Query 021818
Match_columns 307
No_of_seqs 94 out of 96
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jyw_M 60S ribosomal protein L 76.5 2.1 7.3E-05 37.6 3.9 25 90-114 142-166 (178)
2 3cay_A LPD-12; alpha helix, ac 46.0 22 0.00076 22.5 3.3 19 98-116 4-22 (27)
3 3eab_G CHMP1B; spastin, MIT, E 43.0 8.2 0.00028 27.4 1.1 12 293-304 38-49 (50)
4 3s0r_A De novo designed helica 39.5 44 0.0015 21.6 4.0 24 93-116 5-28 (30)
5 3ggz_E Vacuolar protein-sortin 26.0 30 0.001 22.6 1.5 14 292-305 16-29 (29)
6 3jyw_M 60S ribosomal protein L 24.4 78 0.0027 27.7 4.4 17 90-106 145-161 (178)
7 2rr3_B OSBP, oxysterol-binding 22.0 1.1E+02 0.0037 21.8 3.9 37 243-286 9-45 (47)
8 3jyw_F 60S ribosomal protein L 21.3 80 0.0027 27.8 3.9 14 216-229 101-114 (213)
9 2v6x_B DOA4-independent degrad 19.9 46 0.0016 24.0 1.6 18 289-306 36-53 (54)
10 1wfb_A Antifreeze protein isof 19.8 1.2E+02 0.0042 20.4 3.6 21 98-118 3-23 (38)
No 1
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=76.49 E-value=2.1 Score=37.61 Aligned_cols=25 Identities=48% Similarity=0.392 Sum_probs=16.9
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHH
Q 021818 90 QFEDTASAAEAAADSAKKAVAAAQA 114 (307)
Q Consensus 90 qykDv~sAAqAAfESAa~AAaAARA 114 (307)
+|.||.+||-||+..|+-|++||-|
T Consensus 142 k~~~~~~~~~~~~~~~~~~~~~~~~ 166 (178)
T 3jyw_M 142 KAAAAAAAAAAAAAAAAAAAAAAAA 166 (178)
T ss_dssp CCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 7999998887777666555444433
No 2
>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A*
Probab=46.00 E-value=22 Score=22.51 Aligned_cols=19 Identities=58% Similarity=0.515 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021818 98 AEAAADSAKKAVAAAQAAA 116 (307)
Q Consensus 98 AqAAfESAa~AAaAARAAa 116 (307)
|+||-..|.||+.||.-|+
T Consensus 4 aeaaekaakyaaeaaekaa 22 (27)
T 3cay_A 4 AEAAEKAAKYAAEAAEKAA 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556667776665554
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=42.97 E-value=8.2 Score=27.37 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=6.8
Q ss_pred hHHHHHHHHHhh
Q 021818 293 YEDLAARFEALK 304 (307)
Q Consensus 293 yDdLaARF~ALK 304 (307)
-|+|+.|++|||
T Consensus 38 eD~L~~RLaaLR 49 (50)
T 3eab_G 38 QDELSQRLARLR 49 (50)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
No 4
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=39.45 E-value=44 Score=21.60 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 021818 93 DTASAAEAAADSAKKAVAAAQAAA 116 (307)
Q Consensus 93 Dv~sAAqAAfESAa~AAaAARAAa 116 (307)
.+.+-||-|.|-|.-|-.|||-|.
T Consensus 5 saleyaqqalekaqlalqaarqal 28 (30)
T 3s0r_A 5 SALEYAQQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778889999999988888875
No 5
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=25.98 E-value=30 Score=22.56 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHhhc
Q 021818 292 DYEDLAARFEALKY 305 (307)
Q Consensus 292 DyDdLaARF~ALK~ 305 (307)
.-|-||-|+-|||+
T Consensus 16 kEDkLAqRLRALR~ 29 (29)
T 3ggz_E 16 KEDKLAQRLRALRG 29 (29)
T ss_pred hhHHHHHHHHHHcC
Confidence 46889999999985
No 6
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.42 E-value=78 Score=27.66 Aligned_cols=17 Identities=41% Similarity=0.317 Sum_probs=7.5
Q ss_pred chhcHHHHHHHHHHHHH
Q 021818 90 QFEDTASAAEAAADSAK 106 (307)
Q Consensus 90 qykDv~sAAqAAfESAa 106 (307)
.-..++.||-||+..|+
T Consensus 145 ~~~~~~~~~~~~~~~~~ 161 (178)
T 3jyw_M 145 AAAAAAAAAAAAAAAAA 161 (178)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 7
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=22.01 E-value=1.1e+02 Score=21.81 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=21.3
Q ss_pred ccCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 021818 243 QWDESDYDEEIEVEAPSGCTSLPPERTPPPIPPSLGKQGSFHRV 286 (307)
Q Consensus 243 k~d~sd~dee~e~~~p~~~~~~Pper~~~~~~~~~~~~~~~~hV 286 (307)
|=+.||+||++|--..+.-|++| ..++..|..+..|-
T Consensus 9 KGe~SdEDed~EfFDA~efITv~-------~~~k~~r~~~~~~~ 45 (47)
T 2rr3_B 9 KGDMSDEDDENEFFDAPEIITMP-------ENLGHKRTGSHHHH 45 (47)
T ss_dssp CCCSCCCCCSSCCBCCCSSCSSC-------SCCCSCCSSSCCC-
T ss_pred cccccccccccccccccceeEcc-------CCcccccccccccc
Confidence 77889989988844334345666 23344555554443
No 8
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=21.25 E-value=80 Score=27.84 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=8.2
Q ss_pred CCCCCCCCCCcccc
Q 021818 216 DNKMEGPPGGKVLR 229 (307)
Q Consensus 216 ~~~~~~~~~~~~~r 229 (307)
+-+.||-|.-+.-|
T Consensus 101 pyV~~G~p~l~tv~ 114 (213)
T 3jyw_F 101 PYVAYGYPSYSTIR 114 (213)
T ss_dssp TTSCEECCCSSTTT
T ss_pred chheeecCCHHHHH
Confidence 44567766666543
No 9
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=19.88 E-value=46 Score=24.00 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHHHhhcC
Q 021818 289 KLPDYEDLAARFEALKYR 306 (307)
Q Consensus 289 KLPDyDdLaARF~ALK~~ 306 (307)
..++-|||=||+..||+.
T Consensus 36 ~~~~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 36 HGNPDDDLQARLNTLKKQ 53 (54)
T ss_dssp ---CCHHHHHHHHHHHCC
T ss_pred CCCchHHHHHHHHHhccC
Confidence 345789999999999963
No 10
>1wfb_A Antifreeze protein isoform HPLC6; ICE binding protein, thermal hysteresis protein, antifreeze polypeptide; 1.50A {Pseudopleuronectes americanus} SCOP: j.21.1.1 PDB: 1wfa_A
Probab=19.84 E-value=1.2e+02 Score=20.41 Aligned_cols=21 Identities=48% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021818 98 AEAAADSAKKAVAAAQAAAYL 118 (307)
Q Consensus 98 AqAAfESAa~AAaAARAAaEL 118 (307)
|--|+..|+--++-|+||+||
T Consensus 3 asdaaaaaaltaanakaaael 23 (38)
T 1wfb_A 3 ASDAAAAAALTAANAKAAAEL 23 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHHHHHH
Done!