Query 021816
Match_columns 307
No_of_seqs 233 out of 1331
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.9 5.9E-25 2E-29 178.2 13.2 102 27-186 2-103 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.9 7.6E-25 2.6E-29 176.3 12.0 101 25-183 3-103 (105)
3 3osg_A MYB21; transcription-DN 99.9 2.4E-24 8.1E-29 179.5 13.6 105 24-187 9-113 (126)
4 1h8a_C AMV V-MYB, MYB transfor 99.9 4.1E-24 1.4E-28 178.0 10.9 103 21-181 22-124 (128)
5 3zqc_A MYB3; transcription-DNA 99.9 5.4E-24 1.8E-28 178.3 11.1 102 26-185 2-103 (131)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 3.3E-22 1.1E-26 172.0 10.7 102 22-181 54-155 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.4E-22 4.7E-27 174.4 5.0 100 25-181 5-104 (159)
8 2cjj_A Radialis; plant develop 99.8 1.6E-19 5.5E-24 144.1 8.7 69 25-93 7-75 (93)
9 2cqq_A RSGI RUH-037, DNAJ homo 99.8 1.5E-19 5.2E-24 138.0 7.4 66 24-91 6-71 (72)
10 2cu7_A KIAA1915 protein; nucle 99.7 6.3E-17 2.2E-21 122.6 7.5 64 133-198 8-71 (72)
11 1wgx_A KIAA1903 protein; MYB D 99.6 3E-16 1E-20 120.0 6.1 52 25-76 7-58 (73)
12 2cqr_A RSGI RUH-043, DNAJ homo 99.6 3.4E-16 1.2E-20 119.7 6.3 56 23-78 15-70 (73)
13 1h8a_C AMV V-MYB, MYB transfor 99.6 2.5E-16 8.7E-21 130.9 5.1 73 55-181 1-73 (128)
14 1ofc_X ISWI protein; nuclear p 99.6 1E-15 3.5E-20 144.9 6.9 132 27-183 111-275 (304)
15 4eef_G F-HB80.4, designed hema 99.6 1.7E-16 5.9E-21 121.0 0.7 49 24-72 18-66 (74)
16 2xag_B REST corepressor 1; ami 99.5 5.2E-15 1.8E-19 147.3 4.5 51 133-185 379-429 (482)
17 2elk_A SPCC24B10.08C protein; 99.5 1.3E-14 4.4E-19 105.8 4.8 47 135-182 10-57 (58)
18 1x41_A Transcriptional adaptor 99.5 9.4E-15 3.2E-19 107.0 4.0 49 134-183 8-56 (60)
19 1guu_A C-MYB, MYB proto-oncoge 99.5 2.7E-14 9.3E-19 101.2 6.0 46 135-181 4-49 (52)
20 2yum_A ZZZ3 protein, zinc fing 99.5 2.5E-14 8.5E-19 108.8 4.7 50 135-185 9-63 (75)
21 1gvd_A MYB proto-oncogene prot 99.5 5.6E-14 1.9E-18 99.7 5.0 46 135-181 4-49 (52)
22 2dim_A Cell division cycle 5-l 99.4 7.4E-14 2.5E-18 104.9 5.1 50 24-76 7-56 (70)
23 2yus_A SWI/SNF-related matrix- 99.4 8.3E-14 2.8E-18 107.8 5.1 46 133-180 17-62 (79)
24 1w0t_A Telomeric repeat bindin 99.4 1.3E-13 4.4E-18 98.4 5.6 47 135-182 3-51 (53)
25 1ity_A TRF1; helix-turn-helix, 99.4 2.2E-13 7.6E-18 102.1 6.4 53 131-184 7-61 (69)
26 2d9a_A B-MYB, MYB-related prot 99.4 1.4E-13 4.6E-18 100.4 4.9 49 133-182 7-55 (60)
27 2yum_A ZZZ3 protein, zinc fing 99.4 6.2E-13 2.1E-17 101.0 7.7 65 24-91 6-72 (75)
28 3sjm_A Telomeric repeat-bindin 99.4 4E-13 1.4E-17 100.0 6.1 49 133-182 10-60 (64)
29 1ign_A Protein (RAP1); RAP1,ye 99.3 5E-12 1.7E-16 115.8 11.9 135 25-184 7-200 (246)
30 2dim_A Cell division cycle 5-l 99.3 8.1E-13 2.8E-17 99.2 5.0 48 133-181 8-55 (70)
31 2yus_A SWI/SNF-related matrix- 99.3 6.6E-13 2.3E-17 102.7 4.2 57 24-84 16-73 (79)
32 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.6E-12 5.6E-17 99.2 5.2 48 133-181 17-67 (73)
33 1x41_A Transcriptional adaptor 99.3 4.7E-12 1.6E-16 92.6 6.7 50 24-76 6-55 (60)
34 2eqr_A N-COR1, N-COR, nuclear 99.3 3.7E-12 1.3E-16 93.6 6.1 50 127-178 5-54 (61)
35 1guu_A C-MYB, MYB proto-oncoge 99.3 6.4E-12 2.2E-16 88.9 6.9 49 25-76 2-50 (52)
36 2din_A Cell division cycle 5-l 99.3 5.8E-12 2E-16 93.5 6.8 59 21-84 4-62 (66)
37 2ltp_A Nuclear receptor corepr 98.9 3.5E-13 1.2E-17 106.2 0.0 51 133-185 15-65 (89)
38 2ckx_A NGTRF1, telomere bindin 99.3 7.4E-12 2.5E-16 97.8 6.6 50 136-185 2-54 (83)
39 2din_A Cell division cycle 5-l 99.3 6.3E-12 2.2E-16 93.3 5.9 50 134-186 9-58 (66)
40 1gvd_A MYB proto-oncogene prot 99.3 9.4E-12 3.2E-16 88.1 6.4 49 25-76 2-50 (52)
41 2d9a_A B-MYB, MYB-related prot 99.2 1.4E-11 4.8E-16 89.7 7.1 50 24-76 6-55 (60)
42 2aje_A Telomere repeat-binding 99.2 1.1E-11 3.9E-16 100.8 7.2 55 130-184 9-66 (105)
43 2elk_A SPCC24B10.08C protein; 99.2 1.3E-11 4.3E-16 89.8 6.4 46 26-74 9-55 (58)
44 3sjm_A Telomeric repeat-bindin 99.2 2.7E-11 9.3E-16 90.0 8.0 50 24-76 9-60 (64)
45 2juh_A Telomere binding protei 99.2 3.2E-11 1.1E-15 100.3 7.4 56 130-185 13-71 (121)
46 1w0t_A Telomeric repeat bindin 99.2 4.9E-11 1.7E-15 84.9 7.3 48 26-76 2-51 (53)
47 2roh_A RTBP1, telomere binding 99.2 4.8E-11 1.6E-15 99.4 8.3 56 130-185 27-85 (122)
48 2cu7_A KIAA1915 protein; nucle 99.2 5.5E-11 1.9E-15 89.8 7.1 51 23-77 6-56 (72)
49 2llk_A Cyclin-D-binding MYB-li 99.2 2.3E-11 7.9E-16 92.9 5.0 43 133-178 22-64 (73)
50 2juh_A Telomere binding protei 99.2 7.2E-11 2.5E-15 98.2 8.2 88 21-159 12-103 (121)
51 1gv2_A C-MYB, MYB proto-oncoge 99.1 2.7E-11 9.3E-16 96.9 5.0 46 135-181 5-50 (105)
52 2y9y_A Imitation switch protei 99.1 1E-10 3.5E-15 113.3 8.2 135 27-184 124-292 (374)
53 2eqr_A N-COR1, N-COR, nuclear 99.1 1.3E-10 4.5E-15 85.3 6.7 49 22-74 8-56 (61)
54 2iw5_B Protein corest, REST co 99.1 3.1E-11 1.1E-15 109.7 4.1 51 133-185 132-182 (235)
55 1ity_A TRF1; helix-turn-helix, 99.1 2.1E-10 7.1E-15 85.8 7.7 50 24-76 8-59 (69)
56 2cjj_A Radialis; plant develop 99.1 9.7E-11 3.3E-15 93.3 6.0 49 135-184 9-60 (93)
57 2k9n_A MYB24; R2R3 domain, DNA 99.1 9E-11 3.1E-15 94.6 4.8 46 135-181 2-47 (107)
58 3zqc_A MYB3; transcription-DNA 99.1 1.3E-10 4.6E-15 96.8 5.8 46 135-181 3-48 (131)
59 3osg_A MYB21; transcription-DN 99.0 1.5E-10 5.3E-15 95.9 5.7 47 133-181 10-56 (126)
60 1x58_A Hypothetical protein 49 99.0 1.4E-10 4.8E-15 85.9 4.7 49 133-182 7-57 (62)
61 2roh_A RTBP1, telomere binding 99.0 1.1E-09 3.9E-14 91.2 10.3 83 22-155 27-114 (122)
62 2llk_A Cyclin-D-binding MYB-li 99.0 3E-10 1E-14 86.7 5.2 53 19-76 16-68 (73)
63 2yqk_A Arginine-glutamic acid 98.9 1.3E-09 4.5E-14 80.6 6.1 44 133-177 8-51 (63)
64 1wgx_A KIAA1903 protein; MYB D 98.9 4.9E-10 1.7E-14 85.6 3.6 45 135-180 9-56 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.1E-09 3.9E-14 83.2 4.9 45 134-180 8-55 (72)
66 4b4c_A Chromodomain-helicase-D 98.9 2.7E-08 9.2E-13 88.2 13.9 52 25-77 6-59 (211)
67 2crg_A Metastasis associated p 98.8 7E-09 2.4E-13 78.3 6.7 45 133-178 7-51 (70)
68 2yqk_A Arginine-glutamic acid 98.8 9E-09 3.1E-13 76.1 6.7 47 25-75 8-55 (63)
69 2ltp_A Nuclear receptor corepr 98.3 5.4E-10 1.8E-14 87.9 0.0 51 22-76 12-62 (89)
70 2ckx_A NGTRF1, telomere bindin 98.8 2.5E-08 8.7E-13 77.7 9.5 47 27-76 1-51 (83)
71 1ign_A Protein (RAP1); RAP1,ye 98.7 5.1E-09 1.7E-13 96.0 3.5 50 135-185 9-63 (246)
72 4eef_G F-HB80.4, designed hema 98.7 2.2E-09 7.4E-14 81.9 0.9 44 134-178 20-66 (74)
73 2crg_A Metastasis associated p 98.7 3.3E-08 1.1E-12 74.6 6.6 46 25-74 7-53 (70)
74 1irz_A ARR10-B; helix-turn-hel 98.6 6.7E-08 2.3E-12 72.0 6.5 54 132-186 5-62 (64)
75 2aje_A Telomere repeat-binding 98.6 1.1E-07 3.8E-12 77.2 7.3 52 22-76 9-64 (105)
76 1x58_A Hypothetical protein 49 98.5 2.2E-07 7.4E-12 68.8 6.8 49 24-76 6-57 (62)
77 2iw5_B Protein corest, REST co 98.5 9.5E-08 3.2E-12 86.9 5.6 49 24-76 131-179 (235)
78 4a69_C Nuclear receptor corepr 98.5 2.2E-07 7.4E-12 73.9 6.2 46 26-75 43-88 (94)
79 4a69_C Nuclear receptor corepr 98.4 2.4E-07 8E-12 73.7 5.0 44 132-177 41-84 (94)
80 1fex_A TRF2-interacting telome 97.9 1E-05 3.4E-10 59.1 4.3 47 135-181 3-57 (59)
81 2xag_B REST corepressor 1; ami 97.8 1.6E-05 5.6E-10 79.3 6.3 48 25-76 379-426 (482)
82 2xb0_X Chromo domain-containin 97.8 0.00019 6.5E-09 66.9 12.7 51 25-76 2-54 (270)
83 3hm5_A DNA methyltransferase 1 97.8 4E-05 1.4E-09 60.9 5.9 50 135-186 31-85 (93)
84 3hm5_A DNA methyltransferase 1 97.7 7.5E-05 2.6E-09 59.3 7.3 49 27-79 31-84 (93)
85 1ug2_A 2610100B20RIK gene prod 97.7 8E-05 2.7E-09 58.9 6.2 49 27-76 34-82 (95)
86 1ug2_A 2610100B20RIK gene prod 97.5 0.00015 5.3E-09 57.3 6.2 52 133-185 32-85 (95)
87 1fex_A TRF2-interacting telome 97.5 0.00027 9.4E-09 51.4 6.5 50 26-75 2-57 (59)
88 2lr8_A CAsp8-associated protei 96.5 2.3E-05 8E-10 58.8 0.0 48 27-76 15-62 (70)
89 2lr8_A CAsp8-associated protei 96.2 7.9E-05 2.7E-09 56.0 0.0 50 134-185 14-65 (70)
90 4iej_A DNA methyltransferase 1 96.9 0.0026 8.9E-08 50.4 7.3 50 27-80 31-85 (93)
91 2ebi_A DNA binding protein GT- 96.6 0.0034 1.2E-07 48.1 5.9 56 25-80 3-68 (86)
92 1ofc_X ISWI protein; nuclear p 96.5 0.003 1E-07 59.7 5.9 48 136-184 112-159 (304)
93 4iej_A DNA methyltransferase 1 95.9 0.013 4.3E-07 46.5 5.8 51 135-186 31-85 (93)
94 2ebi_A DNA binding protein GT- 95.8 0.0092 3.2E-07 45.6 4.6 51 134-185 4-67 (86)
95 4b4c_A Chromodomain-helicase-D 95.0 0.021 7.3E-07 50.0 4.7 50 134-183 7-59 (211)
96 1irz_A ARR10-B; helix-turn-hel 94.2 0.2 7E-06 36.9 7.4 53 24-77 5-59 (64)
97 2y9y_A Imitation switch protei 89.3 0.42 1.5E-05 46.3 5.4 47 136-183 125-172 (374)
98 2hzd_A Transcriptional enhance 72.4 13 0.00043 28.6 6.9 50 134-184 6-74 (82)
99 2xb0_X Chromo domain-containin 70.3 3.6 0.00012 38.0 4.1 29 27-58 169-197 (270)
100 2hzd_A Transcriptional enhance 44.2 52 0.0018 25.2 5.8 52 25-76 5-73 (82)
101 2dn0_A Zinc fingers and homeob 38.0 1.1E+02 0.0037 21.9 7.5 54 19-73 5-58 (76)
102 2li6_A SWI/SNF chromatin-remod 34.7 29 0.001 27.5 3.3 27 156-183 72-98 (116)
103 2lc3_A E3 ubiquitin-protein li 31.9 78 0.0027 24.4 5.1 52 128-183 7-79 (88)
104 3i4p_A Transcriptional regulat 28.3 74 0.0025 25.9 4.9 41 32-76 3-43 (162)
105 2ecc_A Homeobox and leucine zi 26.6 1.9E+02 0.0067 21.3 6.7 48 24-72 5-52 (76)
106 2hdd_A Protein (engrailed home 25.8 1.6E+02 0.0054 19.9 5.7 48 24-72 5-52 (61)
107 2gu0_A Nonstructural protein 2 23.9 41 0.0014 31.2 2.6 33 152-192 218-250 (312)
108 2jrz_A Histone demethylase jar 23.9 54 0.0018 26.0 3.1 28 156-184 63-94 (117)
109 3a02_A Homeobox protein arista 23.8 1.7E+02 0.0058 19.7 5.4 47 25-72 2-48 (60)
110 2dms_A Homeobox protein OTX2; 23.6 2E+02 0.007 20.5 6.8 49 24-73 9-57 (80)
111 2dmu_A Homeobox protein goosec 23.5 1.9E+02 0.0065 20.1 6.3 48 24-72 9-56 (70)
112 2cuf_A FLJ21616 protein; homeo 23.4 1.5E+02 0.0052 22.0 5.5 49 24-73 9-72 (95)
113 2e1o_A Homeobox protein PRH; D 22.5 2E+02 0.0069 20.0 6.7 48 24-72 9-56 (70)
114 2dmt_A Homeobox protein BARH-l 22.1 2.2E+02 0.0076 20.4 6.2 49 24-73 19-67 (80)
115 2dmq_A LIM/homeobox protein LH 21.5 2.2E+02 0.0077 20.2 6.9 49 23-72 8-56 (80)
116 2eqy_A RBP2 like, jumonji, at 20.9 80 0.0027 25.2 3.6 28 156-184 65-96 (122)
117 2da1_A Alpha-fetoprotein enhan 20.6 2.2E+02 0.0074 19.7 6.8 48 24-72 9-56 (70)
118 2e1c_A Putative HTH-type trans 20.3 1.6E+02 0.0055 24.2 5.5 41 32-76 27-67 (171)
119 2cra_A Homeobox protein HOX-B1 20.1 2.3E+02 0.0077 19.7 6.8 49 24-73 9-57 (70)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.92 E-value=5.9e-25 Score=178.21 Aligned_cols=102 Identities=16% Similarity=0.392 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhccCC
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHG 106 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~~~ 106 (307)
+.||+|||.+|..+|..|+.. +|..||..|||||..||++||..+++ |.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~i--------------- 51 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYIN------------PAL--------------- 51 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSS------------SCC---------------
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHc------------ccc---------------
Confidence 579999999999999999964 59999999999999999999998765 332
Q ss_pred CCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhc
Q 021816 107 YDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS 186 (307)
Q Consensus 107 ~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s 186 (307)
+.++||+|||.+|+.++.+||. +|..||+ +|++||+.||++||..+.++...
T Consensus 52 --------------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 --------------------------RTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp --------------------------TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred --------------------------cccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHH
Confidence 1248999999999999999998 9999997 99999999999999988877653
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.92 E-value=7.6e-25 Score=176.32 Aligned_cols=101 Identities=23% Similarity=0.478 Sum_probs=88.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhcc
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN 104 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~ 104 (307)
..+.||+|||++|..+|..||.. +|..||+.|||||..||++||..+++ |..
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~------------- 54 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PEV------------- 54 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTC------------CCC-------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccC------------Ccc-------------
Confidence 46789999999999999999964 59999999999999999999988654 322
Q ss_pred CCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816 105 HGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR 183 (307)
Q Consensus 105 ~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r 183 (307)
+.++||+|||++|+.++++||. +|..||+ +||+||+.||++||+.++++
T Consensus 55 ----------------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 ----------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp ----------------------------CCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHTC-
T ss_pred ----------------------------cccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHHhc
Confidence 2248999999999999999998 9999997 99999999999999876544
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.91 E-value=2.4e-24 Score=179.51 Aligned_cols=105 Identities=24% Similarity=0.467 Sum_probs=92.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhc
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVN 103 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~ 103 (307)
...+.||+|||++|..+|+.|+. +|..||..|||||..||++||...++ |..
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~------------ 60 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------PSI------------ 60 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------TTS------------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------ccc------------
Confidence 45788999999999999999986 49999999999999999999998764 322
Q ss_pred cCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816 104 NHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR 183 (307)
Q Consensus 104 ~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r 183 (307)
+.++||+|||++|+.++++||. +|..||. +|++||+.||++||..+.++
T Consensus 61 -----------------------------~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 61 -----------------------------SHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp -----------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHH
T ss_pred -----------------------------ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHh
Confidence 1248999999999999999998 9999997 99999999999999988887
Q ss_pred HhcC
Q 021816 184 QLSG 187 (307)
Q Consensus 184 ~~s~ 187 (307)
+..+
T Consensus 110 ~~~p 113 (126)
T 3osg_A 110 LGIP 113 (126)
T ss_dssp TTC-
T ss_pred cCCC
Confidence 7643
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.90 E-value=4.1e-24 Score=178.02 Aligned_cols=103 Identities=23% Similarity=0.473 Sum_probs=90.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchh
Q 021816 21 LEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLE 100 (307)
Q Consensus 21 ~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~ 100 (307)
......+.||+|||++|..+|..|+.+ +|..||..|||||..||++||..+++ |..
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~--------- 77 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------PEV--------- 77 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------SSS---------
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------ccc---------
Confidence 345567899999999999999999964 59999999999999999999987654 221
Q ss_pred hhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHH
Q 021816 101 WVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180 (307)
Q Consensus 101 ~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky 180 (307)
+.++||+|||++|+.++++||. +|..||+ +||+||+.||++||..+
T Consensus 78 --------------------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 --------------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNST 123 (128)
T ss_dssp --------------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTT
T ss_pred --------------------------------ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHH
Confidence 2248999999999999999998 9999997 99999999999999865
Q ss_pred H
Q 021816 181 F 181 (307)
Q Consensus 181 ~ 181 (307)
+
T Consensus 124 ~ 124 (128)
T 1h8a_C 124 M 124 (128)
T ss_dssp T
T ss_pred H
Confidence 4
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.90 E-value=5.4e-24 Score=178.28 Aligned_cols=102 Identities=16% Similarity=0.389 Sum_probs=90.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhccC
Q 021816 26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNH 105 (307)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~~ 105 (307)
.+.||+|||++|..+|..|+.. +|..||..|||||..||++||...++ |..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~-------------- 52 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHLD------------PAV-------------- 52 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHTS------------TTC--------------
T ss_pred CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhccC------------ccc--------------
Confidence 4689999999999999999965 49999999999999999999998765 322
Q ss_pred CCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 106 GYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 106 ~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
+.++||+|||++|+.++.+||. +|..||. +|++||+.||++||+.++.+..
T Consensus 53 ---------------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 53 ---------------------------VKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp ---------------------------CCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGGC
T ss_pred ---------------------------cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence 1248999999999999999998 9999997 9999999999999998876654
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.87 E-value=3.3e-22 Score=172.00 Aligned_cols=102 Identities=23% Similarity=0.469 Sum_probs=89.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhh
Q 021816 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEW 101 (307)
Q Consensus 22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~ 101 (307)
.....+.||+|||.+|..++..|+.. +|..||..|||||..||++||..++. |..
T Consensus 54 p~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~---------- 108 (159)
T 1h89_C 54 PELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PEV---------- 108 (159)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------TTS----------
T ss_pred CCcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------ccc----------
Confidence 34467899999999999999999964 59999999999999999999987653 221
Q ss_pred hccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 102 VNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 102 ~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
+..+||+|||++|+.++++||. +|..||+ +||+||+.||++||+.++
T Consensus 109 -------------------------------~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 109 -------------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp -------------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred -------------------------------cccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 2358999999999999999998 9999997 999999999999998553
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.86 E-value=1.4e-22 Score=174.37 Aligned_cols=100 Identities=23% Similarity=0.467 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhcc
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN 104 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~ 104 (307)
..+.||+|||++|.++|..|+.+ +|..||+.|||||..||++||..+++ |..
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~------------- 56 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN------------PEL------------- 56 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTC------------TTC-------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccC------------CCc-------------
Confidence 46789999999999999999864 59999999999999999999987654 221
Q ss_pred CCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 105 HGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 105 ~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
+.++||+|||++|+.++++||.++|..||. ++++||+.||++||++|+
T Consensus 57 ----------------------------~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 ----------------------------IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp ----------------------------CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred ----------------------------CCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence 224899999999999999999878999997 999999999999998774
No 8
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.79 E-value=1.6e-19 Score=144.14 Aligned_cols=69 Identities=51% Similarity=0.890 Sum_probs=61.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCC
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGN 93 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~ 93 (307)
....||+|||++|++||+.|+.++++||.+||++|||||+.||++||+.|++||..||+|.+++|.|..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~ 75 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT 75 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 457899999999999999999999999999999999999999999999999999999999999999953
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.79 E-value=1.5e-19 Score=137.99 Aligned_cols=66 Identities=24% Similarity=0.574 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGY 91 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y 91 (307)
+....||.|||++|++||++||.++|+||++||++| |||+.||++||+.|++|+ .||+|.|++|.|
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~ 71 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence 346789999999999999999999999999999998 999999999999999996 689999999987
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=6.3e-17 Score=122.61 Aligned_cols=64 Identities=41% Similarity=0.651 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHD 198 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s~~k~~~r~s~hd 198 (307)
+..+||+|||++|++++++||. +|..||. +|++||+.||++||++|+++....+.+..+++||+
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 3459999999999999999999 9999997 99999999999999999999977677888899986
No 11
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=3e-16 Score=120.00 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=48.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
....||+||+++|++||+.|+.++|+||++||++|||||+.||++||..|..
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999999999999999999999999999999865
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=3.4e-16 Score=119.73 Aligned_cols=56 Identities=36% Similarity=0.605 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 021816 23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADI 78 (307)
Q Consensus 23 ~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV 78 (307)
+.....||.|||++|++||++|+.++++||.+||++|||||..||++||..|++||
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 34567899999999999999999999999999999999999999999999999875
No 13
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.62 E-value=2.5e-16 Score=130.85 Aligned_cols=73 Identities=22% Similarity=0.434 Sum_probs=44.9
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhccCCCCCCCCccccCCCCCCCCCcccccccCC
Q 021816 55 VAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKG 134 (307)
Q Consensus 55 IAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg 134 (307)
||+.|||||..||++||..+++ |.+ +.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~------------p~~-----------------------------------------~k 27 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLN------------PEL-----------------------------------------NK 27 (128)
T ss_dssp ---------------------C------------TTC-----------------------------------------CC
T ss_pred CccccCCCCHHHHHHHHHHhhC------------CCC-----------------------------------------CC
Confidence 7999999999999999987655 322 22
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
++||+|||++|+.+|++||.++|..||. ++++||+.||+.||.+|+
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence 4899999999999999999878999997 999999999999998764
No 14
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.59 E-value=1e-15 Score=144.90 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhh----------hhhhhcCCCCCCCCC---
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADI----------SNIEAGLIPLPGYGN--- 93 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV----------~~IEsG~v~~P~y~~--- 93 (307)
+.||..|...|++|+++||.+ +|+.||+.|+|||+.||+++|+.+++.. ..||.|...+..+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~ 187 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK 187 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999986 4999999999999999999999998876 568888655443221
Q ss_pred -----CCCcchhhhccC-CCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---Cchhcch---
Q 021816 94 -----SSPFTLEWVNNH-GYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGK---GDWRNIS--- 161 (307)
Q Consensus 94 -----~s~f~l~~~~~~-~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~---G~W~~Ia--- 161 (307)
.+.+..+|.... .|. . .++..||+|||+.||.+|.+||. |+|..|.
T Consensus 188 ~l~~Ki~~~~~P~~~L~i~y~--------------------~--~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 245 (304)
T 1ofc_X 188 ALDQKMSRYRAPFHQLRLQYG--------------------N--NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI 245 (304)
T ss_dssp HHHHHHHTCSSHHHHCCCCCT--------------------T--CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHhccccC--------------------C--CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 001111221110 000 0 14568999999999999999999 9999996
Q ss_pred h--------cccCCCCHHHHHHHHHHHHHH
Q 021816 162 R--------NFVTSRTPTQVASHAQKYFIR 183 (307)
Q Consensus 162 ~--------~~v~tRT~~Qv~sh~qky~~r 183 (307)
+ +||.+||+.+|..|++-++.-
T Consensus 246 r~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 246 RASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp HHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred HhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 2 699999999999999855443
No 15
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.58 E-value=1.7e-16 Score=121.04 Aligned_cols=49 Identities=43% Similarity=0.761 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
..+..||.||+|+||+||++|++++|+||++||+.|||||+.||+++|.
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999999996
No 16
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.51 E-value=5.2e-15 Score=147.30 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
...+||+||+.+|++||.+||+ +|..||. +|+|||..||++||++|.+|++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhC
Confidence 4669999999999999999999 9999997 8999999999999998877653
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=1.3e-14 Score=105.76 Aligned_cols=47 Identities=28% Similarity=0.577 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccC-CCCHHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT-SRTPTQVASHAQKYFI 182 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~-tRT~~Qv~sh~qky~~ 182 (307)
.+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||.
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence 4799999999999999999779999997 999 9999999999999974
No 18
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=9.4e-15 Score=107.01 Aligned_cols=49 Identities=24% Similarity=0.549 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816 134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR 183 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r 183 (307)
..+||+|||++|+++|++||.++|..||. +|++||+.||+.||++|+..
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHccC
Confidence 35899999999999999999779999997 99999999999999998754
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.49 E-value=2.7e-14 Score=101.21 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
.+||+|||++|++++++||.++|..||. +|++||+.||+.||++|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 5899999999999999999999999997 999999999999999886
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.5e-14 Score=108.78 Aligned_cols=50 Identities=40% Similarity=0.509 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC-----CchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 135 VPWTEEEHKLFLLGLKKHGK-----GDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~-----G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
.+||+|||++|+++|++||. ++|..||. +|++||+.||++||++|+.++.
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999999995 59999997 9999999999999999998765
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.45 E-value=5.6e-14 Score=99.71 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
++||+|||++|++++++||.++|..||. +|++||+.||+.||++|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 4899999999999999999878999997 999999999999999874
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7.4e-14 Score=104.93 Aligned_cols=50 Identities=20% Similarity=0.509 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
...+.||+|||++|..+|..|+.. +|..||..|||||..||++||..++.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 356789999999999999999954 59999999999999999999998665
No 23
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.43 E-value=8.3e-14 Score=107.82 Aligned_cols=46 Identities=35% Similarity=0.551 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky 180 (307)
...+||+|||++||++|++|| ++|.+||+ +|++||+.||+.||++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence 456899999999999999999 59999997 99999999999999866
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.43 E-value=1.3e-13 Score=98.38 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccC--CCCHHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT--SRTPTQVASHAQKYFI 182 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~--tRT~~Qv~sh~qky~~ 182 (307)
.+||+|||++|+.+|++||.++|..||. +++ +||+.||+.+|.+|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999889999997 899 9999999999998753
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.42 E-value=2.2e-13 Score=102.13 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=47.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccC--CCCHHHHHHHHHHHHHHH
Q 021816 131 RKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT--SRTPTQVASHAQKYFIRQ 184 (307)
Q Consensus 131 rkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~--tRT~~Qv~sh~qky~~r~ 184 (307)
+++..+||+|||++|+.+|++||.++|..||. +++ +||+.||+.||..|+...
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCCC
Confidence 34556999999999999999999889999997 999 999999999999887654
No 26
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=1.4e-13 Score=100.44 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFI 182 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~ 182 (307)
+..+||+|||++|++++++||.++|..||. +|++||+.||+.||++|+.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcC
Confidence 345899999999999999999779999997 9999999999999998753
No 27
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=6.2e-13 Score=101.01 Aligned_cols=65 Identities=32% Similarity=0.541 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC--ChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDS--PDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGY 91 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~t--pdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y 91 (307)
.....||+|||++|+++|+.|+.++ +.+|.+||++|||||..||++||..++..+ +..| .++|++
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~--~k~g-~~~pg~ 72 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL--TKAG-IPVSGP 72 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG--STTC-SCCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH--HhcC-CCCCCC
Confidence 4567899999999999999999765 378999999999999999999997776532 3333 345554
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.39 E-value=4e-13 Score=99.97 Aligned_cols=49 Identities=29% Similarity=0.464 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccC--CCCHHHHHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT--SRTPTQVASHAQKYFI 182 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~--tRT~~Qv~sh~qky~~ 182 (307)
+..+||+|||++|+++|++||.++|..||. +++ +||+.||+.+|+.+.+
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence 345899999999999999999889999997 655 9999999999987753
No 29
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.35 E-value=5e-12 Score=115.77 Aligned_cols=135 Identities=10% Similarity=0.203 Sum_probs=91.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC--CChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhh
Q 021816 25 KSTRWTAAENKMFENALAVYDKD--SPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWV 102 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~--tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~ 102 (307)
....||+|||++|.+++.+||.. ++..|..||..|||||..+|++||..++.. .++-. ...+.... ...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~--~ln~v-y~~ded~~---Li~--- 77 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK--RLEYV-YEVDKFGK---LVR--- 77 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG--GCCCE-ECBCTTSC---BCB---
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh--hcccc-cccCcchh---hhh---
Confidence 45689999999999999999863 234499999999999999999999987763 12210 11111100 000
Q ss_pred ccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHH-h-----------------------------
Q 021816 103 NNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKK-H----------------------------- 152 (307)
Q Consensus 103 ~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~k-y----------------------------- 152 (307)
+..|. +....-..+ ..| ..||.|||-+|+..+++ |
T Consensus 78 ------------d~~Gn-~ikis~lp~-siK-~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~ 142 (246)
T 1ign_A 78 ------------DDDGN-LIKTKVLPP-SIK-RKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRN 142 (246)
T ss_dssp ------------CTTSC-BCEESSCCC-CSC-CCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------
T ss_pred ------------ccCCC-ceeeeccCc-ccc-CccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhh
Confidence 00011 111111111 112 37999999999999988 2
Q ss_pred ---C------------------------CCchhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816 153 ---G------------------------KGDWRNISRNFVTSRTPTQVASHAQKYFIRQ 184 (307)
Q Consensus 153 ---G------------------------~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~ 184 (307)
| .+.|..||+ ++|+||...+|++|.|+.+..
T Consensus 143 ~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 143 MTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp ------------------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCccccccCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence 1 136999997 999999999999999887665
No 30
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.1e-13 Score=99.20 Aligned_cols=48 Identities=21% Similarity=0.503 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
+..+||+|||++|+.+|++||.++|..||. +|++||+.||+.||++|+
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHc
Confidence 445899999999999999999779999997 999999999999998774
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.33 E-value=6.6e-13 Score=102.74 Aligned_cols=57 Identities=26% Similarity=0.443 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH-HHhhhhhhhc
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL-EADISNIEAG 84 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L-~~dV~~IEsG 84 (307)
.....||+|||++|++||.+|+ + +|.+||.+|++||..||+.||..+ ++|+..+|++
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~---~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~ 73 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-D---DWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSD 73 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-S---CHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-C---CHHHHHHHcCCCCHHHHHHHHHHhcccccccccCC
Confidence 4567899999999999999999 3 599999999999999999999987 6655444443
No 32
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=1.6e-12 Score=99.24 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
...+||.|||++|+.+|.+||.+ +|.+||. +||+||..||++||+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 44689999999999999999943 8999997 999999999999998653
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=4.7e-12 Score=92.56 Aligned_cols=50 Identities=28% Similarity=0.346 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
.....||+|||++|.+||..|+.+ +|.+||+.|||||..||++||..++.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 356789999999999999999964 49999999999999999999998764
No 34
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.7e-12 Score=93.62 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=44.8
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816 127 AEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ 178 (307)
Q Consensus 127 ~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q 178 (307)
.+.+|+...+||+|||++|++++.+||+ +|..||. +|++||..||..||.
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLYYY 54 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HCTTSCHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHH
Confidence 3456677789999999999999999998 9999996 999999999999853
No 35
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.28 E-value=6.4e-12 Score=88.92 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
..+.||+|||++|.++|..|+.+ +|..||..|||||..||++||..+++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999964 49999999999999999999998875
No 36
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.8e-12 Score=93.49 Aligned_cols=59 Identities=20% Similarity=0.446 Sum_probs=52.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhc
Q 021816 21 LEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAG 84 (307)
Q Consensus 21 ~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG 84 (307)
........||+|||++|.+++..|+. +|.+||. +||||..||++||..++.....+|+|
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 34556789999999999999999986 4999999 88999999999999999987777765
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.94 E-value=3.5e-13 Score=106.22 Aligned_cols=51 Identities=37% Similarity=0.488 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
+.++||+|||++|++++.+||. +|..||. +|++||+.||++||+.|++++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3458999999999999999999 9999997 9999999999999999988764
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.26 E-value=7.4e-12 Score=97.81 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhcchhc---ccCCCCHHHHHHHHHHHHHHHh
Q 021816 136 PWTEEEHKLFLLGLKKHGKGDWRNISRN---FVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~---~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
+||+|||+.|+++|++||.|+|+.|++. ++++||+.||+++|.+++++..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999974 3799999999999999887654
No 39
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.3e-12 Score=93.29 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhc
Q 021816 134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS 186 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s 186 (307)
..+||+|||++|+.++++||. +|..||. +++||+.||++||+.|+.....
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhc
Confidence 358999999999999999999 9999996 6689999999999999888754
No 40
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.25 E-value=9.4e-12 Score=88.13 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
..+.||+|||++|.++|..|+.. +|..||..|||||..||++||..+++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999964 49999999999999999999998764
No 41
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=1.4e-11 Score=89.67 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
.....||+|||++|.++|..|+.. +|..||.+|||||..||++||..++.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 456789999999999999999954 49999999999999999999998765
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.24 E-value=1.1e-11 Score=100.76 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=48.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcc---cCCCCHHHHHHHHHHHHHHH
Q 021816 130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQ 184 (307)
Q Consensus 130 erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~---v~tRT~~Qv~sh~qky~~r~ 184 (307)
.+++..+||+|||+.|+++|++||.|+|..|++.+ +++||+.+|+.+|.++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34566799999999999999999999999999743 38999999999999887654
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.23 E-value=1.3e-11 Score=89.83 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-CCCHHHHHHHHHHH
Q 021816 26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-GKTVVDVIKQYKEL 74 (307)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-GRT~~qc~~rY~~L 74 (307)
...||+|||++|.++|.+|+.+ +|..||++|| |||..||++||..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5679999999999999999964 4999999999 99999999999875
No 44
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.23 E-value=2.7e-11 Score=90.02 Aligned_cols=50 Identities=18% Similarity=0.542 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP--GKTVVDVIKQYKELEA 76 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP--GRT~~qc~~rY~~L~~ 76 (307)
.....||+|||++|.++|.+|+.+ +|..||+.+| |||..||++||..++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999965 4999999977 9999999999998876
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.19 E-value=3.2e-11 Score=100.33 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=49.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcc---cCCCCHHHHHHHHHHHHHHHh
Q 021816 130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 130 erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~---v~tRT~~Qv~sh~qky~~r~~ 185 (307)
.+++..+||+|||+.|+++|++||.|+|..|++.+ +++||+.||+++|..+++...
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 34566799999999999999999999999999843 489999999999999887654
No 46
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.18 E-value=4.9e-11 Score=84.91 Aligned_cols=48 Identities=17% Similarity=0.423 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 021816 26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP--GKTVVDVIKQYKELEA 76 (307)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP--GRT~~qc~~rY~~L~~ 76 (307)
.+.||+|||.+|..+|+.||.+ +|..||..|| |||..||++||..++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5789999999999999999964 4999999999 9999999999998763
No 47
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.18 E-value=4.8e-11 Score=99.43 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=49.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcc---cCCCCHHHHHHHHHHHHHHHh
Q 021816 130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 130 erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~---v~tRT~~Qv~sh~qky~~r~~ 185 (307)
.+++..+||+|||+.|+++|++||.|+|..|++.+ +++||..||+.+|.++++...
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34566799999999999999999999999999743 389999999999999887654
No 48
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=5.5e-11 Score=89.78 Aligned_cols=51 Identities=29% Similarity=0.619 Sum_probs=46.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 021816 23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEAD 77 (307)
Q Consensus 23 ~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~d 77 (307)
......||+|||++|.+++..||. +|..||.+|||||..||+.||..++..
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999997 499999999999999999999988764
No 49
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=92.90 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ 178 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q 178 (307)
+.++||+|||++|++++++||. +|..||+ ++ +||+.||++||+
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 3359999999999999999999 7999997 78 999999999987
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.16 E-value=7.2e-11 Score=98.25 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=71.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCC
Q 021816 21 LEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI----PGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSP 96 (307)
Q Consensus 21 ~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v----PGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~ 96 (307)
........||.|||..|..+|.+||.+ +|..||..+ +|||..||++||..++.-. .++ |.
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~-~~~------p~------ 75 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SIA------PQ------ 75 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH-HTC------ST------
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhhh-ccC------Cc------
Confidence 345667899999999999999999975 599999984 8999999999999987621 000 10
Q ss_pred cchhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhc
Q 021816 97 FTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRN 159 (307)
Q Consensus 97 f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~ 159 (307)
.+++.+|++||+.+++.+...+|. +|.+
T Consensus 76 ----------------------------------~krg~~~p~e~~~rv~~~h~~~gn-~~~~ 103 (121)
T 2juh_A 76 ----------------------------------QRRGEPVPQDLLDRVLAAHAYWSQ-QQGK 103 (121)
T ss_dssp ----------------------------------TCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred ----------------------------------ccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence 123459999999999999999998 7776
No 51
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.15 E-value=2.7e-11 Score=96.94 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
++||+|||++|+.+|++||.++|..||. ++++||+.||+.||++|+
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence 4899999999999999999889999997 999999999999998763
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=99.11 E-value=1e-10 Score=113.25 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-CCCHHHHHHHHHHHHHh----------hhhhhhcCCCCCCCCC--
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-GKTVVDVIKQYKELEAD----------ISNIEAGLIPLPGYGN-- 93 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-GRT~~qc~~rY~~L~~d----------V~~IEsG~v~~P~y~~-- 93 (307)
+.||+-|-..|.+|+++||.+. ...||+.|. |||..||.++++.++.. +..||.|...+-....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~ 200 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ 200 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999864 999999998 99999999888887764 3345554322111000
Q ss_pred ------CCCcchhhhccC-CCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---Cchhcch--
Q 021816 94 ------SSPFTLEWVNNH-GYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGK---GDWRNIS-- 161 (307)
Q Consensus 94 ------~s~f~l~~~~~~-~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~---G~W~~Ia-- 161 (307)
.+.+..+|.... .|.+ . + .++..||+|||+.||.+|.+||. |.|..|-
T Consensus 201 ~~L~~Ki~~y~~P~~~L~i~y~~-------~-----------~--~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~ 260 (374)
T 2y9y_A 201 EALRRKLSEYKNPFFDLKLKHPP-------S-----------S--NNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDE 260 (374)
T ss_dssp HHHHHHHTTCSSHHHHCCCSSCC-------C-----------C--SSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred HHHHHHHHHccCCHHHceeccCC-------C-----------C--CCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 011112232211 1111 0 0 13457999999999999999999 9999994
Q ss_pred ---------hcccCCCCHHHHHHHHHHHHHHH
Q 021816 162 ---------RNFVTSRTPTQVASHAQKYFIRQ 184 (307)
Q Consensus 162 ---------~~~v~tRT~~Qv~sh~qky~~r~ 184 (307)
.+|+.+||+.+|..|+.-++.-.
T Consensus 261 Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 261 IRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp HHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 56799999999999998554443
No 53
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=85.32 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=43.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL 74 (307)
Q Consensus 22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L 74 (307)
+......||+||+++|++++++||.+ |.+||++||+||+.||+++|...
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence 34456789999999999999999964 99999999999999999999754
No 54
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.11 E-value=3.1e-11 Score=109.70 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||++|.+|++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999 9999997 9999999999999998877643
No 55
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.10 E-value=2.1e-10 Score=85.83 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP--GKTVVDVIKQYKELEA 76 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP--GRT~~qc~~rY~~L~~ 76 (307)
.....||+|||.+|..+|..||.+ +|..||..|| |||..||++||..++.
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 456889999999999999999964 4999999999 9999999999999887
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.09 E-value=9.7e-11 Score=93.30 Aligned_cols=49 Identities=33% Similarity=0.548 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQKYFIRQ 184 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~ 184 (307)
.+||.|||++|+.+|.+||.+ +|.+||. +||+||..||++||+.+....
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999843 7999997 999999999999999887654
No 57
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.07 E-value=9e-11 Score=94.62 Aligned_cols=46 Identities=30% Similarity=0.490 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
++||+|||++|+.+|++||.++|..||. +|++||+.||+.||.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence 3799999999999999999889999997 999999999999998774
No 58
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.06 E-value=1.3e-10 Score=96.75 Aligned_cols=46 Identities=28% Similarity=0.501 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
++||+|||++|+.+|++||.++|..||. +|++||+.||+.||++|+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhcc
Confidence 3899999999999999999889999997 999999999999998875
No 59
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.05 E-value=1.5e-10 Score=95.89 Aligned_cols=47 Identities=26% Similarity=0.503 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
+.++||+|||++|+.+|++||. +|..||. ++++||+.||+.||.+|+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhc
Confidence 4458999999999999999998 9999997 999999999999999875
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.05 E-value=1.4e-10 Score=85.87 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchh--cccCCCCHHHHHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISR--NFVTSRTPTQVASHAQKYFI 182 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~--~~v~tRT~~Qv~sh~qky~~ 182 (307)
+..+||+||++.|++||++||. +|..|+. .|+++||.+.++++|..+.+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 3458999999999999999999 9999993 28899999999999886543
No 61
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.04 E-value=1.1e-09 Score=91.16 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCc
Q 021816 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI----PGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPF 97 (307)
Q Consensus 22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v----PGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f 97 (307)
.......||.|||+.|..+|.+||.+ +|..|+... +|||..||++||..++.-- .+..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~-----------~~~p---- 88 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA-----------SIAP---- 88 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH-----------HSCT----
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-----------cCCc----
Confidence 34567899999999999999999976 599999974 8999999999999987510 0100
Q ss_pred chhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHH-HHHHHHHHHHhCCC
Q 021816 98 TLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEE-HKLFLLGLKKHGKG 155 (307)
Q Consensus 98 ~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EE-d~llL~~l~kyG~G 155 (307)
. .+.+.|+++| +.+++.+...||..
T Consensus 89 --------------------------------~-~kr~~~~p~e~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 89 --------------------------------Q-QRRGAPVPQELLDRVLAAQAYWSVD 114 (122)
T ss_dssp --------------------------------T-TCCCSSCCHHHHHHHHHHHHHHHSS
T ss_pred --------------------------------c-ccCCCCCCHHHHHHHHHHHHHHhhH
Confidence 0 1224899999 78999999999973
No 62
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=3e-10 Score=86.69 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=45.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 19 WLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 19 w~~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
.|......+.||+|||++|.++++.||.. |..||..| |||..||++||..|..
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 44456778999999999999999999964 99999999 9999999999997754
No 63
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=80.60 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHA 177 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~ 177 (307)
+..+||+||+++|+++|.+||+ +|..|++++|++||..||..+|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence 4468999999999999999999 9999997579999999999875
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=4.9e-10 Score=85.58 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CchhcchhcccCCCCHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKHGK---GDWRNISRNFVTSRTPTQVASHAQKY 180 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~---G~W~~Ia~~~v~tRT~~Qv~sh~qky 180 (307)
..||+||+++|+.+|..|++ ++|.+||. +|++||..+|+.||+.+
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 47999999999999999997 47999997 99999999999998754
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.90 E-value=1.1e-09 Score=83.24 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHHH
Q 021816 134 GVPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQKY 180 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qky 180 (307)
..+||.||+++|..+|.+|+.| +|.+||. ++ +||..||++||+++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence 3589999999999999999954 7999997 77 89999999999876
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.88 E-value=2.7e-08 Score=88.21 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh--CCCCCHHHHHHHHHHHHHh
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAM--IPGKTVVDVIKQYKELEAD 77 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~--vPGRT~~qc~~rY~~L~~d 77 (307)
.-..||+.|-..|.+|+.+||.. .+||+.|++. |.+||..+|.+.|..+..-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 34679999999999999999942 3689999964 7899999999988877654
No 67
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.82 E-value=7e-09 Score=78.28 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ 178 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q 178 (307)
...+||+||.++|+++|.+||+ +|..|++++|++||..||..+|-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence 3458999999999999999999 99999975799999999999863
No 68
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=9e-09 Score=76.08 Aligned_cols=47 Identities=26% Similarity=0.466 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHh-hCCCCCHHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAA-MIPGKTVVDVIKQYKELE 75 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa-~vPGRT~~qc~~rY~~L~ 75 (307)
....||+||.++|+++|++||.+ |.+||+ +||+||+.||++.|....
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhccc
Confidence 45689999999999999999986 999998 699999999999997543
No 69
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.29 E-value=5.4e-10 Score=87.93 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=45.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
.....+.||+|||.+|.+++..||. +|..||.+|||||..||++||..++.
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 3446778999999999999999986 49999999999999999999987765
No 70
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.80 E-value=2.5e-08 Score=77.73 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAM----IPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~----vPGRT~~qc~~rY~~L~~ 76 (307)
..||+|||..|..+|.+||.+ +|..|+.. |+|||..||++||..++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 469999999999999999976 59999996 899999999999999876
No 71
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.71 E-value=5.1e-09 Score=95.98 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc-----hhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGD-----WRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~-----W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
.+||+|||++||+++++||..+ |..||+ ++++||+.||++||..|+.+..
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhhc
Confidence 4899999999999999999843 999997 9999999999999999887653
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.71 E-value=2.2e-09 Score=81.90 Aligned_cols=44 Identities=32% Similarity=0.705 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHH
Q 021816 134 GVPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQ 178 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~q 178 (307)
+.+||.||+++|..+|.+|+++ +|.+||. .||+||..+|+.||+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence 4589999999999999999987 8999997 999999999999986
No 73
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.68 E-value=3.3e-08 Score=74.55 Aligned_cols=46 Identities=30% Similarity=0.609 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHh-hCCCCCHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAA-MIPGKTVVDVIKQYKEL 74 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa-~vPGRT~~qc~~rY~~L 74 (307)
....||+||.++|+++|++||.+ |..||+ +||+||+.||++.|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhh
Confidence 34679999999999999999986 999999 69999999999999843
No 74
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.62 E-value=6.7e-08 Score=71.97 Aligned_cols=54 Identities=33% Similarity=0.390 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCC--chhcchhcc--cCCCCHHHHHHHHHHHHHHHhc
Q 021816 132 KKGVPWTEEEHKLFLLGLKKHGKG--DWRNISRNF--VTSRTPTQVASHAQKYFIRQLS 186 (307)
Q Consensus 132 kKg~pWT~EEd~llL~~l~kyG~G--~W~~Ia~~~--v~tRT~~Qv~sh~qky~~r~~s 186 (307)
+.+..||+|.|+.|+++|+.+|.. -++.|-+ + |++.|..+|+||.|||+..+..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 456789999999999999999942 2778875 5 5688999999999999988763
No 75
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.57 E-value=1.1e-07 Score=77.21 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=46.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 021816 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI----PGKTVVDVIKQYKELEA 76 (307)
Q Consensus 22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v----PGRT~~qc~~rY~~L~~ 76 (307)
.......||.|||..|..+|.+||.+ +|..|+..+ +|||..||+++|..++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 44567899999999999999999976 599999966 89999999999999886
No 76
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.51 E-value=2.2e-07 Score=68.77 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHH---hhCCCCCHHHHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVA---AMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIA---a~vPGRT~~qc~~rY~~L~~ 76 (307)
..+..||+||++.|.+.|.+||.. |..|+ .++++||..+++++|..|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 356789999999999999999973 99999 57889999999999998865
No 77
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.50 E-value=9.5e-08 Score=86.95 Aligned_cols=49 Identities=27% Similarity=0.482 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
.....||+||+++|+.|++.|+.+ |..||..|++||+.||+.+|.....
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999976 9999999999999999999987554
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.47 E-value=2.2e-07 Score=73.89 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 021816 26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELE 75 (307)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~ 75 (307)
...||+||..+|++++..||++ |.+||++||+||+.||+++|....
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhccc
Confidence 4689999999999999999986 999999999999999999997543
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.41 E-value=2.4e-07 Score=73.69 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=40.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHH
Q 021816 132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHA 177 (307)
Q Consensus 132 kKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~ 177 (307)
.....||+||+++|++++..||+ +|..|+. ++++||..||-.+|
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTT-CHHHHHH-TCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence 34468999999999999999999 9999996 99999999999985
No 80
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.89 E-value=1e-05 Score=59.06 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHh--------CCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816 135 VPWTEEEHKLFLLGLKKH--------GKGDWRNISRNFVTSRTPTQVASHAQKYF 181 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~ky--------G~G~W~~Ia~~~v~tRT~~Qv~sh~qky~ 181 (307)
.+||+|||..|++.|.+| |..-|+.|++..++.+|-.+++.||.|++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 589999999999999999 65579999975799999999999998864
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.85 E-value=1.6e-05 Score=79.32 Aligned_cols=48 Identities=27% Similarity=0.491 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
....||.||..+|+.+|.+||.+ |..||..|++||+.||+.+|.....
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999986 9999999999999999999976433
No 82
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.82 E-value=0.00019 Score=66.87 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAM--IPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~--vPGRT~~qc~~rY~~L~~ 76 (307)
..+.||+.|...|.+++-+||.- .+||+.|++. |+.|+..++++-|..|.+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 35789999999999999999953 3589999754 668999998888877654
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.75 E-value=4e-05 Score=60.92 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhccc-----CCCCHHHHHHHHHHHHHHHhc
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFV-----TSRTPTQVASHAQKYFIRQLS 186 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v-----~tRT~~Qv~sh~qky~~r~~s 186 (307)
.+||.||...|++++++||. +|..|+. .+ ++||..++++++....+++..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999 9999997 55 589999999998877777753
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.74 E-value=7.5e-05 Score=59.32 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHHHHhhh
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMI-----PGKTVVDVIKQYKELEADIS 79 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v-----PGRT~~qc~~rY~~L~~dV~ 79 (307)
..||.||+..|.+++..|+. ||..|+..+ ++||+.++++||..+...+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999997 599999999 58999999999998877554
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.65 E-value=8e-05 Score=58.88 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
..||+|||+.+..++..-+.. ++.|..||..|.+|++.||.+||++|..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s-~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQ-PHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSC-TTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCC-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 479999999999999987753 6789999999999999999999999876
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.53 E-value=0.00015 Score=57.27 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 133 KGVPWTEEEHKLFLLGLKKHGK--GDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 133 Kg~pWT~EEd~llL~~l~kyG~--G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
+.+-||.|||+.||...++-|. ..|..||. .+.+|++.||++|+|.++....
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999985 27999997 8999999999999998877665
No 87
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.47 E-value=0.00027 Score=51.37 Aligned_cols=50 Identities=8% Similarity=0.157 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-----CChhHHHHHh-hCCCCCHHHHHHHHHHHH
Q 021816 26 STRWTAAENKMFENALAVYDKD-----SPDRWQKVAA-MIPGKTVVDVIKQYKELE 75 (307)
Q Consensus 26 ~~~WT~EEdk~Le~Ala~y~~~-----tpdRW~kIAa-~vPGRT~~qc~~rY~~L~ 75 (307)
+..+|+|||++|...|+.|... ...-|..+|+ .+|++|-..|++||.+-+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999998432 3457999999 899999999999998754
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.51 E-value=2.3e-05 Score=58.83 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
-.||+|||+.+..++.+-|.. ++.|..||..| +||+.||.+||..|..
T Consensus 15 vlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 469999999999988877753 57799999999 8999999999999865
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.16 E-value=7.9e-05 Score=55.97 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816 134 GVPWTEEEHKLFLLGLKKHGK--GDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG~--G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~ 185 (307)
..-||.|||+.||..+++-|. ..|..||. .+ +||+.||.++++.++....
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 457999999999999999986 26999997 66 9999999999997765543
No 90
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.91 E-value=0.0026 Score=50.43 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-----CCCHHHHHHHHHHHHHhhhh
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-----GKTVVDVIKQYKELEADISN 80 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-----GRT~~qc~~rY~~L~~dV~~ 80 (307)
..||.||...|-.++..|+. ||..|+.... .||++|+++||..+...+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999997 5999999885 69999999999988776543
No 91
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.61 E-value=0.0034 Score=48.09 Aligned_cols=56 Identities=11% Similarity=0.311 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC------CCCChhHHHHHhhCC----CCCHHHHHHHHHHHHHhhhh
Q 021816 25 KSTRWTAAENKMFENALAVYD------KDSPDRWQKVAAMIP----GKTVVDVIKQYKELEADISN 80 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~------~~tpdRW~kIAa~vP----GRT~~qc~~rY~~L~~dV~~ 80 (307)
....||.+|..+|+.+..... ......|+.||..|- .||+.||..+|+.|...-+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999887522 122357999999875 69999999999999886443
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.51 E-value=0.003 Score=59.73 Aligned_cols=48 Identities=27% Similarity=0.499 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQ 184 (307)
Q Consensus 136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~ 184 (307)
.||..+...|+.|+.+||+.+|..||. .|+++|+.+|+.+++-++.|-
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence 499999999999999999999999997 999999999999988666554
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.93 E-value=0.013 Score=46.51 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhccc----CCCCHHHHHHHHHHHHHHHhc
Q 021816 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFV----TSRTPTQVASHAQKYFIRQLS 186 (307)
Q Consensus 135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v----~tRT~~Qv~sh~qky~~r~~s 186 (307)
..||.||-..|++++++|+. +|--|+..|- +.||..+++.|+-...+++..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 9999996443 479999999998888777753
No 94
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.84 E-value=0.0092 Score=45.63 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CC-----chhcchhcccC----CCCHHHHHHHHHHHHHHHh
Q 021816 134 GVPWTEEEHKLFLLGLKKHG----KG-----DWRNISRNFVT----SRTPTQVASHAQKYFIRQL 185 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG----~G-----~W~~Ia~~~v~----tRT~~Qv~sh~qky~~r~~ 185 (307)
+..||.+|-.+||.+...+- .+ .|..||. .+. .||+.||+..|..+...-.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45799999999999987522 11 6999996 432 7999999999986655543
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.02 E-value=0.021 Score=50.00 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCchhcchhc-ccCCCCHHHHHHHHHHHHHH
Q 021816 134 GVPWTEEEHKLFLLGLKKHG--KGDWRNISRN-FVTSRTPTQVASHAQKYFIR 183 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG--~G~W~~Ia~~-~v~tRT~~Qv~sh~qky~~r 183 (307)
...||+.|-+.|+.++.+|| .++|..|+.. -+..||...|+..+..+..+
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 34799999999999999999 6799999852 26799999999887765544
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.15 E-value=0.2 Score=36.92 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh--CCCCCHHHHHHHHHHHHHh
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAM--IPGKTVVDVIKQYKELEAD 77 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~--vPGRT~~qc~~rY~~L~~d 77 (307)
..+-.||+|..+.|..||...|.+. --+..|.+. ++|.|..+|.-|.++.--.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~-AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVER-AVPKKILDLMNVDKLTRENVASHLQKFRVA 59 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTT-CCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCC-CCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999998431 236677666 4689999999887765443
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=89.25 E-value=0.42 Score=46.27 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhcchhcccC-CCCHHHHHHHHHHHHHH
Q 021816 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVT-SRTPTQVASHAQKYFIR 183 (307)
Q Consensus 136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~-tRT~~Qv~sh~qky~~r 183 (307)
.||.-+=..|+.|+.+||+.+-..||. .|. ++|+.+|+.+++-++.|
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHh
Confidence 499999999999999999999999997 787 99999999888765554
No 98
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=72.41 E-value=13 Score=28.59 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-Cchhc--------------chh----cccCCCCHHHHHHHHHHHHHHH
Q 021816 134 GVPWTEEEHKLFLLGLKKHGK-GDWRN--------------ISR----NFVTSRTPTQVASHAQKYFIRQ 184 (307)
Q Consensus 134 g~pWT~EEd~llL~~l~kyG~-G~W~~--------------Ia~----~~v~tRT~~Qv~sh~qky~~r~ 184 (307)
..-|.++=+..|+++|..|.+ |.++- ||. ..-..||..||.||-| .+++.
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQ-vlk~~ 74 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ-VLARR 74 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHH-HHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHH-HHHHH
Confidence 346999999999999999964 22221 221 1236899999999988 34443
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=70.30 E-value=3.6 Score=38.05 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh
Q 021816 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAM 58 (307)
Q Consensus 27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~ 58 (307)
+.|+.+||..|...|.+||-+. |+.|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~---We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGS---WTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTC---HHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCc---HHHHhcC
Confidence 6799999999999999999986 9999864
No 100
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=44.18 E-value=52 Score=25.15 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC------------ChhHHHHHhhCC-----CCCHHHHHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDS------------PDRWQKVAAMIP-----GKTVVDVIKQYKELEA 76 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~t------------pdRW~kIAa~vP-----GRT~~qc~~rY~~L~~ 76 (307)
....|.++=+..|.+||+.|+... +.|-+.||.+|- -||.+||--|-+.|.+
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~ 73 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 73 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHH
Confidence 457899999999999999998542 234455665553 4788888877776554
No 101
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.00 E-value=1.1e+02 Score=21.87 Aligned_cols=54 Identities=6% Similarity=0.038 Sum_probs=40.3
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 021816 19 WLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKE 73 (307)
Q Consensus 19 w~~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~ 73 (307)
.+.........|.+....|+.++...+.-+...=..||..+ |-|..+|..=|..
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 58 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSD 58 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHH
Confidence 33444557889999999999999876554455567899988 7999988765543
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.73 E-value=29 Score=27.48 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=21.3
Q ss_pred chhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816 156 DWRNISRNFVTSRTPTQVASHAQKYFIR 183 (307)
Q Consensus 156 ~W~~Ia~~~v~tRT~~Qv~sh~qky~~r 183 (307)
.|..|++ .+.--....++.||.+|+..
T Consensus 72 ~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 72 QWSMVAQ-RLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp CHHHHHH-HHTSCCTTHHHHHHHHHHSH
T ss_pred cHHHHHH-HhCCChHHHHHHHHHHHHHH
Confidence 7999997 56544478999999998654
No 103
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=31.92 E-value=78 Score=24.36 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=33.9
Q ss_pred cccccCCCCCCHHH-----------HHHHHHHHHHhCC----------CchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816 128 EHERKKGVPWTEEE-----------HKLFLLGLKKHGK----------GDWRNISRNFVTSRTPTQVASHAQKYFIR 183 (307)
Q Consensus 128 ~~erkKg~pWT~EE-----------d~llL~~l~kyG~----------G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r 183 (307)
+.+-.+++.||.|+ -+-|+.-|+.+|. |+-++|+ .|+...|+..-|.++|--
T Consensus 7 ~~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVa----KtanK~qLiaAY~~lfE~ 79 (88)
T 2lc3_A 7 EKENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIR----KNRNCSQLIAAYKDFCEH 79 (88)
T ss_dssp HHCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHH----HHSCHHHHHHHHHHHHHH
T ss_pred ccccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHH----hcCcHHHHHHHHHHHHhc
Confidence 34445678999999 2356666777664 2233333 478888888877777754
No 104
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.26 E-value=74 Score=25.87 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 32 AENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 32 EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
+-|..+..+|...+.- -|..||+.+ |-|...|.+|.+.|.+
T Consensus 3 ~~d~~il~~L~~~~~~---s~~~la~~l-g~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 3 RLDRKILRILQEDSTL---AVADLAKKV-GLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHHTTCSCS---CHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3455666666655443 499999999 7999999999999876
No 105
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=26.56 E-value=1.9e+02 Score=21.28 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
+.....|.+....|+++++..+--+...=+.||..+ |-|..||..=|.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFq 52 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFG 52 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhH
Confidence 356789999999999999976655556677899988 799999876444
No 106
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=25.77 E-value=1.6e+02 Score=19.93 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
......|.+....|+.+....+.-+...-..||..+ |-|..+|.-=|.
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 52 (61)
T 2hdd_A 5 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL-GLNEAQIKIWFK 52 (61)
T ss_dssp --CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHhh
Confidence 456779999999999999876554445567899988 788888865443
No 107
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=23.95 E-value=41 Score=31.17 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=24.4
Q ss_pred hCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 021816 152 HGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKR 192 (307)
Q Consensus 152 yG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s~~k~~~ 192 (307)
||+|.|+-+-- .||.+||.+.|...++..|..+
T Consensus 218 HGkgHyRvV~y--------s~v~nHAdRv~at~ks~~K~~~ 250 (312)
T 2gu0_A 218 HGKRHWRLVLH--------SQLMSHAERLDRKIKSDKKHGR 250 (312)
T ss_dssp SSSSEEEEEEG--------GGHHHHHHHHHHHHHCCC----
T ss_pred cCCccEEEEeh--------HHhhhhHHHHHHHHhhhhhcCC
Confidence 78888887752 5899999999999998766554
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=23.88 E-value=54 Score=25.98 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=19.3
Q ss_pred chhcchhcccCCCC----HHHHHHHHHHHHHHH
Q 021816 156 DWRNISRNFVTSRT----PTQVASHAQKYFIRQ 184 (307)
Q Consensus 156 ~W~~Ia~~~v~tRT----~~Qv~sh~qky~~r~ 184 (307)
.|..|++ .+.--. ..+++.||.+|+...
T Consensus 63 ~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 63 RWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp THHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred cHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 7999997 553221 457999999875543
No 109
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=23.79 E-value=1.7e+02 Score=19.67 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
....+|.+....|+.+....+.-+...=..||..+ |-|..+|..=|.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 48 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI-GLTEARIQVWFQ 48 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CcCHHHHHHHhh
Confidence 35679999999999999875543434456889988 789988875444
No 110
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.57 E-value=2e+02 Score=20.50 Aligned_cols=49 Identities=20% Similarity=0.106 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKE 73 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~ 73 (307)
.....+|.+....|+.++...+.-+...-..||..+ |-|..+|..=|..
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 57 (80)
T 2dms_A 9 RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-NLPESRVQVWFKN 57 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHhhhhhHH
Confidence 456789999999999999876554445567899988 7999988765543
No 111
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=1.9e+02 Score=20.08 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
.....+|.+....|+.++...+.-+...-..||..+ |-|..+|..=|.
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 56 (70)
T 2dmu_A 9 RHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV-HLREEKVEVWFK 56 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCHHHeehccc
Confidence 456779999999999999876554445567899988 789998876443
No 112
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.36 E-value=1.5e+02 Score=22.05 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCC---------------CCHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPG---------------KTVVDVIKQYKE 73 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPG---------------RT~~qc~~rY~~ 73 (307)
.....||.++...|+.++...+.-+...-+.||..+ + -|..+|..=|+.
T Consensus 9 r~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqN 72 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFAN 72 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHH
Confidence 356689999999999999875544444567888887 4 778887765544
No 113
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.46 E-value=2e+02 Score=19.99 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
.....+|.+....|+.++...+.-+...-..||..+ |-|..+|..=|.
T Consensus 9 r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 56 (70)
T 2e1o_A 9 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML-QLSERQVKTWFQ 56 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CCCHHHhhHhhH
Confidence 346789999999999999876554445567899988 799998876544
No 114
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.06 E-value=2.2e+02 Score=20.35 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKE 73 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~ 73 (307)
.....+|.+....|+.++...+.-+...=..||..+ |-|..+|.-=|.+
T Consensus 19 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqN 67 (80)
T 2dmt_A 19 RSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-GLSQLQVKTWYQN 67 (80)
T ss_dssp CSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHeeeccHH
Confidence 345679999999999999876554444567899988 7899988765543
No 115
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.52 E-value=2.2e+02 Score=20.19 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 23 ~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
......+|.+....|+.++...+.-+...-..||..+ |-|..+|..=|.
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFq 56 (80)
T 2dmq_A 8 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQ 56 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccH
Confidence 3456789999999999999876554445567899998 789988875443
No 116
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.90 E-value=80 Score=25.17 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=19.8
Q ss_pred chhcchhcccCCC-C---HHHHHHHHHHHHHHH
Q 021816 156 DWRNISRNFVTSR-T---PTQVASHAQKYFIRQ 184 (307)
Q Consensus 156 ~W~~Ia~~~v~tR-T---~~Qv~sh~qky~~r~ 184 (307)
.|..|++ .+.-- + ..+++.||.+|+...
T Consensus 65 ~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 65 KWTKIAT-KMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp THHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred cHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 7999997 55332 2 357899999986654
No 117
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.59 E-value=2.2e+02 Score=19.69 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK 72 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~ 72 (307)
......|.+....|+.++...+.-+...-..||..+ |-|..+|..=|.
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFq 56 (70)
T 2da1_A 9 RPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-GLPQKVIKHWFR 56 (70)
T ss_dssp SCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-CCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-CCCHHHHHHHhh
Confidence 456789999999999999875544445667899988 789988876444
No 118
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.32 E-value=1.6e+02 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816 32 AENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA 76 (307)
Q Consensus 32 EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~ 76 (307)
+-|..+..+|...+.- .+..||+.+ |-|..-|.++.+.|.+
T Consensus 27 ~~d~~IL~~L~~~~~~---s~~eLA~~l-glS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKA---PLREISKIT-GLAESTIHERIRKLRE 67 (171)
T ss_dssp HHHHHHHHHHHHCTTC---CHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3445566677766544 399999999 7999999999999876
No 119
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.10 E-value=2.3e+02 Score=19.70 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 021816 24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKE 73 (307)
Q Consensus 24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~ 73 (307)
......|.+....|+.++...+.-+...=..||..+ |-|..+|..=|.+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 57 (70)
T 2cra_A 9 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT-SLSERQITIWFQN 57 (70)
T ss_dssp CSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhhHhhHh
Confidence 346789999999999999876544444567899988 7999998765543
Done!