HHHHHHTSTTEEEEEEETTTTEEEEEEC
T ss_pred HHHHHHcCCCeEEEEEEecCCEEEEEEC
Confidence 56667665 54 5899999999999754
No 92
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=22.88 E-value=1.6e+02 Score=18.87 Aligned_cols=26 Identities=31% Similarity=0.640 Sum_probs=19.3
Q ss_pred HHHHHhhh-cc-EEEEEcCCCeEEEEcC
Q 021811 2 VKGALKEY-GV-SCELNLVEGSMTVSTT 27 (307)
Q Consensus 2 v~~~le~~-~i-~i~lDl~egsV~V~tt 27 (307)
|+++|... |+ .+.+|+..+.++|...
T Consensus 23 i~~~l~~~~gv~~~~v~~~~~~~~v~~~ 50 (71)
T 2l3m_A 23 IESSVKELNGVEQVKVQLAEGTVEVTID 50 (71)
T ss_dssp HHHHHHTSTTEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHcCCCeEEEEEEecCCEEEEEEC
Confidence 55666655 54 6899999999999753
No 93
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=22.53 E-value=1.5e+02 Score=24.21 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=34.2
Q ss_pred CCCCchHHHHHHHhCceEEEeCc------------eEEEe-c-CCCcHHHHHHHHHHHhcCCCch
Q 021811 89 GPNSSTLKALEILTGCYILVQGN------------TVAAM-G-SFKGLKQVRRIVEDCMQNKMHP 139 (307)
Q Consensus 89 G~~GkTkkaIE~LT~~yI~V~G~------------TVsII-G-~~~~IkiAR~aIedlI~g~iHp 139 (307)
|..+.....++.+.||.++|-|. -|.++ | ....|..|-..+...+.|.+.|
T Consensus 53 g~~~~~~~~~~~l~g~~vvi~~~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~~~p~ 117 (145)
T 1p90_A 53 LAEDKNAWRVEQIQDCQVLYVVSIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSPPP 117 (145)
T ss_dssp GCSSHHHHHHHHTTTCSEEEESBCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHSCCCH
T ss_pred CccchHHHHHHHHCCCCEEEECCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcCCChH
Confidence 34455566788889999999865 13333 3 2456777777777788885555
No 94
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=21.67 E-value=13 Score=33.72 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=32.1
Q ss_pred hccccCCCCchHHHHHHHhCceEEEeCceEEEec--CCCcHHHHHHHHHHH
Q 021811 84 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG--SFKGLKQVRRIVEDC 132 (307)
Q Consensus 84 rgRIIG~~GkTkkaIE~LT~~yI~V~G~TVsIIG--~~~~IkiAR~aIedl 132 (307)
..|++|++|..+..|...++|.|.|.=|---.|. +......+-+||.++
T Consensus 166 v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~~~~aI~~~ 216 (251)
T 2je6_I 166 VPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKI 216 (251)
T ss_dssp HHHHHCGGGHHHHHHHTTC---CEECTTSEEEC-----CTTCCTHHHHTTT
T ss_pred hHHHhcCcchHHHHhcccCCeEEEEECCcEEEEeCCCHHHHHHHHHHHHHH
Confidence 4688999999999998889999999876633344 444566666677665
No 95
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=21.56 E-value=1.6e+02 Score=18.40 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHhhh-cc-EEEEEcCCCeEEEEcC
Q 021811 2 VKGALKEY-GV-SCELNLVEGSMTVSTT 27 (307)
Q Consensus 2 v~~~le~~-~i-~i~lDl~egsV~V~tt 27 (307)
|+++|... |+ .+.+|+..+.++|...
T Consensus 19 i~~~l~~~~gv~~~~v~~~~~~~~v~~~ 46 (66)
T 1yg0_A 19 IEKFVGEIEGVSFIDVSVEKKSVVVEFD 46 (66)
T ss_dssp HHHHHTTSSSEEEEEEETTTTEEEEEEC
T ss_pred HHHHHhcCCCceEEEEEcCCCEEEEEEC
Confidence 55666665 55 6889999999999753
No 96
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.50 E-value=1.9e+02 Score=22.45 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHHHhhh-ccEEEEEcCCCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 021811 2 VKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 48 (307)
Q Consensus 2 v~~~le~~-~i~i~lDl~egsV~V~tt~kT~DP~~ilKArD~IkAIaR 48 (307)
|.++.+++ ++.+.+.-.++.|+|+. .|-.+.+|+..|.++..
T Consensus 49 Ik~i~~~~~~v~I~fp~~~~~ItI~G-----~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 49 LAKITQQMPKVHIEFTEGEDKITLEG-----PTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp HHHHHHHCSSSEEEECSSSCEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEeCCCCCEEEEEC-----CHHHHHHHHHHHHHHHH
Confidence 45566655 88888877788899984 47899999998887764
No 97
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=20.27 E-value=3.7e+02 Score=22.20 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=25.6
Q ss_pred CceEEEeC--ceEEEecCCCcHHHHHHHHHHH
Q 021811 103 GCYILVQG--NTVAAMGSFKGLKQVRRIVEDC 132 (307)
Q Consensus 103 ~~yI~V~G--~TVsIIG~~~~IkiAR~aIedl 132 (307)
+|.+.+++ |++-|-|+...|..++.+|..|
T Consensus 118 ~~~v~~d~~tn~l~Vsg~p~~v~~v~~~i~~L 149 (156)
T 3gr5_A 118 SCNVRKITTFNSIEVRGVPECIKYITSLSESL 149 (156)
T ss_dssp TEEEEECSSTTCEEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCEEEEEcCHHHHHHHHHHHHHH
Confidence 47888876 6699999999999999998765
Done!