BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021822
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/306 (57%), Positives = 221/306 (72%), Gaps = 4/306 (1%)
Query: 1 MAVDYFYNDFEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSH 60
M VDY+ D+E AEP R++SL+NT P DFG+D YFVAD RG+E VV+Y+A Q+L
Sbjct: 160 MVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKT 219
Query: 61 NN--NKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFV 118
++ KI DPRL+L K VR+I S V + TED SVY A+YV+V+ S+GVLQSDLI F
Sbjct: 220 DDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFK 279
Query: 119 PRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENEL 178
P+LP WK AI FDMA+YTKIF+KFP KFWP G G EF LYA RGY+ +WQ E +
Sbjct: 280 PKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQY 339
Query: 179 PGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRL 238
P N++ VTVTDEESRRIEQQS+++TKAEIMQVL+KMF GK +P+ +L+P+WWS+R
Sbjct: 340 PDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMF-PGKDVPDATDILVPRWWSDRF 398
Query: 239 YKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298
YKG++SNWP G + Y L+ P GR+YF GEHT+ Y GYV GAY SGI++A LI C
Sbjct: 399 YKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCA 458
Query: 299 -KHFCE 303
K C+
Sbjct: 459 QKKMCK 464
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/306 (56%), Positives = 220/306 (71%), Gaps = 4/306 (1%)
Query: 1 MAVDYFYNDFEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSH 60
M VDY+ D+E AEP R++SL+NT P DFG+D YFVAD RG+E VV+Y+A Q+L
Sbjct: 160 MVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKT 219
Query: 61 NN--NKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFV 118
++ KI DPRL+L K VR+I S V + TED SVY A+YV+V+ S+GVLQSDLI F
Sbjct: 220 DDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFK 279
Query: 119 PRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENEL 178
P+LP WK AI FDMA+YT IF+KFP KFWP G G EF LYA RGY+ +WQ E +
Sbjct: 280 PKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQY 339
Query: 179 PGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRL 238
P N++ VTVTDEESRRIEQQS+++TKAEIMQVL+KMF GK +P+ +L+P+WWS+R
Sbjct: 340 PDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMF-PGKDVPDATDILVPRWWSDRF 398
Query: 239 YKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298
YKG++SNWP G + Y L+ P GR+YF GEHT+ Y GYV GAY SGI++A LI C
Sbjct: 399 YKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCA 458
Query: 299 -KHFCE 303
K C+
Sbjct: 459 QKKMCK 464
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 70 LKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAI 129
++LK V+ I+ S ++V +TT DG+ Y A V+VTV + +LQ I F P L K AI
Sbjct: 554 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 613
Query: 130 NNFDMAIYTKIFMKFPYKFWPTG-PGTEFLLY---AHETRGYFTIWQHLENELPGENMIF 185
N+ I KI ++FPY+FW + G +F + + RG F ++ ++ + +++
Sbjct: 614 NSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQ-KKHSVLM 672
Query: 186 VTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSN 245
+ E + +K+ + M L+++F +++P+P + +W ++ + +YS
Sbjct: 673 SVIAGEAVASVRTLDDKQVLQQCMATLRELFKE-QEVPDPTKYFVTRWSTDPWIQMAYSF 731
Query: 246 WPNGYTLHSYHDLQQPF-GRIYFAGEHTNSTYLGYVDGAYFSGINTANAL 294
G + +Y + + G ++FAGE TN + V GAY SG+ A+ +
Sbjct: 732 VKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 781
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 70 LKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAI 129
++LK V+ I+ S ++V +TT DG+ Y A V+VTV + +LQ I F P L K AI
Sbjct: 566 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 625
Query: 130 NNFDMAIYTKIFMKFPYKFWPTG-PGTEFLLY---AHETRGYFTIWQHLENELPGENMIF 185
N+ I KI ++FPY+FW + G +F + + RG F ++ ++ + +++
Sbjct: 626 NSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQ-KKHSVLM 684
Query: 186 VTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSN 245
+ E + +K+ + M L+++F +++P+P + +W ++ + +YS
Sbjct: 685 SVIAGEAVASVRTLDDKQVLQQCMATLRELFKE-QEVPDPTKYFVTRWSTDPWIQMAYSF 743
Query: 246 WPNGYTLHSYHDLQQPF-GRIYFAGEHTNSTYLGYVDGAYFSGINTANAL 294
G + +Y + + G ++FAGE TN + V GAY SG+ A+ +
Sbjct: 744 VKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 793
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 70 LKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAI 129
++LK V+ I+ S ++V +TT DG+ Y A V+VTV + +LQ I F P L K AI
Sbjct: 546 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 605
Query: 130 NNFDMAIYTKIFMKFPYKFWPTG-PGTEFLLY---AHETRGYFTIWQHLENELPGENMIF 185
N+ I KI ++FPY+FW + G +F + + RG F ++ ++ + +++
Sbjct: 606 NSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQ-KKHSVLM 664
Query: 186 VTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSN 245
+ E + +K+ + M L+++F +++P+P + +W ++ + +YS
Sbjct: 665 SVIAGEAVASVRTLDDKQVLQQCMATLRELFKE-QEVPDPTKYFVTRWSTDPWIQMAYSF 723
Query: 246 WPNGYTLHSYHDLQQPF-GRIYFAGEHTNSTYLGYVDGAYFSGINTANAL 294
G + +Y + + G ++FAGE TN + V GAY SG+ A+ +
Sbjct: 724 VKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 773
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 33/247 (13%)
Query: 70 LKLKKTVRKI--NQSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 462 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 521
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 522 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 574
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 575 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADP 633
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 634 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 693
Query: 285 FSGINTA 291
SG+ A
Sbjct: 694 LSGLREA 700
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 33/250 (13%)
Query: 70 LKLKKTVRKIN--QSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 413 IKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADP 584
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 585 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 644
Query: 285 FSGINTANAL 294
SG+ A +
Sbjct: 645 LSGLREAGRI 654
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 33/250 (13%)
Query: 70 LKLKKTVRKI--NQSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADP 584
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 585 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 644
Query: 285 FSGINTANAL 294
SG+ A +
Sbjct: 645 LSGLREAGRI 654
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 33/250 (13%)
Query: 70 LKLKKTVRKI--NQSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 414 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 473
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 474 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 526
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 527 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADP 585
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 586 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 645
Query: 285 FSGINTANAL 294
SG+ A +
Sbjct: 646 LSGLREAGRI 655
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 33/250 (13%)
Query: 70 LKLKKTVRKI--NQSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADP 584
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 585 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 644
Query: 285 FSGINTANAL 294
SG+ A +
Sbjct: 645 LSGLREAGRI 654
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 33/247 (13%)
Query: 70 LKLKKTVRKI--NQSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 466 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 525
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 526 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 578
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 579 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADP 637
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 638 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 697
Query: 285 FSGINTA 291
SG+ A
Sbjct: 698 LSGLREA 704
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 33/250 (13%)
Query: 70 LKLKKTVRKI--NQSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADP 584
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 585 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 644
Query: 285 FSGINTANAL 294
SG+ A +
Sbjct: 645 LSGLREAGRI 654
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 33/248 (13%)
Query: 70 LKLKKTVRKI--NQSKNKVII----TTEDGSVYHANYVIVTVSVGVL--QSDLIGFVPRL 121
+KL VR++ S +VI +T +Y + V+ T+ +GVL Q + FVP L
Sbjct: 584 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 643
Query: 122 PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET---RG-YFTIWQHLENE 177
P WK A+ K+ + F FW P + T RG F W
Sbjct: 644 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 696
Query: 178 LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
L ++ V E + +E S+ + +LK +FG+ +P+P ++ +W ++
Sbjct: 697 LYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGS-SAVPQPKETVVSRWRADP 755
Query: 238 LYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVDGAY 284
+GSYS G + + Y + QP R++FAGEHT Y V GA
Sbjct: 756 WARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGAL 815
Query: 285 FSGINTAN 292
SG+ A
Sbjct: 816 LSGLREAG 823
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 228 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 285
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 340
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 399
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + GY++GA +G A ++ + E
Sbjct: 400 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 459
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 227 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 284
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 285 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 339
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 340 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 398
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + GY++GA +G A ++ + E
Sbjct: 399 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 458
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 228 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 285
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 340
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 399
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + GY++GA +G A ++ + E
Sbjct: 400 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 459
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 228 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 285
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 340
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 399
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + GY++GA +G A ++ + E
Sbjct: 400 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 459
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 9/238 (3%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 227 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 284
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGEN--MIFV 186
I + K + + FW ++ E + L++ P N I
Sbjct: 285 ITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAATLDDTKPEGNYAAIMG 341
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+ +
Sbjct: 342 FILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYTTY 400
Query: 247 -PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
P G L+QP RIYFAG T + + GY++GA +G A ++ + E
Sbjct: 401 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 458
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 9/238 (3%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
++KL V ++QS + +II T + Y YVI + + I F P LP +
Sbjct: 226 QVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIPPTLTAK--IHFRPELPAERNQL 283
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENM--IFV 186
I M K M + FW ++ E I L++ P ++ I
Sbjct: 284 IQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDA---PISITLDDTKPDGSLPAIMG 340
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
+ ++ R+ + ++ K +I ++ K+ G+ + + P W + G Y+ +
Sbjct: 341 FILARKADRLAKLHKEIRKKKICELYAKVLGSQEAL-HPVHYEEKNWCEEQYSGGCYTAY 399
Query: 247 -PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
P G ++QP GRI+FAG T + + GY++GA +G A ++ L E
Sbjct: 400 FPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTE 457
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 9/238 (3%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
++KL V ++QS + +II T + Y YVI + + I F P LP +
Sbjct: 237 QVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIPPTLTAK--IHFRPELPAERNQL 294
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENM--IFV 186
I M K M + FW ++ E I L++ P ++ I
Sbjct: 295 IQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDA---PISITLDDTKPDGSLPAIMG 351
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
+ ++ R+ + ++ K +I ++ K+ G+ + + P W + G Y+ +
Sbjct: 352 FILARKADRLAKLHKEIRKKKICELYAKVLGSQEAL-HPVHYEEKNWCEEQYSGGCYTAY 410
Query: 247 -PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
P G ++QP GRI+FAG T + + GY++GA +G A ++ L E
Sbjct: 411 FPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTE 468
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 9/238 (3%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
++KL V ++QS + +II T + Y YVI + + I F P LP +
Sbjct: 226 QVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIPPTLTAK--IHFRPELPAERNQL 283
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENM--IFV 186
I M K M + FW ++ E I L++ P ++ I
Sbjct: 284 IQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDA---PISITLDDTKPDGSLPAIMG 340
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
+ ++ R+ + ++ K +I ++ K+ G+ + + P W + G Y+ +
Sbjct: 341 FILARKADRLAKLHKEIRKKKICELYAKVLGSQEAL-HPVHYEEKNWCEEQYSGGCYTAY 399
Query: 247 -PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
P G ++QP GRI+FAG T + + GY++GA +G A ++ L E
Sbjct: 400 FPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTE 457
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 228 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 285
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 340
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 399
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + G+++GA +G A ++ + E
Sbjct: 400 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGFMEGAVEAGERAAREILHAMGKIPE 459
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 228 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 285
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 340
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 399
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + G+++GA +G A ++ + E
Sbjct: 400 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGWMEGAVEAGERAAREILHAMGKIPE 459
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 228 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 285
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 340
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 399
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + G+++GA +G A ++ + E
Sbjct: 400 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGHMEGAVEAGERAAREILHAMGKIPE 459
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 108/240 (45%), Gaps = 13/240 (5%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
R+KL++ V I+Q++ V++ T + +Y A YVI + + I F P LP+ +
Sbjct: 228 RVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM 285
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGP--GTEFLLYAHETRGYFTIWQHLENELPGEN--MI 184
I + K + + FW GT ++ E +T L++ P N I
Sbjct: 286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGT-MIIDGEEAPVAYT----LDDTKPEGNYAAI 340
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYS 244
+ ++R++ + ++++ ++ ++ K+ G+ + + EP W + G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCYT 399
Query: 245 NW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFCE 303
+ P G L+QP RIYFAG T + + G ++GA +G A ++ + E
Sbjct: 400 TYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGLMEGAVEAGERAAREILHAMGKIPE 459
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 9/233 (3%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLA 128
++KL V I+Q+ + +I+ T + Y YVI + + + I F P LP +
Sbjct: 245 KVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPP--ILTAKIHFKPELPPERNQL 302
Query: 129 INNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENM--IFV 186
I M K + + FW ++ E I L++ P ++ I
Sbjct: 303 IQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEA---PIAITLDDTKPDGSLPAIMG 359
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
+ ++ R+ + + K +I ++ K+ G+ + + P W + G Y+ +
Sbjct: 360 FILARKADRLAKLHKDIRKRKICELYAKVLGSQEAL-YPVHYEEKNWCEEQYSGGCYTAY 418
Query: 247 -PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298
P G ++QP GRIYFAG T + + GY++GA +G A ++ L
Sbjct: 419 FPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNAL 471
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 26/230 (11%)
Query: 68 PRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKL 127
P ++L+ V I+QS + V +T +DG + A+ VIV + + I F P LP ++
Sbjct: 218 PEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRS 275
Query: 128 AINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENMIFVT 187
I KI + G E + + T++ + E + + V
Sbjct: 276 VIEEGHGGQGLKILIHVR--------GAEAGIECVGDGIFPTLYDYCE--VSESERLLVA 325
Query: 188 VTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIP--KWWSNRLYKGSYSN 245
TD S + K ++ L PE + + I W ++ L++G +
Sbjct: 326 FTDSGS--FDPTDIGAVKDAVLYYL----------PEVEVLGIDYHDWIADPLFEGPWVA 373
Query: 246 WPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295
G + +L +P GRI+F G + + GY++GA + NA++
Sbjct: 374 PRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAIL 423
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 26/230 (11%)
Query: 68 PRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKL 127
P ++L+ V I+QS + V +T +DG + A+ VIV + + I F P LP ++
Sbjct: 218 PEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRS 275
Query: 128 AINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENMIFVT 187
I KI + G E + + T++ + E + + V
Sbjct: 276 VIEEGHGGQGLKILIHVR--------GAEAGIECVGDGIFPTLYDYCE--VSESERLLVA 325
Query: 188 VTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIP--KWWSNRLYKGSYSN 245
TD S + K ++ L PE + + I W ++ L++G +
Sbjct: 326 FTDSGS--FDPTDIGAVKDAVLYYL----------PEVEVLGIDYHDWIADPLFEGPWVA 373
Query: 246 WPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295
G + +L +P GRI+F G + + GY++GA + NA++
Sbjct: 374 PRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAIL 423
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 64 KITDPRLKLKKTVRKINQSKNKVIIT----TEDGSVYHANYVIVTVSVGVLQSDLIGFVP 119
+ + ++K V KI Q+ N+V +T +D S A+YVIV + + I F P
Sbjct: 249 RAIEEKVKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTTSRAARR--IQFEP 306
Query: 120 RLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELP 179
LP K+ A+ + TKIF+ KFW G + F I+ N
Sbjct: 307 PLPPKKQHALRSVHYRSGTKIFLTCSSKFWED-DGIHGGKSTTDLPSRF-IYYPNHNFST 364
Query: 180 GENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTM------LIPKW 233
G +I +++ + K + L + Q+P+ + +I KW
Sbjct: 365 GVGVIIAYGIGDDANFFQALKFKDCADIVFNDLSLI----HQLPKEEIQSFCYPSMIQKW 420
Query: 234 WSNRLYKGSYSNWPNGYTLHSYHD-LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTA 291
++ G+ + + Y + + L P GRI+FAGE+T + G++D SG+ A
Sbjct: 421 SLDKYAMGAITTF-TPYQFQRFSEALTAPQGRIFFAGEYTAEAH-GWIDSTIKSGLTAA 477
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 34 GEDSYFVADPRG-----FETVVHYIANQFLSHNNNKITDPR--LKLKKTVRKINQSKNK- 85
+D+YF R +++VV IA F P+ LKL V+ I + +K
Sbjct: 184 AKDTYFGHQGRAAFALNYDSVVQRIAQSF----------PQNWLKLSCEVKSITREPSKN 233
Query: 86 VIITTEDGSVYHANYVIVTVSVGVL------QSDLIGFVPRLPLWKKLAINNFD---MAI 136
V + EDG+VY+A+YVI+TV VL + +L G + P K + + FD
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 137 YTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLEN 176
K+ +F W + ++ + A+ T + I ++ EN
Sbjct: 294 LGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN 332
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 34 GEDSYFVADPRG-----FETVVHYIANQFLSHNNNKITDPR--LKLKKTVRKINQSKNK- 85
+D+YF R +++VV IA F P+ LKL V+ I + +K
Sbjct: 184 AKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCEVKSITREPSKN 233
Query: 86 VIITTEDGSVYHANYVIVTVSVGVL------QSDLIGFVPRLPLWKKLAINNFD---MAI 136
V + EDG+VY+A+YVI+TV VL + +L G + P K + + FD
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 137 YTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLEN 176
K+ +F W + ++ + A+ T + I ++ EN
Sbjct: 294 LGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN 332
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 34 GEDSYFVADPRG-----FETVVHYIANQFLSHNNNKITDPR--LKLKKTVRKINQSKNK- 85
+D+YF R +++VV IA F P+ LKL V+ I + +K
Sbjct: 184 AKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCEVKSITREPSKN 233
Query: 86 VIITTEDGSVYHANYVIVTVSVGVL------QSDLIGFVPRLPLWKKLAINNFD---MAI 136
V + EDG+VY+A+YVI+TV VL + +L G + P K + + FD
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 137 YTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLEN 176
K+ +F W + ++ + A+ T + I ++ EN
Sbjct: 294 LGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN 332
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 34 GEDSYFVADPRG-----FETVVHYIANQFLSHNNNKITDPR--LKLKKTVRKINQSKNK- 85
+D+YF R +++VV IA F P+ LKL V+ I + +K
Sbjct: 184 AKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCEVKSITREPSKN 233
Query: 86 VIITTEDGSVYHANYVIVTVSVGVL------QSDLIGFVPRLPLWKKLAINNFD---MAI 136
V + EDG+VY+A+YVI+TV VL + +L G + P K + + FD
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 137 YTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLEN 176
K+ +F W + ++ + A+ T + I ++ EN
Sbjct: 294 LGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN 332
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 34 GEDSYFVADPRG-----FETVVHYIANQFLSHNNNKITDPR--LKLKKTVRKINQSKNK- 85
+D+YF R +++VV IA F P+ LKL V+ I + +K
Sbjct: 184 AKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCEVKSITREPSKN 233
Query: 86 VIITTEDGSVYHANYVIVTVSVGVL------QSDLIGFVPRLPLWKKLAINNFD---MAI 136
V + EDG+VY+A+YVI+TV VL + +L G + P K + + FD
Sbjct: 234 VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGA 293
Query: 137 YTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLEN 176
K+ +F W + ++ + A+ T + I ++ EN
Sbjct: 294 LGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN 332
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 18/230 (7%)
Query: 72 LKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINN 131
L VR + +++ + + A+ VI+ V + I + P LP + +
Sbjct: 231 LNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQH 288
Query: 132 FDMAIYTKIFMKFPYKFWPTG--PGTEFLLYAHETRGYFTIWQHL---ENELPGENMIFV 186
+ + K+ + FW GT F G + Q + N +
Sbjct: 289 QSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
V+DE++ + + S ++ KA I+ L + G + EP W S +G Y+
Sbjct: 341 FVSDEKADAMFELSAEERKATILASLARYLG--PKAEEPVVYYESDWGSEEWTRGCYTAS 398
Query: 247 PNGYTLHSY-HDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295
+ LH Y D + P G I+F+ + G+VDGA G TA +I
Sbjct: 399 FDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYGHVDGAVRMGQRTAADII 448
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 19/238 (7%)
Query: 64 KITDPRLKLKKTVRKINQSKNKVIIT----TEDGSVYHANYVIVTVSVGVLQSDLIGFVP 119
+ + ++ L V KI ++ KV + ++ + A+YVIV + + I F P
Sbjct: 249 RAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRATRR--IKFEP 306
Query: 120 RLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELP 179
LP K A+ + TKIF+ KFW G + F I+ N
Sbjct: 307 PLPPKKAHALRSVHYRSGTKIFLTCTKKFWED-EGIHGGKSTTDLPSRF-IYYPNHNFTS 364
Query: 180 GENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTM------LIPKW 233
G +I +++ + K ++ L + Q+P + +I KW
Sbjct: 365 GVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIH----QLPREEIQTFCYPSMIQKW 420
Query: 234 WSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTA 291
++ G + + H L RIYFAGEHT + G++D SG+ A
Sbjct: 421 SLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGLRAA 477
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 18/234 (7%)
Query: 72 LKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINN 131
L VR + +++ + + A+ VI+ V + I + P LP + +
Sbjct: 231 LNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQH 288
Query: 132 FDMAIYTKIFMKFPYKFWPTG--PGTEFLLYAHETRGYFTIWQHL---ENELPGENMIFV 186
+ + K+ + FW GT F G + Q + N +
Sbjct: 289 QSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
V+DE++ + + S ++ KA I+ L + G + EP W S +G+Y+
Sbjct: 341 FVSDEKADAMFELSAEERKATILASLARYLG--PKAEEPVVYYESDWGSEEWTRGAYAAS 398
Query: 247 PNGYTLHSY-HDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299
+ LH Y D + P G I+F+ + +VDGA G TA +I K
Sbjct: 399 FDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSK 452
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 18/230 (7%)
Query: 72 LKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINN 131
L VR + +++ + + A+ VI+ V + I + P LP + +
Sbjct: 231 LNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQH 288
Query: 132 FDMAIYTKIFMKFPYKFWPTG--PGTEFLLYAHETRGYFTIWQHL---ENELPGENMIFV 186
+ + K+ + FW GT F G + Q + N +
Sbjct: 289 QSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
V+DE++ + + S ++ KA I+ L + G + EP W S +G Y+
Sbjct: 341 FVSDEKADAMFELSAEERKATILASLARYLG--PKAEEPVVYYESDWGSEEWTRGCYAAS 398
Query: 247 PNGYTLHSY-HDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295
+ LH Y D + P G I+F+ + +VDGA G TA +I
Sbjct: 399 FDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADII 448
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 18/230 (7%)
Query: 72 LKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINN 131
L VR + +++ + + A+ VI+ V + I + P LP + +
Sbjct: 231 LNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQH 288
Query: 132 FDMAIYTKIFMKFPYKFWPTG--PGTEFLLYAHETRGYFTIWQHL---ENELPGENMIFV 186
+ + K+ + FW GT F G + Q + N +
Sbjct: 289 QSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 187 TVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNW 246
V+DE++ + + S ++ KA I+ L + G + EP W S +G Y+
Sbjct: 341 FVSDEKADAMFELSAEERKATILASLARYLG--PKAEEPVVYYESDWGSEEWTRGCYAAS 398
Query: 247 PNGYTLHSY-HDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295
+ LH Y D + P G I+F+ + +VDGA G TA +I
Sbjct: 399 FDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADII 448
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 90/233 (38%), Gaps = 19/233 (8%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGS----VYHANYVIVTVSVGVLQSDLIGFVPRLPLW 124
++ V KI Q+ KV + E S A+YVIV + ++ LI F P L
Sbjct: 254 KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPK 311
Query: 125 KKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENMI 184
K A+ + TKIF+ KFW G + F I+ N G +I
Sbjct: 312 KAHALRSVHYRSGTKIFLTCTTKFWEDD-GIHGGKSTTDLPSRF-IYYPNHNFTNGVGVI 369
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTM------LIPKWWSNRL 238
+++ + K + L + Q+P+ D +I KW ++
Sbjct: 370 IAYGIGDDANFFQALDFKDCADIVFNDLSLI----HQLPKKDIQSFCYPSVIQKWSLDKY 425
Query: 239 YKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTA 291
G + + H L GRIYFAGE+T + G++D SG+ A
Sbjct: 426 AMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAA 477
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 24/227 (10%)
Query: 76 VRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMA 135
VR + ++ +T DG + A V+ T+ + VL + I F P L + A+ ++
Sbjct: 279 VRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVS 336
Query: 136 IYTKIFMKFPYKFWPTGPGTEF----LLYAHETRGYFTIWQHLENELPGENMIFVTVTDE 191
+ TK+ + K + G + L YA + P N V +
Sbjct: 337 MCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIG-----------DGTTPAGNTHLVCFGNS 385
Query: 192 ESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYT 251
+ + ++T + Q+ FG + ++ W + KG++ G
Sbjct: 386 ANHIQPDEDVRETLKAVGQLAPGTFGVKR-------LVFHNWVKDEFAKGAWFFSRPGMV 438
Query: 252 LHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298
L++ G + FA + ++DGA G A +++ L
Sbjct: 439 SECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEEL 485
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 24/227 (10%)
Query: 76 VRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMA 135
VR + ++ +T DG + A V+ T+ + VL + I F P L + A+ ++
Sbjct: 279 VRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVS 336
Query: 136 IYTKIFMKFPYKFWPTGPGTEF----LLYAHETRGYFTIWQHLENELPGENMIFVTVTDE 191
+ TK+ + K + G + L YA + P N V +
Sbjct: 337 MCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIG-----------DGTTPAGNTHLVCFGTD 385
Query: 192 ESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYT 251
+ + ++T + Q+ FG + ++ W + KG++ G
Sbjct: 386 ANHIQPDEDVRETLKAVGQLAPGTFGVKR-------LVFHNWVKDEFAKGAWFFSRPGMV 438
Query: 252 LHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298
L++ G + FA + ++DGA G A +++ L
Sbjct: 439 SECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEEL 485
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 24/227 (10%)
Query: 76 VRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMA 135
VR + ++ +T DG + A V+ T+ + VL + I F P L + A+ ++
Sbjct: 279 VRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVS 336
Query: 136 IYTKIFMKFPYKFWPTGPGTEF----LLYAHETRGYFTIWQHLENELPGENMIFVTVTDE 191
+ TK+ + K + G + L YA + P N V +
Sbjct: 337 MCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIG-----------DGTTPAGNTHLVCFGTD 385
Query: 192 ESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYT 251
+ + ++T + Q+ FG + ++ W + KG++ G
Sbjct: 386 ANHIQPDEDVRETLKAVGQLAPGTFGVKR-------LVFHNWVKDEFAKGAWFFSRPGMV 438
Query: 252 LHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298
L++ G + FA + ++DGA G A +++ L
Sbjct: 439 SECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEEL 485
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 87/229 (37%), Gaps = 19/229 (8%)
Query: 69 RLKLKKTVRKINQSKNKVIITTEDGS----VYHANYVIVTVSVGVLQSDLIGFVPRLPLW 124
++ L V KI Q +V +T + A+YVIV + + I F P LP
Sbjct: 267 KVHLNARVIKIQQDVKEVTVTYQTSEKETLSVTADYVIVCTTSRAARR--IKFEPPLPPK 324
Query: 125 KKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENMI 184
K A+ + TKIF+ KFW G + F I+ N G +I
Sbjct: 325 KAHALRSVHYRSGTKIFLTCTKKFWEDD-GIHGGKSTTDLPSRF-IYYPNHNFPNGVGVI 382
Query: 185 FVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTM------LIPKWWSNRL 238
+++ E + ++ L + Q+P+ + +I +W ++
Sbjct: 383 IAYGIGDDANYFEALDFEDCGDIVINDLSLI----HQLPKEEIQAICRPSMIQRWSLDKY 438
Query: 239 YKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSG 287
G + + H L P RIYFAGE+T + G++ SG
Sbjct: 439 AMGGITTFTPYQFQHFSEALTAPVDRIYFAGEYTAQAH-GWIASTIKSG 486
>pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
pdb|3OU6|A Chain A, Dhpi-Sam Complex
pdb|3OU6|B Chain B, Dhpi-Sam Complex
pdb|3OU6|C Chain C, Dhpi-Sam Complex
pdb|3OU6|D Chain D, Dhpi-Sam Complex
pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
Length = 218
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 169 TIWQHLENEL-PGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLK 213
W+ + + + PG + FV VTD E RR+EQQ + + + + + L+
Sbjct: 127 AFWESVRSAVAPGGVVEFVDVTDHE-RRLEQQDDSEPEVAVRRTLQ 171
>pdb|4GAC|A Chain A, High Resolution Structure Of Mouse Aldehyde Reductase
(akr1a4) In Its Apo-form
pdb|4GAC|B Chain B, High Resolution Structure Of Mouse Aldehyde Reductase
(akr1a4) In Its Apo-form
Length = 324
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 194 RRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNR 237
R I+ S + EI + LK+ G+GK +P + + K W+ +
Sbjct: 41 RHIDCASVYGNETEIGEALKESVGSGKAVPREELFVTSKLWNTK 84
>pdb|1B0Z|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|1C7R|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|2PGI|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
Length = 445
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 253 HSYHDLQQPFGRIYFAGEHTNSTYLGYV 280
H++H+ +IYFAG++ +STY+ ++
Sbjct: 96 HTFHNQMNDTTQIYFAGQNISSTYISHL 123
>pdb|2E1M|C Chain C, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 181
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 250 YTLH---SYH-DLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANAL 294
YT H ++H D+ +P G +YFAGEH + + +++GA + + A A+
Sbjct: 101 YTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHA-WIEGAVETAVRAAIAV 148
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 45 GFETVV-HYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIV 103
GF+++V +A F H N +++ VR I +++ I T D YHA YVI+
Sbjct: 65 GFKSIVGSELAKLFADHAANY---AKIREGVEVRSIKKTQGGFDIETND-DTYHAKYVII 120
Query: 104 T 104
T
Sbjct: 121 T 121
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
Length = 490
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 101 VIVTVSVGVLQSDLIGFVPRLPLWKKLAINN-FDMAIY-------TKIFMKFPYKFWPTG 152
++VT+++ ++ ++G + RLP W + + N F+ A+Y + +++ F P+G
Sbjct: 403 LLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSG 462
Query: 153 P 153
P
Sbjct: 463 P 463
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,950,026
Number of Sequences: 62578
Number of extensions: 435239
Number of successful extensions: 1119
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1029
Number of HSP's gapped (non-prelim): 74
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)