BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021818
         (307 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q14F97|YCF2_POPAL Protein ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1
          Length = 2282

 Score = 32.0 bits (71), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 190  NFHRRNSYNASSANSDIKFDVCDHDQDN 217
            +FH RN+   S  N+D  F +  HDQDN
Sbjct: 973  SFHTRNNRRKSFDNTDSSFSMISHDQDN 1000


>sp|A4GYV4|YCF2_POPTR Protein ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1
          Length = 2285

 Score = 32.0 bits (71), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 190  NFHRRNSYNASSANSDIKFDVCDHDQDN 217
            +FH RN+   S  N+D  F +  HDQDN
Sbjct: 976  SFHTRNNRRKSFDNTDSSFSMISHDQDN 1003


>sp|Q54I39|IST1L_DICDI IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3
           SV=1
          Length = 369

 Score = 31.6 bits (70), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 2   LIEKLSVRTPTGEVKLKVMKEIAKEFQIDW 31
           ++ KLS  TP   +  + + EIA++F +DW
Sbjct: 148 IVHKLSYATPDPSIIFQTLSEIAEKFNVDW 177


>sp|B1NWJ3|YCF2_MANES Protein ycf2 OS=Manihot esculenta GN=ycf2 PE=3 SV=1
          Length = 2312

 Score = 31.6 bits (70), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 190 NFHRRNSYNASSANSDIKFDVCDHDQDN 217
           +FH RN+   S  N+D  F +  HDQDN
Sbjct: 967 SFHTRNNRRKSFDNTDSYFSMISHDQDN 994


>sp|Q0ZIV6|YCF2_VITVI Protein ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1
          Length = 2300

 Score = 31.2 bits (69), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 190  NFHRRNSYNASSANSDIKFDVCDHDQDN 217
            +FH RN+   S  N+D  F +  HDQDN
Sbjct: 976  SFHSRNNRRKSFDNTDSYFSMISHDQDN 1003


>sp|Q49KT6|YCF2_EUCGG Protein ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3
           SV=1
          Length = 2280

 Score = 31.2 bits (69), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 190 NFHRRNSYNASSANSDIKFDVCDHDQDN 217
           +FH RN+   S  N+D  F +  HDQDN
Sbjct: 971 SFHTRNNRRKSFDNTDSYFSMISHDQDN 998


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.126    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,052,127
Number of Sequences: 539616
Number of extensions: 5333731
Number of successful extensions: 17459
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 17341
Number of HSP's gapped (non-prelim): 172
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)