Query 021813
Match_columns 307
No_of_seqs 206 out of 1693
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 83.5 0.85 2.9E-05 30.2 2.8 30 121-150 16-45 (56)
2 3j21_g 50S ribosomal protein L 75.5 1.7 5.8E-05 28.3 2.3 29 122-150 12-40 (51)
3 1x4u_A Zinc finger, FYVE domai 65.4 3 0.0001 29.9 2.0 24 124-147 14-39 (84)
4 1wfk_A Zinc finger, FYVE domai 65.3 3.1 0.00011 30.1 2.1 26 122-147 7-34 (88)
5 1z2q_A LM5-1; membrane protein 61.0 4 0.00014 29.2 2.0 25 123-147 20-46 (84)
6 1joc_A EEA1, early endosomal a 59.6 3.4 0.00011 32.1 1.4 25 124-148 69-95 (125)
7 2yw8_A RUN and FYVE domain-con 59.4 4.2 0.00014 28.9 1.8 25 124-148 19-45 (82)
8 1vfy_A Phosphatidylinositol-3- 54.7 3.1 0.00011 28.9 0.4 24 125-148 12-37 (73)
9 2dkt_A Ring finger and CHY zin 54.0 3.9 0.00013 32.5 0.9 45 119-163 78-126 (143)
10 1dvp_A HRS, hepatocyte growth 53.9 4.5 0.00015 34.3 1.4 24 125-148 162-187 (220)
11 2cr8_A MDM4 protein; ZF-ranbp 51.3 6.2 0.00021 25.5 1.4 21 125-145 12-32 (53)
12 1y02_A CARP2, FYVE-ring finger 47.3 5 0.00017 30.9 0.6 23 125-147 20-44 (120)
13 2c6a_A Ubiquitin-protein ligas 47.1 8.1 0.00028 24.4 1.4 22 125-146 14-35 (46)
14 3u5e_m 60S ribosomal protein L 42.8 11 0.00038 28.9 2.0 25 123-147 92-118 (128)
15 3t7l_A Zinc finger FYVE domain 40.8 6.8 0.00023 28.4 0.4 25 124-148 20-46 (90)
16 3zyq_A Hepatocyte growth facto 39.7 7.1 0.00024 33.3 0.4 24 125-148 165-190 (226)
17 1wfl_A Zinc finger protein 216 36.4 35 0.0012 23.8 3.4 40 123-163 24-68 (74)
18 3j20_Y 30S ribosomal protein S 31.4 17 0.00058 23.3 1.1 23 123-145 18-44 (50)
19 2apo_B Ribosome biogenesis pro 31.1 26 0.00089 23.4 2.0 22 123-146 5-26 (60)
20 1wil_A KIAA1045 protein; ring 31.1 41 0.0014 24.1 3.1 26 123-148 14-39 (89)
21 2vrw_B P95VAV, VAV1, proto-onc 28.1 20 0.00069 32.9 1.5 27 121-147 354-383 (406)
22 2zjr_Z 50S ribosomal protein L 25.6 38 0.0013 22.5 2.1 23 122-146 28-51 (60)
23 2dkt_A Ring finger and CHY zin 25.6 11 0.00039 29.8 -0.6 34 123-156 97-136 (143)
24 3gj3_B Nuclear pore complex pr 22.4 41 0.0014 19.5 1.5 20 126-145 9-28 (33)
25 2xzm_5 Ribosomal protein S26E 22.0 22 0.00075 27.1 0.3 21 137-157 19-39 (119)
26 3u5c_a 40S ribosomal protein S 21.4 23 0.00078 27.0 0.3 19 138-156 20-38 (119)
27 1twf_L ABC10-alpha, DNA-direct 21.4 50 0.0017 22.7 2.1 27 123-149 27-56 (70)
28 1wff_A Riken cDNA 2810002D23 p 21.0 87 0.003 22.4 3.3 41 122-163 23-69 (85)
29 1wfh_A Zinc finger (AN1-like) 20.5 1.3E+02 0.0043 20.3 3.9 41 123-164 14-59 (64)
30 3mpx_A FYVE, rhogef and PH dom 20.2 22 0.00074 32.9 0.0 24 124-147 375-400 (434)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=83.50 E-value=0.85 Score=30.19 Aligned_cols=30 Identities=33% Similarity=0.670 Sum_probs=25.2
Q ss_pred CCCceeccccCcccCCCCCCCcccCccccc
Q 021813 121 NPRIRYCRKCNQLKPPRCHHCSVCGRCILK 150 (307)
Q Consensus 121 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 150 (307)
......|.+|...-|+||..|+.||.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 456689999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=75.50 E-value=1.7 Score=28.31 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=24.7
Q ss_pred CCceeccccCcccCCCCCCCcccCccccc
Q 021813 122 PRIRYCRKCNQLKPPRCHHCSVCGRCILK 150 (307)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 150 (307)
.....|..|...-|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 35688999999999999999999876544
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.35 E-value=3 Score=29.85 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=17.1
Q ss_pred ceeccccCcc--cCCCCCCCcccCcc
Q 021813 124 IRYCRKCNQL--KPPRCHHCSVCGRC 147 (307)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~~C 147 (307)
...|..|+.. --.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 3567788742 34688999999873
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.28 E-value=3.1 Score=30.14 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.7
Q ss_pred CCceeccccCcc--cCCCCCCCcccCcc
Q 021813 122 PRIRYCRKCNQL--KPPRCHHCSVCGRC 147 (307)
Q Consensus 122 ~~~~~C~~C~~~--kP~Rs~HC~~C~~C 147 (307)
.....|..|+.. --.|-|||+.||+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE
Confidence 344678888752 24688999999873
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=60.97 E-value=4 Score=29.18 Aligned_cols=25 Identities=32% Similarity=0.748 Sum_probs=18.0
Q ss_pred CceeccccCcc--cCCCCCCCcccCcc
Q 021813 123 RIRYCRKCNQL--KPPRCHHCSVCGRC 147 (307)
Q Consensus 123 ~~~~C~~C~~~--kP~Rs~HC~~C~~C 147 (307)
+...|..|+.. --.|-|||+.||+-
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcE
Confidence 34678888742 23588999999874
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.59 E-value=3.4 Score=32.06 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=17.7
Q ss_pred ceeccccCcc--cCCCCCCCcccCccc
Q 021813 124 IRYCRKCNQL--KPPRCHHCSVCGRCI 148 (307)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 148 (307)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3568888752 246889999998743
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.37 E-value=4.2 Score=28.94 Aligned_cols=25 Identities=36% Similarity=0.861 Sum_probs=17.7
Q ss_pred ceeccccCcc--cCCCCCCCcccCccc
Q 021813 124 IRYCRKCNQL--KPPRCHHCSVCGRCI 148 (307)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 148 (307)
...|..|+.. --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 3568888742 235889999998743
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=54.69 E-value=3.1 Score=28.95 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=17.1
Q ss_pred eeccccCcc--cCCCCCCCcccCccc
Q 021813 125 RYCRKCNQL--KPPRCHHCSVCGRCI 148 (307)
Q Consensus 125 ~~C~~C~~~--kP~Rs~HC~~C~~CV 148 (307)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 368888742 235899999998743
No 9
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=54.01 E-value=3.9 Score=32.55 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=30.0
Q ss_pred CCCCCceeccccCcccCCC-CCCCcccCccccc---ccccCcccccccc
Q 021813 119 PLNPRIRYCRKCNQLKPPR-CHHCSVCGRCILK---MDHHCVWVVNCVG 163 (307)
Q Consensus 119 ~~~~~~~~C~~C~~~kP~R-s~HC~~C~~CV~~---~DHHCpwi~nCIG 163 (307)
+......||.+|+.+.+++ ..||..||-|... ---||.=-|.|+.
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4455668999999986554 5788888888765 1235665555643
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.85 E-value=4.5 Score=34.33 Aligned_cols=24 Identities=38% Similarity=0.908 Sum_probs=18.0
Q ss_pred eeccccCcc--cCCCCCCCcccCccc
Q 021813 125 RYCRKCNQL--KPPRCHHCSVCGRCI 148 (307)
Q Consensus 125 ~~C~~C~~~--kP~Rs~HC~~C~~CV 148 (307)
..|..|+.. ---|-|||+.||+-+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 689999742 235899999998743
No 11
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=51.28 E-value=6.2 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=14.9
Q ss_pred eeccccCcccCCCCCCCcccC
Q 021813 125 RYCRKCNQLKPPRCHHCSVCG 145 (307)
Q Consensus 125 ~~C~~C~~~kP~Rs~HC~~C~ 145 (307)
=.|.+|+..-||-..||..|-
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTC
T ss_pred eecccccccCCCccchhHHHH
Confidence 347777777777777777664
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.31 E-value=5 Score=30.93 Aligned_cols=23 Identities=22% Similarity=0.625 Sum_probs=16.8
Q ss_pred eeccccCcc--cCCCCCCCcccCcc
Q 021813 125 RYCRKCNQL--KPPRCHHCSVCGRC 147 (307)
Q Consensus 125 ~~C~~C~~~--kP~Rs~HC~~C~~C 147 (307)
..|..|... -..|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 468888742 24589999999984
No 13
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=47.10 E-value=8.1 Score=24.37 Aligned_cols=22 Identities=36% Similarity=0.928 Sum_probs=17.1
Q ss_pred eeccccCcccCCCCCCCcccCc
Q 021813 125 RYCRKCNQLKPPRCHHCSVCGR 146 (307)
Q Consensus 125 ~~C~~C~~~kP~Rs~HC~~C~~ 146 (307)
=.|.+|+..-||-..||..|-.
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 4588899888888888877743
No 14
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=42.78 E-value=11 Score=28.87 Aligned_cols=25 Identities=40% Similarity=0.938 Sum_probs=21.8
Q ss_pred CceeccccCcccCCCCCCCc--ccCcc
Q 021813 123 RIRYCRKCNQLKPPRCHHCS--VCGRC 147 (307)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~--~C~~C 147 (307)
....|.+|...-|+|+..|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 45899999999999999999 48764
No 15
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.85 E-value=6.8 Score=28.37 Aligned_cols=25 Identities=32% Similarity=0.800 Sum_probs=17.5
Q ss_pred ceeccccCcc--cCCCCCCCcccCccc
Q 021813 124 IRYCRKCNQL--KPPRCHHCSVCGRCI 148 (307)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 148 (307)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3568888742 235889999998743
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.69 E-value=7.1 Score=33.33 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=17.5
Q ss_pred eeccccCcc--cCCCCCCCcccCccc
Q 021813 125 RYCRKCNQL--KPPRCHHCSVCGRCI 148 (307)
Q Consensus 125 ~~C~~C~~~--kP~Rs~HC~~C~~CV 148 (307)
..|..|+.. ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 579999742 234789999998843
No 17
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.41 E-value=35 Score=23.81 Aligned_cols=40 Identities=23% Similarity=0.541 Sum_probs=23.7
Q ss_pred CceeccccCcccCCCCCCCcccCc--ccc---cccccCcccccccc
Q 021813 123 RIRYCRKCNQLKPPRCHHCSVCGR--CIL---KMDHHCVWVVNCVG 163 (307)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV~---~~DHHCpwi~nCIG 163 (307)
....|..|+..--.=...|+ |+. |-. -=||.|++--.-.|
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 34679999864222247787 764 322 22898987654443
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.44 E-value=17 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.814 Sum_probs=13.8
Q ss_pred CceeccccCc--c-cC-CCCCCCcccC
Q 021813 123 RIRYCRKCNQ--L-KP-PRCHHCSVCG 145 (307)
Q Consensus 123 ~~~~C~~C~~--~-kP-~Rs~HC~~C~ 145 (307)
..++|+.|.. . .+ ...++|..|+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 4689999975 1 11 1245676665
No 19
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=31.13 E-value=26 Score=23.40 Aligned_cols=22 Identities=32% Similarity=0.815 Sum_probs=17.6
Q ss_pred CceeccccCcccCCCCCCCcccCc
Q 021813 123 RIRYCRKCNQLKPPRCHHCSVCGR 146 (307)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~~ 146 (307)
..+.|..|.++-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 5688999988877 677888875
No 20
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=31.12 E-value=41 Score=24.11 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=21.8
Q ss_pred CceeccccCcccCCCCCCCcccCccc
Q 021813 123 RIRYCRKCNQLKPPRCHHCSVCGRCI 148 (307)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~~CV 148 (307)
....|..|.++-..--.-|++|+|+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 44789999999988888899999963
No 21
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=28.11 E-value=20 Score=32.88 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=19.6
Q ss_pred CCCceeccccCccc---CCCCCCCcccCcc
Q 021813 121 NPRIRYCRKCNQLK---PPRCHHCSVCGRC 147 (307)
Q Consensus 121 ~~~~~~C~~C~~~k---P~Rs~HC~~C~~C 147 (307)
.....+|..|+..- -.|-|||+.|+..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~ 383 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAP 383 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCc
Confidence 34668999998532 4588999988753
No 22
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=25.63 E-value=38 Score=22.53 Aligned_cols=23 Identities=39% Similarity=0.993 Sum_probs=16.4
Q ss_pred CCceeccccCcccCCCCCC-CcccCc
Q 021813 122 PRIRYCRKCNQLKPPRCHH-CSVCGR 146 (307)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~H-C~~C~~ 146 (307)
.....|..|...+ ++|| |..||.
T Consensus 28 p~l~~c~~cG~~~--~pH~vc~~CG~ 51 (60)
T 2zjr_Z 28 PNLTECPQCHGKK--LSHHICPNCGY 51 (60)
T ss_dssp CCCEECTTTCCEE--CTTBCCTTTCB
T ss_pred CCceECCCCCCEe--CCceEcCCCCc
Confidence 4557899999775 6666 777763
No 23
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=25.58 E-value=11 Score=29.81 Aligned_cols=34 Identities=26% Similarity=0.661 Sum_probs=22.9
Q ss_pred CceeccccC---cccCCCCCCCcccCcccc--ccc-ccCc
Q 021813 123 RIRYCRKCN---QLKPPRCHHCSVCGRCIL--KMD-HHCV 156 (307)
Q Consensus 123 ~~~~C~~C~---~~kP~Rs~HC~~C~~CV~--~~D-HHCp 156 (307)
..-.|..|. +=+..--.||..||.|+. ..| |.|.
T Consensus 97 ~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 97 RQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp SEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred ceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 444565554 445577889999999964 344 7774
No 24
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.38 E-value=41 Score=19.53 Aligned_cols=20 Identities=25% Similarity=0.708 Sum_probs=13.8
Q ss_pred eccccCcccCCCCCCCcccC
Q 021813 126 YCRKCNQLKPPRCHHCSVCG 145 (307)
Q Consensus 126 ~C~~C~~~kP~Rs~HC~~C~ 145 (307)
-|..|...-++.+.+|..|+
T Consensus 9 ~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp ECTTTCCEECTTCSBCTTTC
T ss_pred eCCcccCCCccccCEEcccC
Confidence 47777777777777777664
No 25
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=21.96 E-value=22 Score=27.11 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=15.4
Q ss_pred CCCCCcccCcccccccccCcc
Q 021813 137 RCHHCSVCGRCILKMDHHCVW 157 (307)
Q Consensus 137 Rs~HC~~C~~CV~~~DHHCpw 157 (307)
+.-||..|++||.+----+.+
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf 39 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKRY 39 (119)
T ss_dssp CEEECTTTCCEEETTTSEECC
T ss_pred ccEeeCCccccCcccceeEEE
Confidence 345799999999986655543
No 26
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=21.44 E-value=23 Score=27.03 Aligned_cols=19 Identities=21% Similarity=0.231 Sum_probs=14.2
Q ss_pred CCCCcccCcccccccccCc
Q 021813 138 CHHCSVCGRCILKMDHHCV 156 (307)
Q Consensus 138 s~HC~~C~~CV~~~DHHCp 156 (307)
.-||..|++||++----+.
T Consensus 20 ~V~C~nCgr~vPKDKAIKr 38 (119)
T 3u5c_a 20 PVRCVNCSKSIPKDKAIKR 38 (119)
T ss_dssp EEECTTTCCEEEGGGSCEE
T ss_pred cEeeccccccccccceeeE
Confidence 4479999999998655443
No 27
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.40 E-value=50 Score=22.67 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=19.3
Q ss_pred CceeccccCcc---cCCCCCCCcccCcccc
Q 021813 123 RIRYCRKCNQL---KPPRCHHCSVCGRCIL 149 (307)
Q Consensus 123 ~~~~C~~C~~~---kP~Rs~HC~~C~~CV~ 149 (307)
....|..|... ++.-+-||+.||.-|+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 34579999854 4555778999987655
No 28
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.98 E-value=87 Score=22.38 Aligned_cols=41 Identities=22% Similarity=0.587 Sum_probs=25.6
Q ss_pred CCceeccccCcccCC-CCCCCcccCc--cccc---ccccCcccccccc
Q 021813 122 PRIRYCRKCNQLKPP-RCHHCSVCGR--CILK---MDHHCVWVVNCVG 163 (307)
Q Consensus 122 ~~~~~C~~C~~~kP~-Rs~HC~~C~~--CV~~---~DHHCpwi~nCIG 163 (307)
.....|..|+..-.. -..+|+ |+. |-.- -||.|++--.-.|
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred ccCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhhHHH
Confidence 344779999865444 367786 654 4333 4899987544333
No 29
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.47 E-value=1.3e+02 Score=20.30 Aligned_cols=41 Identities=24% Similarity=0.557 Sum_probs=23.7
Q ss_pred CceeccccCcccCCCCCCCcccCc--cc---ccccccCccccccccc
Q 021813 123 RIRYCRKCNQLKPPRCHHCSVCGR--CI---LKMDHHCVWVVNCVGA 164 (307)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV---~~~DHHCpwi~nCIG~ 164 (307)
....|..|+..-..=...|+ |+. |- .-=||.|++--.-.|+
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAGS 59 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCCC
T ss_pred cCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHHH
Confidence 44678888864332256774 654 32 2238888876554443
No 30
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.18 E-value=22 Score=32.90 Aligned_cols=24 Identities=33% Similarity=0.814 Sum_probs=0.0
Q ss_pred ceeccccCcc--cCCCCCCCcccCcc
Q 021813 124 IRYCRKCNQL--KPPRCHHCSVCGRC 147 (307)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~~C 147 (307)
...|..|... --.|-|||+.||+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp --------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCE
Confidence 4568888742 23478999999984
Done!