BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021819
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 167/277 (60%), Gaps = 12/277 (4%)
Query: 8 EEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSS---HLFALPGAGDANLRVF 64
+ ETVCVTGA+GFIG+WLV LL+ YT + ATV ++ HL LP A + +L ++
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPTNVKKVKHLLDLPKA-ETHLTLW 61
Query: 65 EADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEA-AKRFGV 123
+AD+ D G+ A++GC GVFHVA+P E DPE E+I P ++G L ++++ A V
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESK-DPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 124 RRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRK--KW-YPVSKTLAEKAAWEFAE 180
RR+V TSS + V + V+DE+ W+D+E+C+++K W Y VSKTLAE+AAW++A+
Sbjct: 121 RRLVFTSS-AGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK 179
Query: 181 KHGVDVVAIHPATCLGPLMQPYLNASCAVLQQLLQGSKDTQEYHWLGA-VPVKDVAKAQV 239
++ +D + I P +GP + + S + G++ G V + D+ A +
Sbjct: 180 ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHI 239
Query: 240 LLFESPAASGRYLCTNGIYQFGDFAERVSKLFPEFPV 276
LFE+P A GRY+C++ D A+ + + +PE+ +
Sbjct: 240 YLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNI 276
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 1 MASEAEKEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDS---SHLFALPGAG 57
MA++ ++T CV G GF+ + LVK LL Y ++N TV + SHL L G
Sbjct: 1 MATQHPIGKKTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDPDNQKKVSHLLELQELG 59
Query: 58 DANLRVFEADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEA 117
D L++F AD+ D + + GC VFHVA+P DPE ++I PA+QG +NV++A
Sbjct: 60 D--LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASE-DPENDMIKPAIQGVVNVMKA 116
Query: 118 AKRF-GVRRVVVTSSISAIVPNP-GWKGKVFDETSWTDLEYCKSRK--KW-YPVSKTLAE 172
R V+RV++TSS +A+ N G V DE +WTD+E+ S K W YP SKTLAE
Sbjct: 117 CTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAE 176
Query: 173 KAAWEFAEKHGVDVVAIHPATCLGPLMQPYLNASCAVLQQLLQGSK----DTQEYHWL-G 227
KAAW+FAE++ +D++ + P G + + +S + L+ G++ + L G
Sbjct: 177 KAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSG 236
Query: 228 AVP---VKDVAKAQVLLFESPAASGRYLCTNGIYQFGDFAERVSKLFPEFPV 276
+V V+DV +A + + E +ASGRY+C + A+ +SK +P++ V
Sbjct: 237 SVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKV 288
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 148/272 (54%), Gaps = 10/272 (3%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNY---TSINATVFPGSDSSHLFALPGAGDANLRVFEADV 68
VCVTG GF+G+W++K+LL+N Y T+I A D S L LPGA + L F AD+
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASE-KLHFFNADL 62
Query: 69 LDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEA-AKRFGVRRVV 127
+ + + A+EGC G+FH ASP +PE+ + V G L +L+A V+R +
Sbjct: 63 SNPDSFAAAIEGCVGIFHTASPIDFA-VSEPEEIVTKRTVDGALGILKACVNSKTVKRFI 121
Query: 128 VTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW---YPVSKTLAEKAAWEFAEKHGV 184
TSS SA+ N G V DE+ W+D++ +S K + Y VSKTLAEKA EF E++G+
Sbjct: 122 YTSSGSAVSFN-GKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGI 180
Query: 185 DVVAIHPATCLGPLMQPYLNASCAVLQQLLQGSKDTQEYHWLGAVPVKDVAKAQVLLFES 244
DVV + +G + P L S L+ G K+ V V DVA+A + L E+
Sbjct: 181 DVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLEN 240
Query: 245 PAASGRYLCTNGIYQFGDFAERVSKLFPEFPV 276
GRY C+ I + ++ +S +PE+ +
Sbjct: 241 SVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQI 272
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 107/212 (50%), Gaps = 24/212 (11%)
Query: 8 EEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGA---GDANLRVF 64
E V VTGANGF+ + +V+ LL++ Y + T S ++L A G V
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 65 EADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF-GV 123
E D+L GA ++G GV H+AS + + D E++ PA+ GTLN L AA V
Sbjct: 69 E-DMLKQGAYDEVIKGAAGVAHIASVVSFSNKYD---EVVTPAIGGTLNALRAAAATPSV 124
Query: 124 RRVVVTSS-ISAIVPNPGWKGKVFDETSWTDLEYCKSRKK----------W-YPVSKTLA 171
+R V+TSS +SA++P P +G DE SW +LE K W Y SKT A
Sbjct: 125 KRFVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEA 183
Query: 172 EKAAWEFAEKHG--VDVVAIHPATCLGPLMQP 201
E AAW+F +++ + A+ P +G + P
Sbjct: 184 ELAAWKFMDENKPHFTLNAVLPNYTIGTIFDP 215
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 105/212 (49%), Gaps = 24/212 (11%)
Query: 8 EEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGA---GDANLRVF 64
E V VTGANGF+ + +V+ LL++ Y + T S ++L A G V
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 65 EADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF-GV 123
E D L GA ++G GV H+AS + + D E++ PA+ GTLN L AA V
Sbjct: 69 E-DXLKQGAYDEVIKGAAGVAHIASVVSFSNKYD---EVVTPAIGGTLNALRAAAATPSV 124
Query: 124 RRVVVTSS-ISAIVPNPGWKGKVFDETSWTDLEYCKSRKK----------W-YPVSKTLA 171
+R V+TSS +SA++P P +G DE SW +LE K W Y SKT A
Sbjct: 125 KRFVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEA 183
Query: 172 EKAAWEFAE--KHGVDVVAIHPATCLGPLMQP 201
E AAW+F + K + A+ P +G + P
Sbjct: 184 ELAAWKFXDENKPHFTLNAVLPNYTIGTIFDP 215
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 14/195 (7%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDS-----SHLFALPGAGDANLRVFEA 66
+ VTG GFIG+ V+ LL Y + A DS + P D LR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 67 DVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRV 126
D+ D+G ++R + G + H A+ ++ + VQGT +L+ A GV RV
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRV 122
Query: 127 VVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHGVDV 186
V S+ D SWT+ + Y SK ++ A + +G+DV
Sbjct: 123 VHVSTDEVY--------GSIDSGSWTESSPLEPNSP-YAASKAGSDLVARAYHRTYGLDV 173
Query: 187 VAIHPATCLGPLMQP 201
GP P
Sbjct: 174 RITRCCNNYGPYQHP 188
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 14/195 (7%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDS-----SHLFALPGAGDANLRVFEA 66
+ VTG GFIG+ V+ LL Y + A DS + P D LR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 67 DVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRV 126
D+ D+G ++R + G + H A+ ++ + VQGT +L+ A GV RV
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRV 122
Query: 127 VVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHGVDV 186
V S+ D SWT+ + Y SK ++ A + +G+DV
Sbjct: 123 VHVSTNQVY--------GSIDSGSWTESSPLEPNSP-YAASKAGSDLVARAYHRTYGLDV 173
Query: 187 VAIHPATCLGPLMQP 201
GP P
Sbjct: 174 RITRCCNNYGPYQHP 188
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 116/280 (41%), Gaps = 35/280 (12%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
+ VTG++G IGT LV L + Y N +S + G ++ DV +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEK-YGKKNVI------ASDIVQRDTGG---IKFITLDVSNR 51
Query: 72 GAVSRAVE--GCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
+ RAVE +FH+A + + DP + + GT N+LEAAK+ V +VV+
Sbjct: 52 DEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKV-NMNGTYNILEAAKQHRVEKVVIP 110
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHGVDVVAI 189
S+I P K KV T + Y V+K AE + EK G+DV ++
Sbjct: 111 STIGVFGPETP-KNKVPSIT-------ITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSL 162
Query: 190 HPATCLGPLMQPYLNASCAVLQQLLQGSKDTQEYHWLG---AVPVK---DVAKAQVLLFE 243
+ +P + ++ K + +L A+P+ D KA V L+E
Sbjct: 163 RYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYE 222
Query: 244 SPAASGRYLCTNGI----YQF--GDFAERVSKLFPEFPVH 277
A + + NG Y F + ++ + PEF +
Sbjct: 223 --ADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIE 260
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 117/278 (42%), Gaps = 34/278 (12%)
Query: 6 EKEEETVCVTGANGFIGTWLV-KTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVF 64
EK+ + + +TG GF+G+ L K ++D + ++ F G + + G N +
Sbjct: 2 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI---GHENFELI 58
Query: 65 EADVLDSGAVSRAVEGCKGVFHVASPCTLEDPV-DPEKELILPAVQGTLNVLEAAKRFGV 123
DV++ + ++H+ASP + + + +P K L + GTLN+L AKR G
Sbjct: 59 NHDVVEPLYIE-----VDQIYHLASPASPPNYMYNPIKTLKTNTI-GTLNMLGLAKRVGA 112
Query: 124 RRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHG 183
R ++ +S S + +P + E W + R Y K +AE + + ++ G
Sbjct: 113 R--LLLASTSEVYGDPEVHPQ--SEDYWGHVNPIGPR-ACYDEGKRVAETMCYAYMKQEG 167
Query: 184 VDVVAIHPATCLGPLMQPYLNASCAV---LQQLLQGS--------KDTQEYHWLGAVPVK 232
V+V GP M ++N V + Q LQG T+ + + V
Sbjct: 168 VEVRVARIFNTFGPRM--HMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQY-----VS 220
Query: 233 DVAKAQVLLFESPAASGRYLCTNGIYQFGDFAERVSKL 270
D+ V L S +S L + +FA+ + L
Sbjct: 221 DLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNL 258
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 116/280 (41%), Gaps = 35/280 (12%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
+ VTG++G IGT LV L + Y N +S + G ++ DV +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEK-YGKKNVI------ASDIVQRDTGG---IKFITLDVSNR 51
Query: 72 GAVSRAVE--GCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
+ RAVE +FH+A + + DP + + GT N+LEAAK+ V +VV+
Sbjct: 52 DEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKV-NMNGTYNILEAAKQHRVEKVVIP 110
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHGVDVVAI 189
S+I P K KV T + + V+K AE + EK G+DV ++
Sbjct: 111 STIGVFGPETP-KNKVPSIT-------ITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSL 162
Query: 190 HPATCLGPLMQPYLNASCAVLQQLLQGSKDTQEYHWLG---AVPVK---DVAKAQVLLFE 243
+ +P + ++ K + +L A+P+ D KA V L+E
Sbjct: 163 RYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYE 222
Query: 244 SPAASGRYLCTNGI----YQF--GDFAERVSKLFPEFPVH 277
A + + NG Y F + ++ + PEF +
Sbjct: 223 --ADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIE 260
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 13 CVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDSG 72
+TG GF+G +L N+ T N VF G+ ++ LP N+ + D++DS
Sbjct: 16 LITGVAGFVGKYLA-----NHLTEQNVEVF-GTSRNNEAKLP-----NVEMISLDIMDSQ 64
Query: 73 AVSRAVEGCKG--VFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVTS 130
V + + K +FH+A+ +++D +K V GTL+VL+A + + ++T
Sbjct: 65 RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT- 123
Query: 131 SISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHGVDVVAIH 190
+ + G + E S E Y VSK A ++ + +G+D++
Sbjct: 124 -----IGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTR 178
Query: 191 PATCLGP 197
+GP
Sbjct: 179 TFNHIGP 185
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 26/178 (14%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSI------NATVFPGSDSSHLFALPGAGDANLRV 63
E V VTG G+IG+ V LL+ Y + NA GS L + ++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 64 FEADVLDSGAVSRAVE--GCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF 121
E D+LD GA+ R + V H A + + V + + GT+ +LE K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 122 GVRRVVVTSSISAI----------------VPNPGWKGKVFDETSWTDLEYCKSRKKW 163
GV+ +V +SS + NP K K F E DL C++ K W
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDL--CQADKTW 178
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSI------NATVFPGSDSSHLFALPGAGDANLRV 63
E V VTG G+IG+ V LL+ Y + NA GS L + ++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 64 FEADVLDSGAVSRAVE--GCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF 121
E D+LD GA+ R + V H A + + V + + GT+ +LE K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 122 GVRRVVVTSSISAI----------------VPNPGWKGKVFDETSWTDLEYCKSRKKWYP 165
GV+ +V +SS + NP K K F E DL C++ K W
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDL--CQADKTWNA 180
Query: 166 V 166
V
Sbjct: 181 V 181
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 26/178 (14%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSI------NATVFPGSDSSHLFALPGAGDANLRV 63
E V VTG G+IG+ V LL+ Y + NA GS L + ++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 64 FEADVLDSGAVSRAVE--GCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF 121
E D+LD GA+ R + V H A + + V + + GT+ +LE K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 122 GVRRVVVTSSISAI----------------VPNPGWKGKVFDETSWTDLEYCKSRKKW 163
GV+ +V +SS + NP K K F E DL C++ K W
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDL--CQADKTW 178
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 55 GAGDANLRVFEADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNV 114
GA +A+ + D+ D+ AV V+ C G+ H+ ++E P + +++ + G N+
Sbjct: 38 GAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGG-VSVERPWN---DILQANIIGAYNL 93
Query: 115 LEAAKRFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKA 174
EAA+ G R+V SS I P T+ D E + Y +SK E
Sbjct: 94 YEAARNLGKPRIVFASSNHTIGYYP--------RTTRIDTEVPRRPDSLYGLSKCFGEDL 145
Query: 175 AWEFAEKHGVDVVAIHPATCL 195
A + K ++ + I +C
Sbjct: 146 ASLYYHKFDIETLNIRIGSCF 166
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 16/194 (8%)
Query: 6 EKEEETVCVTGANGFIGTWLVKTL-LDNNYTSINATVFPGSDSSHLFALPGAGDANLRVF 64
EK+ + + +TG GF+G+ L L D + ++ F G + + G N +
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWI---GHENFELI 80
Query: 65 EADVLDSGAVSRAVEGCKGVFHVASPCTLED-PVDPEKELILPAVQGTLNVLEAAKRFGV 123
DV++ + ++H+ASP + + +P K L + GTLN L AKR G
Sbjct: 81 NHDVVEPLYIE-----VDQIYHLASPASPPNYXYNPIKTLKTNTI-GTLNXLGLAKRVGA 134
Query: 124 RRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHG 183
R ++ +S S + +P + E W + R Y K +AE + + ++ G
Sbjct: 135 R--LLLASTSEVYGDPEVHPQ--SEDYWGHVNPIGPR-ACYDEGKRVAETXCYAYXKQEG 189
Query: 184 VDVVAIHPATCLGP 197
V+V GP
Sbjct: 190 VEVRVARIFNTFGP 203
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 17/216 (7%)
Query: 7 KEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEA 66
+ V + G NGFIG L + LL ++ + GSD+ F + E
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI-GSDAISRFL----NHPHFHFVEG 65
Query: 67 DV-LDSGAVSRAVEGCKGVFHVASPCT-LEDPVDPEKELILPAVQGTLNVLEAAKRFGVR 124
D+ + S + V+ C V + + T +E +P + L + L ++ ++ R
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL-DFEENLRIIRYCVKY--R 122
Query: 125 RVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW-YPVSKTLAEKAAWEFAEKHG 183
+ ++ S S + K FDE + ++ +W Y VSK L ++ W + EK G
Sbjct: 123 KRIIFPSTSEVYGM--CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 184 VDVVAIHPATCLGP----LMQPYLNASCAVLQQLLQ 215
+ P +GP L + +S A+ Q +L
Sbjct: 181 LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 17/216 (7%)
Query: 7 KEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEA 66
+ V + G NGFIG L + LL ++ + GSD+ F + E
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI-GSDAISRFL----NHPHFHFVEG 65
Query: 67 DV-LDSGAVSRAVEGCKGVFHVASPCT-LEDPVDPEKELILPAVQGTLNVLEAAKRFGVR 124
D+ + S + V+ C V + + T +E +P + L + L ++ ++ R
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL-DFEENLRIIRYCVKY--R 122
Query: 125 RVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW-YPVSKTLAEKAAWEFAEKHG 183
+ ++ S S + K FDE + ++ +W Y VSK L ++ W + EK G
Sbjct: 123 KRIIFPSTSEVYGM--CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 184 VDVVAIHPATCLGP----LMQPYLNASCAVLQQLLQ 215
+ P +GP L + +S A+ Q +L
Sbjct: 181 LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 17/216 (7%)
Query: 7 KEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEA 66
+ V + G NGFIG L + LL ++ + GSD+ F + E
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI-GSDAISRFL----NHPHFHFVEG 65
Query: 67 DV-LDSGAVSRAVEGCKGVFHVASPCT-LEDPVDPEKELILPAVQGTLNVLEAAKRFGVR 124
D+ + S + V+ C V + + T +E +P + L + L ++ ++ R
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL-DFEENLRIIRYCVKY--R 122
Query: 125 RVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW-YPVSKTLAEKAAWEFAEKHG 183
+ ++ S S + K FDE + ++ +W Y VSK L ++ W + EK G
Sbjct: 123 KRIIFPSTSEVYGM--CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 184 VDVVAIHPATCLGP----LMQPYLNASCAVLQQLLQ 215
+ P +GP L + +S A+ Q +L
Sbjct: 181 LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 17/216 (7%)
Query: 7 KEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEA 66
+ V + G NGFIG L + LL ++ + GSD+ F + E
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI-GSDAISRFL----NHPHFHFVEG 65
Query: 67 DV-LDSGAVSRAVEGCKGVFHVASPCT-LEDPVDPEKELILPAVQGTLNVLEAAKRFGVR 124
D+ + S + V+ C V + + T +E +P + L + L ++ ++ R
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL-DFEENLRIIRYCVKY--R 122
Query: 125 RVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW-YPVSKTLAEKAAWEFAEKHG 183
+ ++ S S + K FDE + ++ +W Y VSK L ++ W + EK G
Sbjct: 123 KRIIFPSTSEVYGM--CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 184 VDVVAIHPATCLGP----LMQPYLNASCAVLQQLLQ 215
+ P +GP L + +S A+ Q +L
Sbjct: 181 LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 17/211 (8%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADV-LD 70
V + G NGFIG L + LL ++ + GSD+ F + E D+ +
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDI-GSDAISRFL----NHPHFHFVEGDISIH 57
Query: 71 SGAVSRAVEGCKGVFHVASPCT-LEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
S + V+ C V + + T +E +P + L + L ++ ++ R+ ++
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL-DFEENLRIIRYCVKY--RKRIIF 114
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW-YPVSKTLAEKAAWEFAEKHGVDVVA 188
S S + K FDE + ++ +W Y VSK L ++ W + EK G+
Sbjct: 115 PSTSEVYGM--CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 189 IHPATCLGP----LMQPYLNASCAVLQQLLQ 215
P +GP L + +S A+ Q +L
Sbjct: 173 FRPFNWMGPRLDNLNAARIGSSRAITQLILN 203
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 17/216 (7%)
Query: 7 KEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEA 66
+ V + G NGFIG L + LL ++ + GSD+ F + E
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI-GSDAISRFL----NHPHFHFVEG 367
Query: 67 DV-LDSGAVSRAVEGCKGVFHVASPCT-LEDPVDPEKELILPAVQGTLNVLEAAKRFGVR 124
D+ + S + V+ C V + + T +E +P + L + L ++ ++ R
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELD-FEENLRIIRYCVKY--R 424
Query: 125 RVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW-YPVSKTLAEKAAWEFAEKHG 183
+ ++ S S + K FDE + ++ +W Y VSK L ++ W + EK G
Sbjct: 425 KRIIFPSTSEVYGM--CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 482
Query: 184 VDVVAIHPATCLGP----LMQPYLNASCAVLQQLLQ 215
+ P +GP L + +S A+ Q +L
Sbjct: 483 LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 518
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 17/216 (7%)
Query: 7 KEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEA 66
+ V + G NGFIG L + LL ++ + GSD+ F + E
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI-GSDAISRFL----NHPHFHFVEG 65
Query: 67 DV-LDSGAVSRAVEGCKGVFHVASPCT-LEDPVDPEKELILPAVQGTLNVLEAAKRFGVR 124
D+ + S + V+ C V + + T +E +P + L + L ++ ++ R
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL-DFEENLRIIRYCVKY--R 122
Query: 125 RVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKW-YPVSKTLAEKAAWEFAEKHG 183
+ ++ S + + K FDE + ++ +W Y VSK L ++ W + EK G
Sbjct: 123 KRIIFPSTAEVYGM--CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 184 VDVVAIHPATCLGP----LMQPYLNASCAVLQQLLQ 215
+ P +GP L + +S A+ Q +L
Sbjct: 181 LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 60 NLRVFEADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAK 119
N + D+ D+ AV+ V GC G+ H+ ++E P + +++ + G N+ EAA+
Sbjct: 44 NEECVQCDLADANAVNAMVAGCDGIVHLGG-ISVEKPFE---QILQGNIIGLYNLYEAAR 99
Query: 120 RFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFA 179
G R+V SS I + +T + Y VSK E A +
Sbjct: 100 AHGQPRIVFASSNHTI--------GYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYF 151
Query: 180 EKHGVDVVAIHPATC 194
+K G + + +C
Sbjct: 152 DKFGQETALVRIGSC 166
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFE-ADVLD 70
+ +TG GFIG+ +V+ ++ N ++ + + + +L +L ++N FE AD+ D
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTV-VNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 71 SGAVSRAVEGCK--GVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF 121
S ++R E + V H+A+ ++ + I + GT +LE A+++
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY 114
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
+ VTG GFIG+ +V L ++N + + G++ F A R+ +AD L +
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEE---FVNEAA-----RLVKAD-LAA 54
Query: 72 GAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVTSS 131
+ ++G + V+H+A+ + + E+ V T +LEA ++ GV R+V TS+
Sbjct: 55 DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114
Query: 132 ISA-----IVPNP 139
+ ++P P
Sbjct: 115 STVYGEAKVIPTP 127
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 12 VCVTGANGFIGTWLVK--------TLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRV 63
+ +TG G +G+ L++ L+ +N+ + V P P AG L V
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP----------PVAG---LSV 69
Query: 64 FEADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGV 123
E V D+G + RA + K V S +DP D E VQG++NV +AA + GV
Sbjct: 70 IEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDP-DDWAEDAATNVQGSINVAKAASKAGV 128
Query: 124 RRVV 127
+R++
Sbjct: 129 KRLL 132
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
+ VTG GFIG+ LV L++ Y + + G A L V +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDT---------GGSAELHVRDLKDYSW 53
Query: 72 GAVSRAVEGCKG--VFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRR 125
GA G KG VFH A+ + +P+ E ++ T NVLE A++ GVR
Sbjct: 54 GA------GIKGDVVFHFAANPEVRLSTTEPIVHFNENVV----ATFNVLEWARQTGVRT 103
Query: 126 VVVTSSISA-----IVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWE--- 177
VV SS + ++P P + + P+S A KAA E
Sbjct: 104 VVFASSSTVYGDADVIPTP-------------------EEEPYKPISVYGAAKAAGEVMC 144
Query: 178 --FAEKHGVDVVAIHPATCLGPLMQ 200
+A GV +A+ A +GP ++
Sbjct: 145 ATYARLFGVRCLAVRYANVVGPRLR 169
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 84/205 (40%), Gaps = 50/205 (24%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
+ VTG GFIG+ LV L++ Y + V S F P A L V +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVV--VVDNLSSGRREFVNP---SAELHVRDLKDYSW 57
Query: 72 GAVSRAVEGCKG--VFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRR 125
GA G KG VFH A+ + +P+ E ++ T NVLE A++ GVR
Sbjct: 58 GA------GIKGDVVFHFAANPEVRLSTTEPIVHFNENVV----ATFNVLEWARQTGVRT 107
Query: 126 VVVTSSISA-----IVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWE--- 177
VV SS + ++P P + + P+S A KAA E
Sbjct: 108 VVFASSSTVYGDADVIPTP-------------------EEEPYKPISVYGAAKAAGEVMC 148
Query: 178 --FAEKHGVDVVAIHPATCLGPLMQ 200
+A GV +A+ A +GP ++
Sbjct: 149 ATYARLFGVRCLAVRYANVVGPRLR 173
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 97/258 (37%), Gaps = 44/258 (17%)
Query: 4 EAEKEEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRV 63
++E + V VTG G+IG+ V L++N Y + A S + L ++
Sbjct: 6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPF 65
Query: 64 FEADVLDSGAVSRAVEGCK--GVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF 121
+E D+ D + + + K V H A + + + GT+ +LE +++
Sbjct: 66 YEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY 125
Query: 122 GVRRVVVTSSISA---------IVP----------NPGWKGKVFDETSWTDLEYCKSRKK 162
V + V +SS + ++P NP K E DL
Sbjct: 126 NVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYN------ 179
Query: 163 WYPVSKTLAEKAAWEFAEKHGVDVVAIHPATCLG--PLMQPYLNASCAVLQQLLQGSKDT 220
++K +W+FA + + HP+ +G PL P N + Q+ G ++
Sbjct: 180 --------SDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIP--NNLLPYMAQVAVGRREK 229
Query: 221 -----QEYHWLGAVPVKD 233
+Y P++D
Sbjct: 230 LYIFGDDYDSRDGTPIRD 247
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSINATVFP----GSDSSHLFALPGAGDANLRVFE 65
+ + VTG GFIG+ V + NN+ ++ TV + ++L A+ G + +
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVY-NNHPDVHVTVLDKLTYAGNKANLEAILGD---RVELVV 60
Query: 66 ADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVR- 124
D+ D+ V + + H A+ ++ ++ I GT +LEAA+++ +R
Sbjct: 61 GDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF 120
Query: 125 RVVVTSSISAIVP 137
V T + +P
Sbjct: 121 HHVSTDEVYGDLP 133
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 60 NLRVFEADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAK 119
N + D+ D+ AV+ V GC G+ H+ ++E P + +++ + G N+ EAA+
Sbjct: 44 NEECVQCDLADANAVNAMVAGCDGIVHLGG-ISVEKPFE---QILQGNIIGLYNLYEAAR 99
Query: 120 RFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFA 179
G R+V SS I + +T + VSK E A +
Sbjct: 100 AHGQPRIVFASSNHTI--------GYYPQTERLGPDVPARPDGLAGVSKCFGENLARMYF 151
Query: 180 EKHGVDVVAIHPATC 194
+K G + + +C
Sbjct: 152 DKFGQETALVRIGSC 166
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
SS + NP T Y KS+ + L + + W A + V
Sbjct: 123 SSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
SS + NP T Y KS+ + L + + W A + V
Sbjct: 123 SSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 91/233 (39%), Gaps = 25/233 (10%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVL 69
+ V +TG G IG+ + + LL+ + F HL P NL E +
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHP-----NLTFVEGSIA 76
Query: 70 DSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
D V++ + + V + + +DP D + + V G+ NV++AAK+ V R V
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGS-NVVQAAKKNNVGRFVYF 135
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHGVDVVAI 189
+ P + D Y +SK+ E ++ E G+D V
Sbjct: 136 QTALCYGVKPIQQPVRLDHPR-------NPANSSYAISKSANE----DYLEYSGLDFVTF 184
Query: 190 HPATCLGPLMQPYLNASCAV---LQQLLQGSKDTQEYHWLGAVPVKDVAKAQV 239
A +GP N S + Q+L +G K V VKD+A+A V
Sbjct: 185 RLANVVGP-----RNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATV 232
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 12 VCVTGANGFIGTWLVKTLLDN--NYTSINATVFP-GSDSSHLFALPGAGDANLRVFEADV 68
+ VTG GFIG+ ++ +L+ ++ IN GS+ ++L L D + DV
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDL--EDDPRYTFVKGDV 63
Query: 69 LDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKR 120
D V V GV H+A+ ++ + + + V GT +LE+ +R
Sbjct: 64 ADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRR 115
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
S+ + NP T Y KS+ + L + + W A + V
Sbjct: 123 STATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
S+ + NP T Y KS+ + L + + W A + V
Sbjct: 123 SAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 8 EEETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEAD 67
+ +T+ +TG G G V+ +LD + V+ + D +R F D
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGD 78
Query: 68 VLDSGAVSRAVEGCKGVFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGV 123
V D ++ A+EG H A+ P +P+ E I + G NV+ A + +
Sbjct: 79 VRDLERLNYALEGVDICIHAAALKHVPIAEYNPL----ECIKTNIMGASNVINACLKNAI 134
Query: 124 RRVVVTSSISAIVP 137
+V+ S+ A P
Sbjct: 135 SQVIALSTDKAANP 148
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
S + NP T Y KS+ + L + + W A + V
Sbjct: 123 SVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
SS + P T Y KS+ + L + + W A + V
Sbjct: 123 SSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 23/199 (11%)
Query: 14 VTGANGFIGTWLVKTLLDNNYTSI---NATVFPGSDSSHLFALPGAGDANLRVFEADVLD 70
+TG GF+G+ L L I N + +D+ H + G N D+ +
Sbjct: 6 ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLG----NFEFVHGDIRN 61
Query: 71 SGAVSRAV-----EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRR 125
V+R + + C FH+A + +D V GTLN+LEA +++
Sbjct: 62 KNDVTRLITKYMPDSC---FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNC 118
Query: 126 VVVTSSISAIVPNPGWKGKVFDETSWTDLE----YCKSRK----KWYPVSKTLAEKAAWE 177
++ SS + + + ET +T ++ Y +S + Y SK A++ +
Sbjct: 119 NIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 178
Query: 178 FAEKHGVDVVAIHPATCLG 196
+A G++ V ++ G
Sbjct: 179 YARIFGLNTVVFRHSSMYG 197
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 21/196 (10%)
Query: 14 VTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGD----ANLRVFEADVL 69
+TG GFIG+ L++TLL + + F +L + +N + + D+
Sbjct: 32 ITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIR 91
Query: 70 DSGAVSRAVEGCKGVFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRR 125
+ + A G V H A+ P ++ DP+ + G LN+L AA+ V+
Sbjct: 92 NLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNA----TNIDGFLNMLIAARDAKVQS 147
Query: 126 VVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHGVD 185
+S S +PG KV D Y V+K + E A F+ +G
Sbjct: 148 FTYAASSSTYGDHPGLP-KVEDTIG--------KPLSPYAVTKYVNELYADVFSRCYGFS 198
Query: 186 VVAIHPATCLGPLMQP 201
+ + G P
Sbjct: 199 TIGLRYFNVFGRRQDP 214
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 20/194 (10%)
Query: 11 TVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLD 70
V V G GF+G+ LVK LL+ ++ V S+ +P +R E + D
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLELGVNQVH--VVDNLLSAEKINVP--DHPAVRFSETSITD 89
Query: 71 SGAVSRAVEGCKGVFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRV 126
++ + VFH+A+ ++ DP+ + L TL + E K F +
Sbjct: 90 DALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLT----TLKLYERLKHFKRLKK 145
Query: 127 VVTSSISAIVPNPGWKGKVFDE---TSWTDLEYCKSRKKWYPVSKTLAEKAAWEFAEKHG 183
VV S+ + K FD+ T TD+ + Y +SK E + + ++H
Sbjct: 146 VVYSAAGCSIAE-----KTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ 200
Query: 184 VDVVAIHPATCLGP 197
+ V GP
Sbjct: 201 LPTVRARFQNVYGP 214
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 79/212 (37%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
S+ + NP T + KS+ + L + + W A + V
Sbjct: 123 SAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFE-ADVLD 70
+ +TG GFIG+ LV+ +++ ++ V + + +L +L + FE D+ D
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAV-VVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 71 SGAVSRAVEGCK--GVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRF 121
++R + V H+A+ ++ +D I + GT +LEAA+ +
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
S+ + P T Y KS+ + L + + W A + V
Sbjct: 123 SAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 42/221 (19%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG GFIG+ +V+ LL + V + +P + F D+ D
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARG---LEVAVLDNLATGKRENVP----KGVPFFRVDLRDK 55
Query: 72 GAVSRAVEGCK--GVFHVASPCTL----EDPV-DPEKELILPAVQGTLNVLEAAKRFGVR 124
V RA + V H A+ ++ EDPV D E L+ LN+LEA +++GV
Sbjct: 56 EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLG-----GLNLLEACRQYGVE 110
Query: 125 RVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKT--LAEKAAWE----- 177
++V S+ G ++ E E ++ + W P K+ A KAA+E
Sbjct: 111 KLVFAST----------GGAIYGEVP----EGERAEETWPPRPKSPYAASKAAFEHYLSV 156
Query: 178 FAEKHGVDVVAIHPATCLGPLMQPYLNASCAVL--QQLLQG 216
+ + +G+ V++ GP P+ A + +++L+G
Sbjct: 157 YGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKG 197
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
SS + P T + KS+ + L + + W A + V
Sbjct: 123 SSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 11 TVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLD 70
TV VTGA+G G + K L + + + + + G+A+ VF D+ D
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG----GEAD--VFIGDITD 59
Query: 71 SGAVSRAVEGCKGVFHVASPCTLEDP-VDPEK----ELILPAVQ--------GTLNVLEA 117
+ +++ A +G + + S P DP K E I Q G N ++A
Sbjct: 60 ADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDA 119
Query: 118 AKRFGVRRVVVTSSISAIVPN 138
AK GV+ +VV S+ P+
Sbjct: 120 AKVAGVKHIVVVGSMGGTNPD 140
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 3/212 (1%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V VTG +G+IG+ LL N + I S S L + G + E D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 72 GAVSRAV--EGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ + V H A + + V E V GTL ++ A + V+ + +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 130 SSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAE-KAAWEFAEKHGVDVVA 188
S+ + P T + KS+ + L + + W A + V
Sbjct: 123 SAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVG 182
Query: 189 IHPATCLGPLMQPYLNASCAVLQQLLQGSKDT 220
HP+ +G Q N + Q+ G +D+
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 24/176 (13%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
+ +TGA G +G +++++L+ S + + A G + V +AD D
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQG-----ITVRQADYGDE 56
Query: 72 GAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVTSS 131
A++ A++G + + ++S + P+ NV+ AAK GV+ + TS
Sbjct: 57 AALTSALQGVEKLLLISSSEVGQRA--PQHR----------NVINAAKAAGVKFIAYTSL 104
Query: 132 ISAIVPNPGWKGKVFD-ETSWTD--LEYCKSRKKWYPVSKTLAEKAAWEFAEKHGV 184
+ A G + + E D + Y R WY + + AA E HGV
Sbjct: 105 LHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALE----HGV 156
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
+ VTG+ G +G +V L T F L +G V + D
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRG------------FDLRPSGTGGEEVV-GSLEDG 68
Query: 72 GAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVTSS 131
A+S A+ G V H+ + + P D ++ + V+GT +L+AA GVRR V SS
Sbjct: 69 QALSDAIMGVSAVLHLGAFMSWA-PADRDR-MFAVNVEGTRRLLDAASAAGVRRFVFASS 126
>pdb|3Q2C|A Chain A, Binding Properties To Hla Class I Molecules And The
Structure Of The Leukocyte Ig-Like Receptor A3
(Lilra3ILT6LIR4CD85E)
Length = 97
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 196 GPLMQPYLNAS-CAVLQQ------LLQGSKDTQEYH---------WLGAVPVKDVAKAQV 239
GPL +P L A +V+ Q QGS +TQEYH W+ +P + V K Q
Sbjct: 1 GPLPKPTLWAEPGSVITQGSPVTLRCQGSLETQEYHLYREKKTALWITRIPQELVKKGQF 60
Query: 240 -LLFESPAASGRYLCTNGIYQFG 261
+L + +GRY C G + G
Sbjct: 61 PILSITWEHAGRYCCIYGSHTVG 83
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 12 VCVTGANGFIGTWLVKTLL-DNNYTSI--NATVFPGSDSSHLFALPGAGDANLRVFEAD- 67
V V G G+IG+ V+ LL D N++ + ++ V S H+ + ++ ++D
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRE---NVARKLQQSDG 61
Query: 68 ----------VLDSGAVSRAVEGCKGVFHVASP-------CTL----EDPVDPEKELILP 106
L+ G V R + GVF P C E DP K
Sbjct: 62 PKPPWADRYAALEVGDV-RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLK-YYDN 119
Query: 107 AVQGTLNVLEAAKRFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPV 166
V G L +L+A +++ +SS +AI NP G V D+ KS + Y
Sbjct: 120 NVVGILRLLQAMLLHKCDKIIFSSS-AAIFGNPTM-GSVSTNAEPIDINAKKSPESPYGE 177
Query: 167 SKTLAEKAAWEFAEKHGVDVVAI 189
SK +AE+ + AE +G+ + +
Sbjct: 178 SKLIAERMIRDCAEAYGIKGICL 200
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 11 TVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFAL-PGA----GDANLRVFE 65
++ + G G+IG+ VK L+D ++ V + H A+ GA GD + F
Sbjct: 3 SILICGGAGYIGSHAVKKLVD---EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFL 59
Query: 66 ADVLDSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRR 125
DV E + V H A+ + ++ + V G L +LE F V +
Sbjct: 60 RDVFTQ-------ENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDK 112
Query: 126 VVVTSS 131
+ +S+
Sbjct: 113 FIFSST 118
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVLDS 71
V V GANG + +L+ L + + + A V L GA D + E D +
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPV-AXVRNEEQGPELRER-GASDIVVANLEEDFSHA 81
Query: 72 GAVSRAVEGCKGVFHVAS-PCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVTS 130
A AV VF S P T D + IL + G + ++ A++ G++R + S
Sbjct: 82 FASIDAV-----VFAAGSGPHTGAD------KTILIDLWGAIKTIQEAEKRGIKRFIXVS 130
Query: 131 SISAIVPNPG 140
S+ + P+ G
Sbjct: 131 SVGTVDPDQG 140
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 1 MASEAEKEEETVCVTGANGFIGTWLVKTLLDNNYT----SINATVFPGSDSSHLFALPGA 56
M + + + + V VTG GF G WL L T S+ A P LF
Sbjct: 1 MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS-----LFETARV 55
Query: 57 GDANLRVFEADVLDSGAVSRAVEGCKG--VFHVASPCTLEDPVDPEKELILPAVQGTLNV 114
D ++ D+ D + ++ + VFH+A+ + E V GT+ +
Sbjct: 56 ADG-MQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYL 114
Query: 115 LEAAKRFGVRRVVVTSSISAIVPNPGW 141
LEA + G + VV + N W
Sbjct: 115 LEAIRHVGGVKAVVNITSDKCYDNKEW 141
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 27/203 (13%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGD-------ANLR 62
+T +TG GFIG+ L++ LL N I F + H + L +
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS---TGHQYNLDEVKTLVSTEQWSRFC 82
Query: 63 VFEADVLDSGAVSRAVEGCKGVFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAA 118
E D+ D + ++G V H A+ P ++ DP+ + G LN+L AA
Sbjct: 83 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNA----TNITGFLNILHAA 138
Query: 119 KRFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEF 178
K V+ +S S +P KV E + Y V+K + E A +
Sbjct: 139 KNAQVQSFTYAASSSTYGDHPALP-KV--------EENIGNPLSPYAVTKYVNEIYAQVY 189
Query: 179 AEKHGVDVVAIHPATCLGPLMQP 201
A +G + + G P
Sbjct: 190 ARTYGFKTIGLRYFNVFGRRQDP 212
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 27/203 (13%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGD-------ANLR 62
+T +TG GFIG+ L++ LL N I F + H + L +
Sbjct: 20 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS---TGHQYNLDEVKTLVSTEQWSRFC 76
Query: 63 VFEADVLDSGAVSRAVEGCKGVFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAA 118
E D+ D + ++G V H A+ P ++ DP+ + G LN+L AA
Sbjct: 77 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNA----TNITGFLNILHAA 132
Query: 119 KRFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEF 178
K V+ +S S +P KV E + Y V+K + E A +
Sbjct: 133 KNAQVQSFTYAASSSTYGDHPALP-KV--------EENIGNPLSPYAVTKYVNEIYAQVY 183
Query: 179 AEKHGVDVVAIHPATCLGPLMQP 201
A +G + + G P
Sbjct: 184 ARTYGFKTIGLRYFNVFGRRQDP 206
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 27/203 (13%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGD-------ANLR 62
+T +TG GFIG+ L++ LL N I F + H + L +
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS---TGHQYNLDEVKTLVSTEQWSRFC 82
Query: 63 VFEADVLDSGAVSRAVEGCKGVFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAA 118
E D+ D + ++G V H A+ P ++ DP+ + G LN+L AA
Sbjct: 83 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNA----TNITGFLNILHAA 138
Query: 119 KRFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEF 178
K V+ +S S +P KV E + Y V+K + E A +
Sbjct: 139 KNAQVQSFTYAASSSTYGDHPALP-KV--------EENIGNPLSPYAVTKYVNEIYAQVY 189
Query: 179 AEKHGVDVVAIHPATCLGPLMQP 201
A +G + + G P
Sbjct: 190 ARTYGFKTIGLRYFNVFGRRQDP 212
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 27/203 (13%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGD-------ANLR 62
+T +TG GFIG+ L++ LL N I F + H + L +
Sbjct: 39 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS---TGHQYNLDEVKTLVSTEQWSRFC 95
Query: 63 VFEADVLDSGAVSRAVEGCKGVFHVAS----PCTLEDPVDPEKELILPAVQGTLNVLEAA 118
E D+ D + ++G V H A+ P ++ DP+ + G LN+L AA
Sbjct: 96 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNA----TNITGFLNILHAA 151
Query: 119 KRFGVRRVVVTSSISAIVPNPGWKGKVFDETSWTDLEYCKSRKKWYPVSKTLAEKAAWEF 178
K V+ +S S +P KV E + Y V+K + E A +
Sbjct: 152 KNAQVQSFTYAASSSTYGDHPALP-KV--------EENIGNPLSPYAVTKYVNEIYAQVY 202
Query: 179 AEKHGVDVVAIHPATCLGPLMQP 201
A +G + + G P
Sbjct: 203 ARTYGFKTIGLRYFNVFGRRQDP 225
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYT----SINATVFPGSDSSHLFALPGAGDANLRVFE 65
+ V VTG GF G+WL L + +++A P LF + D +
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPS-----LFEIVRLNDL-MESHI 63
Query: 66 ADVLDSGAVSRAVEGCKG--VFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGV 123
D+ D + ++ K VFH+A+ + + + V GT+++LE K+ G
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 124 RRVVVTSSISAIVPNPGW 141
+ VV + N W
Sbjct: 124 IKAVVNITSDKCYDNREW 141
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 260
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 3 SEAEKEEETVCVTGANGFIGTWLVKTLLDNNY--TSINATVFPGSD 46
S +++ V +TGA+ IG LV+ D NY + + ++ P +D
Sbjct: 22 SXXRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD 67
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of
Non-Ribosomal Peptide Synthetase From Mycobacterium
Tuberculosis
Length = 478
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 8 EEETVCVTGANGFIGTWLVKTLL 30
E TV +TGA GF+G +LV LL
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELL 94
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSI 37
+ VTG GFIG+ +VK L D T I
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDI 74
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 10 ETVCVTGANGFIGTWLVKTLLDNNYTSINATVFPGSDSSHLFALPGAGDANLRVFEADVL 69
+ + + GA+GF+G+ L+ L+ + P + +L+V +ADV
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE--------NEHLKVKKADV- 55
Query: 70 DSGAVSRAVEGCKGVFHVASPCTLEDPVDPEKELILPAVQGTLNVLEAAKRFGVRRVVVT 129
++ E CKG V S +P ++ ++ L +++ K+ GV R +
Sbjct: 56 --SSLDEVCEVCKGADAVISAF---NPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLXV 110
Query: 130 SSISAIVPNPGWK 142
++ PG +
Sbjct: 111 GGAGSLFIAPGLR 123
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 12 VCVTGANGFIGTWLVKTLLDNNYTSI 37
+ VTG GFIG+ +VK L D T I
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDI 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,458,725
Number of Sequences: 62578
Number of extensions: 386133
Number of successful extensions: 978
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 76
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)