Query 021822
Match_columns 307
No_of_seqs 122 out of 1341
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02676 polyamine oxidase 100.0 1.8E-44 4E-49 337.2 29.5 298 3-302 180-478 (487)
2 PLN02976 amine oxidase 100.0 1.5E-38 3.3E-43 313.7 27.8 273 10-300 901-1188(1713)
3 PLN03000 amine oxidase 100.0 9.4E-38 2E-42 300.8 27.6 275 10-300 347-625 (881)
4 PLN02268 probable polyamine ox 100.0 7.7E-37 1.7E-41 284.2 28.8 263 12-298 171-434 (435)
5 PLN02529 lysine-specific histo 100.0 8.6E-37 1.9E-41 293.2 28.1 274 9-300 322-600 (738)
6 PLN02568 polyamine oxidase 100.0 2.7E-36 5.9E-41 284.2 29.2 276 13-299 210-536 (539)
7 PLN02328 lysine-specific histo 100.0 2.3E-36 5.1E-41 291.3 26.3 275 10-300 403-681 (808)
8 COG1231 Monoamine oxidase [Ami 100.0 4.6E-34 9.9E-39 253.8 20.2 240 43-299 205-448 (450)
9 KOG0685 Flavin-containing amin 100.0 1.5E-33 3.2E-38 250.3 18.5 289 7-301 186-494 (498)
10 PF01593 Amino_oxidase: Flavin 100.0 1.4E-29 3E-34 234.1 23.6 247 35-295 201-450 (450)
11 KOG0029 Amine oxidase [Seconda 100.0 1.7E-28 3.6E-33 227.9 21.6 247 37-300 211-461 (501)
12 TIGR00562 proto_IX_ox protopor 99.9 4.2E-25 9E-30 207.0 23.6 266 8-299 160-461 (462)
13 TIGR03467 HpnE squalene-associ 99.9 1.6E-25 3.5E-30 207.0 20.1 258 9-296 156-419 (419)
14 PLN02612 phytoene desaturase 99.9 1.4E-24 3.1E-29 206.8 21.0 268 10-300 269-550 (567)
15 TIGR02731 phytoene_desat phyto 99.9 2.4E-24 5.3E-29 201.3 21.1 263 10-295 174-453 (453)
16 PRK07233 hypothetical protein; 99.9 8.6E-24 1.9E-28 196.5 22.1 266 8-299 155-432 (434)
17 PLN02576 protoporphyrinogen ox 99.9 1.1E-23 2.5E-28 199.0 21.8 234 43-299 235-488 (496)
18 PRK11883 protoporphyrinogen ox 99.9 2.4E-23 5.3E-28 194.4 23.0 260 8-296 164-450 (451)
19 PRK12416 protoporphyrinogen ox 99.9 6.5E-23 1.4E-27 192.2 25.2 264 9-299 170-462 (463)
20 PLN02487 zeta-carotene desatur 99.9 5.8E-21 1.3E-25 180.6 19.8 266 11-298 257-553 (569)
21 TIGR02732 zeta_caro_desat caro 99.9 1.9E-20 4E-25 175.4 17.8 264 10-295 180-474 (474)
22 COG3380 Predicted NAD/FAD-depe 99.8 6.7E-21 1.5E-25 158.3 11.2 225 39-298 101-331 (331)
23 COG1232 HemY Protoporphyrinoge 99.8 2.3E-19 5E-24 163.5 20.2 257 11-295 161-443 (444)
24 TIGR02733 desat_CrtD C-3',4' d 99.8 1.2E-18 2.6E-23 164.6 22.5 269 12-297 199-491 (492)
25 PRK07208 hypothetical protein; 99.8 2E-18 4.4E-23 162.6 20.1 266 8-298 156-461 (479)
26 TIGR02734 crtI_fam phytoene de 99.7 5.4E-16 1.2E-20 147.0 15.8 270 11-300 187-494 (502)
27 TIGR02730 carot_isom carotene 99.7 3.6E-15 7.8E-20 140.9 20.5 241 43-298 225-492 (493)
28 KOG1276 Protoporphyrinogen oxi 99.4 2.6E-11 5.7E-16 107.5 15.3 265 8-295 179-490 (491)
29 KOG4254 Phytoene desaturase [C 99.3 8.4E-11 1.8E-15 104.9 17.4 246 34-301 253-549 (561)
30 COG1233 Phytoene dehydrogenase 99.1 2.6E-10 5.6E-15 107.5 8.7 72 32-111 211-283 (487)
31 COG3349 Uncharacterized conser 98.6 1.2E-07 2.6E-12 87.1 7.5 263 14-300 179-465 (485)
32 COG2907 Predicted NAD/FAD-bind 98.1 2.6E-05 5.6E-10 68.3 9.4 97 34-144 208-304 (447)
33 PTZ00363 rab-GDP dissociation 98.0 3.1E-05 6.7E-10 72.0 8.6 69 31-106 217-287 (443)
34 TIGR01988 Ubi-OHases Ubiquinon 97.6 0.016 3.4E-07 52.9 19.6 57 46-108 105-162 (385)
35 PRK08773 2-octaprenyl-3-methyl 97.5 0.021 4.6E-07 52.5 19.8 57 47-109 113-169 (392)
36 COG2081 Predicted flavoprotein 97.5 0.00046 1E-08 61.9 7.9 65 36-107 101-165 (408)
37 PRK07494 2-octaprenyl-6-methox 97.4 0.028 6E-07 51.6 18.9 203 46-296 110-316 (388)
38 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.047 1E-06 49.8 19.7 59 46-109 104-162 (382)
39 PRK09126 hypothetical protein; 97.2 0.12 2.5E-06 47.5 21.1 57 47-108 110-166 (392)
40 PRK07333 2-octaprenyl-6-methox 97.2 0.1 2.3E-06 47.9 20.3 56 47-108 111-166 (403)
41 PF01266 DAO: FAD dependent ox 97.1 0.0012 2.5E-08 59.4 6.9 64 38-109 136-203 (358)
42 PRK08020 ubiF 2-octaprenyl-3-m 97.0 0.18 3.9E-06 46.2 19.9 58 47-109 112-169 (391)
43 PRK08849 2-octaprenyl-3-methyl 97.0 0.17 3.6E-06 46.4 19.5 57 48-109 111-167 (384)
44 PRK08850 2-octaprenyl-6-methox 96.9 0.23 5E-06 45.8 20.0 58 46-108 110-167 (405)
45 PRK07364 2-octaprenyl-6-methox 96.8 0.29 6.2E-06 45.3 20.1 58 47-109 121-181 (415)
46 PF13738 Pyr_redox_3: Pyridine 96.8 0.0037 7.9E-08 51.7 6.4 57 46-108 81-137 (203)
47 PF07156 Prenylcys_lyase: Pren 96.8 0.0042 9.1E-08 56.4 7.1 64 35-110 118-188 (368)
48 PRK10157 putative oxidoreducta 96.6 0.12 2.5E-06 48.3 16.0 55 48-108 109-163 (428)
49 PRK10015 oxidoreductase; Provi 96.6 0.19 4.2E-06 46.9 17.2 53 49-108 110-163 (429)
50 PRK07608 ubiquinone biosynthes 96.5 0.67 1.5E-05 42.3 20.7 55 47-108 111-166 (388)
51 PF03486 HI0933_like: HI0933-l 96.4 0.012 2.7E-07 54.3 7.9 59 44-108 106-165 (409)
52 PRK05732 2-octaprenyl-6-methox 96.4 0.74 1.6E-05 42.1 21.7 56 48-108 113-168 (395)
53 COG0579 Predicted dehydrogenas 96.3 0.013 2.9E-07 54.0 7.4 59 46-110 152-212 (429)
54 COG0654 UbiH 2-polyprenyl-6-me 96.2 0.95 2.1E-05 41.5 21.8 61 45-110 102-163 (387)
55 TIGR03197 MnmC_Cterm tRNA U-34 96.2 0.016 3.4E-07 53.1 7.4 56 47-109 135-190 (381)
56 PF05834 Lycopene_cycl: Lycope 96.2 0.99 2.2E-05 41.3 20.7 56 46-108 86-141 (374)
57 TIGR01989 COQ6 Ubiquinone bios 96.0 0.86 1.9E-05 42.6 18.1 59 47-110 117-184 (437)
58 COG2509 Uncharacterized FAD-de 96.0 0.022 4.8E-07 52.1 6.8 57 46-108 172-229 (486)
59 TIGR02352 thiamin_ThiO glycine 95.9 0.031 6.7E-07 50.0 7.6 58 46-110 136-194 (337)
60 PF13454 NAD_binding_9: FAD-NA 95.6 0.057 1.2E-06 42.8 7.4 36 71-106 119-154 (156)
61 PRK11728 hydroxyglutarate oxid 95.6 0.046 1E-06 50.3 7.7 57 46-109 148-204 (393)
62 TIGR03862 flavo_PP4765 unchara 95.6 0.068 1.5E-06 48.7 8.4 58 43-108 82-140 (376)
63 TIGR01377 soxA_mon sarcosine o 95.3 0.069 1.5E-06 48.7 7.8 56 46-108 144-199 (380)
64 PRK06847 hypothetical protein; 95.3 0.067 1.5E-06 48.7 7.7 57 47-109 107-163 (375)
65 PRK07236 hypothetical protein; 95.2 0.076 1.6E-06 48.7 7.6 56 45-108 98-153 (386)
66 PRK08243 4-hydroxybenzoate 3-m 95.2 2.6 5.6E-05 38.7 17.7 58 47-110 103-164 (392)
67 TIGR00275 flavoprotein, HI0933 95.1 0.14 3.1E-06 47.2 9.3 58 44-108 102-159 (400)
68 PRK06617 2-octaprenyl-6-methox 95.1 2.6 5.6E-05 38.4 20.5 58 46-109 103-160 (374)
69 PTZ00383 malate:quinone oxidor 95.0 0.088 1.9E-06 50.0 7.6 58 46-110 210-274 (497)
70 TIGR03219 salicylate_mono sali 95.0 0.075 1.6E-06 49.2 7.1 55 47-109 105-159 (414)
71 PRK11259 solA N-methyltryptoph 95.0 0.093 2E-06 47.8 7.6 56 47-109 149-204 (376)
72 TIGR03329 Phn_aa_oxid putative 94.9 0.078 1.7E-06 49.9 7.1 55 46-108 182-236 (460)
73 PRK07588 hypothetical protein; 94.8 0.097 2.1E-06 48.1 7.3 56 47-109 103-158 (391)
74 PRK00711 D-amino acid dehydrog 94.8 0.11 2.3E-06 48.2 7.5 57 46-109 200-257 (416)
75 PRK05714 2-octaprenyl-3-methyl 94.8 0.12 2.6E-06 47.6 7.9 58 46-109 111-168 (405)
76 TIGR03378 glycerol3P_GlpB glyc 94.5 0.15 3.1E-06 47.2 7.4 55 48-108 264-321 (419)
77 PRK06834 hypothetical protein; 94.2 0.2 4.2E-06 47.7 7.9 57 47-109 100-156 (488)
78 PRK12409 D-amino acid dehydrog 94.2 0.16 3.5E-06 46.9 7.2 57 47-109 197-258 (410)
79 PRK05868 hypothetical protein; 94.2 0.18 3.8E-06 46.1 7.3 55 48-109 106-160 (372)
80 PRK13339 malate:quinone oxidor 94.1 0.21 4.5E-06 47.4 7.8 59 46-109 183-247 (497)
81 PRK05257 malate:quinone oxidor 94.0 0.19 4.1E-06 47.8 7.3 58 46-109 182-246 (494)
82 PRK07190 hypothetical protein; 93.8 0.25 5.4E-06 46.9 7.8 58 46-109 108-165 (487)
83 PRK06753 hypothetical protein; 93.8 0.22 4.7E-06 45.3 7.2 55 47-109 98-152 (373)
84 PRK06116 glutathione reductase 93.8 0.25 5.5E-06 46.3 7.7 54 48-107 209-263 (450)
85 PRK04965 NADH:flavorubredoxin 93.7 0.28 6.1E-06 44.8 7.7 53 49-107 185-237 (377)
86 PF06039 Mqo: Malate:quinone o 93.7 0.26 5.7E-06 45.6 7.3 97 6-111 137-246 (488)
87 PRK05249 soluble pyridine nucl 93.6 0.29 6.3E-06 46.0 7.8 56 47-108 216-271 (461)
88 TIGR02485 CobZ_N-term precorri 93.5 0.34 7.4E-06 45.2 8.1 59 43-107 119-181 (432)
89 PRK08163 salicylate hydroxylas 93.5 0.28 6E-06 45.0 7.4 59 46-109 108-166 (396)
90 TIGR01320 mal_quin_oxido malat 93.4 0.29 6.2E-06 46.4 7.4 58 46-109 177-240 (483)
91 PRK01747 mnmC bifunctional tRN 93.3 0.26 5.6E-06 48.7 7.3 56 47-109 408-463 (662)
92 TIGR01292 TRX_reduct thioredox 93.2 0.33 7.1E-06 42.5 7.2 55 47-108 57-111 (300)
93 TIGR01424 gluta_reduc_2 glutat 93.2 0.36 7.9E-06 45.2 7.8 55 47-107 207-261 (446)
94 PRK06416 dihydrolipoamide dehy 93.1 0.32 6.9E-06 45.8 7.3 55 48-108 214-271 (462)
95 PRK08013 oxidoreductase; Provi 93.0 0.39 8.5E-06 44.3 7.7 58 47-109 111-168 (400)
96 PRK05329 anaerobic glycerol-3- 93.0 0.38 8.3E-06 44.7 7.5 57 44-107 257-316 (422)
97 PLN02507 glutathione reductase 93.0 0.41 8.8E-06 45.6 7.9 56 47-108 244-299 (499)
98 PF00070 Pyr_redox: Pyridine n 92.9 0.22 4.8E-06 34.4 4.6 41 47-93 40-80 (80)
99 PRK06185 hypothetical protein; 92.9 7.4 0.00016 35.7 19.9 58 47-109 108-169 (407)
100 PRK09897 hypothetical protein; 92.9 0.37 8E-06 46.2 7.4 55 47-107 107-164 (534)
101 TIGR01350 lipoamide_DH dihydro 92.6 0.47 1E-05 44.6 7.6 56 47-108 211-268 (461)
102 TIGR00031 UDP-GALP_mutase UDP- 92.6 0.22 4.8E-06 45.5 5.2 87 10-111 157-249 (377)
103 PRK07845 flavoprotein disulfid 92.5 0.52 1.1E-05 44.5 7.8 54 48-107 219-272 (466)
104 TIGR03140 AhpF alkyl hydropero 92.3 0.51 1.1E-05 45.2 7.6 57 46-108 266-322 (515)
105 PRK09754 phenylpropionate diox 92.2 0.59 1.3E-05 43.1 7.6 52 49-107 188-239 (396)
106 PLN02172 flavin-containing mon 92.2 0.51 1.1E-05 44.5 7.3 57 46-108 110-172 (461)
107 PRK15317 alkyl hydroperoxide r 92.2 0.57 1.2E-05 44.9 7.7 56 47-108 266-321 (517)
108 TIGR02032 GG-red-SF geranylger 92.1 0.59 1.3E-05 40.6 7.3 56 47-108 91-147 (295)
109 PRK06996 hypothetical protein; 92.0 0.54 1.2E-05 43.3 7.2 55 46-106 114-171 (398)
110 PRK06184 hypothetical protein; 92.0 0.53 1.2E-05 44.8 7.3 56 48-109 110-168 (502)
111 PRK07846 mycothione reductase; 91.9 0.67 1.4E-05 43.6 7.7 42 67-108 220-261 (451)
112 PF00996 GDI: GDP dissociation 91.9 0.73 1.6E-05 43.0 7.7 67 30-104 216-284 (438)
113 PLN02463 lycopene beta cyclase 91.7 0.65 1.4E-05 43.6 7.4 55 47-108 114-168 (447)
114 PRK07045 putative monooxygenas 91.7 0.65 1.4E-05 42.5 7.4 58 47-109 106-165 (388)
115 PRK12266 glpD glycerol-3-phosp 91.6 0.6 1.3E-05 44.6 7.2 57 47-109 155-216 (508)
116 PRK13369 glycerol-3-phosphate 91.5 0.63 1.4E-05 44.4 7.2 57 47-109 155-215 (502)
117 TIGR03452 mycothione_red mycot 91.2 0.94 2E-05 42.6 8.0 41 67-107 223-263 (452)
118 KOG2820 FAD-dependent oxidored 91.1 0.71 1.5E-05 41.0 6.4 59 47-111 153-214 (399)
119 PLN02927 antheraxanthin epoxid 91.0 0.81 1.7E-05 45.0 7.4 56 46-109 193-248 (668)
120 COG1249 Lpd Pyruvate/2-oxoglut 90.9 0.83 1.8E-05 42.9 7.1 54 48-107 215-270 (454)
121 TIGR03364 HpnW_proposed FAD de 90.7 0.69 1.5E-05 41.9 6.4 54 46-109 144-197 (365)
122 PRK08010 pyridine nucleotide-d 90.6 1.1 2.3E-05 42.0 7.7 54 47-107 199-252 (441)
123 PRK08274 tricarballylate dehyd 90.6 0.87 1.9E-05 42.9 7.1 59 43-107 127-190 (466)
124 PF00890 FAD_binding_2: FAD bi 90.6 0.68 1.5E-05 42.8 6.3 59 45-109 139-203 (417)
125 PRK14727 putative mercuric red 90.5 1.1 2.4E-05 42.5 7.7 54 48-108 229-282 (479)
126 PTZ00052 thioredoxin reductase 90.4 1.2 2.5E-05 42.6 7.9 54 49-108 224-277 (499)
127 TIGR01373 soxB sarcosine oxida 90.3 1.2 2.5E-05 41.1 7.6 55 47-108 183-239 (407)
128 TIGR01421 gluta_reduc_1 glutat 90.2 1.2 2.6E-05 41.9 7.7 55 48-108 208-264 (450)
129 TIGR01813 flavo_cyto_c flavocy 90.2 1.1 2.4E-05 41.9 7.4 56 47-108 130-191 (439)
130 PRK06134 putative FAD-binding 90.1 1.1 2.4E-05 43.5 7.6 56 47-108 217-277 (581)
131 TIGR01423 trypano_reduc trypan 90.1 1.3 2.7E-05 42.2 7.7 55 47-107 231-286 (486)
132 TIGR03377 glycerol3P_GlpA glyc 89.9 1 2.2E-05 43.1 7.1 58 46-109 127-190 (516)
133 PRK06327 dihydrolipoamide dehy 89.8 1.1 2.5E-05 42.3 7.3 55 47-107 224-282 (475)
134 PRK06475 salicylate hydroxylas 89.8 1.3 2.8E-05 40.9 7.4 60 46-110 106-168 (400)
135 PRK07818 dihydrolipoamide dehy 89.3 1.3 2.9E-05 41.7 7.3 55 47-107 213-271 (466)
136 PRK14694 putative mercuric red 89.0 1.7 3.7E-05 41.0 7.7 55 47-108 218-272 (468)
137 TIGR01790 carotene-cycl lycope 88.9 1.6 3.5E-05 39.9 7.4 57 46-109 84-141 (388)
138 PRK11101 glpA sn-glycerol-3-ph 88.9 1.4 3.1E-05 42.5 7.2 57 47-109 149-211 (546)
139 TIGR02374 nitri_red_nirB nitri 88.7 1.5 3.3E-05 44.3 7.5 43 66-108 195-237 (785)
140 PRK06481 fumarate reductase fl 88.6 1.8 3.9E-05 41.4 7.7 55 47-107 190-249 (506)
141 PRK06370 mercuric reductase; V 88.4 1.9 4.1E-05 40.6 7.7 53 49-107 214-269 (463)
142 PRK07251 pyridine nucleotide-d 88.4 2 4.3E-05 40.2 7.7 53 48-107 199-251 (438)
143 PRK12845 3-ketosteroid-delta-1 87.9 2.1 4.6E-05 41.5 7.7 59 43-108 214-277 (564)
144 PRK09564 coenzyme A disulfide 87.8 2.1 4.6E-05 40.0 7.5 53 48-107 192-244 (444)
145 PTZ00318 NADH dehydrogenase-li 87.8 1.9 4E-05 40.2 7.1 50 48-107 229-278 (424)
146 PRK06183 mhpA 3-(3-hydroxyphen 87.7 1.8 3.8E-05 41.7 7.1 57 49-110 115-175 (538)
147 PRK08244 hypothetical protein; 87.7 1.8 4E-05 41.1 7.1 55 48-108 101-158 (493)
148 PRK13977 myosin-cross-reactive 87.5 0.87 1.9E-05 43.8 4.7 95 7-108 181-292 (576)
149 TIGR01438 TGR thioredoxin and 87.0 2.6 5.6E-05 40.1 7.6 54 48-107 221-277 (484)
150 TIGR03169 Nterm_to_SelD pyridi 87.0 1.9 4.2E-05 39.0 6.6 49 49-107 193-241 (364)
151 PRK12842 putative succinate de 87.0 2.4 5.2E-05 41.2 7.5 56 47-108 214-274 (574)
152 PRK13748 putative mercuric red 86.8 2.6 5.6E-05 40.8 7.7 55 47-108 310-364 (561)
153 PF00743 FMO-like: Flavin-bind 86.8 2 4.3E-05 41.3 6.8 63 46-112 83-153 (531)
154 PRK14989 nitrite reductase sub 86.7 2.5 5.4E-05 43.1 7.7 52 51-108 191-244 (847)
155 TIGR03385 CoA_CoA_reduc CoA-di 86.6 2.4 5.3E-05 39.4 7.2 52 49-108 181-232 (427)
156 TIGR02053 MerA mercuric reduct 86.4 2.8 6E-05 39.5 7.5 54 48-107 208-264 (463)
157 PRK11445 putative oxidoreducta 86.3 3.2 6.9E-05 37.5 7.6 43 67-109 112-157 (351)
158 PRK06115 dihydrolipoamide dehy 86.2 3 6.4E-05 39.4 7.6 55 48-108 216-275 (466)
159 PRK06912 acoL dihydrolipoamide 85.6 3.7 8E-05 38.6 7.9 53 48-107 212-266 (458)
160 PF01494 FAD_binding_3: FAD bi 85.5 1.7 3.7E-05 38.6 5.4 58 46-109 110-172 (356)
161 PLN02697 lycopene epsilon cycl 85.3 3.1 6.8E-05 39.9 7.2 56 47-109 192-248 (529)
162 COG0665 DadA Glycine/D-amino a 85.2 3.2 6.8E-05 37.8 7.1 56 47-109 156-212 (387)
163 PRK06126 hypothetical protein; 85.1 2.7 5.9E-05 40.5 6.9 57 48-109 127-188 (545)
164 PRK07121 hypothetical protein; 84.8 3.9 8.6E-05 38.8 7.8 58 45-108 175-238 (492)
165 PRK05976 dihydrolipoamide dehy 84.8 4 8.7E-05 38.5 7.8 55 48-108 222-280 (472)
166 COG0492 TrxB Thioredoxin reduc 84.7 3 6.5E-05 37.0 6.4 55 47-109 61-115 (305)
167 COG1252 Ndh NADH dehydrogenase 84.7 2.6 5.6E-05 38.8 6.1 53 46-108 208-261 (405)
168 PRK06175 L-aspartate oxidase; 84.2 3.9 8.4E-05 38.2 7.3 56 47-107 128-187 (433)
169 PRK13512 coenzyme A disulfide 84.0 3.7 8E-05 38.4 7.1 50 48-107 190-239 (438)
170 PRK07538 hypothetical protein; 84.0 3.4 7.3E-05 38.2 6.8 58 47-109 102-165 (413)
171 KOG1439 RAB proteins geranylge 83.7 3.7 8E-05 37.5 6.4 65 32-103 218-283 (440)
172 PRK12843 putative FAD-binding 83.3 4.1 8.8E-05 39.7 7.2 56 47-108 221-281 (578)
173 PF01134 GIDA: Glucose inhibit 82.7 5.7 0.00012 36.5 7.5 40 67-107 110-150 (392)
174 PRK12844 3-ketosteroid-delta-1 81.4 5 0.00011 38.9 7.0 57 47-109 208-269 (557)
175 KOG2844 Dimethylglycine dehydr 80.8 3.3 7.2E-05 40.3 5.3 66 37-109 175-243 (856)
176 PRK05945 sdhA succinate dehydr 80.5 6.4 0.00014 38.3 7.5 56 47-108 135-196 (575)
177 TIGR01816 sdhA_forward succina 80.3 6.4 0.00014 38.2 7.4 56 47-108 119-180 (565)
178 TIGR03169 Nterm_to_SelD pyridi 80.2 3.1 6.7E-05 37.7 5.0 41 66-109 67-107 (364)
179 PRK08401 L-aspartate oxidase; 80.0 5.8 0.00013 37.4 6.9 55 47-109 120-175 (466)
180 TIGR01812 sdhA_frdA_Gneg succi 79.7 6.7 0.00015 38.0 7.3 55 48-108 130-190 (566)
181 PLN02464 glycerol-3-phosphate 79.7 7.7 0.00017 38.2 7.7 57 47-109 232-296 (627)
182 PRK09564 coenzyme A disulfide 79.7 4.2 9E-05 38.0 5.8 43 66-108 69-114 (444)
183 PRK04176 ribulose-1,5-biphosph 79.6 7.1 0.00015 33.7 6.7 56 47-108 104-172 (257)
184 PTZ00058 glutathione reductase 79.5 8 0.00017 37.5 7.7 54 48-107 279-334 (561)
185 TIGR02360 pbenz_hydroxyl 4-hyd 79.5 6.2 0.00013 36.2 6.7 59 45-109 101-163 (390)
186 PRK12839 hypothetical protein; 78.9 8.1 0.00018 37.6 7.6 56 47-108 214-275 (572)
187 TIGR03385 CoA_CoA_reduc CoA-di 78.0 5 0.00011 37.3 5.8 42 66-107 57-101 (427)
188 PRK08132 FAD-dependent oxidore 77.9 8.7 0.00019 37.1 7.5 56 49-109 127-185 (547)
189 PRK06467 dihydrolipoamide dehy 77.9 8.6 0.00019 36.4 7.3 41 68-108 229-273 (471)
190 KOG1346 Programmed cell death 77.6 2.8 6.1E-05 38.5 3.7 59 43-107 384-447 (659)
191 COG0578 GlpA Glycerol-3-phosph 77.3 45 0.00098 32.1 11.7 57 48-110 165-226 (532)
192 PRK07573 sdhA succinate dehydr 77.1 8.7 0.00019 37.9 7.3 53 50-108 173-231 (640)
193 PRK12835 3-ketosteroid-delta-1 76.7 10 0.00022 37.1 7.5 58 46-109 212-275 (584)
194 PRK07804 L-aspartate oxidase; 76.5 8.5 0.00018 37.1 6.9 56 47-108 144-209 (541)
195 TIGR01789 lycopene_cycl lycope 76.5 7.8 0.00017 35.4 6.4 49 47-108 89-137 (370)
196 COG0644 FixC Dehydrogenases (f 76.1 8.6 0.00019 35.4 6.7 55 48-108 96-151 (396)
197 PRK08626 fumarate reductase fl 76.0 12 0.00027 37.0 8.0 59 44-108 155-219 (657)
198 PLN02546 glutathione reductase 75.8 12 0.00025 36.4 7.7 54 49-108 295-349 (558)
199 TIGR00551 nadB L-aspartate oxi 75.5 8.6 0.00019 36.5 6.7 58 47-109 128-189 (488)
200 PRK06263 sdhA succinate dehydr 75.5 8.9 0.00019 37.0 6.8 56 47-108 134-196 (543)
201 PRK04965 NADH:flavorubredoxin 75.4 8.2 0.00018 35.2 6.3 40 66-108 71-110 (377)
202 PF13434 K_oxygenase: L-lysine 75.0 5.9 0.00013 35.8 5.1 54 47-106 95-156 (341)
203 KOG1336 Monodehydroascorbate/f 74.9 7.7 0.00017 36.2 5.7 44 67-110 269-314 (478)
204 TIGR02374 nitri_red_nirB nitri 74.6 5.3 0.00012 40.4 5.2 41 66-108 67-107 (785)
205 PRK07843 3-ketosteroid-delta-1 74.5 12 0.00027 36.2 7.5 56 47-108 208-268 (557)
206 PRK09754 phenylpropionate diox 74.2 6.6 0.00014 36.1 5.4 40 67-108 72-111 (396)
207 TIGR00292 thiazole biosynthesi 73.7 18 0.00039 31.1 7.6 56 47-108 100-169 (254)
208 PRK06452 sdhA succinate dehydr 73.5 11 0.00024 36.6 6.9 57 47-109 136-198 (566)
209 PRK06292 dihydrolipoamide dehy 73.5 14 0.00031 34.6 7.6 53 48-107 211-266 (460)
210 COG0446 HcaD Uncharacterized N 73.4 12 0.00025 34.1 6.9 56 47-108 178-236 (415)
211 PRK08275 putative oxidoreducta 73.1 13 0.00029 35.9 7.4 55 48-108 138-199 (554)
212 PRK10262 thioredoxin reductase 73.0 13 0.00028 33.0 6.8 53 49-107 187-246 (321)
213 PRK12810 gltD glutamate syntha 73.0 5.1 0.00011 37.9 4.4 42 258-301 426-467 (471)
214 PRK10262 thioredoxin reductase 73.0 15 0.00033 32.5 7.3 54 47-108 63-116 (321)
215 PRK07512 L-aspartate oxidase; 72.6 9.2 0.0002 36.6 6.1 57 47-108 136-196 (513)
216 PRK12831 putative oxidoreducta 72.5 4.9 0.00011 37.9 4.2 41 258-300 422-462 (464)
217 PRK05675 sdhA succinate dehydr 72.4 14 0.00031 35.9 7.4 57 47-109 126-189 (570)
218 KOG1335 Dihydrolipoamide dehyd 72.4 13 0.00029 33.9 6.5 43 66-108 265-313 (506)
219 KOG0404 Thioredoxin reductase 71.9 8.5 0.00018 32.5 4.8 54 48-109 71-124 (322)
220 PRK08071 L-aspartate oxidase; 71.7 11 0.00025 36.0 6.5 55 47-108 130-189 (510)
221 PF13434 K_oxygenase: L-lysine 71.5 4.9 0.00011 36.3 3.7 41 67-107 293-339 (341)
222 PRK06069 sdhA succinate dehydr 71.4 14 0.00031 35.9 7.2 57 47-108 137-199 (577)
223 PRK09231 fumarate reductase fl 71.3 15 0.00033 35.8 7.3 56 48-108 134-195 (582)
224 PRK12769 putative oxidoreducta 71.0 5.5 0.00012 39.4 4.3 41 258-300 613-653 (654)
225 PRK08205 sdhA succinate dehydr 70.9 15 0.00033 35.8 7.3 57 47-109 140-206 (583)
226 PRK09078 sdhA succinate dehydr 70.9 14 0.00031 36.1 7.0 55 48-108 150-211 (598)
227 PRK13512 coenzyme A disulfide 70.6 8.8 0.00019 35.9 5.4 42 67-108 72-116 (438)
228 PRK11749 dihydropyrimidine deh 70.4 6.1 0.00013 37.1 4.3 42 259-302 414-455 (457)
229 PRK05192 tRNA uridine 5-carbox 68.9 20 0.00043 35.1 7.4 54 49-108 102-156 (618)
230 COG1251 NirB NAD(P)H-nitrite r 68.7 17 0.00036 36.1 6.8 84 18-110 31-114 (793)
231 PRK06854 adenylylsulfate reduc 68.6 19 0.00041 35.3 7.4 56 48-108 133-194 (608)
232 PRK12809 putative oxidoreducta 68.2 7.1 0.00015 38.5 4.4 41 258-300 596-636 (639)
233 KOG1399 Flavin-containing mono 68.2 13 0.00029 34.8 5.9 60 46-109 89-153 (448)
234 TIGR01316 gltA glutamate synth 68.2 6.1 0.00013 37.1 3.7 39 258-298 411-449 (449)
235 PTZ00139 Succinate dehydrogena 68.1 20 0.00042 35.3 7.3 56 47-108 166-228 (617)
236 TIGR01292 TRX_reduct thioredox 68.0 19 0.00042 31.1 6.7 41 67-107 191-236 (300)
237 TIGR03143 AhpF_homolog putativ 67.4 19 0.00042 34.8 7.1 54 47-108 60-113 (555)
238 PRK07803 sdhA succinate dehydr 67.3 18 0.0004 35.6 7.0 61 47-107 138-211 (626)
239 PRK08958 sdhA succinate dehydr 67.0 22 0.00047 34.8 7.4 57 47-109 143-206 (588)
240 TIGR02023 BchP-ChlP geranylger 66.7 18 0.00038 33.1 6.5 54 48-108 93-154 (388)
241 PF04820 Trp_halogenase: Trypt 66.3 25 0.00054 33.2 7.4 58 42-109 152-211 (454)
242 PRK14989 nitrite reductase sub 66.2 11 0.00023 38.7 5.2 41 66-108 72-112 (847)
243 PRK12837 3-ketosteroid-delta-1 65.5 29 0.00062 33.3 7.8 56 48-108 174-234 (513)
244 TIGR01176 fum_red_Fp fumarate 65.1 25 0.00054 34.3 7.4 57 47-108 132-194 (580)
245 TIGR01318 gltD_gamma_fam gluta 64.9 9.4 0.0002 36.1 4.4 40 258-299 427-466 (467)
246 COG3486 IucD Lysine/ornithine 64.4 13 0.00027 34.2 4.8 66 43-108 267-339 (436)
247 KOG1346 Programmed cell death 63.9 10 0.00022 35.0 4.1 40 67-108 271-310 (659)
248 PRK12770 putative glutamate sy 63.5 11 0.00025 33.9 4.5 38 260-299 313-350 (352)
249 PF07992 Pyr_redox_2: Pyridine 63.2 12 0.00026 30.2 4.3 42 67-108 72-121 (201)
250 TIGR01811 sdhA_Bsu succinate d 63.0 30 0.00066 33.9 7.6 59 48-108 130-195 (603)
251 PRK12834 putative FAD-binding 62.3 31 0.00068 33.3 7.5 58 48-108 149-226 (549)
252 TIGR01317 GOGAT_sm_gam glutama 62.2 10 0.00022 36.1 4.0 41 258-300 440-480 (485)
253 PRK12771 putative glutamate sy 61.8 10 0.00023 36.7 4.1 40 259-300 406-445 (564)
254 PF00732 GMC_oxred_N: GMC oxid 61.3 28 0.00061 30.3 6.5 43 67-109 207-258 (296)
255 PRK07057 sdhA succinate dehydr 61.0 31 0.00067 33.8 7.2 56 47-108 148-210 (591)
256 PTZ00318 NADH dehydrogenase-li 60.7 25 0.00054 32.7 6.3 40 261-300 307-349 (424)
257 PLN00128 Succinate dehydrogena 60.6 31 0.00066 34.1 7.1 56 47-108 187-249 (635)
258 PRK12775 putative trifunctiona 60.0 13 0.00027 38.9 4.5 41 258-300 716-756 (1006)
259 PRK12814 putative NADPH-depend 60.0 12 0.00026 37.0 4.3 41 258-300 462-502 (652)
260 KOG2404 Fumarate reductase, fl 59.9 17 0.00037 32.5 4.6 44 67-110 159-207 (477)
261 COG1251 NirB NAD(P)H-nitrite r 59.5 9.6 0.00021 37.7 3.3 42 66-107 200-241 (793)
262 PTZ00153 lipoamide dehydrogena 59.3 40 0.00087 33.5 7.7 43 66-108 367-426 (659)
263 PRK13984 putative oxidoreducta 59.0 12 0.00026 36.6 4.0 40 258-300 564-603 (604)
264 PRK08294 phenol 2-monooxygenas 58.9 34 0.00073 33.8 7.1 56 48-109 142-210 (634)
265 TIGR03140 AhpF alkyl hydropero 58.2 31 0.00067 33.0 6.6 41 67-107 402-448 (515)
266 PF03275 GLF: UDP-galactopyran 58.0 27 0.00059 28.9 5.3 90 37-164 42-131 (204)
267 PRK07395 L-aspartate oxidase; 57.4 25 0.00054 34.1 5.8 57 47-108 134-196 (553)
268 PRK12778 putative bifunctional 56.8 14 0.0003 37.3 4.2 39 259-299 712-750 (752)
269 COG2072 TrkA Predicted flavopr 56.6 22 0.00048 33.4 5.2 42 67-108 98-143 (443)
270 TIGR03862 flavo_PP4765 unchara 56.1 15 0.00032 33.7 3.8 40 258-297 332-374 (376)
271 KOG2665 Predicted FAD-dependen 55.6 26 0.00057 31.3 5.0 57 46-108 195-256 (453)
272 TIGR00136 gidA glucose-inhibit 54.7 50 0.0011 32.4 7.3 55 49-109 98-154 (617)
273 PRK07845 flavoprotein disulfid 54.5 39 0.00084 31.9 6.5 37 258-296 300-336 (466)
274 PRK12779 putative bifunctional 54.4 15 0.00032 38.2 3.9 40 259-300 589-628 (944)
275 PF12831 FAD_oxidored: FAD dep 52.7 4.6 0.0001 37.7 0.0 61 43-112 89-153 (428)
276 TIGR02028 ChlP geranylgeranyl 52.5 22 0.00048 32.7 4.5 37 263-299 270-309 (398)
277 TIGR02462 pyranose_ox pyranose 52.5 42 0.00092 32.4 6.4 43 67-109 228-279 (544)
278 PRK09078 sdhA succinate dehydr 52.4 20 0.00043 35.2 4.3 40 260-299 383-429 (598)
279 KOG1336 Monodehydroascorbate/f 51.1 26 0.00056 32.9 4.5 41 66-108 140-180 (478)
280 PTZ00306 NADH-dependent fumara 50.9 56 0.0012 34.9 7.6 43 260-302 858-906 (1167)
281 PRK04176 ribulose-1,5-biphosph 50.9 19 0.00041 31.0 3.5 38 263-300 214-256 (257)
282 TIGR01816 sdhA_forward succina 50.6 21 0.00045 34.7 4.1 39 260-298 351-396 (565)
283 PRK12810 gltD glutamate syntha 50.5 45 0.00096 31.5 6.3 42 66-107 342-398 (471)
284 COG3075 GlpB Anaerobic glycero 50.4 32 0.00069 31.0 4.7 54 48-107 259-315 (421)
285 PRK11749 dihydropyrimidine deh 49.7 45 0.00097 31.3 6.2 42 66-107 324-385 (457)
286 TIGR01424 gluta_reduc_2 glutat 49.4 53 0.0012 30.7 6.6 37 258-296 289-325 (446)
287 PLN00128 Succinate dehydrogena 49.3 23 0.0005 35.0 4.2 39 260-298 421-466 (635)
288 TIGR03315 Se_ygfK putative sel 49.2 18 0.00039 37.6 3.6 38 259-298 802-839 (1012)
289 PRK09853 putative selenate red 48.7 20 0.00043 37.3 3.7 39 259-299 804-842 (1019)
290 PLN02815 L-aspartate oxidase 47.6 45 0.00097 32.7 5.9 57 47-108 155-221 (594)
291 PRK06452 sdhA succinate dehydr 46.9 29 0.00063 33.7 4.5 40 260-299 357-404 (566)
292 PRK05976 dihydrolipoamide dehy 46.8 60 0.0013 30.6 6.6 36 258-295 306-341 (472)
293 TIGR01810 betA choline dehydro 46.8 31 0.00068 33.1 4.7 41 67-107 208-253 (532)
294 TIGR01372 soxA sarcosine oxida 46.7 51 0.0011 34.5 6.4 42 66-107 364-409 (985)
295 TIGR00292 thiazole biosynthesi 46.1 24 0.00051 30.4 3.4 37 263-299 213-254 (254)
296 TIGR02023 BchP-ChlP geranylger 44.6 35 0.00075 31.2 4.5 37 263-299 264-303 (388)
297 KOG3851 Sulfide:quinone oxidor 44.6 14 0.00031 32.9 1.8 61 37-108 81-144 (446)
298 PRK08205 sdhA succinate dehydr 44.5 32 0.0007 33.5 4.4 39 260-298 373-418 (583)
299 COG0644 FixC Dehydrogenases (f 44.1 36 0.00079 31.2 4.5 37 263-299 269-308 (396)
300 COG1635 THI4 Ribulose 1,5-bisp 43.6 23 0.00049 29.9 2.7 38 263-300 219-261 (262)
301 PTZ00139 Succinate dehydrogena 43.5 29 0.00062 34.2 3.9 39 260-298 400-445 (617)
302 TIGR03143 AhpF_homolog putativ 43.0 31 0.00067 33.4 4.0 41 259-300 270-310 (555)
303 PRK12770 putative glutamate sy 42.7 73 0.0016 28.7 6.2 42 66-107 223-284 (352)
304 PRK06069 sdhA succinate dehydr 42.4 34 0.00073 33.3 4.2 39 260-298 369-414 (577)
305 PRK08958 sdhA succinate dehydr 40.8 40 0.00086 33.0 4.4 39 260-298 378-423 (588)
306 COG2081 Predicted flavoprotein 40.6 29 0.00064 31.8 3.2 39 260-298 366-407 (408)
307 PRK15458 tagatose 6-phosphate 40.4 31 0.00066 31.9 3.3 55 240-296 56-114 (426)
308 PRK15052 D-tagatose-1,6-bispho 40.3 32 0.00068 31.8 3.3 55 240-296 53-111 (421)
309 COG1252 Ndh NADH dehydrogenase 40.0 43 0.00092 31.1 4.2 44 257-300 285-333 (405)
310 TIGR01421 gluta_reduc_1 glutat 39.9 32 0.0007 32.3 3.5 37 258-296 291-327 (450)
311 PF03486 HI0933_like: HI0933-l 39.6 29 0.00063 32.2 3.1 36 257-292 369-408 (409)
312 PRK05675 sdhA succinate dehydr 39.2 45 0.00097 32.5 4.5 39 260-298 360-405 (570)
313 COG0445 GidA Flavin-dependent 39.1 34 0.00073 32.9 3.4 36 74-109 121-158 (621)
314 PRK06116 glutathione reductase 38.7 34 0.00074 32.0 3.5 37 258-296 291-327 (450)
315 PLN00093 geranylgeranyl diphos 38.7 45 0.00097 31.4 4.3 37 263-299 309-348 (450)
316 PRK09231 fumarate reductase fl 38.6 43 0.00094 32.7 4.3 41 259-299 368-415 (582)
317 TIGR01812 sdhA_frdA_Gneg succi 38.1 46 0.001 32.3 4.4 40 260-299 357-403 (566)
318 PRK14727 putative mercuric red 38.0 31 0.00067 32.7 3.1 37 258-296 309-345 (479)
319 PRK09077 L-aspartate oxidase; 37.8 1.1E+02 0.0023 29.5 6.8 56 48-108 139-206 (536)
320 COG4635 HemG Flavodoxin [Energ 37.8 62 0.0013 25.8 4.1 80 43-147 11-94 (175)
321 PRK12842 putative succinate de 37.5 52 0.0011 32.0 4.6 42 259-300 521-569 (574)
322 TIGR02810 agaZ_gatZ D-tagatose 36.4 40 0.00087 31.1 3.4 51 240-290 52-108 (420)
323 PLN02985 squalene monooxygenas 36.3 1.4E+02 0.003 28.7 7.2 56 47-108 147-207 (514)
324 COG0029 NadB Aspartate oxidase 35.9 75 0.0016 30.2 5.1 55 48-107 134-194 (518)
325 PF06100 Strep_67kDa_ant: Stre 35.8 1.5E+02 0.0032 28.3 7.0 58 44-107 204-272 (500)
326 PRK07512 L-aspartate oxidase; 35.3 54 0.0012 31.4 4.3 39 260-298 352-397 (513)
327 TIGR02485 CobZ_N-term precorri 35.0 51 0.0011 30.7 4.0 39 259-297 384-429 (432)
328 PLN02661 Putative thiazole syn 34.7 46 0.001 30.2 3.5 38 263-300 287-329 (357)
329 PLN02661 Putative thiazole syn 34.6 1.6E+02 0.0036 26.8 6.9 56 47-107 172-242 (357)
330 PRK08274 tricarballylate dehyd 34.3 50 0.0011 31.0 3.9 42 260-301 416-464 (466)
331 PRK05945 sdhA succinate dehydr 34.1 58 0.0012 31.7 4.3 39 260-298 368-413 (575)
332 PRK02106 choline dehydrogenase 34.1 87 0.0019 30.3 5.5 42 67-108 215-261 (560)
333 PLN00093 geranylgeranyl diphos 34.0 1.6E+02 0.0035 27.7 7.1 54 48-108 133-198 (450)
334 PF09465 LBR_tudor: Lamin-B re 33.7 1E+02 0.0023 19.6 3.9 30 67-96 18-47 (55)
335 PRK12844 3-ketosteroid-delta-1 33.6 47 0.001 32.2 3.7 41 259-299 504-551 (557)
336 PF01134 GIDA: Glucose inhibit 33.4 64 0.0014 29.8 4.2 41 257-300 349-390 (392)
337 PRK15317 alkyl hydroperoxide r 33.4 41 0.0009 32.2 3.2 42 258-300 472-513 (517)
338 TIGR01423 trypano_reduc trypan 33.0 48 0.001 31.6 3.5 37 258-296 314-350 (486)
339 COG1206 Gid NAD(FAD)-utilizing 32.9 55 0.0012 29.5 3.5 30 263-294 335-367 (439)
340 PRK09077 L-aspartate oxidase; 32.5 59 0.0013 31.3 4.1 39 260-298 364-409 (536)
341 PRK14694 putative mercuric red 32.3 45 0.00097 31.4 3.2 37 258-296 298-334 (468)
342 TIGR01316 gltA glutamate synth 32.3 1.4E+02 0.003 28.0 6.5 42 66-107 322-385 (449)
343 PF08013 Tagatose_6_P_K: Tagat 32.1 33 0.00072 31.7 2.1 58 238-297 54-115 (424)
344 PRK05249 soluble pyridine nucl 31.7 47 0.001 31.2 3.2 37 258-296 298-334 (461)
345 PRK12835 3-ketosteroid-delta-1 31.6 67 0.0014 31.4 4.3 42 259-300 524-572 (584)
346 PRK13748 putative mercuric red 31.6 46 0.001 32.1 3.2 37 258-296 391-427 (561)
347 COG3634 AhpF Alkyl hydroperoxi 31.4 82 0.0018 28.7 4.4 57 48-110 267-326 (520)
348 PRK07843 3-ketosteroid-delta-1 31.4 54 0.0012 31.8 3.6 38 259-296 511-555 (557)
349 PRK06175 L-aspartate oxidase; 30.9 68 0.0015 30.0 4.1 39 260-298 342-387 (433)
350 PRK07057 sdhA succinate dehydr 30.5 66 0.0014 31.5 4.1 38 261-298 382-426 (591)
351 PRK06370 mercuric reductase; V 29.7 59 0.0013 30.6 3.5 38 257-296 296-333 (463)
352 PRK08071 L-aspartate oxidase; 29.5 70 0.0015 30.6 4.0 39 259-297 342-387 (510)
353 PRK06467 dihydrolipoamide dehy 29.2 53 0.0012 31.0 3.1 37 258-296 300-336 (471)
354 PRK05329 anaerobic glycerol-3- 29.0 69 0.0015 29.9 3.8 79 213-298 331-420 (422)
355 PRK07818 dihydrolipoamide dehy 28.8 57 0.0012 30.7 3.3 37 258-296 299-335 (466)
356 PRK06292 dihydrolipoamide dehy 28.6 56 0.0012 30.6 3.2 37 258-296 294-330 (460)
357 TIGR00551 nadB L-aspartate oxi 28.6 78 0.0017 30.0 4.2 39 259-297 343-388 (488)
358 PRK06263 sdhA succinate dehydr 28.3 83 0.0018 30.4 4.4 39 259-298 358-403 (543)
359 TIGR01438 TGR thioredoxin and 28.3 66 0.0014 30.6 3.6 38 258-296 306-343 (484)
360 TIGR01372 soxA sarcosine oxida 28.2 63 0.0014 33.8 3.7 36 262-300 438-473 (985)
361 PRK05335 tRNA (uracil-5-)-meth 27.8 75 0.0016 29.8 3.7 40 257-299 324-364 (436)
362 PLN02507 glutathione reductase 27.8 60 0.0013 31.0 3.3 38 257-296 325-362 (499)
363 PRK12845 3-ketosteroid-delta-1 27.7 62 0.0013 31.5 3.4 38 259-296 519-563 (564)
364 PRK08641 sdhA succinate dehydr 27.6 2E+02 0.0043 28.2 6.8 60 48-109 134-200 (589)
365 TIGR01176 fum_red_Fp fumarate 27.6 80 0.0017 30.8 4.1 39 260-298 368-413 (580)
366 PRK06134 putative FAD-binding 27.1 61 0.0013 31.6 3.2 42 259-300 525-573 (581)
367 PRK12834 putative FAD-binding 27.1 71 0.0015 30.9 3.6 38 259-296 501-548 (549)
368 PRK06416 dihydrolipoamide dehy 27.1 62 0.0013 30.4 3.2 37 258-296 297-333 (462)
369 PRK06444 prephenate dehydrogen 26.6 65 0.0014 26.6 2.8 16 97-112 31-46 (197)
370 TIGR02028 ChlP geranylgeranyl 26.2 2.6E+02 0.0056 25.7 7.1 55 47-108 93-159 (398)
371 PRK12814 putative NADPH-depend 25.9 1.8E+02 0.0039 28.9 6.3 41 67-107 375-435 (652)
372 COG0492 TrxB Thioredoxin reduc 25.8 84 0.0018 27.9 3.6 42 258-300 261-302 (305)
373 TIGR02061 aprA adenosine phosp 25.5 2.8E+02 0.006 27.4 7.3 55 48-108 127-190 (614)
374 PLN02852 ferredoxin-NADP+ redu 25.4 87 0.0019 29.9 3.8 40 260-300 384-423 (491)
375 TIGR02053 MerA mercuric reduct 25.0 73 0.0016 29.9 3.3 38 257-296 291-328 (463)
376 PRK09897 hypothetical protein; 24.8 1.7E+02 0.0038 28.3 5.7 44 68-112 405-450 (534)
377 TIGR01350 lipoamide_DH dihydro 24.6 84 0.0018 29.4 3.6 37 259-297 296-332 (461)
378 PRK06327 dihydrolipoamide dehy 24.6 83 0.0018 29.7 3.5 37 258-296 310-346 (475)
379 COG5044 MRS6 RAB proteins gera 24.5 1.1E+02 0.0024 28.0 4.0 65 32-105 215-280 (434)
380 PRK12843 putative FAD-binding 24.1 1.1E+02 0.0024 29.9 4.3 42 259-300 526-574 (578)
381 PRK06481 fumarate reductase fl 23.6 92 0.002 29.8 3.6 40 260-299 459-504 (506)
382 PLN02172 flavin-containing mon 23.5 73 0.0016 30.1 2.9 36 70-108 252-287 (461)
383 PRK06115 dihydrolipoamide dehy 23.5 87 0.0019 29.5 3.4 37 258-296 301-337 (466)
384 COG1249 Lpd Pyruvate/2-oxoglut 23.3 99 0.0021 29.2 3.7 38 257-296 297-334 (454)
385 PRK12839 hypothetical protein; 23.2 1E+02 0.0022 30.0 4.0 39 259-297 522-567 (572)
386 PRK07846 mycothione reductase; 23.2 86 0.0019 29.4 3.3 37 258-296 288-324 (451)
387 PRK12771 putative glutamate sy 22.8 2.5E+02 0.0055 27.2 6.6 42 66-107 318-378 (564)
388 PTZ00306 NADH-dependent fumara 22.8 99 0.0022 33.1 4.0 58 48-108 545-619 (1167)
389 PRK08401 L-aspartate oxidase; 22.4 1.2E+02 0.0025 28.7 4.1 39 259-297 320-365 (466)
390 PRK11445 putative oxidoreducta 22.3 1.1E+02 0.0023 27.6 3.7 36 263-298 264-302 (351)
391 PF10387 DUF2442: Protein of u 22.3 1.3E+02 0.0027 20.4 3.2 21 76-96 1-22 (79)
392 TIGR03452 mycothione_red mycot 22.2 91 0.002 29.3 3.3 37 258-296 291-327 (452)
393 PF07156 Prenylcys_lyase: Pren 22.2 1.3E+02 0.0028 27.6 4.1 36 263-300 315-350 (368)
394 TIGR00275 flavoprotein, HI0933 22.2 76 0.0016 29.3 2.7 36 256-291 360-399 (400)
395 PRK08275 putative oxidoreducta 22.1 1.1E+02 0.0024 29.6 3.9 40 258-298 365-404 (554)
396 PRK13984 putative oxidoreducta 21.9 2.4E+02 0.0052 27.6 6.2 43 66-108 475-537 (604)
397 PTZ00052 thioredoxin reductase 21.9 1.2E+02 0.0025 29.1 3.9 37 259-296 304-340 (499)
398 PRK08641 sdhA succinate dehydr 21.7 1.3E+02 0.0029 29.4 4.4 39 259-298 365-410 (589)
399 TIGR02032 GG-red-SF geranylger 21.7 86 0.0019 26.8 2.9 32 263-294 261-295 (295)
400 PTZ00367 squalene epoxidase; P 21.7 2.6E+02 0.0055 27.3 6.3 33 263-295 337-372 (567)
401 PRK08626 fumarate reductase fl 21.7 1.4E+02 0.003 29.7 4.5 38 261-298 385-429 (657)
402 COG3486 IucD Lysine/ornithine 21.6 93 0.002 28.8 3.0 84 13-107 66-155 (436)
403 PF00743 FMO-like: Flavin-bind 21.6 84 0.0018 30.4 2.9 49 49-109 283-332 (531)
404 PF02772 S-AdoMet_synt_M: S-ad 21.5 75 0.0016 23.9 2.0 51 47-107 27-79 (120)
405 PRK06912 acoL dihydrolipoamide 21.5 90 0.002 29.3 3.1 37 258-296 293-329 (458)
406 PF01494 FAD_binding_3: FAD bi 21.4 1.3E+02 0.0029 26.3 4.1 37 263-299 291-330 (356)
407 PLN02546 glutathione reductase 21.4 91 0.002 30.3 3.2 37 258-296 376-412 (558)
408 PRK07121 hypothetical protein; 21.3 1.2E+02 0.0026 28.8 3.9 39 259-297 446-490 (492)
409 PRK12779 putative bifunctional 20.8 94 0.002 32.4 3.2 48 47-108 356-403 (944)
410 COG2509 Uncharacterized FAD-de 20.6 1.1E+02 0.0023 28.9 3.2 39 259-299 446-484 (486)
411 COG4529 Uncharacterized protei 20.6 2.7E+02 0.0059 26.4 5.8 38 70-107 123-162 (474)
412 PRK06854 adenylylsulfate reduc 20.5 1.6E+02 0.0034 29.0 4.6 42 258-299 391-432 (608)
413 TIGR01318 gltD_gamma_fam gluta 20.1 3.3E+02 0.0071 25.7 6.6 42 66-107 333-396 (467)
No 1
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.8e-44 Score=337.17 Aligned_cols=298 Identities=65% Similarity=1.167 Sum_probs=249.3
Q ss_pred eeeecccccccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec
Q 021822 3 VDYFYNDFEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS 82 (307)
Q Consensus 3 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~ 82 (307)
.+++.+.++++.+++.+|++++.....+..+++.++++.++||+++|+++|++.+.+.-.|+.++.+|++|++|++|+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~ 259 (487)
T PLN02676 180 IDYYNYDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS 259 (487)
T ss_pred HHHHhccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc
Confidence 34566667899999999999876434555677778888767999999999999875321122234689999999999999
Q ss_pred CCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeec
Q 021822 83 KNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAH 162 (307)
Q Consensus 83 ~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~ 162 (307)
+++|.|++.+|+++.||+||+|+|+.+|++..+.|.|+||+.++++++++.++...|+++.|+++||+++.+..++.+.+
T Consensus 260 ~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~ 339 (487)
T PLN02676 260 KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAH 339 (487)
T ss_pred CCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeec
Confidence 99999999999899999999999999998756889999999999999999999999999999999998744444444444
Q ss_pred CCCCceeeeeeccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCc
Q 021822 163 ETRGYFTIWQHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGS 242 (307)
Q Consensus 163 ~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~ 242 (307)
.+.+..++|..++..+++.++|++++.++.+.++..+++++..+.++++|+++| +.+++.|..+..++|..+||+.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~--g~~~~~p~~~~~~~W~~dp~s~Gs 417 (487)
T PLN02676 340 ERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMF--GPNIPEATDILVPRWWSNRFFKGS 417 (487)
T ss_pred cccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHh--CCCCCCcceEEecccCCCCCCCcc
Confidence 333334555444433456678888888888888999999999999999999999 455678899999999999999999
Q ss_pred CCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh-hh
Q 021822 243 YSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH-FC 302 (307)
Q Consensus 243 y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~-~~ 302 (307)
|+.++||......+.+++|.++|||||++++..|+||||||++||+|||++|++.++. -|
T Consensus 418 ys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~~~ 478 (487)
T PLN02676 418 YSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKKKC 478 (487)
T ss_pred cCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhccCcc
Confidence 9988999887777889999999999999999888999999999999999999999887 44
No 2
>PLN02976 amine oxidase
Probab=100.00 E-value=1.5e-38 Score=313.69 Aligned_cols=273 Identities=26% Similarity=0.480 Sum_probs=225.8
Q ss_pred ccccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-------
Q 021822 10 FEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS------- 82 (307)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~------- 82 (307)
+.+|++++++|+..+.....|..|+|.++.+ +|||++|+++|++.+ .|+||++|++|...
T Consensus 901 ~~~aa~L~eVSl~~~~qd~~y~~fgG~~~rI--kGGYqqLIeALAe~L-----------~IrLNtpVtrId~s~~d~~~~ 967 (1713)
T PLN02976 901 YGCAALLKEVSLPYWNQDDVYGGFGGAHCMI--KGGYSNVVESLAEGL-----------DIHLNHVVTDVSYGSKDAGAS 967 (1713)
T ss_pred ccccCCHHHhhhhhhhcccccccCCCceEEe--CCCHHHHHHHHHhhC-----------CeecCCeEEEEEecCCccccc
Confidence 4458999999998765333466777777776 899999999999986 39999999999984
Q ss_pred ---CCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEE
Q 021822 83 ---KNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLL 159 (307)
Q Consensus 83 ---~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~ 159 (307)
+++|.|++.+|+++.||+||+|+|+.+|+...+.|.|+||..+..+|+.+.|+...||++.|+++||+...+ ++.
T Consensus 968 ~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d--~FG 1045 (1713)
T PLN02976 968 GSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVD--YFG 1045 (1713)
T ss_pred ccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCC--ccc
Confidence 357999999998899999999999999985457899999999999999999999999999999999986321 222
Q ss_pred eecC---CCC-ceeeeeeccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCc
Q 021822 160 YAHE---TRG-YFTIWQHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWS 235 (307)
Q Consensus 160 ~~~~---~~~-~~~~~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~ 235 (307)
.... ..+ .+.+|.. ..+.+.++|++|+.|..+..+..++++++.+.+++.|+++|+ +..++.|..+..++|..
T Consensus 1046 ~s~edtdlrG~~~~~wnl--r~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG-~~~iPdPv~~vvTrWss 1122 (1713)
T PLN02976 1046 ATAEETDLRGQCFMFWNV--KKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFG-EALVPDPVASVVTDWGR 1122 (1713)
T ss_pred cccccCCCCceEEEeccC--CCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcC-cccccCcceeEEecCCC
Confidence 1111 112 1223321 123456788889888888888899999999999999999996 44457889999999999
Q ss_pred CCCCCCcCCCCCCCCChhhhhHhhCCCCc-EEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 236 NRLYKGSYSNWPNGYTLHSYHDLQQPFGR-IYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 236 ~~~~~g~y~~~~~g~~~~~~~~~~~p~~~-l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+||+.|+|++..||.....+..+..|.++ |||||++++..|+|||+||+.||.|||++|+..+..
T Consensus 1123 DPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1123 DPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999988999877677888999855 999999999989999999999999999999998854
No 3
>PLN03000 amine oxidase
Probab=100.00 E-value=9.4e-38 Score=300.81 Aligned_cols=275 Identities=28% Similarity=0.484 Sum_probs=221.0
Q ss_pred ccccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEE
Q 021822 10 FEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIIT 89 (307)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~ 89 (307)
+.++.+.+.+|+..+.....+ .+++..+++ +|||++|+++|++.+ +|+++++|++|+..+++|.|+
T Consensus 347 ~~~as~ls~LSl~~wdqd~~~-e~~G~~~~v--~GG~~~LieaLa~~L-----------~I~Ln~~Vt~I~~~~dgV~V~ 412 (881)
T PLN03000 347 YANAGLVSKLSLAFWDQDDPY-DMGGDHCFL--PGGNGRLVQALAENV-----------PILYEKTVQTIRYGSNGVKVI 412 (881)
T ss_pred cccccCHHHHHHHHhhhcccc-cCCCceEEe--CCCHHHHHHHHHhhC-----------CcccCCcEEEEEECCCeEEEE
Confidence 445666777776555311112 345666666 899999999999997 399999999999999999998
Q ss_pred eCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeec-CCCCce
Q 021822 90 TEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAH-ETRGYF 168 (307)
Q Consensus 90 ~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~-~~~~~~ 168 (307)
+.+ +++.||+||+|+|+.+|++..|.|.|+||+.+.++|+++.|+...||++.|+++||..+.+.-..+..+ ...+.+
T Consensus 413 ~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~ 491 (881)
T PLN03000 413 AGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEF 491 (881)
T ss_pred ECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCcee
Confidence 754 489999999999999999655889999999999999999999999999999999998742211111111 112222
Q ss_pred eeeeeccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCC-CCCCCCCceEEecccCcCCCCCCcCCCCC
Q 021822 169 TIWQHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGN-GKQIPEPDTMLIPKWWSNRLYKGSYSNWP 247 (307)
Q Consensus 169 ~~~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~-g~~~~~~~~~~~~~W~~~~~~~g~y~~~~ 247 (307)
..|.++. ...+..+|++|+.|+.+.++..++++++.+.++++|+++|++ +.++++|..+..++|..+||+.|+|+++.
T Consensus 492 ~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~ 570 (881)
T PLN03000 492 FLFYSYA-PVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVA 570 (881)
T ss_pred EEEeCCC-CCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCC
Confidence 2332221 124567888999999999999999999999999999999951 13456888999999999999999999999
Q ss_pred CCCChhhhhHhhCCC--CcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 248 NGYTLHSYHDLQQPF--GRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 248 ~g~~~~~~~~~~~p~--~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
||.....+..+.+|. ++|||||++++..|+|||+||++||+|||.+|++.+..
T Consensus 571 pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 571 VGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred CCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 998877788899985 69999999999888999999999999999999998765
No 4
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=7.7e-37 Score=284.15 Aligned_cols=263 Identities=32% Similarity=0.488 Sum_probs=217.6
Q ss_pred ccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC
Q 021822 12 EAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE 91 (307)
Q Consensus 12 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~ 91 (307)
++.+++++|++.+.. ...+.|.+.++ ++||++|+++|++.+ +|++|++|++|+..+++|.|++.
T Consensus 171 ~~~~~~~ls~~~~~~---~~~~~g~~~~~--~~G~~~l~~~l~~~~-----------~i~~~~~V~~i~~~~~~v~v~~~ 234 (435)
T PLN02268 171 FAADADTISLKSWDQ---EELLEGGHGLM--VRGYDPVINTLAKGL-----------DIRLNHRVTKIVRRYNGVKVTVE 234 (435)
T ss_pred hCCChHhCchhhcCC---ccccCCCceee--cCCHHHHHHHHhccC-----------ceeCCCeeEEEEEcCCcEEEEEC
Confidence 789999999987632 22334445565 799999999998764 59999999999999899999998
Q ss_pred CCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEe-ecCCCCceee
Q 021822 92 DGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLY-AHETRGYFTI 170 (307)
Q Consensus 92 ~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~-~~~~~~~~~~ 170 (307)
+|+++.||+||+|+|+++|++..+.|.|+||+.+.++++++.|+...|+++.|+++||++. .++.. .+.... ...
T Consensus 235 ~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~---~~~g~~~~~~~~-~~~ 310 (435)
T PLN02268 235 DGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV---EFLGVVAPTSYG-CSY 310 (435)
T ss_pred CCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC---ceeeccCCCCCC-ceE
Confidence 9988999999999999999865577889999999999999999999999999999999762 12221 111111 112
Q ss_pred eeeccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCC
Q 021822 171 WQHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGY 250 (307)
Q Consensus 171 ~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~ 250 (307)
+... ...++.++|++++.+..+.++.+++++++.+.++++|++++| . ..+|..+..++|..+||+.|+|+...||.
T Consensus 311 ~~~~-~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~-~--~~~p~~~~~~~W~~dp~~~G~~~~~~~g~ 386 (435)
T PLN02268 311 FLNL-HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLP-D--ATEPVQYLVSRWGSDPNSLGCYSYDLVGK 386 (435)
T ss_pred EEec-ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcC-C--CCCccEEEecccCCCCCCCccCCCCCCCC
Confidence 2222 123566788888888888889999999999999999999996 3 34688889999999999999999888998
Q ss_pred ChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 021822 251 TLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 251 ~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l 298 (307)
....++.+.+|.++|||||++++..++|+||||++||+|||++|++.|
T Consensus 387 ~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 387 PHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 766778899999999999999999889999999999999999999765
No 5
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=8.6e-37 Score=293.19 Aligned_cols=274 Identities=25% Similarity=0.422 Sum_probs=218.7
Q ss_pred cccccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEE
Q 021822 9 DFEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVII 88 (307)
Q Consensus 9 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V 88 (307)
.+.++++.+.+|+..+... ....+++.++++ +|||++|+++|++.+ +|++|++|++|+..+++|.|
T Consensus 322 e~a~~~~~s~LSl~~~~~~-~~~e~~G~~~~i--~GG~~~Li~aLA~~L-----------~IrLnt~V~~I~~~~dGVtV 387 (738)
T PLN02529 322 EYANAGCLSDLSAAYWDQD-DPYEMGGDHCFL--AGGNWRLINALCEGV-----------PIFYGKTVDTIKYGNDGVEV 387 (738)
T ss_pred ceecCCChHHhhhhHhhhc-cccccCCceEEE--CCcHHHHHHHHHhcC-----------CEEcCCceeEEEEcCCeEEE
Confidence 4556777888888777421 112345667776 899999999999876 49999999999999999998
Q ss_pred EeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEee---cCCC
Q 021822 89 TTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYA---HETR 165 (307)
Q Consensus 89 ~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~---~~~~ 165 (307)
++ +++++.||+||+|+|+++|++..+.|.|+||+.+.++++++.|++..||++.|+++||....+ ++... ....
T Consensus 388 ~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~--~fG~l~~~~~~~ 464 (738)
T PLN02529 388 IA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELD--TFGCLNESSNKR 464 (738)
T ss_pred EE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCC--ceEEEeccCCCC
Confidence 76 445799999999999999986557899999999999999999999999999999999976322 22221 1122
Q ss_pred CceeeeeeccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCC-CCCCCCCceEEecccCcCCCCCCcCC
Q 021822 166 GYFTIWQHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGN-GKQIPEPDTMLIPKWWSNRLYKGSYS 244 (307)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~-g~~~~~~~~~~~~~W~~~~~~~g~y~ 244 (307)
+....|.+. ...++.++|++++.++.+.++..++++++.+.++++|+++|++ +..+++|..+..++|..+||+.|+|+
T Consensus 465 g~~~~~~~~-~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS 543 (738)
T PLN02529 465 GEFFLFYGY-HTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYS 543 (738)
T ss_pred ceEEEEecC-CCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcc
Confidence 222222222 1224557888899999899899999999999999999999951 23456788899999999999999999
Q ss_pred CCCCCCChhhhhHhhCCC-CcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 245 NWPNGYTLHSYHDLQQPF-GRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 245 ~~~~g~~~~~~~~~~~p~-~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+..|+.....+..+..|. ++||||||+++..|+|+||||++||+|||++|++.+..
T Consensus 544 ~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 544 HVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred cCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 888776554456777774 89999999999989999999999999999999988754
No 6
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.7e-36 Score=284.22 Aligned_cols=276 Identities=23% Similarity=0.344 Sum_probs=217.4
Q ss_pred cCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCC
Q 021822 13 AEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTED 92 (307)
Q Consensus 13 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~ 92 (307)
.++++++|.+.+.....+..+.+..+.+ +||+++|+++|++.++ +.+|++|++|++|+..+++++|++.+
T Consensus 210 ~~~~~~ls~ls~~~~~~~~~~~g~~~~i--~gG~~~Li~~La~~L~--------~~~I~ln~~V~~I~~~~~~v~V~~~d 279 (539)
T PLN02568 210 YTSADDLSTLDLAAESEYRMFPGEEITI--AKGYLSVIEALASVLP--------PGTIQLGRKVTRIEWQDEPVKLHFAD 279 (539)
T ss_pred ccccccHhhccccccCcceecCCCeEEE--CCcHHHHHHHHHhhCC--------CCEEEeCCeEEEEEEeCCeEEEEEcC
Confidence 3556666666554333445556666655 8999999999999985 46799999999999998999999999
Q ss_pred CcEEEcCEEEEecChhhhccCc----ccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCC--C-Ccce--EEeecC
Q 021822 93 GSVYHANYVIVTVSVGVLQSDL----IGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTG--P-GTEF--LLYAHE 163 (307)
Q Consensus 93 G~~~~ad~VI~a~P~~~l~~~~----i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~--~-~~~~--~~~~~~ 163 (307)
|+++.||+||+|+|+.+|++.. +.|.|+||..+.++|+.+.|+.+.||++.|+++||..+ . .... +++..+
T Consensus 280 G~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~ 359 (539)
T PLN02568 280 GSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRS 359 (539)
T ss_pred CCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeeccc
Confidence 9889999999999999998532 47999999999999999999999999999999988641 1 0111 111211
Q ss_pred CC----Cceeeeee----ccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCC--------------
Q 021822 164 TR----GYFTIWQH----LENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQ-------------- 221 (307)
Q Consensus 164 ~~----~~~~~~~~----~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~-------------- 221 (307)
+. .....|.. +.....+.++|++|+.|+.+.++..++++++.+.+++.|+++|+ ...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g-~~~~~~~~~~~~~~~~~ 438 (539)
T PLN02568 360 DSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLK-RRVAGLGSQSHPLCNGG 438 (539)
T ss_pred chhhhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcC-CcccCcccccccccccc
Confidence 10 00112211 11112356789999999999999999999999999999999995 211
Q ss_pred -------CCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhhCCCC-------------cEEEecccccCCCCcchh
Q 021822 222 -------IPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFG-------------RIYFAGEHTNSTYLGYVD 281 (307)
Q Consensus 222 -------~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~-------------~l~~aGd~~~~~~~g~~e 281 (307)
.+.|..+..++|..+||+.|+|++.+||........+..|++ +|||||++++..|+|+|+
T Consensus 439 ~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~ 518 (539)
T PLN02568 439 ASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTH 518 (539)
T ss_pred cccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHH
Confidence 135788899999999999999998889998766778888864 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021822 282 GAYFSGINTANALIKCLK 299 (307)
Q Consensus 282 gAv~SG~~aA~~il~~l~ 299 (307)
||+.||+|+|++|++.++
T Consensus 519 GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 519 GAYFSGLREANRLLQHYK 536 (539)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998764
No 7
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=2.3e-36 Score=291.35 Aligned_cols=275 Identities=27% Similarity=0.483 Sum_probs=219.0
Q ss_pred ccccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEE
Q 021822 10 FEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIIT 89 (307)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~ 89 (307)
+.++++.+.+|+..+... ....+++..+++ +|||++|+++|++.+ .|++|++|++|...+++|.|
T Consensus 403 ~~~gs~ls~LSl~~w~qd-~~~e~~G~~~~v--~GG~~~Li~aLa~~L-----------~I~ln~~V~~I~~~~dgV~V- 467 (808)
T PLN02328 403 YANASLMSNLSMAYWDQD-DPYEMGGDHCFI--PGGNDTFVRELAKDL-----------PIFYERTVESIRYGVDGVIV- 467 (808)
T ss_pred ccchhhHHHHHhhhhhcc-ccccCCCeEEEE--CCcHHHHHHHHHhhC-----------CcccCCeeEEEEEcCCeEEE-
Confidence 455666777777665321 122345556666 799999999999986 39999999999999888888
Q ss_pred eCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeec-CCCCce
Q 021822 90 TEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAH-ETRGYF 168 (307)
Q Consensus 90 ~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~-~~~~~~ 168 (307)
+.+|+++.||+||+|+|+.+|++..|.|.|+||+.+..+|+++.|+.+.||++.|+++||....+.-.....+ ...+.+
T Consensus 468 ~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~ 547 (808)
T PLN02328 468 YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEF 547 (808)
T ss_pred EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceE
Confidence 4577789999999999999998655789999999999999999999999999999999998632111111111 112222
Q ss_pred eeeeeccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCC-CCCCCCCceEEecccCcCCCCCCcCCCCC
Q 021822 169 TIWQHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGN-GKQIPEPDTMLIPKWWSNRLYKGSYSNWP 247 (307)
Q Consensus 169 ~~~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~-g~~~~~~~~~~~~~W~~~~~~~g~y~~~~ 247 (307)
..|.++.. .++..+|++|+.++.+.++..++++++.+.++++|+++|++ +..+++|.....++|..+||+.|+|++..
T Consensus 548 ~lf~s~s~-~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~ 626 (808)
T PLN02328 548 FLFYSYSS-VSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVA 626 (808)
T ss_pred EEEecCCC-CCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCC
Confidence 22322221 24567888999999999999999999999999999999941 12346788899999999999999999988
Q ss_pred CCCChhhhhHhhCCC--CcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 248 NGYTLHSYHDLQQPF--GRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 248 ~g~~~~~~~~~~~p~--~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+|.....++.+..|. ++|||||++++..++|||+||+.||+|||++|++.++.
T Consensus 627 pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 627 VGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred CCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhh
Confidence 998766678888874 69999999999888999999999999999999998776
No 8
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-34 Score=253.76 Aligned_cols=240 Identities=27% Similarity=0.423 Sum_probs=202.4
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCC
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLP 122 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~ 122 (307)
.|||++|+++.++.+ +..|.++++|++|++.+++|+|++.+..++.+|.||||+|+.+|.+ |.|.|.++
T Consensus 205 ~GGmd~la~Afa~ql---------~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~ 273 (450)
T COG1231 205 LGGMDQLAEAFAKQL---------GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLP 273 (450)
T ss_pred CccHHHHHHHHHHHh---------hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCC
Confidence 499999999999997 6789999999999999999999998855899999999999999998 88999999
Q ss_pred HHHHHHHhhcCCCcceEEEEEcCCCCcCC-C-CCcceEEeecCCCCceeeeeeccccCCCCceEEE-EecchhhHHHhhC
Q 021822 123 LWKKLAINNFDMAIYTKIFMKFPYKFWPT-G-PGTEFLLYAHETRGYFTIWQHLENELPGENMIFV-TVTDEESRRIEQQ 199 (307)
Q Consensus 123 ~~~~~~i~~~~~~~~~kv~l~~~~~~w~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~-~~~~~~a~~~~~~ 199 (307)
+.+++++..++|++.+|+.+.|++|||++ + ++... +.+.. +.-++.+......|..+|.. |..+..+..|..+
T Consensus 274 ~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~--~tD~~--~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~ 349 (450)
T COG1231 274 AEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGES--LTDLG--LGFISYPSAPFADGPGVLLGSYAFGDDALVIDAL 349 (450)
T ss_pred HHHHHHhcCcCcchheeeeeecCchhhhhcccCCceE--eecCC--cceEecCccccCCCceEEEeeeeccccceeEecC
Confidence 99999999999999999999999999998 4 44332 33322 11222222122356778877 4568888889999
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCceE-EecccCcCCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCc
Q 021822 200 SEKKTKAEIMQVLKKMFGNGKQIPEPDTM-LIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLG 278 (307)
Q Consensus 200 ~~e~~~~~~~~~L~~~~p~g~~~~~~~~~-~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g 278 (307)
++++.++.++..++++|| . ....+.+. ...+|..+||+.|+|..+.||+....++.+..|.++|||||++.++.++|
T Consensus 350 ~~~~r~~~vl~~l~~~~g-~-~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~G 427 (450)
T COG1231 350 PEAERRQKVLARLAKLFG-D-EAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGG 427 (450)
T ss_pred CHHHHHHHHHHhHhhhCC-h-hhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccc
Confidence 999999999999999996 3 34445554 88999999999998888999999888999999999999999666665899
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 021822 279 YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 279 ~~egAv~SG~~aA~~il~~l~ 299 (307)
|+|||++||.+||.+|...++
T Consensus 428 w~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 428 WLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred hhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998775
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=250.32 Aligned_cols=289 Identities=27% Similarity=0.452 Sum_probs=228.2
Q ss_pred cccccccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccC--CCCCCCCeeecCCeeEEEEecC-
Q 021822 7 YNDFEEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHN--NNKITDPRLKLKKTVRKINQSK- 83 (307)
Q Consensus 7 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~--~~~~~g~~i~l~~~V~~I~~~~- 83 (307)
.|.++-+.+.+++|+..+.. |.++.|.......+-|+..+.+-|++.+++.. .| +-.+++++++|.+|+-.+
T Consensus 186 e~~~~~~d~l~evs~~~~~e---y~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~--~~~~~~~~~rv~~I~~~~~ 260 (498)
T KOG0685|consen 186 ECSITGADNLSEVSLRALLE---YTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELG--LWKRIHLNTRVENINWKNT 260 (498)
T ss_pred heeeeccCchhhhhhhhccc---eeecCchhhheechhHHHHHHHHHhccCCCcchhcC--chhhhcccccceeeccCCC
Confidence 56777788999999999974 55555544444447899999999999987522 11 235666679999999886
Q ss_pred CeEEEEeCCCcEEEcCEEEEecChhhhccC-cccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeec
Q 021822 84 NKVIITTEDGSVYHANYVIVTVSVGVLQSD-LIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAH 162 (307)
Q Consensus 84 ~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~-~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~ 162 (307)
+.++|++.||+.+.||+||||+++.+|++. ..-|.|+||..+.++|+++.++.+.|++|.|.+|||+.+...-.+.+.+
T Consensus 261 ~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~ 340 (498)
T KOG0685|consen 261 GEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLD 340 (498)
T ss_pred CcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEec
Confidence 569999999999999999999999999872 2358999999999999999999999999999999999854322333444
Q ss_pred CCC----Cceeeee----eccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccC
Q 021822 163 ETR----GYFTIWQ----HLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWW 234 (307)
Q Consensus 163 ~~~----~~~~~~~----~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~ 234 (307)
++. .....|. .+..-...+++|.+++.|+.+..+..+++|++.+.+...|++.++ +..+|.|..+..++|.
T Consensus 341 e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~-n~~iP~p~kilRs~W~ 419 (498)
T KOG0685|consen 341 EDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLK-NPEIPKPKKILRSQWI 419 (498)
T ss_pred CcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcC-CCCCCCchhhhhhccc
Confidence 330 0001221 122222345789999999999999999999999999999999997 6889999999999999
Q ss_pred cCCCCCCcCCCCCCCCChhhhhHhhCCC--------CcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhhh
Q 021822 235 SNRLYKGSYSNWPNGYTLHSYHDLQQPF--------GRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHF 301 (307)
Q Consensus 235 ~~~~~~g~y~~~~~g~~~~~~~~~~~p~--------~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~~ 301 (307)
.+||++|+|++..++........+..|. +.|.|||++++..+..+++||++||.|.|+++++....+
T Consensus 420 snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~ 494 (498)
T KOG0685|consen 420 SNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESS 494 (498)
T ss_pred CCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence 9999999999888886543333333222 479999999999888999999999999999999977653
No 10
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.97 E-value=1.4e-29 Score=234.11 Aligned_cols=247 Identities=26% Similarity=0.451 Sum_probs=194.8
Q ss_pred CCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCc
Q 021822 35 EDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDL 114 (307)
Q Consensus 35 ~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~ 114 (307)
...+... .|++..+...+++.+ |++|++|++|++|+.++++++|.+.+|+++.||+||+|+|++.+.+
T Consensus 201 ~~~~~~~-~g~~~~~~~~~~~~~---------g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~-- 268 (450)
T PF01593_consen 201 FGGLTVG-MGGLSLALALAAEEL---------GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN-- 268 (450)
T ss_dssp SSTEEEE-TTTTHHHHHHHHHHH---------GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--
T ss_pred ccceeec-ccchhHHHHHHHhhc---------CceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--
Confidence 3444554 577777777777765 6699999999999999999999999999999999999999999986
Q ss_pred ccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeecCCCCceeeeeeccccC--CCCceEEEEecchh
Q 021822 115 IGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENEL--PGENMIFVTVTDEE 192 (307)
Q Consensus 115 i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~l~~~~~~~~ 192 (307)
+.+.|.++..+..++++++|.+..+|++.|+.++|..........+.+.......++.. ...+ ++..+++.++.+..
T Consensus 269 i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 347 (450)
T PF01593_consen 269 ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDP-SKFPGRPGGGVLTSYVGGPD 347 (450)
T ss_dssp SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEE-CCTTSCTTSEEEEEEEEHHH
T ss_pred hhhcccccccccccccccccCcceeEEEeeecccccccccccceecccCcccccccccc-ccCcccccCCcceeeeeccc
Confidence 66889999888899999999999999999999999874222222333331121112221 1111 35667777887777
Q ss_pred hHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhhCCC-CcEEEeccc
Q 021822 193 SRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPF-GRIYFAGEH 271 (307)
Q Consensus 193 a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~-~~l~~aGd~ 271 (307)
+..+..++++++.+.++++|++++| ....++|.++..++|.++++..++|+...++.....++.+.+|. ++||||||+
T Consensus 348 ~~~~~~~~~e~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~ 426 (450)
T PF01593_consen 348 APEWDDLSDEEILERVLDDLRKILP-GASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDW 426 (450)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHT-TGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGG
T ss_pred cchhcccchhhhHHHHHHHhhhccc-cccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecc
Confidence 7788899999999999999999997 43455677888999999999999998777776544678899998 699999999
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHH
Q 021822 272 TNSTYLGYVDGAYFSGINTANALI 295 (307)
Q Consensus 272 ~~~~~~g~~egAv~SG~~aA~~il 295 (307)
+++++.|++|||+.||++||++||
T Consensus 427 ~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 427 TSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp GSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhC
Confidence 998777899999999999999997
No 11
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.7e-28 Score=227.90 Aligned_cols=247 Identities=33% Similarity=0.619 Sum_probs=205.7
Q ss_pred ceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecChhhhccCcc
Q 021822 37 SYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSVGVLQSDLI 115 (307)
Q Consensus 37 ~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i 115 (307)
.... .+|+..++.+|+..+ +|+++++|.+|...+++ +.+++.++..+.+|+||+|+|+++|+...|
T Consensus 211 ~~~~--~~G~~~v~~~la~~l-----------~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i 277 (501)
T KOG0029|consen 211 HLLM--KGGYEPVVNSLAEGL-----------DIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLI 277 (501)
T ss_pred hhHh--hCCccHHHhhcCCCc-----------ceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCce
Confidence 3454 799999999999976 59999999999998766 455555665699999999999999998778
Q ss_pred cccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeecCCCCcee--eeeeccccCCCCceEEEEecchhh
Q 021822 116 GFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFT--IWQHLENELPGENMIFVTVTDEES 193 (307)
Q Consensus 116 ~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~l~~~~~~~~a 193 (307)
.|.|+||..+.++|+++.++...||++.|++.||.. +..+++..+....... .+++.. ...+.+.|+.++.++.+
T Consensus 278 ~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~--~~d~fg~~~~~~~~~~~~~f~~~~-~~~~~~~l~~~~~~~~a 354 (501)
T KOG0029|consen 278 EFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQ--DIDFFGIVPETSVLRGLFTFYDCK-PVAGHPVLMSVVVGEAA 354 (501)
T ss_pred eeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCC--CcCeEEEccccccccchhhhhhcC-ccCCCCeEEEEehhhhh
Confidence 999999999999999999999999999999999974 3344444433222222 122221 12344567777778888
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhhCCCCc-EEEecccc
Q 021822 194 RRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGR-IYFAGEHT 272 (307)
Q Consensus 194 ~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~-l~~aGd~~ 272 (307)
+.+..++++++++.++..|+++|+ +..+++|.++.+.+|..++++.|+|++..++.-...+..+..|..+ +||||+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~k~f~-~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t 433 (501)
T KOG0029|consen 355 ERVETLSDSEIVKKAMKLLRKVFG-SEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEAT 433 (501)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhc-cCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhh
Confidence 889999999999999999999997 6778899999999999999999999988777765667888889876 99999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 273 NSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 273 ~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+..|+|+|+||+.||.++|..|+..+..
T Consensus 434 ~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 434 SRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred cccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999885
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.94 E-value=4.2e-25 Score=207.04 Aligned_cols=266 Identities=15% Similarity=0.197 Sum_probs=193.1
Q ss_pred ccccccCcccccccccCCcccc-c-----------------------cccC--CCceeeeCCCCHHHHHHHHHHhhhccC
Q 021822 8 NDFEEAEPTRISSLKNTFPRQL-M-----------------------EDFG--EDSYFVADPRGFETVVHYIANQFLSHN 61 (307)
Q Consensus 8 ~~~~~~~~~~~~s~~~~~~~~~-~-----------------------~~~~--~~~~~~~~~gG~~~l~~~L~~~~~~~~ 61 (307)
+.-.|+.+++++|+..+++... . ..|. .+..+.+.+|||++|+++|++.+.
T Consensus 160 ~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--- 236 (462)
T TIGR00562 160 LSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--- 236 (462)
T ss_pred hcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc---
Confidence 3456888999999886653210 0 0000 112123338999999999999983
Q ss_pred CCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEE
Q 021822 62 NNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIF 141 (307)
Q Consensus 62 ~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~ 141 (307)
.++|++|++|++|+.++++|.|++.+|+++.||+||+|+|++.+.. +.|++++...++++++.|.++.++.
T Consensus 237 -----~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~~~~v~ 307 (462)
T TIGR00562 237 -----LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPPVANVN 307 (462)
T ss_pred -----cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCceEEEE
Confidence 3689999999999999888999888888899999999999999976 4466788888899999999999999
Q ss_pred EEcCCCCcCCCCCcceEEeecCC--C-Cceeeeeec---cccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHH
Q 021822 142 MKFPYKFWPTGPGTEFLLYAHET--R-GYFTIWQHL---ENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKM 215 (307)
Q Consensus 142 l~~~~~~w~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~ 215 (307)
+.|++++|...... +....+.+ . ....+|.+. ...+++..+|++++.+..+.++.+++++++.+.++++|.++
T Consensus 308 l~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~ 386 (462)
T TIGR00562 308 LGFPEGSVDGELEG-FGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKV 386 (462)
T ss_pred EEEchHHcCCCCCc-eEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 99998888653221 21122221 1 122233221 12345667888888776666777899999999999999999
Q ss_pred hCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhh----HhhCCCCcEEEecccccCCCCcchhHHHHHHHHHH
Q 021822 216 FGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYH----DLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTA 291 (307)
Q Consensus 216 ~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~----~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA 291 (307)
+ +... +|....+++|.. +++.+.+|+.. ..+ .+..+.++|++||+++.. ..||+|+.||.++|
T Consensus 387 ~--gi~~-~p~~~~v~rw~~------a~P~~~~g~~~-~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~~~i~sg~~~a 453 (462)
T TIGR00562 387 L--NINN-EPEMLCVTRWHR------AIPQYHVGHDQ-RLKEARELLESAYPGVFLTGNSFEG---VGIPDCIDQGKAAA 453 (462)
T ss_pred h--CCCC-CCcEEEEeEccc------cCCCCCCChHH-HHHHHHHHHHhhCCCEEEeccccCC---CcHHHHHHHHHHHH
Confidence 9 4432 477888899985 45556677632 222 233445799999999764 36999999999999
Q ss_pred HHHHHHHh
Q 021822 292 NALIKCLK 299 (307)
Q Consensus 292 ~~il~~l~ 299 (307)
++|++.+.
T Consensus 454 ~~~~~~~~ 461 (462)
T TIGR00562 454 SDVLTFLF 461 (462)
T ss_pred HHHHHhhc
Confidence 99988763
No 13
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.94 E-value=1.6e-25 Score=206.99 Aligned_cols=258 Identities=13% Similarity=0.128 Sum_probs=177.3
Q ss_pred cccccCcccccccccCCccccccccC----CCceeeeCCCCHHHHHHH-HHHhhhccCCCCCCCCeeecCCeeEEEEecC
Q 021822 9 DFEEAEPTRISSLKNTFPRQLMEDFG----EDSYFVADPRGFETVVHY-IANQFLSHNNNKITDPRLKLKKTVRKINQSK 83 (307)
Q Consensus 9 ~~~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~gG~~~l~~~-L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~ 83 (307)
...++.+|+++|+..+.+... ..+. ....+.. +||+++++.. |++.+.+ .|++|++|++|++|+.++
T Consensus 156 ~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~-~gG~~~~~~~~l~~~l~~------~g~~i~~~~~V~~i~~~~ 227 (419)
T TIGR03467 156 LSALNTPPERASAALAAKVLR-DSFLAGRAASDLLLP-RVPLSELFPEPARRWLDS------RGGEVRLGTRVRSIEANA 227 (419)
T ss_pred HHHcCCCHHHHHHHHHHHHHH-HHHhcCCCcceeeee-CCCHHHHHHHHHHHHHHH------cCCEEEcCCeeeEEEEcC
Confidence 345789999999987764321 1111 1223333 7999887755 8988865 489999999999999998
Q ss_pred CeEEEEe-CCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeec
Q 021822 84 NKVIITT-EDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAH 162 (307)
Q Consensus 84 ~~v~V~~-~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~ 162 (307)
+++.+.. .+|+++.||+||+|+|++++.++ .|. +.+.+.++++.|.++.++++.|++++|.+. ......+
T Consensus 228 ~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~l----l~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~---~~~~~~~ 298 (419)
T TIGR03467 228 GGIRALVLSGGETLPADAVVLAVPPRHAASL----LPG--EDLGALLTALGYSPITTVHLRLDRAVRLPA---PMVGLVG 298 (419)
T ss_pred CcceEEEecCCccccCCEEEEcCCHHHHHHh----CCC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC---CeeeecC
Confidence 8865543 36778899999999999999872 222 145678899999999999999999998542 1222211
Q ss_pred CCCCceeeeeeccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCc
Q 021822 163 ETRGYFTIWQHLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGS 242 (307)
Q Consensus 163 ~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~ 242 (307)
. ....++ ......+...++.+++.+ +.++.+++++++.+.++++|.+++| ......+.+....+|... .
T Consensus 299 ~--~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~-----~ 367 (419)
T TIGR03467 299 G--LAQWLF-DRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFP-RVAGAKPLWARVIKEKRA-----T 367 (419)
T ss_pred C--ceeEEE-ECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcC-ccccCCccceEEEEccCC-----c
Confidence 1 111111 111112223455555543 3457788999999999999999997 432223455555666542 2
Q ss_pred CCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 243 YSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 243 y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
|. ..|+.. ...+.+..|.++||||||+++.+++++||||+.||++||++|++
T Consensus 368 ~~-~~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 368 FA-ATPGLN-RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred cc-cCCccc-ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 22 234542 23455667889999999999988888999999999999999874
No 14
>PLN02612 phytoene desaturase
Probab=99.93 E-value=1.4e-24 Score=206.84 Aligned_cols=268 Identities=16% Similarity=0.195 Sum_probs=181.2
Q ss_pred ccccCcccccccccCCcccc-c-c-ccCCCceeeeCCCCH-HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe
Q 021822 10 FEEAEPTRISSLKNTFPRQL-M-E-DFGEDSYFVADPRGF-ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK 85 (307)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~~~-~-~-~~~~~~~~~~~~gG~-~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~ 85 (307)
..++.+|+++|+..+..... + + ..+....++ .|+. +.|++.|++.+.+ +|++|++|++|++|+.++++
T Consensus 269 ~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~--~G~~~~~l~~~l~~~l~~------~G~~I~l~~~V~~I~~~~~g 340 (567)
T PLN02612 269 ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPERLCMPIVDHFQS------LGGEVRLNSRIKKIELNDDG 340 (567)
T ss_pred HhcCCCHHHhhHHHHHHHHHHHHhccCCceEeee--cCCchHHHHHHHHHHHHh------cCCEEEeCCeeeEEEECCCC
Confidence 34577899999988864321 1 1 112233343 5665 7899999999876 69999999999999987655
Q ss_pred --EEEEeCCCcEEEcCEEEEecChhhhccCcccccCCC-CHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeec
Q 021822 86 --VIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRL-PLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAH 162 (307)
Q Consensus 86 --v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l-~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~ 162 (307)
+.|.+.+|+++.+|+||+|+|+..+++++ .+.. +....+.++++.+.+++++++.|++++|.. .. .++...
T Consensus 341 ~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll---~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~-~~--~~~~~~ 414 (567)
T PLN02612 341 TVKHFLLTNGSVVEGDVYVSATPVDILKLLL---PDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNT-YD--HLLFSR 414 (567)
T ss_pred cEEEEEECCCcEEECCEEEECCCHHHHHHhC---cchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCC-CC--ceeecC
Confidence 34777788889999999999999988632 1111 223455667788999999999999998864 11 122222
Q ss_pred CCCCceeeeeec-----cccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCC--ceEEecccCc
Q 021822 163 ETRGYFTIWQHL-----ENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEP--DTMLIPKWWS 235 (307)
Q Consensus 163 ~~~~~~~~~~~~-----~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~--~~~~~~~W~~ 235 (307)
.+. ..++.+. +..+++++++.+.+. .+.+|..++++++.+.++++|+++|| +...++. ..+....+..
T Consensus 415 ~~~--~~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L~~lfp-~~~~~~~~~~~i~~~~~v~ 489 (567)
T PLN02612 415 SPL--LSVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKELAKLFP-DEISADQSKAKILKYHVVK 489 (567)
T ss_pred CCC--ceeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHHHHHCC-cccccccCCceEEEEEEec
Confidence 211 1111111 112345555554432 45678899999999999999999997 4311211 2233334444
Q ss_pred CCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 236 NRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 236 ~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
.|.+. |. ..|+.. ...+..++|.+||||||||+..+|+|+||||+.||++||++|++.++.
T Consensus 490 ~P~a~--~~-~~pg~~-~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 490 TPRSV--YK-TVPNCE-PCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred cCCce--EE-eCCCCc-ccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 55542 32 234432 234566788999999999999888999999999999999999998754
No 15
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.93 E-value=2.4e-24 Score=201.31 Aligned_cols=263 Identities=16% Similarity=0.189 Sum_probs=182.9
Q ss_pred ccccCcccccccccCCcccc--cc-ccCCCceeeeCCCC-HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe
Q 021822 10 FEEAEPTRISSLKNTFPRQL--ME-DFGEDSYFVADPRG-FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK 85 (307)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~~~--~~-~~~~~~~~~~~~gG-~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~ 85 (307)
-.++.+|+++|+..+.+... +. .++....+. .|| ++++++.|++.+.+ .|++|++|++|++|...+++
T Consensus 174 ~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~--~g~~~~~l~~~l~~~l~~------~g~~i~l~~~V~~I~~~~~~ 245 (453)
T TIGR02731 174 ALNFINPDELSMTVVLTALNRFLQERHGSKMAFL--DGAPPERLCQPIVDYITS------RGGEVRLNSRLKEIVLNEDG 245 (453)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEee--cCCChHHHHHHHHHHHHh------cCCEEeCCCeeEEEEECCCC
Confidence 34578999999988764322 11 222222333 344 68899999999876 58999999999999875544
Q ss_pred -E-EEEeCCCc-----EEEcCEEEEecChhhhccCcccccCCCC-HHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcce
Q 021822 86 -V-IITTEDGS-----VYHANYVIVTVSVGVLQSDLIGFVPRLP-LWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEF 157 (307)
Q Consensus 86 -v-~V~~~~G~-----~~~ad~VI~a~P~~~l~~~~i~~~p~l~-~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~ 157 (307)
+ .|.+.+|+ ++.||.||+|+|++.+.++ +++.++ ....+.++++.+.++.++.+.|++++|... .
T Consensus 246 ~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~l---L~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~---~- 318 (453)
T TIGR02731 246 SVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLL---LPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD---H- 318 (453)
T ss_pred CEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhh---CchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCC---c-
Confidence 4 46665554 7899999999999988762 222221 234456677889999999999999987531 1
Q ss_pred EEeecCCCCceeeee----eccccCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCC-CCCCCceEEecc
Q 021822 158 LLYAHETRGYFTIWQ----HLENELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGK-QIPEPDTMLIPK 232 (307)
Q Consensus 158 ~~~~~~~~~~~~~~~----~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~-~~~~~~~~~~~~ 232 (307)
+.+.+.+ .....+. .++..++++.++.+++.. +..+.++++|++.+.++++|+++|| +. ...++.++..++
T Consensus 319 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ee~~~~v~~~L~~~~~-~~~~~~~~~~~~~~~ 394 (453)
T TIGR02731 319 LLFSRSP-LLSVYADMSETCKEYADPDKSMLELVFAP--AADWIGRSDEEIIDATMAELAKLFP-NHIKADSPAKILKYK 394 (453)
T ss_pred eeeeCCC-cceeecchhhhChhhcCCCCeEEEEEecC--hhhhhcCCHHHHHHHHHHHHHHhCC-cccCCCCCceEEEEE
Confidence 2222222 1111111 012233455555544432 3457789999999999999999997 42 112466777789
Q ss_pred cCcCCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHH
Q 021822 233 WWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295 (307)
Q Consensus 233 W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il 295 (307)
|..+||+. | ...||. ....+.+++|.+||||||++++..|+|+||||++||++||++|+
T Consensus 395 ~~~~p~a~--~-~~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 395 VVKTPRSV--Y-KTTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEECCCce--e-ccCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 99999984 4 245774 45667888999999999999999889999999999999999874
No 16
>PRK07233 hypothetical protein; Provisional
Probab=99.92 E-value=8.6e-24 Score=196.45 Aligned_cols=266 Identities=15% Similarity=0.178 Sum_probs=179.7
Q ss_pred ccccccCcccccccccCCccccccccC-----CCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec
Q 021822 8 NDFEEAEPTRISSLKNTFPRQLMEDFG-----EDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS 82 (307)
Q Consensus 8 ~~~~~~~~~~~~s~~~~~~~~~~~~~~-----~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~ 82 (307)
+.-.++.+++++|+..++.......+. ...++.. +||+++|+++|++.+.+ .|++|++|++|++|+.+
T Consensus 155 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~gG~~~l~~~l~~~l~~------~g~~v~~~~~V~~i~~~ 227 (434)
T PRK07233 155 LESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL-EGGFATLIDALAEAIEA------RGGEIRLGTPVTSVVID 227 (434)
T ss_pred HhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc-CCCHHHHHHHHHHHHHh------cCceEEeCCCeeEEEEc
Confidence 455678999999987664322111110 1223334 89999999999999976 48899999999999988
Q ss_pred CCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEee-
Q 021822 83 KNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYA- 161 (307)
Q Consensus 83 ~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~- 161 (307)
++++.+...+|+++.||+||+|+|+..+.+ +.|++++...+.++.+.|.+..++++.++++.+.. ++.+.
T Consensus 228 ~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~----ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ 298 (434)
T PRK07233 228 GGGVTGVEVDGEEEDFDAVISTAPPPILAR----LVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTDY-----YWLNIN 298 (434)
T ss_pred CCceEEEEeCCceEECCEEEECCCHHHHHh----hcCCCcHHHHhhhcccCccceEEEEEEecCCCCCC-----ceeeec
Confidence 887765556777899999999999998876 33567766677888999999999999998875321 12221
Q ss_pred cCCCCceeeee--ecc--ccCCCCceEE--EEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCc
Q 021822 162 HETRGYFTIWQ--HLE--NELPGENMIF--VTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWS 235 (307)
Q Consensus 162 ~~~~~~~~~~~--~~~--~~~~g~~~l~--~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~ 235 (307)
..+.++..++. ..+ ..++++.+++ +++.+.. .+..++++++.+.++++|.+++| +....++.+. +|.+
T Consensus 299 ~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p-~~~~~~~~~~---~~~r 372 (434)
T PRK07233 299 DPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFP-DFDRDDVRAV---RISR 372 (434)
T ss_pred CCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCC-CCChhheeeE---EEEE
Confidence 11112211211 111 1234555433 3444332 24567899999999999999998 5432233333 3444
Q ss_pred CCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 236 NRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 236 ~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
.+++.+. +.||. ....+.+.+|.+|||||||++...+.++|++|+.||++||++|++.+.
T Consensus 373 ~~~a~~~---~~~g~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 373 APYAQPI---YEPGY-LDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred ecccccc---ccCch-hhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 4455433 34553 233456677889999999964443445899999999999999998764
No 17
>PLN02576 protoporphyrinogen oxidase
Probab=99.92 E-value=1.1e-23 Score=199.02 Aligned_cols=234 Identities=15% Similarity=0.191 Sum_probs=166.8
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeC--CCc-EEEcCEEEEecChhhhccCccccc
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTE--DGS-VYHANYVIVTVSVGVLQSDLIGFV 118 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~--~G~-~~~ad~VI~a~P~~~l~~~~i~~~ 118 (307)
+|||++|+++|++.+. .++|++|++|++|+..+++ |.|++. +|+ ++.||+||+|+|++.+.. +.
T Consensus 235 ~gG~~~L~~~la~~l~--------~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~----ll 302 (496)
T PLN02576 235 RGGLQTLPDALAKRLG--------KDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSE----ML 302 (496)
T ss_pred cchHHHHHHHHHHhhC--------cCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHH----Hh
Confidence 8999999999999862 1689999999999998876 665543 553 689999999999999987 23
Q ss_pred CCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCC------CC-CcceEEeecCCCC-ceeeeee--cc-ccCCCCceEEEE
Q 021822 119 PRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPT------GP-GTEFLLYAHETRG-YFTIWQH--LE-NELPGENMIFVT 187 (307)
Q Consensus 119 p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~------~~-~~~~~~~~~~~~~-~~~~~~~--~~-~~~~g~~~l~~~ 187 (307)
+++++...+++..+.|.++.+|++.|++++|.. +. +..++....+... ...+|.+ +. ..+++..+++.|
T Consensus 303 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~ 382 (496)
T PLN02576 303 RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNY 382 (496)
T ss_pred cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEE
Confidence 345666788889999999999999999988864 11 1111111111111 1123322 11 224455667778
Q ss_pred ecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhh---CCC--
Q 021822 188 VTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQ---QPF-- 262 (307)
Q Consensus 188 ~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~---~p~-- 262 (307)
+.+..+..+.+++++++.+.++++|+++++ ....+.|.....++|.. +++.+.+|+... .+.+. .+.
T Consensus 383 ~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g-~~~~~~p~~~~~~~w~~------a~P~~~~g~~~~-~~~~~~~l~~~~~ 454 (496)
T PLN02576 383 IGGSRNTGIASASEEELVEAVDRDLRKLLL-KPGAPPPKVVGVRVWPK------AIPQYLLGHLDV-LEAAEKMEKDLGL 454 (496)
T ss_pred ECCCCCcccccCCHHHHHHHHHHHHHHHhC-CCCCCCCcEEEEeEcCc------ccCCCCcCHHHH-HHHHHHHHHhcCC
Confidence 887777778889999999999999999995 32223566667788974 444455665322 22222 222
Q ss_pred CcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 263 GRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 263 ~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
++|++|||++.. .++++|+.||+++|++|+..+.
T Consensus 455 ~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 455 PGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 699999999985 3699999999999999998865
No 18
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.92 E-value=2.4e-23 Score=194.44 Aligned_cols=260 Identities=16% Similarity=0.187 Sum_probs=178.0
Q ss_pred ccccccCcccccccccCCcccc-------------ccc------cCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCC
Q 021822 8 NDFEEAEPTRISSLKNTFPRQL-------------MED------FGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDP 68 (307)
Q Consensus 8 ~~~~~~~~~~~~s~~~~~~~~~-------------~~~------~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~ 68 (307)
+.-.|+.+++++|+..+.+... ... +.+..++.. +|||++|+++|++.+.. .
T Consensus 164 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~l~~~l~~~l~~--------~ 234 (451)
T PRK11883 164 LSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTL-KGGLQSLIEALEEKLPA--------G 234 (451)
T ss_pred hceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEee-ccHHHHHHHHHHHhCcC--------C
Confidence 4456889999999876542211 000 122345433 89999999999999752 2
Q ss_pred eeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCC
Q 021822 69 RLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKF 148 (307)
Q Consensus 69 ~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~ 148 (307)
+|++|++|++|+.++++|.|.+.+|+++.||+||+|+|+..+.++ ... +...++++.+.|.++.++++.|++++
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~~----~~~~~~~~~~~~~~~~~v~l~~~~~~ 308 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVA----PPAFALFKTIPSTSVATVALAFPESA 308 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--ccC----hhHHHHHhCCCCCceEEEEEEecccc
Confidence 899999999999998889998889988999999999999999873 122 23467788999999999999999885
Q ss_pred cCCCCCcceEEee-cCCCCceee-eeec--cc-cCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCC
Q 021822 149 WPTGPGTEFLLYA-HETRGYFTI-WQHL--EN-ELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIP 223 (307)
Q Consensus 149 w~~~~~~~~~~~~-~~~~~~~~~-~~~~--~~-~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~ 223 (307)
+... ....+... +.+.....+ |.+. .. .+++..++..+.+........+++++++++.++++|++++ +.+ .
T Consensus 309 ~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~--g~~-~ 384 (451)
T PRK11883 309 TNLP-DGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVM--GIT-G 384 (451)
T ss_pred CCCC-CceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHh--CCC-C
Confidence 2221 11122222 222222222 3221 11 2334555554443333333567899999999999999999 543 3
Q ss_pred CCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhhCC---CCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 224 EPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQP---FGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 224 ~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p---~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
++....+++|.. +|+.+.++.. .....+..+ .++||+||+++.+ +.+++|+.||+++|++|++
T Consensus 385 ~~~~~~~~rw~~------a~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 385 DPEFTIVQRWKE------AMPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CceEEEEeecCc------cCCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence 567788899975 4555566653 222223222 4599999999864 4599999999999999986
No 19
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.92 E-value=6.5e-23 Score=192.22 Aligned_cols=264 Identities=14% Similarity=0.217 Sum_probs=180.2
Q ss_pred cccccCcccccccccCCcccc-c-cc-----------------cCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCe
Q 021822 9 DFEEAEPTRISSLKNTFPRQL-M-ED-----------------FGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPR 69 (307)
Q Consensus 9 ~~~~~~~~~~~s~~~~~~~~~-~-~~-----------------~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~ 69 (307)
.-.|+.+++++|....++.+. + .. .+...++.. +|||++|+++|++.+. +++
T Consensus 170 ~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~gG~~~l~~~l~~~l~--------~~~ 240 (463)
T PRK12416 170 SGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSF-KGGLSTIIDRLEEVLT--------ETV 240 (463)
T ss_pred cccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEee-CCCHHHHHHHHHHhcc--------ccc
Confidence 345899999999865443310 0 00 111223333 8999999999999984 357
Q ss_pred eecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCc
Q 021822 70 LKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFW 149 (307)
Q Consensus 70 i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w 149 (307)
|++|++|++|+.+++++.|.+.+|+.+.||+||+|+|++.+.+ +.+.|.+ ...++++.+.++.+|++.|++++|
T Consensus 241 i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l----~~~~~~~~~~~~~~v~l~~~~~~~ 314 (463)
T PRK12416 241 VKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNEL----NEQFHTFKNSSLISIYLGFDILDE 314 (463)
T ss_pred EEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcch----hHHHhcCCCCceEEEEEEechhhc
Confidence 9999999999999889999888888899999999999999886 3344444 345678889999999999998766
Q ss_pred CCCC-CcceEEeecCCCCce-eeeee--ccccCCCCceEEE-Eec--chhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCC
Q 021822 150 PTGP-GTEFLLYAHETRGYF-TIWQH--LENELPGENMIFV-TVT--DEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQI 222 (307)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~l~~-~~~--~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~ 222 (307)
.... +..++....++.... ..|.+ +....++..+|+. ++. +..++.+.+++++++.+.++++|++++ |..
T Consensus 315 ~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~l--G~~- 391 (463)
T PRK12416 315 QLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSL--GIK- 391 (463)
T ss_pred CCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHh--CCC-
Confidence 4311 222222111111111 12221 1111234444444 553 356667888999999999999999999 543
Q ss_pred CCCceEEecccCcCCCCCCcCCCCCCCCChh---hhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 223 PEPDTMLIPKWWSNRLYKGSYSNWPNGYTLH---SYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 223 ~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~---~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
.+|....+++|.. +++.+.+++... ..+.+..+.++|++||+++.. .+|++|+.||+++|++|++.+.
T Consensus 392 ~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 392 GEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred CCceEEEEEEccc------cCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHHHHHHHHHHHHHHhh
Confidence 3688888999975 233333444221 123444556899999999875 3599999999999999998753
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.87 E-value=5.8e-21 Score=180.64 Aligned_cols=266 Identities=13% Similarity=0.058 Sum_probs=175.7
Q ss_pred cccCcccccccccCCccccc---cccCCCceeeeCCCCHHH-HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC--C
Q 021822 11 EEAEPTRISSLKNTFPRQLM---EDFGEDSYFVADPRGFET-VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK--N 84 (307)
Q Consensus 11 ~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~gG~~~-l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~--~ 84 (307)
.++.+++++|+..+...+.+ ..-++.-+++ +||++. |++.+++.|++ .|++|+++++|++|+.++ +
T Consensus 257 ~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~--~Gg~~~~l~~pl~~~L~~------~Gg~V~l~~~V~~I~~~~~~~ 328 (569)
T PLN02487 257 LGFIDCDNISARCMLTIFSLFATKTEASLLRML--KGSPDVRLSGPIAKYITD------RGGRFHLRWGCREILYDKSPD 328 (569)
T ss_pred hhCCCHHHHHHHHHHHHHHHHhhcCCcceeeec--CCCchHHHHHHHHHHHHH------cCCEEEeCCceEEEEEecCCC
Confidence 56789999998877533321 1111234555 899995 99999999988 599999999999999863 2
Q ss_pred e----EEEEe---CCCcEEEcCEEEEecChhhhccCcccccCCCCH--HHHHHHhhcCCCcceEEEEEcCCCCcCCC-CC
Q 021822 85 K----VIITT---EDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPL--WKKLAINNFDMAIYTKIFMKFPYKFWPTG-PG 154 (307)
Q Consensus 85 ~----v~V~~---~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~--~~~~~i~~~~~~~~~kv~l~~~~~~w~~~-~~ 154 (307)
+ +.|.+ .+++.+.+|+||+|+|++.++++ .|+... .....+.++.+.+++.|.|.|+++.-... .+
T Consensus 329 g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L----lp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~ 404 (569)
T PLN02487 329 GETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL----LPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLE 404 (569)
T ss_pred CceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh----CCchhhccHHHhHHhcCCCeeEEEEEEEeccccccccccc
Confidence 2 24555 33456899999999999998873 243321 12466778888999999999987542211 00
Q ss_pred --c---ceEEeec---CCCCceeeeee-----cccc--CCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCC
Q 021822 155 --T---EFLLYAH---ETRGYFTIWQH-----LENE--LPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNG 219 (307)
Q Consensus 155 --~---~~~~~~~---~~~~~~~~~~~-----~~~~--~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g 219 (307)
. ++..... .....+.++.. .... ...+..|-+++... ..+..++++++.+.++++|.+++| .
T Consensus 405 ~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a--~~~~~~~~~ei~~~~~~~L~~~~p-~ 481 (569)
T PLN02487 405 LSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPG--DPYMPLSNDKIVEKVHKQVLELFP-S 481 (569)
T ss_pred ccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCC--ccccCCCHHHHHHHHHHHHHHhCc-c
Confidence 0 0111100 01111122211 1111 11235566666543 347789999999999999999998 5
Q ss_pred CCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 021822 220 KQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 220 ~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l 298 (307)
..-..+.+..+.+..+ ..|. ..||.. ..+|..++|.+|||+||||+.++|+.+||||++||++||+.|++..
T Consensus 482 ~~~~~v~~~~vv~~~~-----at~~-~~pg~~-~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 482 SRGLEVTWSSVVKIGQ-----SLYR-EAPGMD-PFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred cccCceEEEEEEEccC-----ceec-cCCCcc-ccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 3222333433333333 2232 356653 2347788899999999999999999999999999999999999875
No 21
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.86 E-value=1.9e-20 Score=175.40 Aligned_cols=264 Identities=14% Similarity=0.140 Sum_probs=167.1
Q ss_pred ccccCcccccccccCCcccc-cc--ccCCCceeeeCCCCHHH-HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC--
Q 021822 10 FEEAEPTRISSLKNTFPRQL-ME--DFGEDSYFVADPRGFET-VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-- 83 (307)
Q Consensus 10 ~~~~~~~~~~s~~~~~~~~~-~~--~~~~~~~~~~~~gG~~~-l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-- 83 (307)
-.++.+++++|...+.+.+. +. ..+..-+++ +||++. +.+.|.+.+.+ .|++|+++++|++|+.++
T Consensus 180 ~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~--~g~~~~~l~~pl~~~L~~------~Gg~i~~~~~V~~I~~~~~~ 251 (474)
T TIGR02732 180 ALGFIDCENISARCMLTIFMLFAAKTEASKLRML--KGSPDKYLTKPILEYIEA------RGGKFHLRHKVREIKYEKSS 251 (474)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeee--cCCcchhHHHHHHHHHHH------CCCEEECCCEEEEEEEecCC
Confidence 35688999999988754221 11 222234444 688776 55668888876 499999999999999754
Q ss_pred Ce---E-EEEeCCC---cEEEcCEEEEecChhhhccCcccccCCCC--HHHHHHHhhcCCCcceEEEEEcCCCCcCCC-C
Q 021822 84 NK---V-IITTEDG---SVYHANYVIVTVSVGVLQSDLIGFVPRLP--LWKKLAINNFDMAIYTKIFMKFPYKFWPTG-P 153 (307)
Q Consensus 84 ~~---v-~V~~~~G---~~~~ad~VI~a~P~~~l~~~~i~~~p~l~--~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~-~ 153 (307)
++ + .|.+.+| +++.+|+||+|+|++.++++ .|+.. ......+.++.+.++..|+|.|+++.-... .
T Consensus 252 ~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L----l~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~ 327 (474)
T TIGR02732 252 DGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL----LPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDL 327 (474)
T ss_pred CCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh----CChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccch
Confidence 22 3 2344433 45899999999999999873 23321 124567788999999999999986432110 0
Q ss_pred Cc-ceE----Eee---cCCCCceeeeeecc-----c-cCCCCc-eEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCC
Q 021822 154 GT-EFL----LYA---HETRGYFTIWQHLE-----N-ELPGEN-MIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGN 218 (307)
Q Consensus 154 ~~-~~~----~~~---~~~~~~~~~~~~~~-----~-~~~g~~-~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~ 218 (307)
.. ..+ ... ........++...+ . .+++.. +|.+++... ..+.+++++++.+.++++|++++|
T Consensus 328 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~L~~~~p- 404 (474)
T TIGR02732 328 AKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPG--DPWMPESNEEIAKRVDKQVRALFP- 404 (474)
T ss_pred hhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeCh--hhhcCCCHHHHHHHHHHHHHHhCc-
Confidence 00 000 000 00001111211110 1 123333 344444432 346779999999999999999998
Q ss_pred CCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHH
Q 021822 219 GKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295 (307)
Q Consensus 219 g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il 295 (307)
...-..+.+..+.+..+. .| .+.||.. ..+|...+|.+|||+||||+..+|+.+||||+.||++||+.||
T Consensus 405 ~~~~~~~~~~~v~~~~~a-----~~-~~~pg~~-~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 405 SSKNLKLTWSSVVKLAQS-----LY-REAPGMD-PFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cccCCceeEEEEEEecCc-----ee-ccCCCCc-ccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 532223344333333321 12 2356664 2356777888999999999999999999999999999999874
No 22
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.85 E-value=6.7e-21 Score=158.33 Aligned_cols=225 Identities=18% Similarity=0.316 Sum_probs=165.5
Q ss_pred eeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCc-EEEcCEEEEecChhhhccCcccc
Q 021822 39 FVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGS-VYHANYVIVTVSVGVLQSDLIGF 117 (307)
Q Consensus 39 ~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VI~a~P~~~l~~~~i~~ 117 (307)
|+- +-||++|++.|+..+ +|+++++|++|...++.|++++.+|. ...+|.||+|+|.+++..++...
T Consensus 101 yvg-~pgmsalak~LAtdL-----------~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~ 168 (331)
T COG3380 101 YVG-EPGMSALAKFLATDL-----------TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTD 168 (331)
T ss_pred ccc-CcchHHHHHHHhccc-----------hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcc
Confidence 444 789999999999887 59999999999999999999997774 46899999999999998743222
Q ss_pred cCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeecCCCCceeeeeeccccCC----CCceEEEEecchhh
Q 021822 118 VPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELP----GENMIFVTVTDEES 193 (307)
Q Consensus 118 ~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~l~~~~~~~~a 193 (307)
...+|..++.++..+.|.+++.+++.|..+.-.+-++ .+ .+. .+ .-|...++.++ ...++++....+++
T Consensus 169 ~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G-~~---vdg-~~--laWla~d~sK~g~~p~~~~~vvqasp~wS 241 (331)
T COG3380 169 ADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG-NF---VDG-HP--LAWLARDASKKGHVPDGEIWVVQASPDWS 241 (331)
T ss_pred cccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC-cc---cCC-Ce--eeeeeccccCCCCCCcCceEEEEeCchHH
Confidence 3457888899999999999999999998654222112 11 111 11 23443442222 23456667788899
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhh-CCCCcEEEecccc
Q 021822 194 RRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQ-QPFGRIYFAGEHT 272 (307)
Q Consensus 194 ~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~-~p~~~l~~aGd~~ 272 (307)
+...+.+.|+.+..++...+.+. +..++.|.....|+|. |+. |...- ..+.+- .+..+||+||||+
T Consensus 242 r~h~~~~~e~~i~~l~aA~~~~~--~~~~~~p~~s~~H~Wr--------YA~--P~~~~-~~~~L~ad~~~~l~~cGDwc 308 (331)
T COG3380 242 REHLDHPAEQVIVALRAAAQELD--GDRLPEPDWSDAHRWR--------YAI--PNDAV-AGPPLDADRELPLYACGDWC 308 (331)
T ss_pred HHhhcCCHHHHHHHHHHhhhhcc--CCCCCcchHHHhhccc--------ccc--ccccc-cCCccccCCCCceeeecccc
Confidence 98889999999988888888888 4456677777889996 332 22211 112222 4456899999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHH
Q 021822 273 NSTYLGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 273 ~~~~~g~~egAv~SG~~aA~~il~~l 298 (307)
+. |.+|||..||..+|++|++.|
T Consensus 309 ~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 309 AG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred cC---cchhHHHhccHHHHHHHHhcC
Confidence 87 789999999999999999754
No 23
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.84 E-value=2.3e-19 Score=163.47 Aligned_cols=257 Identities=15% Similarity=0.184 Sum_probs=180.6
Q ss_pred cccCcccccccccCCcccccc--ccCCC----------------ceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeec
Q 021822 11 EEAEPTRISSLKNTFPRQLME--DFGED----------------SYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKL 72 (307)
Q Consensus 11 ~~~~~~~~~s~~~~~~~~~~~--~~~~~----------------~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l 72 (307)
-|+.+++.+|+..+++.+... .++.. ..|.+.+||+++|+++|++.+. .+|++
T Consensus 161 iy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~---------~~i~~ 231 (444)
T COG1232 161 IYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE---------AKIRT 231 (444)
T ss_pred hhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh---------hceee
Confidence 488999999999777544211 22211 2455669999999999999985 35999
Q ss_pred CCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCC
Q 021822 73 KKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTG 152 (307)
Q Consensus 73 ~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~ 152 (307)
+++|++|.....++++.+.+|+.+.||.||+|+|++.+.+ +.++ ......+.++.+.++..|.+.++++--...
T Consensus 232 ~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~----ll~~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~ 305 (444)
T COG1232 232 GTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELAR----LLGD--EAVSKAAKELQYTSVVTVVVGLDEKDNPAL 305 (444)
T ss_pred cceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHH----HcCC--cchhhhhhhccccceEEEEEEeccccccCC
Confidence 9999999999777877788888899999999999999986 3333 233567789999999999999987511111
Q ss_pred CCcc-eEEeecCCCCceeeeee-c-cc-cCCCCceEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceE
Q 021822 153 PGTE-FLLYAHETRGYFTIWQH-L-EN-ELPGENMIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTM 228 (307)
Q Consensus 153 ~~~~-~~~~~~~~~~~~~~~~~-~-~~-~~~g~~~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~ 228 (307)
+... +++..+.......+|.+ . .. .+.|+.++.+++.....+....+++||+.+.+++.|.++++ .. .++...
T Consensus 306 ~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~--~~-~~~~~~ 382 (444)
T COG1232 306 PDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGG--IN-GDPVFV 382 (444)
T ss_pred CCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcC--cC-cchhhe
Confidence 1121 22222222122234432 1 11 23467788877665544445668899999999999999995 32 245577
Q ss_pred EecccCcCCCCCCcCCCCCCCCChhhhhHhhC--C--CCcEEEecccccCCCCcchhHHHHHHHHHHHHHH
Q 021822 229 LIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQ--P--FGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295 (307)
Q Consensus 229 ~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~--p--~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il 295 (307)
.+.||.. +++++.+|+... ...++. + .++|+.+|.+... . ++++++.+|..||++|+
T Consensus 383 ~v~r~~~------~~PqY~vG~~~~-~~~ir~~l~~~y~gi~~~G~~~~g--~-g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 383 EVTRWKY------AMPQYEVGHLDR-LEPIRAALKGAYPGIKSVGRYGEG--V-GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred eeeeccc------cCCccchhHHHH-HHHHHHhhccccCCeEEeccCCCC--C-CchHHHHHHHHHHHHhh
Confidence 8888864 667777887543 222222 1 1689999999765 2 59999999999999886
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.83 E-value=1.2e-18 Score=164.55 Aligned_cols=269 Identities=10% Similarity=0.066 Sum_probs=162.4
Q ss_pred ccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe
Q 021822 12 EAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT 90 (307)
Q Consensus 12 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~ 90 (307)
.+.+|++.|.........+....++.+++ +|||++|+++|++.+++ .|++|+++++|++|..+++++ .|.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~GG~~~l~~aL~~~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~ 270 (492)
T TIGR02733 199 SQEDADETAALYGATVLQMAQAPHGLWHL--HGSMQTLSDRLVEALKR------DGGNLLTGQRVTAIHTKGGRAGWVVV 270 (492)
T ss_pred ccCChhhhhHHHHHHHhhccccCCCceee--cCcHHHHHHHHHHHHHh------cCCEEeCCceEEEEEEeCCeEEEEEE
Confidence 34566677766532111122222345665 89999999999999987 599999999999999887652 3433
Q ss_pred CCC-----cEEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCc-ceEEEEEcCCCCcCCCCCcce-EEeecC
Q 021822 91 EDG-----SVYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAI-YTKIFMKFPYKFWPTGPGTEF-LLYAHE 163 (307)
Q Consensus 91 ~~G-----~~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~-~~kv~l~~~~~~w~~~~~~~~-~~~~~~ 163 (307)
.+| +++.||+||+|+|+..+.++ + ..+.+++...+.++++.+.+ .+++++.+++...+.+...++ ..+.+.
T Consensus 271 ~~~~~~~~~~~~ad~VI~~~~~~~~~~l-l-~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~ 348 (492)
T TIGR02733 271 VDSRKQEDLNVKADDVVANLPPQSLLEL-L-GPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQ 348 (492)
T ss_pred ecCCCCceEEEECCEEEECCCHHHHHHh-c-CcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCC
Confidence 343 57899999999999988762 2 23467766777788888876 457889998732111111111 122221
Q ss_pred CCCceeeeeecc--ccCCCCceEEEEecchh-------hHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceE----Ee
Q 021822 164 TRGYFTIWQHLE--NELPGENMIFVTVTDEE-------SRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTM----LI 230 (307)
Q Consensus 164 ~~~~~~~~~~~~--~~~~g~~~l~~~~~~~~-------a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~----~~ 230 (307)
. .++......+ .+|+|+.++++.+..+. ..+|.+. .+++.+.+++.|.+.+| ++. +.+.. ..
T Consensus 349 ~-~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~-k~~~~~~il~~le~~~p-~l~--~~i~~~~v~TP 423 (492)
T TIGR02733 349 G-SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAK-KKQYTQTIIERLGHYFD-LLE--ENWVHVELATP 423 (492)
T ss_pred c-eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHCC-Ccc--ccEEEEEccCC
Confidence 1 1111111111 25667777755443221 1223332 45688899999999998 642 22211 11
Q ss_pred cccCcCCCC-CCc-CCCC-CCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHH
Q 021822 231 PKWWSNRLY-KGS-YSNW-PNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKC 297 (307)
Q Consensus 231 ~~W~~~~~~-~g~-y~~~-~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~ 297 (307)
..|.+.... .|+ |... .+.+.....+...+|++||||||++++++ +.+.|++.||+.||+.|++.
T Consensus 424 ~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 424 RTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG--EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred chHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC--CcHHHHHHHHHHHHHHHhhc
Confidence 233332122 344 3221 12221111122356889999999999884 45999999999999999863
No 25
>PRK07208 hypothetical protein; Provisional
Probab=99.81 E-value=2e-18 Score=162.57 Aligned_cols=266 Identities=12% Similarity=0.088 Sum_probs=172.1
Q ss_pred ccccccCcccccccccCCccccc-----------cc-----------cC--CCceeeeCCCCHHHHHHHHHHhhhccCCC
Q 021822 8 NDFEEAEPTRISSLKNTFPRQLM-----------ED-----------FG--EDSYFVADPRGFETVVHYIANQFLSHNNN 63 (307)
Q Consensus 8 ~~~~~~~~~~~~s~~~~~~~~~~-----------~~-----------~~--~~~~~~~~~gG~~~l~~~L~~~~~~~~~~ 63 (307)
+.-.|+.+|+++|+.++.++... .. .+ ...+..+ +|||++|+++|++.+.+
T Consensus 156 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gG~~~l~~~L~~~l~~---- 230 (479)
T PRK07208 156 TEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYP-KLGPGQLWETAAEKLEA---- 230 (479)
T ss_pred hhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCC-CCCcchHHHHHHHHHHH----
Confidence 44568999999999864432210 00 00 0233433 89999999999999976
Q ss_pred CCCCCeeecCCeeEEEEecCCeE--EEEe--CCCc--EEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhcCCCcc
Q 021822 64 KITDPRLKLKKTVRKINQSKNKV--IITT--EDGS--VYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNFDMAIY 137 (307)
Q Consensus 64 ~~~g~~i~l~~~V~~I~~~~~~v--~V~~--~~G~--~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~~~~~~ 137 (307)
.|++|++|++|++|+.+++++ .+.. .+|+ .+.||+||+|+|+..+.++ +.|++++...++++.+.|.+.
T Consensus 231 --~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~---l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 231 --LGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAA---LDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred --cCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHh---cCCCCCHHHHHHHhCCCccee
Confidence 589999999999999987763 2332 2453 5889999999999988762 345677777788889999999
Q ss_pred eEEEEEcCCCCcCCCCCcceEEeecC-CCCceee--eeec--cccCCCCc-eEEE-EecchhhHHHhhCCHHHHHHHHHH
Q 021822 138 TKIFMKFPYKFWPTGPGTEFLLYAHE-TRGYFTI--WQHL--ENELPGEN-MIFV-TVTDEESRRIEQQSEKKTKAEIMQ 210 (307)
Q Consensus 138 ~kv~l~~~~~~w~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~g~~-~l~~-~~~~~~a~~~~~~~~e~~~~~~~~ 210 (307)
.++++.|+++.+.+. .+ ++.+. ......+ +... ...|++.+ .+.+ +...... ...+++++++.+.+++
T Consensus 306 ~~v~l~~~~~~~~~~---~~-~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~-~~~~~~deel~~~~~~ 380 (479)
T PRK07208 306 ITVGLLVKELNLFPD---NW-IYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGD-DLWNMSDEDLIALAIQ 380 (479)
T ss_pred EEEEEEecCCCCCCC---ce-EEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCC-ccccCCHHHHHHHHHH
Confidence 999999988754321 11 22221 1111001 1111 12344543 2322 2222222 2447899999999999
Q ss_pred HHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhH---hhCCCCcEEEecccccCCCCcchhHHHHHH
Q 021822 211 VLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHD---LQQPFGRIYFAGEHTNSTYLGYVDGAYFSG 287 (307)
Q Consensus 211 ~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~---~~~p~~~l~~aGd~~~~~~~g~~egAv~SG 287 (307)
+|.++.+ ..-.++....+.+|.. +|+.+.+++... .+. +.++.+||++||++.... +.++++|+.||
T Consensus 381 ~L~~l~~--~~~~~~~~~~v~r~~~------a~P~y~~~~~~~-~~~~~~~~~~~~~l~laGr~~~~~-~~~~d~a~~sg 450 (479)
T PRK07208 381 ELARLGL--IRPADVEDGFVVRVPK------AYPVYDGTYERN-VEIIRDLLDHFPNLHLVGRNGMHR-YNNQDHSMLTA 450 (479)
T ss_pred HHHHcCC--CChhheeEEEEEEecC------cccCCCchHHHH-HHHHHHHHHhcCCceeeccccccc-cCChhHHHHHH
Confidence 9999642 2222455555666642 455455555322 222 335668999999886654 35899999999
Q ss_pred HHHHHHHHHHH
Q 021822 288 INTANALIKCL 298 (307)
Q Consensus 288 ~~aA~~il~~l 298 (307)
.++|++|++..
T Consensus 451 ~~~a~~i~~~~ 461 (479)
T PRK07208 451 MLAVENIIAGE 461 (479)
T ss_pred HHHHHHHhcCC
Confidence 99999998763
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.69 E-value=5.4e-16 Score=146.96 Aligned_cols=270 Identities=13% Similarity=0.100 Sum_probs=161.4
Q ss_pred cccCcccccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEE
Q 021822 11 EEAEPTRISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIIT 89 (307)
Q Consensus 11 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~ 89 (307)
.++.+|++.|...... .+.++.++.++. +||++.++++|++.+++ .|++|+++++|++|..++++ +.|.
T Consensus 187 ~~g~~p~~~~~~~~l~--~~~~~~~g~~~~--~gG~~~l~~al~~~~~~------~G~~i~~~~~V~~i~~~~~~~~~V~ 256 (502)
T TIGR02734 187 FLGGNPFRTPSIYALI--SALEREWGVWFP--RGGTGALVAAMAKLAED------LGGELRLNAEVIRIETEGGRATAVH 256 (502)
T ss_pred eeccCcccchHHHHHH--HHHHhhceEEEc--CCCHHHHHHHHHHHHHH------CCCEEEECCeEEEEEeeCCEEEEEE
Confidence 4567777777554321 222334445554 79999999999999987 69999999999999988776 5788
Q ss_pred eCCCcEEEcCEEEEecChhhhccCcccccCCC-CHHHHHHHhhcCC-CcceEEEEEcC---CCCcCCCCCcceEEeecC-
Q 021822 90 TEDGSVYHANYVIVTVSVGVLQSDLIGFVPRL-PLWKKLAINNFDM-AIYTKIFMKFP---YKFWPTGPGTEFLLYAHE- 163 (307)
Q Consensus 90 ~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l-~~~~~~~i~~~~~-~~~~kv~l~~~---~~~w~~~~~~~~~~~~~~- 163 (307)
+.+|+++.||.||+|+++..+...+ +.+.. +....+.+++..+ .+.+++++.++ +++ +.. ..+.+.+.++
T Consensus 257 ~~~g~~~~ad~VI~a~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~-~~~-~~~~~~~~~~~ 332 (502)
T TIGR02734 257 LADGERLDADAVVSNADLHHTYRRL--LPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHW-PQL-AHHTLCFGPRY 332 (502)
T ss_pred ECCCCEEECCEEEECCcHHHHHHHh--cCccccccccccccccCCcCCeeeEEEEeeccccCcC-CCc-CceeEecCcCH
Confidence 8888889999999999987665422 22333 2223345566664 45677888887 333 221 1111111110
Q ss_pred -----------CCC-ceeeeee----cc--ccCCCCceEEEEecchh----hHHHhhCCHHHHHHHHHHHHHHH-hCCCC
Q 021822 164 -----------TRG-YFTIWQH----LE--NELPGENMIFVTVTDEE----SRRIEQQSEKKTKAEIMQVLKKM-FGNGK 220 (307)
Q Consensus 164 -----------~~~-~~~~~~~----~~--~~~~g~~~l~~~~~~~~----a~~~~~~~~e~~~~~~~~~L~~~-~p~g~ 220 (307)
..+ ...++.. .+ .+|+|++.+.+++..+. ...|.+ ..+++.+.+++.|.+. +| ++
T Consensus 333 ~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p-~l 410 (502)
T TIGR02734 333 KELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERAIP-GL 410 (502)
T ss_pred HHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCC-Ch
Confidence 000 0011111 12 35677777665543221 112333 2567889999999997 88 64
Q ss_pred CCCCCceEE----ecccCcCCCC-CCc-CCC-CCCCCChhhhhH-hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHH
Q 021822 221 QIPEPDTML----IPKWWSNRLY-KGS-YSN-WPNGYTLHSYHD-LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTAN 292 (307)
Q Consensus 221 ~~~~~~~~~----~~~W~~~~~~-~g~-y~~-~~~g~~~~~~~~-~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~ 292 (307)
. +.+... ...|.+.... .|+ |.. ....+....++. ..+|++|||+||++++++ +.+.+|+.||+.||+
T Consensus 411 ~--~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~ 486 (502)
T TIGR02734 411 R--DRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG--AGVPGVLGSAKATAK 486 (502)
T ss_pred h--HheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC--CCHHHHHHHHHHHHH
Confidence 2 212111 1233322111 343 321 111111112222 345789999999999874 469999999999999
Q ss_pred HHHHHHhh
Q 021822 293 ALIKCLKH 300 (307)
Q Consensus 293 ~il~~l~~ 300 (307)
.|+++++.
T Consensus 487 ~il~~~~~ 494 (502)
T TIGR02734 487 LMLGDLAP 494 (502)
T ss_pred HHHhhccC
Confidence 99988654
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.68 E-value=3.6e-15 Score=140.92 Aligned_cols=241 Identities=16% Similarity=0.194 Sum_probs=146.6
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecChhhhccCcccccCCC
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPRL 121 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~l 121 (307)
+||+..|+++|++.+++ .|++|+++++|++|..++++ +.|.+.+|+++.+|.||+++.+..+.+.++. ...+
T Consensus 225 ~gG~~~l~~~L~~~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~ 297 (493)
T TIGR02730 225 KGGVGQIAESLVKGLEK------HGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENL 297 (493)
T ss_pred CChHHHHHHHHHHHHHH------CCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-cccc
Confidence 89999999999999988 69999999999999987665 4688888888999999999877644321221 1124
Q ss_pred CHHHHHHHhhcCCC-cceEEEEEcCCCCcCCCCCcceEEeec-----CCCCceeeeee----cc--ccCCCCceEEEEec
Q 021822 122 PLWKKLAINNFDMA-IYTKIFMKFPYKFWPTGPGTEFLLYAH-----ETRGYFTIWQH----LE--NELPGENMIFVTVT 189 (307)
Q Consensus 122 ~~~~~~~i~~~~~~-~~~kv~l~~~~~~w~~~~~~~~~~~~~-----~~~~~~~~~~~----~~--~~~~g~~~l~~~~~ 189 (307)
+......++++.+. +.+++++.++...-+.......++... ...+ .++.+ .+ ..|+|++++.+++.
T Consensus 298 ~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~v~~ps~~dps~aP~G~~~i~~~~~ 375 (493)
T TIGR02730 298 PKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQG--TIFVSIPTLLDPSLAPEGHHIIHTFTP 375 (493)
T ss_pred chhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCC--eEEEEeCCCCCCCCCcCCcEEEEEecC
Confidence 44434445666654 478899999874322211111111110 1111 11111 12 24667777766554
Q ss_pred chhhHHHhh-------CCHHHHHHHHHHHHHHHhCCCCCCCCCceEE----ecccCcC-CCCCCcCCCCCCCCChh-hh-
Q 021822 190 DEESRRIEQ-------QSEKKTKAEIMQVLKKMFGNGKQIPEPDTML----IPKWWSN-RLYKGSYSNWPNGYTLH-SY- 255 (307)
Q Consensus 190 ~~~a~~~~~-------~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~----~~~W~~~-~~~~g~y~~~~~g~~~~-~~- 255 (307)
.. ...|.+ ...+++.+.+++.|.+.+| ++. +-+... ...|.+. -...|+|.......... ..
T Consensus 376 ~~-~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p-~l~--~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~ 451 (493)
T TIGR02730 376 SS-MEDWQGLSPKDYEAKKEADAERIIDRLEKIFP-GLD--SAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPM 451 (493)
T ss_pred CC-hhhccCCCcHHHHHHHHHHHHHHHHHHHHHCC-Chh--hcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccC
Confidence 22 222221 1255688999999999998 642 222111 1223221 11245553211000000 11
Q ss_pred hHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 021822 256 HDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 256 ~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l 298 (307)
+...+|.+|||+||++++++ |.+.+|+.||+.||+.|+.++
T Consensus 452 ~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 452 PFNRTAIPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCCCCCCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 23457889999999999874 469999999999999999864
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.36 E-value=2.6e-11 Score=107.51 Aligned_cols=265 Identities=17% Similarity=0.158 Sum_probs=169.5
Q ss_pred ccccccCcccccccccCCccccc--cccC-----------------------------CCceeeeCCCCHHHHHHHHHHh
Q 021822 8 NDFEEAEPTRISSLKNTFPRQLM--EDFG-----------------------------EDSYFVADPRGFETVVHYIANQ 56 (307)
Q Consensus 8 ~~~~~~~~~~~~s~~~~~~~~~~--~~~~-----------------------------~~~~~~~~~gG~~~l~~~L~~~ 56 (307)
|.=.||.|++++|.+..|+..-+ ..|| +..--...+||++.++++|.+.
T Consensus 179 i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~ 258 (491)
T KOG1276|consen 179 IRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKS 258 (491)
T ss_pred hCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHH
Confidence 44568999999999988853311 1333 1111122389999999999999
Q ss_pred hhccCCCCCCCCeeecCCeeEEEEecC-CeEEEEeC--CCc-EEEcCEEEEecChhhhccCcccccCCCCHHHHHHHhhc
Q 021822 57 FLSHNNNKITDPRLKLKKTVRKINQSK-NKVIITTE--DGS-VYHANYVIVTVSVGVLQSDLIGFVPRLPLWKKLAINNF 132 (307)
Q Consensus 57 ~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v~V~~~--~G~-~~~ad~VI~a~P~~~l~~~~i~~~p~l~~~~~~~i~~~ 132 (307)
+.+ ....|.++-++..+.... ++|.+++. ++. .+..+++..|+|...++. +.+.+.+....++..+
T Consensus 259 L~~------~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~~~~~sls~~L~ei 328 (491)
T KOG1276|consen 259 LGE------REVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLRGLQNSLSNALSEI 328 (491)
T ss_pred hcc------cchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hccccchhhhhhhhcC
Confidence 976 256788999999888754 55766654 443 356666778999999886 4456666678889999
Q ss_pred CCCcceEEEEEcCCCCc-CCCCCcceEEeecCCCC---ceeeeee--ccccCCCCceEEEEecchhhHHH--hhCCHHHH
Q 021822 133 DMAIYTKIFMKFPYKFW-PTGPGTEFLLYAHETRG---YFTIWQH--LENELPGENMIFVTVTDEESRRI--EQQSEKKT 204 (307)
Q Consensus 133 ~~~~~~kv~l~~~~~~w-~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~g~~~l~~~~~~~~a~~~--~~~~~e~~ 204 (307)
.|.++..|.+.|.++-- .+-.++..++.+....+ +-.+|++ ++. ..+.+.+++.+++.+...+ ...++|++
T Consensus 329 ~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~-~~~s~~vtvm~gg~~~~n~~~~~~S~ee~ 407 (491)
T KOG1276|consen 329 PYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPD-RSPSPKVTVMMGGGGSTNTSLAVPSPEEL 407 (491)
T ss_pred CCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCC-CCCCceEEEEecccccccCcCCCCCHHHH
Confidence 99999999999987421 11112333333211111 2223432 111 1122355555554443322 34689999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhh---hhHhh-CCCCcEEEecccccCCCCcch
Q 021822 205 KAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHS---YHDLQ-QPFGRIYFAGEHTNSTYLGYV 280 (307)
Q Consensus 205 ~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~---~~~~~-~p~~~l~~aGd~~~~~~~g~~ 280 (307)
++.+.++|++++ +..- .|...-++-|.+ |.+++..|+.... ...+. .+..+|+++|.++.. . .+
T Consensus 408 ~~~v~~alq~~L--gi~~-~P~~~~v~l~~~------ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G--v-~v 475 (491)
T KOG1276|consen 408 VNAVTSALQKML--GISN-KPVSVNVHLWKN------CIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG--V-SV 475 (491)
T ss_pred HHHHHHHHHHHh--CCCC-Ccccccceehhh------cccceecchHHHHHHHHHHHHhCCCCceEeeccccCC--C-Ch
Confidence 999999999999 5432 354444444543 5556666765321 12222 233589999999886 3 49
Q ss_pred hHHHHHHHHHHHHHH
Q 021822 281 DGAYFSGINTANALI 295 (307)
Q Consensus 281 egAv~SG~~aA~~il 295 (307)
..+|+||+++|.+++
T Consensus 476 gdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 476 GDCIESGRKTAVEVI 490 (491)
T ss_pred hHHHHhhHHHHHhhc
Confidence 999999999998875
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.34 E-value=8.4e-11 Score=104.89 Aligned_cols=246 Identities=18% Similarity=0.187 Sum_probs=141.1
Q ss_pred CCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecChhhhcc
Q 021822 34 GEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSVGVLQS 112 (307)
Q Consensus 34 ~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~~~l~~ 112 (307)
.++..|+ .|||+.+.+++++.+++ -|++|.+++.|++|-.++++ +.|.+.||+++.+..||++..+...-.
T Consensus 253 ~g~~~Yp--~GG~Gavs~aia~~~~~------~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~ 324 (561)
T KOG4254|consen 253 KGGWGYP--RGGMGAVSFAIAEGAKR------AGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE 324 (561)
T ss_pred CCcccCC--CCChhHHHHHHHHHHHh------ccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH
Confidence 3444454 89999999999999998 49999999999999998876 579999999999999999998876542
Q ss_pred CcccccCCCCHHHHHHHhhcCCC-cceE----EEEEcCCCCcCCCCCcceEEee--c-----------------CCCCce
Q 021822 113 DLIGFVPRLPLWKKLAINNFDMA-IYTK----IFMKFPYKFWPTGPGTEFLLYA--H-----------------ETRGYF 168 (307)
Q Consensus 113 ~~i~~~p~l~~~~~~~i~~~~~~-~~~k----v~l~~~~~~w~~~~~~~~~~~~--~-----------------~~~~~~ 168 (307)
.++ -...||++. .++++.+. ++.| .++.....--.+.+...+.+.- + ++.++
T Consensus 325 kLl-p~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pv- 400 (561)
T KOG4254|consen 325 KLL-PGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPV- 400 (561)
T ss_pred HhC-CCccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCe-
Confidence 221 112367654 44555442 2332 2222211110000111111110 0 11111
Q ss_pred eeeee----ccc--cCCCCceEEEEecchhhHHHhhC-------CHHHHHHHHHHHHHHHhCCCCCCCCCceEE------
Q 021822 169 TIWQH----LEN--ELPGENMIFVTVTDEESRRIEQQ-------SEKKTKAEIMQVLKKMFGNGKQIPEPDTML------ 229 (307)
Q Consensus 169 ~~~~~----~~~--~~~g~~~l~~~~~~~~a~~~~~~-------~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~------ 229 (307)
++.+ .|+ .++++++|..|..... ..|... -.++..+++++.+.+++| |+.- ..+...
T Consensus 401 -I~~siPS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~P-gfss-sv~~~dvgTP~t 476 (561)
T KOG4254|consen 401 -IELSIPSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAP-GFSS-SVESYDVGTPPT 476 (561)
T ss_pred -EEEecccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcC-Cccc-eEEEEecCCCch
Confidence 1111 222 4678888887653221 223332 346788999999999998 6531 111110
Q ss_pred ecccCcCCCCCCcCCC----CCCCCChh---hhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhhh
Q 021822 230 IPKWWSNRLYKGSYSN----WPNGYTLH---SYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHF 301 (307)
Q Consensus 230 ~~~W~~~~~~~g~y~~----~~~g~~~~---~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~~ 301 (307)
.+|.... ..|.|.. ...+.... .+...++|+++||+||+...++ |.|-+|- |+.+|...+..++-.
T Consensus 477 ~qr~l~~--~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~~ 549 (561)
T KOG4254|consen 477 HQRFLGR--PGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKLY 549 (561)
T ss_pred hhHHhcC--CCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhhH
Confidence 1111110 0232211 11222211 1223378999999999999984 4465553 999998888776553
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=2.6e-10 Score=107.47 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=60.2
Q ss_pred ccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecChhhh
Q 021822 32 DFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 32 ~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~~~l 110 (307)
.+.++.++. +|||+.|+++|++.+++ .|++|+++++|++|..++++ +.|.+.+|+.+.+|.||++.....+
T Consensus 211 ~~~~G~~~p--~GG~~al~~aL~~~~~~------~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~ 282 (487)
T COG1233 211 GLSGGVFYP--RGGMGALVDALAELARE------HGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALL 282 (487)
T ss_pred cccCCeeee--eCCHHHHHHHHHHHHHH------cCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhh
Confidence 334445554 89999999999999998 69999999999999998875 7788888877899999999988444
Q ss_pred c
Q 021822 111 Q 111 (307)
Q Consensus 111 ~ 111 (307)
.
T Consensus 283 ~ 283 (487)
T COG1233 283 A 283 (487)
T ss_pred h
Confidence 3
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=1.2e-07 Score=87.08 Aligned_cols=263 Identities=14% Similarity=0.140 Sum_probs=149.5
Q ss_pred CcccccccccCC---ccccccccCC-CceeeeCCCCHH-HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC---C-
Q 021822 14 EPTRISSLKNTF---PRQLMEDFGE-DSYFVADPRGFE-TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK---N- 84 (307)
Q Consensus 14 ~~~~~~s~~~~~---~~~~~~~~~~-~~~~~~~~gG~~-~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~---~- 84 (307)
.++|.+|.+.+. ..+.+...+. ..+.+ +|++. .+...+.+.+++ .|.+++++.+|..|..+. +
T Consensus 179 ~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~--~g~~~E~~~~p~~~yi~~------~G~~v~~~~pv~~l~l~~~~~~~ 250 (485)
T COG3349 179 IDPEGCSARFFLTILNLFLIVTLEASILRNL--RGSPDEVLLQPWTEYIPE------RGRKVHADYPVKELDLDGARGLA 250 (485)
T ss_pred cCcccCcchhHHHHHHHHHHhccCcchhhhh--cCCCcceeeehhhhhccc------cCceeeccceeeeeecccccccc
Confidence 456777775553 1112223222 33333 66654 666777888876 599999999999999765 2
Q ss_pred -eEEEEeCCCc---EEEcCEEEEecChhhhccCcccccCCCC-HHHHHHHhhcCCCcceEEEEEcCCCCcCC-CCCcceE
Q 021822 85 -KVIITTEDGS---VYHANYVIVTVSVGVLQSDLIGFVPRLP-LWKKLAINNFDMAIYTKIFMKFPYKFWPT-GPGTEFL 158 (307)
Q Consensus 85 -~v~V~~~~G~---~~~ad~VI~a~P~~~l~~~~i~~~p~l~-~~~~~~i~~~~~~~~~kv~l~~~~~~w~~-~~~~~~~ 158 (307)
.+.+... +. ...++.++.+...+.+.+. .+...+ ......+..+...+++++.+.|+...|.. .....++
T Consensus 251 ~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~---~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~ 326 (485)
T COG3349 251 KVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRD---LPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFG 326 (485)
T ss_pred ceEeeeec-CcceEeeehhhhhcccccchHhhc---CcccccccccccccccccccceeEEEEeecCccccccccchhhh
Confidence 2333333 32 3456666666666666541 222233 23345566678889999999998643332 1111111
Q ss_pred ----EeecCCCCceeeeeec----cccCCCCc-eEEEEecchhhHHHhhCCHHHHHHHHHHHHHHHhCCCCCCCCCceEE
Q 021822 159 ----LYAHETRGYFTIWQHL----ENELPGEN-MIFVTVTDEESRRIEQQSEKKTKAEIMQVLKKMFGNGKQIPEPDTML 229 (307)
Q Consensus 159 ----~~~~~~~~~~~~~~~~----~~~~~g~~-~l~~~~~~~~a~~~~~~~~e~~~~~~~~~L~~~~p~g~~~~~~~~~~ 229 (307)
+++..+. ..+++... +...++.. .+...+. ....|...+++++...+.+++..++| ..-..++....
T Consensus 327 ~dn~~~s~~~l-~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~e~~~~~~vP-~~~~a~~~~~~ 402 (485)
T COG3349 327 IDNLLWSDDTL-GGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATFEKELYELVP-SLAEAKLKSSV 402 (485)
T ss_pred hhccccccccC-Cceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHHHHHhhhcCC-chhcccccccc
Confidence 1222111 11222110 01112221 1111111 12235566788899999999998888 32111111111
Q ss_pred ecccCcCCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 230 IPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 230 ~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
... .+..| ...||.. .++|...+|..|++++||++...+.++||+|..||++||+.|++.+..
T Consensus 403 i~~------~q~~~-~~~pgs~-~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 403 LVN------QQSLY-GLAPGSY-HYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGH 465 (485)
T ss_pred eec------ccccc-ccCCCcc-ccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhh
Confidence 110 11112 2344543 246777788999999999999888899999999999999999988763
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.07 E-value=2.6e-05 Score=68.29 Aligned_cols=97 Identities=10% Similarity=0.180 Sum_probs=80.0
Q ss_pred CCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccC
Q 021822 34 GEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSD 113 (307)
Q Consensus 34 ~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~ 113 (307)
+...|++. .||...-+++|+..+ +++|+++++|.+|.+-.+++.|...+|++.++|+||+++-+.++..
T Consensus 208 ~rp~wrtV-~ggS~~yvq~laa~~---------~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~- 276 (447)
T COG2907 208 KRPTWRTV-AGGSRAYVQRLAADI---------RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA- 276 (447)
T ss_pred CCCceeEc-ccchHHHHHHHhccc---------cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHH-
Confidence 45678866 799999999999997 6799999999999999999999888999999999999999988754
Q ss_pred cccccCCCCHHHHHHHhhcCCCcceEEEEEc
Q 021822 114 LIGFVPRLPLWKKLAINNFDMAIYTKIFMKF 144 (307)
Q Consensus 114 ~i~~~p~l~~~~~~~i~~~~~~~~~kv~l~~ 144 (307)
+.++-.++.++.+.++.|.....|....
T Consensus 277 ---mL~e~sp~e~qll~a~~Ys~n~aVlhtd 304 (447)
T COG2907 277 ---LLDEPSPEERQLLGALRYSANTAVLHTD 304 (447)
T ss_pred ---hcCCCCHHHHHHHHhhhhhhceeEEeec
Confidence 2233344456789999999877666544
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.97 E-value=3.1e-05 Score=72.03 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=55.7
Q ss_pred cccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe--EEEEeCCCcEEEcCEEEEecC
Q 021822 31 EDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK--VIITTEDGSVYHANYVIVTVS 106 (307)
Q Consensus 31 ~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~a~P 106 (307)
..|+...+..+ .||++.|+++|++.+.. .|++++++++|++|..++++ +.|++.+|+++.|+.||+...
T Consensus 217 ~~~g~~p~~yp-~gG~g~L~qal~r~~a~------~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 217 SRYGKSPFIYP-LYGLGGLPQAFSRLCAI------YGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred hhccCCcceee-CCCHHHHHHHHHHHHHH------cCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 45554444444 79999999999988766 69999999999999887643 578888999999999998543
No 34
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.56 E-value=0.016 Score=52.95 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCC-CeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITD-PRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g-~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
...+.+.|.+.+.+ .| .+|+++++|++|+.+++++.|++.+|+++.+|.||.|-...
T Consensus 105 r~~l~~~L~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 105 NRVLQQALWERLQE------YPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred cHHHHHHHHHHHHh------CCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 45788888888765 35 89999999999999888899998899889999999987654
No 35
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.51 E-value=0.021 Score=52.46 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..+.+.|.+.+.+ .|.+|+.+++|++|+.+++++.|++.+|+++.+|.||.|.....
T Consensus 113 ~~l~~~L~~~~~~------~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHA------AGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 5778888888765 48899999999999998888989888888899999999987753
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.47 E-value=0.00046 Score=61.95 Aligned_cols=65 Identities=9% Similarity=0.207 Sum_probs=57.9
Q ss_pred CceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 36 DSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 36 ~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
+..|+. ....+.|++.|.+++++ +|++|+++++|.+|+.++.+..|.+.+|+++.||.+|+|+.-
T Consensus 101 Gr~Fp~-sdkA~~Iv~~ll~~~~~------~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 101 GRMFPD-SDKASPIVDALLKELEA------LGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred ceecCC-ccchHHHHHHHHHHHHH------cCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCC
Confidence 455653 36799999999999998 799999999999999999889999999989999999999974
No 37
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.38 E-value=0.028 Score=51.56 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh-hccCcccccCCCCHH
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV-LQSDLIGFVPRLPLW 124 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~-l~~~~i~~~p~l~~~ 124 (307)
...+.+.|.+.+.+ .++..+++++|++|+.+++++.|++.+|+++.+|.||.|-.... +++ .+....
T Consensus 110 ~~~l~~~L~~~~~~------~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~---~~g~~~--- 177 (388)
T PRK07494 110 NWLLNRALEARVAE------LPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVRE---AAGIGV--- 177 (388)
T ss_pred hHHHHHHHHHHHhc------CCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHH---hcCCCc---
Confidence 35677888887765 34455899999999998889999988888899999999987743 222 111111
Q ss_pred HHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeecCCCCceeeeeeccccCCCCceEEEEecchhhHHHhhCCHHHH
Q 021822 125 KKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHETRGYFTIWQHLENELPGENMIFVTVTDEESRRIEQQSEKKT 204 (307)
Q Consensus 125 ~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~a~~~~~~~~e~~ 204 (307)
....|... .+.+.++.+.... ......+.+ .+.. .+... +.+...+..+.......+..+.+++++
T Consensus 178 -----~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~--~g~~-~~~Pl---~~~~~~~v~~~~~~~~~~~~~~~~~~~ 243 (388)
T PRK07494 178 -----RTWSYPQK-ALVLNFTHSRPHQ--NVSTEFHTE--GGPF-TQVPL---PGRRSSLVWVVRPAEAERLLALSDAAL 243 (388)
T ss_pred -----eecCCCCE-EEEEEEeccCCCC--CEEEEEeCC--CCcE-EEEEC---CCCcEEEEEECCHHHHHHHHcCCHHHH
Confidence 01122211 1222332221111 111111111 1111 11111 122323333333334444556777788
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEecccCcCCCCCCcCCCCCCCCChhhhhHhhCCCCcEEEecccccCCCC--c-chh
Q 021822 205 KAEIMQVLKKMFGNGKQIPEPDTMLIPKWWSNRLYKGSYSNWPNGYTLHSYHDLQQPFGRIYFAGEHTNSTYL--G-YVD 281 (307)
Q Consensus 205 ~~~~~~~L~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~--g-~~e 281 (307)
.+.+.+.+..++ +. .... ..+ ..|+.. . ...+.+. .+++.++||+.+...| | .++
T Consensus 244 ~~~~~~~~~~~l--~~-----~~~~-~~~-------~~~~l~---~--~~~~~~~--~~rv~LiGDAAH~~~P~~GqG~n 301 (388)
T PRK07494 244 SAAIEERMQSML--GK-----LTLE-PGR-------QAWPLS---G--QVAHRFA--AGRTALVGEAAHVFPPIGAQGLN 301 (388)
T ss_pred HHHHHHHHhhhc--CC-----eEEc-cCC-------cEeech---H--HHHHhhc--cCceEEEEhhhhcCCchhhcccc
Confidence 777777666666 21 1110 000 012110 0 0011111 2799999999775322 2 688
Q ss_pred HHHHHHHHHHHHHHH
Q 021822 282 GAYFSGINTANALIK 296 (307)
Q Consensus 282 gAv~SG~~aA~~il~ 296 (307)
-|++.+...|+.+.+
T Consensus 302 ~~l~Da~~La~~L~~ 316 (388)
T PRK07494 302 LGLRDVATLVEIVED 316 (388)
T ss_pred hhHHHHHHHHHHHHh
Confidence 899999888887754
No 38
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.32 E-value=0.047 Score=49.83 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
...+.+.|.+.+.+. .|.+++++++|++|+.+++++.|++.+|+++.||.||.|-....
T Consensus 104 r~~l~~~L~~~~~~~-----~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 104 LADLGQALLSRLALL-----TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred cHHHHHHHHHHHHhC-----CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 467888888887641 17899999999999988888999888888899999999998753
No 39
>PRK09126 hypothetical protein; Provisional
Probab=97.22 E-value=0.12 Score=47.46 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+. .|.+|+.+++|++|+..++++.|++.+|+++.+|.||.|....
T Consensus 110 ~~l~~~l~~~~~~~-----~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 110 HLIRRAAYEAVSQQ-----DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHHHHHHHhhC-----CCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 45666676666431 3789999999999998888888888889889999999998874
No 40
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.17 E-value=0.1 Score=47.94 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+|+.+++|++|+.+++++.|++.+|+++.+|.||.|....
T Consensus 111 ~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEA------LGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 5778888887765 4889999999999999888899988888889999999998764
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.14 E-value=0.0012 Score=59.43 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=53.1
Q ss_pred eeeeCCCC---HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EEeCCCcEEEcCEEEEecChhh
Q 021822 38 YFVADPRG---FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-ITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 38 ~~~~~~gG---~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
++.. .+| ...+++.|.+.+.+ .|++|+.+++|++|+.++++|. |.+.+|+ +.+|.||+|+.+..
T Consensus 136 ~~~~-~~g~i~~~~l~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 136 VFFP-EGGVIDPRRLIQALAAEAQR------AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEET-TEEEEEHHHHHHHHHHHHHH------TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hccc-ccccccccchhhhhHHHHHH------hhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 3443 677 89999999999987 5999999999999999999987 9999996 99999999997754
No 42
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.98 E-value=0.18 Score=46.24 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..+-+.|.+.+.+. .|.+|+.+++|++|+.+++++.|++.+|+++.+|.||.|.....
T Consensus 112 ~~l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 112 RVLQLALWQALEAH-----PNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHHcC-----CCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 45666777666541 27889999999999988888989888888899999999987754
No 43
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.96 E-value=0.17 Score=46.42 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
.|-+.|.+.+.+. .+.+|+.+++|++|+.+++++.|++.+|+++.+|.||.|-....
T Consensus 111 ~l~~~L~~~~~~~-----~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 111 LIQLGLWQQFAQY-----PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHHHHHHhC-----CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCc
Confidence 4555566655431 26789999999999998888999999998999999999987754
No 44
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.91 E-value=0.23 Score=45.85 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
...|-+.|.+.+.+. .+.+|+++++|++|+.+++.+.|++.+|++++||.||.|-...
T Consensus 110 ~~~l~~~L~~~~~~~-----~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 110 NRVIQLALLEQVQKQ-----DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred HHHHHHHHHHHHhcC-----CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 345666777776541 2678999999999998888899999899899999999999864
No 45
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.83 E-value=0.29 Score=45.25 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCC-C--cEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTED-G--SVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~-G--~~~~ad~VI~a~P~~~ 109 (307)
..+.+.|.+.+.+. .+.+++++++|++|+.+++++.|++.+ + .+++||.||.|-....
T Consensus 121 ~~l~~~L~~~~~~~-----~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 121 QVLLEALQEFLQSC-----PNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred HHHHHHHHHHHhcC-----CCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc
Confidence 46778887777541 257899999999999888888777753 2 3589999999987643
No 46
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.78 E-value=0.0037 Score=51.68 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
-..+.+.|...+.+ .+.+|+++++|++|+.++++|.|++.+|+++.||.||+|+...
T Consensus 81 ~~~v~~yl~~~~~~------~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 81 GEEVLDYLQEYAER------FGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHHH------TTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHHHhh------cCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 34455555555544 3677999999999999999999999999889999999999853
No 47
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.77 E-value=0.0042 Score=56.40 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEE-EecCCe---EEEEeCC--Cc-EEEcCEEEEecCh
Q 021822 35 EDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKI-NQSKNK---VIITTED--GS-VYHANYVIVTVSV 107 (307)
Q Consensus 35 ~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I-~~~~~~---v~V~~~~--G~-~~~ad~VI~a~P~ 107 (307)
++-|-| +||..+|.+.|.+.- +.+| ++++|++| ...+++ +.|+..+ +. .-.+|.||+|+|.
T Consensus 118 ~gl~sV--~GGN~qI~~~ll~~S---------~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 118 GGLWSV--EGGNWQIFEGLLEAS---------GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL 185 (368)
T ss_pred CCceEe--cCCHHHHHHHHHHHc---------cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence 345666 999999999999983 7789 99999999 444443 3565543 22 2468999999999
Q ss_pred hhh
Q 021822 108 GVL 110 (307)
Q Consensus 108 ~~l 110 (307)
..-
T Consensus 186 ~~~ 188 (368)
T PF07156_consen 186 QQS 188 (368)
T ss_pred ccc
Confidence 543
No 48
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.65 E-value=0.12 Score=48.30 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.+-+.|++.+.+ .|.+|+.+++|++|..+++++.+...+|.++.||.||.|.-..
T Consensus 109 ~fD~~L~~~a~~------~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEE------AGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHH------CCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 344456665554 4899999999999988777764334566689999999998664
No 49
>PRK10015 oxidoreductase; Provisional
Probab=96.62 E-value=0.19 Score=46.85 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=39.2
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EEeCCCcEEEcCEEEEecChh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-ITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+-+.|.+.+.+ .|.+|+.+++|+.|..+++++. |.. ++.++.||.||.|.-..
T Consensus 110 fd~~L~~~a~~------~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 110 LDPWLMEQAEQ------AGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHH------cCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 33346665554 4899999999999988777765 443 44579999999998764
No 50
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.48 E-value=0.67 Score=42.34 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhccCCCCCCC-CeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITD-PRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g-~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .| .+++ +++|++|+.+++++.|++.+|.++.||.||.|....
T Consensus 111 ~~l~~~L~~~~~~------~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 111 SLIERALWAALRF------QPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred HHHHHHHHHHHHh------CCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCC
Confidence 4677788887765 35 7788 999999998888899998888889999999998774
No 51
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.43 E-value=0.012 Score=54.29 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecChh
Q 021822 44 RGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 44 gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.-...+++.|.+.+.+ +|++|+++++|.+|+..+++ +.|.+.+++.+.||.||+|+--.
T Consensus 106 ~~a~~Vv~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 106 DKASSVVDALLEELKR------LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp --HHHHHHHHHHHHHH------HT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----S
T ss_pred CcHHHHHHHHHHHHHH------cCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCC
Confidence 4578999999999987 59999999999999998887 78888667789999999997643
No 52
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.41 E-value=0.74 Score=42.14 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.+-+.|.+.+.+. .|.+|+++++|++|..+++++.|++.+|..+.+|.||.|....
T Consensus 113 ~l~~~l~~~~~~~-----~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 113 DVGQRLFALLDKA-----PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHHHhcC-----CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 4555666655431 3689999999999998888898988888889999999998765
No 53
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.33 E-value=0.013 Score=54.01 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcE-EEcCEEEEecChhhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSV-YHANYVIVTVSVGVL 110 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VI~a~P~~~l 110 (307)
+..+..+|++.+++ .|++|++|++|+.|+.++++ ..+.+.+|++ +.|+.||.+.....+
T Consensus 152 ~~~~t~~l~e~a~~------~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 152 PGELTRALAEEAQA------NGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHH------cCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 77899999999988 49999999999999999885 5677788866 999999999998754
No 54
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.23 E-value=0.95 Score=41.55 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC-CCcEEEcCEEEEecChhhh
Q 021822 45 GFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE-DGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 45 G~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VI~a~P~~~l 110 (307)
....|.+.|.+.+.+. .+.+++.+++|+.|+.+++.+.|++. +|+++.||.||-|=.....
T Consensus 102 ~~~~l~~~L~~~~~~~-----~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 102 PRSDLLNALLEAARAL-----PNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred EhHHHHHHHHHHHhhC-----CCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 4788999999998762 23699999999999999999888888 9999999999988776543
No 55
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.21 E-value=0.016 Score=53.09 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..++..|++.+.+ |++|+.+++|++|+.+++++.|.+.+|+.+.||.||+|+....
T Consensus 135 ~~~~~~l~~~~~~-------G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-------RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-------CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 6888888888753 7899999999999988888989988887789999999998764
No 56
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.18 E-value=0.99 Score=41.26 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
...+-+.|.+.+.+ ++.++++..|++|+..++++.|.+.+|++++|+.||-+.++.
T Consensus 86 ~~~f~~~l~~~~~~-------~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 86 RADFYEFLLERAAA-------GGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHHHhhh-------CCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 56677777777763 678999999999999999888999999999999999998853
No 57
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.03 E-value=0.86 Score=42.61 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhccCCCCCC--CCeeecCCeeEEEEec-------CCeEEEEeCCCcEEEcCEEEEecChhhh
Q 021822 47 ETVVHYIANQFLSHNNNKIT--DPRLKLKKTVRKINQS-------KNKVIITTEDGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~--g~~i~l~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VI~a~P~~~l 110 (307)
..|-+.|.+.+.+. . +.+++++++|++|+.+ ++++.|++.+|++++||.||-|=.....
T Consensus 117 ~~l~~~L~~~~~~~-----~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 117 DNIQNSLYNRLQEY-----NGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHHHhC-----CCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 45667777776642 1 3689999999999752 4568899999999999999988876543
No 58
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.96 E-value=0.022 Score=52.14 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.-.+++.|.+.|.+ +|++|+++++|..|+..++. ..|.+.+|+++.+|+||+|+.-+
T Consensus 172 l~~vvkni~~~l~~------~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLES------LGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHh------cCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 45778899999987 79999999999999998875 46888899999999999999764
No 59
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.89 E-value=0.031 Score=49.95 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeCCCcEEEcCEEEEecChhhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTEDGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~a~P~~~l 110 (307)
...++..|++.+.+ .|++|+.+++|++|+.+++++ .|.+.+| .+.||.||+|+.+..-
T Consensus 136 p~~l~~~l~~~~~~------~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 136 PRALLKALEKALEK------LGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred hHHHHHHHHHHHHH------cCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 47899999988877 599999999999999887776 4777777 7999999999988653
No 60
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.64 E-value=0.057 Score=42.81 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=32.2
Q ss_pred ecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecC
Q 021822 71 KLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVS 106 (307)
Q Consensus 71 ~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P 106 (307)
+...+|+.|+..++++.|.+.+|..+.||+||+|+.
T Consensus 119 ~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 119 HVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred EEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 357899999999999999999998999999999985
No 61
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.62 E-value=0.046 Score=50.28 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
...+.++|.+.+.+ .|++|+++++|++|+..++++.|.+.+| ++.||.||+|+....
T Consensus 148 ~~~l~~aL~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQA------RGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHh------CCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 47899999988876 5899999999999998888888888777 799999999998753
No 62
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.56 E-value=0.068 Score=48.74 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC-cEEEcCEEEEecChh
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG-SVYHANYVIVTVSVG 108 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~a~P~~ 108 (307)
..-.+.+++.|.+.+.+ +|.+|+++++|++| +++++.|.+.++ +.+.||+||+|+.-.
T Consensus 82 S~~A~sVv~~L~~~l~~------~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAE------QGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGA 140 (376)
T ss_pred CCCHHHHHHHHHHHHHH------CCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCc
Confidence 46788999999999987 69999999999999 334577776543 468999999999764
No 63
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.32 E-value=0.069 Score=48.68 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
...+.+.|.+.+.+ .|++++.+++|++|+.+++++.|.+.+| ++.+|.||+|+...
T Consensus 144 p~~~~~~l~~~~~~------~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 144 AEKALRALQELAEA------HGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHH------cCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 35777788777665 5899999999999998888888887776 79999999999864
No 64
>PRK06847 hypothetical protein; Provisional
Probab=95.31 E-value=0.067 Score=48.70 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..+.+.|.+.+.+ .|.+|+++++|++|+.+++++.|.+.+|+++.+|.||.|.....
T Consensus 107 ~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAARA------AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHH------hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 4667777777765 48899999999999988888889888998899999999998753
No 65
>PRK07236 hypothetical protein; Provisional
Probab=95.17 E-value=0.076 Score=48.71 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 45 GFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 45 G~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+...+.+.|.+.+. +.+|+++++|++|+.+++++.|++.+|+++.+|.||.|=...
T Consensus 98 ~~~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 98 SWNVLYRALRAAFP--------AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred CHHHHHHHHHHhCC--------CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 56778888888763 568999999999999888899999999999999999996554
No 66
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.16 E-value=2.6 Score=38.72 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEe-cCCeEEEEe-CCCc--EEEcCEEEEecChhhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQ-SKNKVIITT-EDGS--VYHANYVIVTVSVGVL 110 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~-~~~~v~V~~-~~G~--~~~ad~VI~a~P~~~l 110 (307)
..+.+.|.+...+ .|.+++++++|++|+. +++++.|++ .+|+ +++||.||-|=.....
T Consensus 103 ~~l~~~Ll~~a~~------~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 103 TEVTRDLMAARLA------AGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHHh------CCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 4566677766554 4889999999999987 556666766 4664 5899998888776543
No 67
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.13 E-value=0.14 Score=47.22 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 44 RGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 44 gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.....+.+.|.+.+.+ .|.+|+++++|++|+.+++.+.|.+ +++++.+|.||+|+...
T Consensus 102 ~~a~~v~~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 102 DSAADVLDALLNELKE------LGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL 159 (400)
T ss_pred CCHHHHHHHHHHHHHH------CCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence 4568899999999876 5899999999999988777777877 45579999999999864
No 68
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.10 E-value=2.6 Score=38.45 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
...|-+.|.+.+.+. .+.+++.+++|++|..+++++.|.+.++ +++||.||.|=....
T Consensus 103 r~~L~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S 160 (374)
T PRK06617 103 NSDFKKILLSKITNN-----PLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS 160 (374)
T ss_pred HHHHHHHHHHHHhcC-----CCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc
Confidence 467888888887652 1367899999999999888898888776 899999999887653
No 69
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.01 E-value=0.088 Score=49.98 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhc----cCCCCCCC--CeeecCCeeEEEEec-CCeEEEEeCCCcEEEcCEEEEecChhhh
Q 021822 46 FETVVHYIANQFLS----HNNNKITD--PRLKLKKTVRKINQS-KNKVIITTEDGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 46 ~~~l~~~L~~~~~~----~~~~~~~g--~~i~l~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VI~a~P~~~l 110 (307)
...+++.|++.+.+ . | .+|+++++|+.|+.. ++.+.|++.+| ++.||.||+|+....+
T Consensus 210 ~~~L~~al~~~a~~~~~~~------G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVP------GKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhc------CCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 46888999888764 2 4 578999999999987 44578888888 7999999999987653
No 70
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.00 E-value=0.075 Score=49.23 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..|.+.|.+.++ +..++++++|++|+.++++|.|++.+|+++.+|.||.|--...
T Consensus 105 ~~l~~~L~~~~~--------~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 105 ADFLDALLKHLP--------EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHHhCC--------CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 357778888774 4569999999999998888999999998899999999987654
No 71
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.98 E-value=0.093 Score=47.77 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..++..+.+.+.+ .|.+|+++++|++|+.+++++.|.+.+| ++.+|.||+|+....
T Consensus 149 ~~~~~~~~~~~~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLARE------AGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHH------CCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 4666667666654 4899999999999999888888988887 799999999998753
No 72
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.95 E-value=0.078 Score=49.94 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
-..+++.|++.+.+ .|++|+.+++|++|+. ++.+.|++.+| ++.||.||+|+-..
T Consensus 182 P~~l~~~L~~~a~~------~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALE------LGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHH------cCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 45788888888766 5999999999999985 45577888777 69999999998764
No 73
>PRK07588 hypothetical protein; Provisional
Probab=94.83 E-value=0.097 Score=48.06 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..|.+.|.+.+. .+.+|+++++|++|+.+++++.|++.+|+++.+|.||.|-....
T Consensus 103 ~~l~~~L~~~~~-------~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 103 GDLAAAIYTAID-------GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHHHhhh-------cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 456667766654 25799999999999998889999999998899999999887653
No 74
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.80 E-value=0.11 Score=48.16 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
...+++.|++.+.+ .|++|+.+++|++|+.+++++ .|++.+| ++.+|.||+|+....
T Consensus 200 p~~~~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQ------LGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 45788888888766 599999999999999887775 4666655 789999999998753
No 75
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.80 E-value=0.12 Score=47.63 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
...+.+.|.+.+.+ .|.+|+.+++|++|+.+++++.|++.+|+++.||.||.|-....
T Consensus 111 ~~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 111 NRVVQDALLERLHD------SDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred hHHHHHHHHHHHhc------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 34677788887765 57899999999999998888999988998899999999987754
No 76
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.49 E-value=0.15 Score=47.19 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EEeCCC--cEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-ITTEDG--SVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VI~a~P~~ 108 (307)
+|.++|.+.+++ +|++|+.+++|++|..+++++. |.+.++ ..+.||+||+|+-..
T Consensus 264 RL~~aL~~~~~~------~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 264 RLEEALKHRFEQ------LGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHH------CCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 677778888876 6999999999999998888765 555565 379999999997765
No 77
>PRK06834 hypothetical protein; Provisional
Probab=94.17 E-value=0.2 Score=47.66 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..+-+.|.+.+.+ .|.+|+.+++|++|+.+++++.|++.+|+++.+|.||.|.-...
T Consensus 100 ~~le~~L~~~l~~------~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 100 NHIERILAEWVGE------LGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 4566667677665 48899999999999999889988888888899999999987653
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.17 E-value=0.16 Score=46.92 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC-----cEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG-----SVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VI~a~P~~~ 109 (307)
..++..|.+.+.+ .|++|+.+++|++|+.+++++.+.+.++ .++.+|.||+|+.+..
T Consensus 197 ~~~~~~l~~~a~~------~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACAR------LGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 4667788877766 5999999999999998777776654332 3689999999998864
No 79
>PRK05868 hypothetical protein; Validated
Probab=94.17 E-value=0.18 Score=46.14 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
.|.+.|.+.+. .|.+|+++++|+.|+.++++++|++.+|+++.||.||-|=....
T Consensus 106 ~L~~~l~~~~~-------~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S 160 (372)
T PRK05868 106 DLVELLYGATQ-------PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred HHHHHHHHhcc-------CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc
Confidence 45555555443 37889999999999988888999999998999999998887653
No 80
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.11 E-value=0.21 Score=47.40 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeEEEE---eCCCc--EEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKVIIT---TEDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~V~---~~~G~--~~~ad~VI~a~P~~~ 109 (307)
...|.++|++.+.+. .|++|+++++|+.|... +++|.|. +.+|+ ++.||.||+|.....
T Consensus 183 ~~~L~~aL~~~l~~~-----~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESH-----PNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhC-----CCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 568888898887531 37999999999999987 6678775 34453 589999999998875
No 81
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=93.96 E-value=0.19 Score=47.81 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCC-CeeecCCeeEEEEecCCe-EEEEeC---CCc--EEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITD-PRLKLKKTVRKINQSKNK-VIITTE---DGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g-~~i~l~~~V~~I~~~~~~-v~V~~~---~G~--~~~ad~VI~a~P~~~ 109 (307)
...+.++|++.+.+ .| .+|+++++|++|+.++++ |.|.+. +|+ ++.||.||+|.....
T Consensus 182 ~~~l~~aL~~~a~~------~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQK------QGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHh------CCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 57899999988876 45 599999999999986654 766543 353 589999999998864
No 82
>PRK07190 hypothetical protein; Provisional
Probab=93.80 E-value=0.25 Score=46.93 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
...+-+.|.+.+.+ +|.+|+.+++|+.|+.+++++.+.+.+|+++.||.||.|.....
T Consensus 108 q~~le~~L~~~~~~------~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 108 QSYVEKLLDDKLKE------AGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHHHH------CCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 44555566666655 58999999999999999888888888888899999999998754
No 83
>PRK06753 hypothetical protein; Provisional
Probab=93.78 E-value=0.22 Score=45.33 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..|.+.|.+.++ +.+|+++++|++|+.+++++.|++.+|+++.+|.||-|-....
T Consensus 98 ~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 98 QTLIDIIKSYVK--------EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHHHhCC--------CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 567777777764 4579999999999988888999999998899999999887653
No 84
>PRK06116 glutathione reductase; Validated
Probab=93.76 E-value=0.25 Score=46.33 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+|+++++|.+|+.++++ +.|.+.+|+++.+|.||+++..
T Consensus 209 ~~~~~l~~~L~~------~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 209 DIRETLVEEMEK------KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHH------CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 456666666665 48999999999999986555 7788888888999999999854
No 85
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.66 E-value=0.28 Score=44.82 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=43.2
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
+.+.+.+.+.+ .|.+++++++|++|+.+++++.|.+.+|+++.+|.||+++..
T Consensus 185 ~~~~l~~~l~~------~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 185 VSSRLQHRLTE------MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHh------CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 44555556654 488999999999999877778888889989999999999865
No 86
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.65 E-value=0.26 Score=45.65 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=67.5
Q ss_pred ecccccccCcccccccccCCcccccc-ccCC--CceeeeCCCC----HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEE
Q 021822 6 FYNDFEEAEPTRISSLKNTFPRQLME-DFGE--DSYFVADPRG----FETVVHYIANQFLSHNNNKITDPRLKLKKTVRK 78 (307)
Q Consensus 6 ~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~--~~~~~~~~gG----~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~ 78 (307)
-|-+++|..|++++.-+.-. .... .-.+ ...++ +.| ++.|.+.|.+.+.+. .|.+++++++|+.
T Consensus 137 lF~~Me~sed~~~i~~w~PL--vm~gR~~~e~vAat~~--~~GTDVnFG~LTr~l~~~l~~~-----~~~~~~~~~eV~~ 207 (488)
T PF06039_consen 137 LFPGMEFSEDPEQIAEWAPL--VMEGRDPSEPVAATRV--EEGTDVNFGALTRQLVEYLQKQ-----KGFELHLNHEVTD 207 (488)
T ss_pred CCCCcEEccCHHHHHhhCCe--ecCCCCCCCceeeeec--CCCccccHHHHHHHHHHHHHhC-----CCcEEEecCEeCe
Confidence 36788999998887655443 1111 1111 11222 344 789999999998763 3789999999999
Q ss_pred EEecCCe-EEEEeC---CC--cEEEcCEEEEecChhhhc
Q 021822 79 INQSKNK-VIITTE---DG--SVYHANYVIVTVSVGVLQ 111 (307)
Q Consensus 79 I~~~~~~-v~V~~~---~G--~~~~ad~VI~a~P~~~l~ 111 (307)
|.+.+++ |.|+.. +| .++.++.|++......|.
T Consensus 208 i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 208 IKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred eEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 9998776 887763 23 468999999998777653
No 87
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.56 E-value=0.29 Score=46.02 Aligned_cols=56 Identities=11% Similarity=0.256 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+|+++++|++|+..++++.+.+.+|+++.+|.||+++...
T Consensus 216 ~~~~~~l~~~l~~------~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 216 DEISDALSYHLRD------SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHHH------cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 3555666666665 4899999999999998777788877788889999999998753
No 88
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=93.53 E-value=0.34 Score=45.19 Aligned_cols=59 Identities=7% Similarity=0.000 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec--CCeE-EEEeC-CCcEEEcCEEEEecCh
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS--KNKV-IITTE-DGSVYHANYVIVTVSV 107 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~V~~~-~G~~~~ad~VI~a~P~ 107 (307)
.++...+++.|.+.+++ .|.+|+++++|++|..+ ++.+ .|... ++..+.++.||+|+-.
T Consensus 119 ~~~g~~l~~~L~~~a~~------~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 119 RGGGKALTNALYSSAER------LGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred cCCHHHHHHHHHHHHHH------cCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 46777899999998877 59999999999999876 3444 34443 3347899999999984
No 89
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.46 E-value=0.28 Score=45.05 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
-..|.+.|.+.+.+. .+.+++++++|++|+.+++++.|++.+|+++.+|.||.|.....
T Consensus 108 r~~l~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 108 RADIHLSLLEAVLDH-----PLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHHHhc-----CCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcCh
Confidence 345677777777541 14789999999999988888989888998899999999987654
No 90
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.36 E-value=0.29 Score=46.44 Aligned_cols=58 Identities=14% Similarity=0.355 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-CeEEEEe---CCCc--EEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NKVIITT---EDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v~V~~---~~G~--~~~ad~VI~a~P~~~ 109 (307)
...++++|++.+.+ .|++|+++++|++|+.++ ++|.|.+ .+|+ ++.||.||+|+....
T Consensus 177 p~~l~~aL~~~a~~------~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQ------NGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 57899999988876 599999999999999865 4566653 2342 589999999998764
No 91
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.34 E-value=0.26 Score=48.72 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..++++|.+.+.+ |++|+.+++|++|...+++|.|.+.+|..+.+|.||+|.....
T Consensus 408 ~~l~~aL~~~a~~-------Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-------QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-------CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 5788888888752 6899999999999988888989888887678999999998764
No 92
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.22 E-value=0.33 Score=42.45 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.++++ .+|++|+..++++.|.+.+|+++.||.||+|+...
T Consensus 57 ~~~~~~l~~~~~~------~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 57 PELMEKMKEQAVK------FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHH------cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 4677777777665 5889999 89999999888888888888889999999999863
No 93
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.20 E-value=0.36 Score=45.23 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
..+.+.+.+.+.+ .|.+++++++|++|+..++++.|.+.+|+++.+|.||+++..
T Consensus 207 ~~~~~~l~~~l~~------~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEG------RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHH------CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 3455555566654 489999999999999877777777778888999999999875
No 94
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.11 E-value=0.32 Score=45.79 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC---cEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG---SVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~a~P~~ 108 (307)
.+.+.+.+.+.+ .|.+|+++++|++|+.+++++.+.+.+| +++.+|.||+++...
T Consensus 214 ~~~~~l~~~l~~------~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 214 EISKLAERALKK------RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHH------cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 455566666655 4899999999999998777777776665 568999999998653
No 95
>PRK08013 oxidoreductase; Provisional
Probab=93.04 E-value=0.39 Score=44.25 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..|-+.|.+.+.+. .+.+|+++++|++|+.+++++.|++.+|+++++|.||-|-....
T Consensus 111 ~~l~~~L~~~~~~~-----~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 111 SVIHYALWQKAQQS-----SDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHHHHHHhcC-----CCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 46667777776541 26789999999999988888999988998999999998887653
No 96
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.04 E-value=0.38 Score=44.70 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEE-EeCCCc--EEEcCEEEEecCh
Q 021822 44 RGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVII-TTEDGS--VYHANYVIVTVSV 107 (307)
Q Consensus 44 gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V-~~~~G~--~~~ad~VI~a~P~ 107 (307)
.|+ .+.+.|.+.+.+ .|++|+++++|++++..++++.+ ...+|+ .+.+|.||+|+..
T Consensus 257 pG~-rL~~aL~~~l~~------~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 257 PGL-RLQNALRRAFER------LGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred chH-HHHHHHHHHHHh------CCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 355 788889888876 58999999999999988777653 344453 4899999999876
No 97
>PLN02507 glutathione reductase
Probab=93.02 E-value=0.41 Score=45.65 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.+.+.+.+ .|.+|++++.|++|+..++++.|.+.+|+++.+|.||+++...
T Consensus 244 ~~~~~~l~~~l~~------~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 244 DEMRAVVARNLEG------RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 3455555555654 4899999999999997777777888788889999999998753
No 98
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.94 E-value=0.22 Score=34.40 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG 93 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G 93 (307)
..+.+.+.+.+.+ .|.+|++++.|.+|+.++++++|++.||
T Consensus 40 ~~~~~~~~~~l~~------~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRK------RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHH------TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 4555556666655 4899999999999999988877888776
No 99
>PRK06185 hypothetical protein; Provisional
Probab=92.93 E-value=7.4 Score=35.74 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE---EEEeCCCc-EEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV---IITTEDGS-VYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v---~V~~~~G~-~~~ad~VI~a~P~~~ 109 (307)
..+.+.|.+.+.+. .+.+++.+++|++|..+++++ .+...+|+ ++.+|.||.|-....
T Consensus 108 ~~l~~~L~~~~~~~-----~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 108 WDFLDFLAEEASAY-----PNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHHHhhC-----CCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 45667777665431 267899999999999887764 34445664 689999999997653
No 100
>PRK09897 hypothetical protein; Provisional
Probab=92.93 E-value=0.37 Score=46.20 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhccCCCCCCC--CeeecCCeeEEEEecCCeEEEEeCC-CcEEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITD--PRLKLKKTVRKINQSKNKVIITTED-GSVYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g--~~i~l~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~a~P~ 107 (307)
....+.+.+.+++ .| ..++.+++|+.|+..++++.|++.+ |..+.||.||+|+.-
T Consensus 107 ~~~f~~l~~~a~~------~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 107 RDQFLRLVDQARQ------QKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHH------cCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 4556666666544 24 5788999999999988889888765 467899999999965
No 101
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.58 E-value=0.47 Score=44.63 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC--cEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG--SVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VI~a~P~~ 108 (307)
..+.+.+.+.+.+ .|.+|+++++|++|+.+++++.+.+.+| +++.+|.||+++...
T Consensus 211 ~~~~~~~~~~l~~------~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKK------KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHH------cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 3455566666655 4889999999999998877787777677 468999999998653
No 102
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=92.55 E-value=0.22 Score=45.49 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred ccccCcccccccccCC--cc-cccc-ccCC--CceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC
Q 021822 10 FEEAEPTRISSLKNTF--PR-QLME-DFGE--DSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK 83 (307)
Q Consensus 10 ~~~~~~~~~~s~~~~~--~~-~~~~-~~~~--~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~ 83 (307)
=-+|-+|+++|.-... |. ..+. .|-. .+++. ++|+.+|.++|++.- +.+|+||+.+..|+..+
T Consensus 157 K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P--~~Gyt~~~~~ml~~~---------~i~v~l~~~~~~~~~~~ 225 (377)
T TIGR00031 157 KQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLP--KGGYTKLFEKMLDHP---------LIDVKLNCHINLLKDKD 225 (377)
T ss_pred eeeCCChHHCCHHHeEecceEecCCCCcccccccccc--cccHHHHHHHHHhcC---------CCEEEeCCccceeeccc
Confidence 3478888888876543 11 1111 1211 34444 789999999999872 56899999888888655
Q ss_pred CeEEEEeCCCcEEEcCEEEEecChhhhc
Q 021822 84 NKVIITTEDGSVYHANYVIVTVSVGVLQ 111 (307)
Q Consensus 84 ~~v~V~~~~G~~~~ad~VI~a~P~~~l~ 111 (307)
+++.+.. + .+. +.||.|.|++.+-
T Consensus 226 ~~~~~~~--~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 226 SQLHFAN--K-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred cceeecc--c-ccc-CcEEEecCchHHH
Confidence 5455532 2 223 7899999998773
No 103
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.50 E-value=0.52 Score=44.48 Aligned_cols=54 Identities=11% Similarity=0.252 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+|+++++|++|+.+++++.|.+.+|+++.+|.||+++..
T Consensus 219 ~~~~~l~~~L~~------~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 219 DAAEVLEEVFAR------RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHHHHHH------CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC
Confidence 344455555544 488999999999998777778788778888999999999765
No 104
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.31 E-value=0.51 Score=45.19 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
...+.+.|.+.+.+ .|.+++++++|++|+..++.+.|.+.+|+.+.||.+|+|+...
T Consensus 266 ~~~l~~~l~~~l~~------~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 266 GSQLAANLEEHIKQ------YPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHH------hCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 34677888877765 5889999999999998877788888888889999999999874
No 105
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.19 E-value=0.59 Score=43.06 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=40.7
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
+.+.+.+.+.+ .|.+|+++++|++|+. ++.+.|.+.+|+++.+|.||+++..
T Consensus 188 ~~~~l~~~l~~------~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 188 VQRYLLQRHQQ------AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHHHHH------CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 34455555554 4899999999999986 4557788888988999999998865
No 106
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.19 E-value=0.51 Score=44.49 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCe--eecCCeeEEEEecCCeEEEEeCCC--c--EEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPR--LKLKKTVRKINQSKNKVIITTEDG--S--VYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~--i~l~~~V~~I~~~~~~v~V~~~~G--~--~~~ad~VI~a~P~~ 108 (307)
-..+.+.|.+.... .|.. |+++++|++|+..+++|.|++.++ . +..+|+||+|+...
T Consensus 110 ~~ev~~YL~~~a~~------fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 110 HREVLAYLQDFARE------FKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHHH------cCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 35677777766554 2434 999999999999888898887543 2 35799999999864
No 107
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.16 E-value=0.57 Score=44.86 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+++++++|.+|...++.+.|.+.+|+.+.||.||+|+...
T Consensus 266 ~~l~~~l~~~~~~------~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVKE------YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 4677888887766 5889999999999999877888888888889999999999884
No 108
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=92.13 E-value=0.59 Score=40.62 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC-cEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG-SVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~a~P~~ 108 (307)
..+-+.|.+.+.+ .|.+++++++|++|..+++++.+...++ .++.+|.||.|....
T Consensus 91 ~~l~~~l~~~~~~------~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 91 DAFDEQLAERAQE------AGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHH------cCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 4566677777665 5899999999999998888877665543 578999999999874
No 109
>PRK06996 hypothetical protein; Provisional
Probab=92.01 E-value=0.54 Score=43.32 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC---cEEEcCEEEEecC
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG---SVYHANYVIVTVS 106 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~a~P 106 (307)
...|-+.|.+.+.+ .|.+++.+++|+.|+.++++|.|++.+| +++.||.||-|-.
T Consensus 114 r~~l~~~L~~~~~~------~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 114 YGSLVAALARAVRG------TPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred hHHHHHHHHHHHHh------CCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 46788888888876 4789999999999998888999888754 5799999999965
No 110
>PRK06184 hypothetical protein; Provisional
Probab=91.96 E-value=0.53 Score=44.83 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEe---CCCcEEEcCEEEEecChhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITT---EDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~a~P~~~ 109 (307)
.+-+.|.+.+.+ .|.+|+++++|++|+.+++++.+++ .+++++.||.||.|.-...
T Consensus 110 ~le~~L~~~l~~------~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 110 RTERILRERLAE------LGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHH------CCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 344566666654 4789999999999999888887766 5566799999999987764
No 111
>PRK07846 mycothione reductase; Reviewed
Probab=91.90 E-value=0.67 Score=43.57 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=36.3
Q ss_pred CCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.+++++++|++|+.+++++.|.+.+|+++.+|.||+++...
T Consensus 220 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCc
Confidence 678999999999998777777888788889999999998663
No 112
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=91.89 E-value=0.73 Score=42.95 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=47.2
Q ss_pred ccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-eE-EEEeCCCcEEEcCEEEEe
Q 021822 30 MEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-KV-IITTEDGSVYHANYVIVT 104 (307)
Q Consensus 30 ~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v-~V~~~~G~~~~ad~VI~a 104 (307)
..+||..-+.++ .-|.+.|++.+.+...= -|+...||++|.+|..+++ ++ .|.. +|+++.|+.||..
T Consensus 216 lgryG~sPfLyP-~YG~GELpQ~FcRl~AV------~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 216 LGRYGKSPFLYP-LYGLGELPQAFCRLSAV------YGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp HCCCSSSSEEEE-TT-TTHHHHHHHHHHHH------TT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred HhccCCCCEEEE-ccCCccHHHHHHHHhhh------cCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 346776655555 78999999998866543 4999999999999998554 43 4554 7888999999954
No 113
>PLN02463 lycopene beta cyclase
Probab=91.74 E-value=0.65 Score=43.58 Aligned_cols=55 Identities=13% Similarity=0.312 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+-+.|.+.+.+ .|.+++ ..+|++|+..++++.|++.+|+++.||.||.|....
T Consensus 114 ~~L~~~Ll~~~~~------~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 114 KKLKSKMLERCIA------NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHHhh------cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 3556677777654 377775 679999999888899999999889999999999764
No 114
>PRK07045 putative monooxygenase; Reviewed
Probab=91.71 E-value=0.65 Score=42.51 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe--EEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK--VIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..|.+.|.+.+... .|.+++++++|+.|+.++++ +.|++.+|+++.+|.||.|-....
T Consensus 106 ~~l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 106 EQLRRLLLAKLDGL-----PNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHHHhcC-----CCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 45677777776431 37899999999999987665 468888898899999998887654
No 115
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=91.62 E-value=0.6 Score=44.59 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCC---Cc--EEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTED---GS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VI~a~P~~~ 109 (307)
..++..|+....+ .|++|+.+++|++|..+++.+.|.+.+ |+ ++.++.||.|+.++.
T Consensus 155 ~rl~~~l~~~A~~------~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAE------RGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHH------cCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4666677666655 499999999999999887777666543 53 589999999998853
No 116
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.55 E-value=0.63 Score=44.39 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC----cEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG----SVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VI~a~P~~~ 109 (307)
..++..|+....+ .|++|+.+++|++|..+++.+.|++.++ .++.++.||.|+.++.
T Consensus 155 ~rl~~~l~~~a~~------~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAE------RGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHH------CCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 5666777766665 5999999999999998877777766553 2489999999999854
No 117
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.22 E-value=0.94 Score=42.58 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=35.9
Q ss_pred CCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
+.++++++.|++|+.+++++.|.+.+|+++.+|.||+++..
T Consensus 223 gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 67899999999999877778788778888999999999975
No 118
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=91.10 E-value=0.71 Score=41.04 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec---CCeEEEEeCCCcEEEcCEEEEecChhhhc
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS---KNKVIITTEDGSVYHANYVIVTVSVGVLQ 111 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~---~~~v~V~~~~G~~~~ad~VI~a~P~~~l~ 111 (307)
.+-++++...+.. +|+.++-+..|..|... ++.+.|.|.+|..+.++.+|+|+.++..+
T Consensus 153 ~kslk~~~~~~~~------~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 153 AKSLKALQDKARE------LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHHHHHHHH------cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 3445566666655 69999999999999854 34688999999889999999999998654
No 119
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.00 E-value=0.81 Score=45.03 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
-..|.+.|++.+. ...++++++|++|+..+++++|++.+|+++.+|.||.|-....
T Consensus 193 R~~L~~~L~~alg--------~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 193 RMTLQQILARAVG--------EDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHHHHhhCC--------CCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 3467778877763 2347899999999998899999999998899999999987754
No 120
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.87 E-value=0.83 Score=42.85 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCc--EEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGS--VYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+|+++++|++++..++++.+.+.+|+ .+.+|.|++|+--
T Consensus 215 ei~~~~~~~l~~------~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 215 EISKELTKQLEK------GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred HHHHHHHHHHHh------CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence 555556666654 37889999999999998877888888876 6889999999965
No 121
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=90.72 E-value=0.69 Score=41.90 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
-..++..|++.+.+. .|++|+.+++|++|+.. .|.+.+| .+.||.||+|+-...
T Consensus 144 p~~~~~~l~~~~~~~-----~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQ-----HGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhc-----CCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 356777887776541 28999999999999753 5677777 578999999998753
No 122
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.59 E-value=1.1 Score=42.02 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
..+.+.+.+.+.+ .|.+++++++|++|+.+++++.|.+.+| ++.+|.||+++..
T Consensus 199 ~~~~~~l~~~l~~------~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 199 RDIADNIATILRD------QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 3455566666665 4899999999999998777777776666 5899999999754
No 123
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=90.56 E-value=0.87 Score=42.92 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe--CCC--cEEEcCEEEEecCh
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT--EDG--SVYHANYVIVTVSV 107 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~--~~G--~~~~ad~VI~a~P~ 107 (307)
.+|...+.+.|.+.+.+ .|.+|+++++|++|..+++++ .|.. .+| ..+.++.||+|+..
T Consensus 127 ~g~g~~l~~~l~~~~~~------~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 127 WGGGKALVNALYRSAER------LGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred cCCHHHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 35567888999888876 589999999999999876664 3443 234 35789999999864
No 124
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=90.55 E-value=0.68 Score=42.82 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe---CCCc--EEEcCEEEEecChhh
Q 021822 45 GFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT---EDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 45 G~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VI~a~P~~~ 109 (307)
+-..+++.|.+.+++ .|.+|+++++|+++..++++| .|.. .+|+ .+.|+.||+|+--..
T Consensus 139 ~g~~~~~~l~~~~~~------~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAEE------AGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHH------TTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHhh------cCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 567899999999987 689999999999999988774 2333 3565 478999999996644
No 125
>PRK14727 putative mercuric reductase; Provisional
Probab=90.47 E-value=1.1 Score=42.48 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.+.+.|.+.+.+ .|.+|+++++|++|+.+++++.|.+.+| ++.+|.||+++...
T Consensus 229 ~~~~~l~~~L~~------~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 229 LLGETLTACFEK------EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHHh------CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 455566666655 4899999999999998777777777666 68999999999774
No 126
>PTZ00052 thioredoxin reductase; Provisional
Probab=90.42 E-value=1.2 Score=42.56 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=42.5
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.+.+.+.+.+ .|.++++++.|++|+..++.+.|.+.+|+++.+|.||+++...
T Consensus 224 ~~~~l~~~l~~------~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 224 CSEKVVEYMKE------QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHH------cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 44556666655 4899999999999987666677777788889999999998763
No 127
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.29 E-value=1.2 Score=41.14 Aligned_cols=55 Identities=18% Similarity=0.047 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeE-EEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKV-IITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+...|++.+.+ .|++++.+++|++|+.. ++++ .|++.+| ++.++.||+++...
T Consensus 183 ~~l~~~l~~~a~~------~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADR------RGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHH------CCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 3566777777765 59999999999999865 4554 5777777 79999998887664
No 128
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=90.22 E-value=1.2 Score=41.86 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCC-cEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDG-SVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VI~a~P~~ 108 (307)
.+.+.+.+.+.+ .|.++++++.|++|+.++++ +.|.+.+| +.+.+|.||+++...
T Consensus 208 ~~~~~~~~~l~~------~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 208 MISETITEEYEK------EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHH------cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence 445555566654 48999999999999876444 67777777 568999999998753
No 129
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=90.20 E-value=1.1 Score=41.87 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-Ce---EEEEeCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NK---VIITTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~---v~V~~~~G~--~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+|+++++|++|..++ ++ +.+...+|+ .+.+|.||+|+-..
T Consensus 130 ~~l~~~l~~~~~~------~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 130 AEIVQKLYKKAKK------EGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHHHHH------cCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 4688888888876 589999999999999864 33 344444553 36899999998754
No 130
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=90.09 E-value=1.1 Score=43.55 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE---EEEeCCCc-EEEc-CEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV---IITTEDGS-VYHA-NYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v---~V~~~~G~-~~~a-d~VI~a~P~~ 108 (307)
..|++.|.+.+.+ .|++|+++++|++|..+++++ .+...++. .+.+ +.||+|+-..
T Consensus 217 ~~l~~~L~~~a~~------~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 217 NALVARLLKSAED------LGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 4577888888876 599999999999998766653 33333443 4788 9999998665
No 131
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=90.06 E-value=1.3 Score=42.16 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
..+.+.+.+.+++ .|.+|++++.|++|+.++++ ..|.+.+|+++.+|.||+++..
T Consensus 231 ~~~~~~l~~~L~~------~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 STLRKELTKQLRA------NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHHH------cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 4566677777765 48999999999999876544 5677677878999999998864
No 132
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=89.95 E-value=1 Score=43.13 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe---CCCc--EEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT---EDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VI~a~P~~~ 109 (307)
-..++..|+....+ .|++|+.+++|++|..+++++ .|++ .+|+ ++.|+.||.|+.++.
T Consensus 127 p~~l~~al~~~A~~------~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQE------HGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHH------cCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 35777788777766 599999999999999877764 2443 2343 689999999998763
No 133
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=89.84 E-value=1.1 Score=42.30 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCC--C--cEEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTED--G--SVYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VI~a~P~ 107 (307)
..+.+.+.+.+.+ .|.+|+++++|++|+.+++++.|.+.+ | +.+.+|.||+++..
T Consensus 224 ~~~~~~~~~~l~~------~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 224 EQVAKEAAKAFTK------QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHHHHH------cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 3455666666655 488999999999999877777666543 4 36899999999865
No 134
>PRK06475 salicylate hydroxylase; Provisional
Probab=89.82 E-value=1.3 Score=40.85 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEe---CCCcEEEcCEEEEecChhhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITT---EDGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~a~P~~~l 110 (307)
-..|.+.|.+.+.+. .+.+|+++++|++|+.+++++.|++ .+++++.+|.||-|=.....
T Consensus 106 r~~l~~~L~~~~~~~-----~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 106 RADLQSALLDACRNN-----PGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHHHHhc-----CCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 357778888777531 2678999999999998888887765 33457899999988877643
No 135
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.34 E-value=1.3 Score=41.74 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC--CCc--EEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE--DGS--VYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~--~G~--~~~ad~VI~a~P~ 107 (307)
..+.+.+.+.+.+ .|.+|+++++|++|+.+++++.+.+. +|+ ++.+|.||+++..
T Consensus 213 ~~~~~~l~~~l~~------~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYKK------LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHH------CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 3455666666655 48999999999999877666655543 563 6899999999764
No 136
>PRK14694 putative mercuric reductase; Provisional
Probab=88.97 E-value=1.7 Score=41.02 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.+.+.+.+ .|.+|+++++|.+|+.+++.+.+.+.++ ++.+|.||+++...
T Consensus 218 ~~~~~~l~~~l~~------~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 218 PAVGEAIEAAFRR------EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCC
Confidence 3566666666665 4899999999999997776666766555 79999999998653
No 137
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=88.91 E-value=1.6 Score=39.86 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
-..+.+.|.+.+.+ .|.+++ ..+|..|+.+ ++.+.|++.+|++++||.||.|.....
T Consensus 84 ~~~l~~~l~~~~~~------~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 84 STRLHEELLQKCPE------GGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHHh------cCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 35677888877765 367775 6689999877 566888888888899999999999865
No 138
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=88.86 E-value=1.4 Score=42.50 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe---CCC--cEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT---EDG--SVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~---~~G--~~~~ad~VI~a~P~~~ 109 (307)
..++.+++....+ .|++|+.+++|++|..+++++ .|++ .+| .++.||.||.|+.++.
T Consensus 149 ~rl~~al~~~A~~------~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKE------HGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHh------CCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 4667777776655 599999999999999887764 2443 233 3689999999998763
No 139
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=88.71 E-value=1.5 Score=44.32 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.|.+|++++.|++|..++....|.+.+|+++.+|.||+++...
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCC
Confidence 4899999999999986654456788899899999999999753
No 140
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=88.61 E-value=1.8 Score=41.37 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe---EEEEeCCCc--EEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK---VIITTEDGS--VYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~---v~V~~~~G~--~~~ad~VI~a~P~ 107 (307)
..+++.|.+.+.+ .|.+|+++++|++|..++++ +.+...+|+ ++.+|.||+|+-.
T Consensus 190 ~~l~~~L~~~~~~------~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 190 GYLVDGLLKNVQE------RKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred HHHHHHHHHHHHH------cCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 4688888888776 58999999999999876665 344444543 5889999999964
No 141
>PRK06370 mercuric reductase; Validated
Probab=88.44 E-value=1.9 Score=40.60 Aligned_cols=53 Identities=8% Similarity=0.166 Sum_probs=38.5
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEe--CC-CcEEEcCEEEEecCh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITT--ED-GSVYHANYVIVTVSV 107 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~--~~-G~~~~ad~VI~a~P~ 107 (307)
+.+.+.+.+.+ .|.+|+++++|.+|+..++++.|.+ .+ ++++.+|.||+++..
T Consensus 214 ~~~~l~~~l~~------~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 214 VAAAVREILER------EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 44555555554 4899999999999998766654443 23 356899999999865
No 142
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.36 E-value=2 Score=40.16 Aligned_cols=53 Identities=9% Similarity=0.218 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+++++++|++|+.+++++.+.. +|+++.+|.||+++..
T Consensus 199 ~~~~~~~~~l~~------~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 199 SVAALAKQYMEE------DGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHH------cCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 344444455544 4899999999999998766676654 5668999999998755
No 143
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=87.86 E-value=2.1 Score=41.48 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe-CCCcE--EEc-CEEEEecChh
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT-EDGSV--YHA-NYVIVTVSVG 108 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~-~~G~~--~~a-d~VI~a~P~~ 108 (307)
.+| ..|+..|.+.+.+ .|.+|+++++|++|..++++| .|.. .+|++ +.+ +.||+|+--.
T Consensus 214 ~~G-~~l~~~L~~~~~~------~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 214 AGG-QALAAGLFAGVLR------AGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred CCh-HHHHHHHHHHHHH------CCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 456 8999999998876 699999999999998755544 3322 24432 455 5899998664
No 144
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=87.80 E-value=2.1 Score=39.96 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+|+++++|++|+.+++...+.+.+ .++.||.||++++.
T Consensus 192 ~~~~~l~~~l~~------~gI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~d~vi~a~G~ 244 (444)
T PRK09564 192 EITDVMEEELRE------NGVELHLNEFVKSLIGEDKVEGVVTDK-GEYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHHHHHH------CCCEEEcCCEEEEEecCCcEEEEEeCC-CEEEcCEEEECcCC
Confidence 455566666655 488999999999997544434455544 47999999998875
No 145
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.78 E-value=1.9 Score=40.20 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+|+++++|++|+.+ . |.+.+|+++.+|.||.+++.
T Consensus 229 ~~~~~~~~~L~~------~gV~v~~~~~v~~v~~~--~--v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 229 ALRKYGQRRLRR------LGVDIRTKTAVKEVLDK--E--VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHH------CCCEEEeCCeEEEEeCC--E--EEECCCCEEEccEEEEccCC
Confidence 455666666665 59999999999999743 3 55678889999999998764
No 146
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=87.74 E-value=1.8 Score=41.74 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=42.4
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC--CC--cEEEcCEEEEecChhhh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE--DG--SVYHANYVIVTVSVGVL 110 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VI~a~P~~~l 110 (307)
+-+.|.+.+.+. .|.+|+++++|++|+.++++++|++. +| +++.||.||-|--....
T Consensus 115 le~~L~~~~~~~-----~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARF-----PHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhC-----CCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 344555554431 27899999999999999888887775 56 36899999998877543
No 147
>PRK08244 hypothetical protein; Provisional
Probab=87.74 E-value=1.8 Score=41.08 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC--CC-cEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE--DG-SVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~--~G-~~~~ad~VI~a~P~~ 108 (307)
.+-+.|.+.+.+ .|.+|+++++|++|+.+++++.|++. +| +++++|.||.|--..
T Consensus 101 ~le~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 101 ETEKVLEEHARS------LGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred HHHHHHHHHHHH------cCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 344445454443 48899999999999988888776653 46 468999999998664
No 148
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=87.53 E-value=0.87 Score=43.79 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=57.9
Q ss_pred cccccccCcccccccccCCccc-cc-cccCC----CceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEE
Q 021822 7 YNDFEEAEPTRISSLKNTFPRQ-LM-EDFGE----DSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKIN 80 (307)
Q Consensus 7 ~~~~~~~~~~~~~s~~~~~~~~-~~-~~~~~----~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~ 80 (307)
+|.+-||-. +..|+..+...+ .| .+|.+ .....+.-.-+.+|++-|.+.+++ .|++|++|++|++|.
T Consensus 181 ~w~t~FaF~-~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~------~GV~f~~~t~VtdL~ 253 (576)
T PRK13977 181 YWRTMFAFE-KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLED------HGVDFQYGTKVTDID 253 (576)
T ss_pred HHHHHHCCc-hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHh------CCCEEEeCCEEEEEE
Confidence 455555554 667777764222 11 01111 122222223478999999999988 599999999999999
Q ss_pred ec--CC-e-E-EEEeC-CC--cE---EEcCEEEEecChh
Q 021822 81 QS--KN-K-V-IITTE-DG--SV---YHANYVIVTVSVG 108 (307)
Q Consensus 81 ~~--~~-~-v-~V~~~-~G--~~---~~ad~VI~a~P~~ 108 (307)
.+ ++ + | .|... +| ++ ...|.||+|...-
T Consensus 254 ~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 254 FDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred EcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 85 32 2 2 24332 33 22 3689999998654
No 149
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.01 E-value=2.6 Score=40.05 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC---cEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG---SVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+++ .|.+|++++.+.+|+..++++.|++.+| +++.+|.||+++..
T Consensus 221 ~~~~~l~~~L~~------~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 221 DCANKVGEHMEE------HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHH------cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 344555556655 4899999999999987766666666555 36899999999875
No 150
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=87.00 E-value=1.9 Score=39.00 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
+.+.+.+.+.+ .|.+++++++|++|+.. .|.+.+|+++.+|.||++++.
T Consensus 193 ~~~~~~~~l~~------~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 193 VRRLVLRLLAR------RGIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHH------CCCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCC
Confidence 34444455544 48999999999999633 456678888999999999875
No 151
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=86.96 E-value=2.4 Score=41.22 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe--CCCc-EEEcC-EEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT--EDGS-VYHAN-YVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~--~~G~-~~~ad-~VI~a~P~~ 108 (307)
..|++.|.+.+.+ .|.+|+++++|++|..+++++ .|.. .+++ .+.++ .||+|+...
T Consensus 214 ~~l~~~L~~~~~~------~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 214 NALAARLAKSALD------LGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGF 274 (574)
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCc
Confidence 5688888888776 589999999999999877754 2433 3343 36775 799988654
No 152
>PRK13748 putative mercuric reductase; Provisional
Probab=86.80 E-value=2.6 Score=40.78 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+|+++++|++|+.+++.+.+.+.++ ++.+|.||+++...
T Consensus 310 ~~~~~~l~~~l~~------~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 310 PAIGEAVTAAFRA------EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence 3555666666655 4899999999999987777777776665 69999999998653
No 153
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=86.78 E-value=2 Score=41.30 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-----CeEEEEeCC-Cc--EEEcCEEEEecChhhhcc
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-----NKVIITTED-GS--VYHANYVIVTVSVGVLQS 112 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-----~~v~V~~~~-G~--~~~ad~VI~a~P~~~l~~ 112 (307)
-.++.+.|.+-.+.- | |...|++|++|++|+..+ ++|.|++.+ |+ +..+|+||+|+.......
T Consensus 83 ~~~v~~Yl~~Ya~~f--~--L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 83 HSEVLEYLESYAEHF--G--LRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp HHHHHHHHHHHHHHT--T--GGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCES
T ss_pred HHHHHHHHHHHHhhh--C--CcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCC
Confidence 356666555444320 0 456799999999999764 368888764 43 357999999998765443
No 154
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=86.66 E-value=2.5 Score=43.08 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=39.9
Q ss_pred HHHHHhhhccCCCCCCCCeeecCCeeEEEEecC--CeEEEEeCCCcEEEcCEEEEecChh
Q 021822 51 HYIANQFLSHNNNKITDPRLKLKKTVRKINQSK--NKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 51 ~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.|.+.+.+ .|.+|++++.|++|..++ ....|.+.+|+.+.+|.||++++..
T Consensus 191 ~~l~~~L~~------~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 191 EQLRRKIES------MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHHH------CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 344555554 589999999999998653 2356778899899999999999653
No 155
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=86.55 E-value=2.4 Score=39.36 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=38.2
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.+.+.+.+.+ .|.+++++++|.+|+.++. + +.+.+|+++.+|.||++++..
T Consensus 181 ~~~~~~~~l~~------~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 181 MNQIVEEELKK------HEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHH------cCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCcc
Confidence 44445555554 4889999999999986543 3 455678889999999998763
No 156
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=86.45 E-value=2.8 Score=39.50 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC---CCcEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE---DGSVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~---~G~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+|+++++|++|+.+++.+.+.+. +++++.+|.||+++..
T Consensus 208 ~~~~~l~~~l~~------~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 208 EISAAVEEALAE------EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHH------cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 344555555554 48999999999999987666555543 2357899999999865
No 157
>PRK11445 putative oxidoreductase; Provisional
Probab=86.27 E-value=3.2 Score=37.52 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=35.9
Q ss_pred CCeeecCCeeEEEEecCCeEEEEe-CCCc--EEEcCEEEEecChhh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITT-EDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VI~a~P~~~ 109 (307)
|.++++++.|++|+.+++++.|++ .+|+ ++.||.||.|.....
T Consensus 112 gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 112 SVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 789999999999998888888875 4664 589999999987753
No 158
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.18 E-value=3 Score=39.41 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC---C--CcEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE---D--GSVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~---~--G~~~~ad~VI~a~P~~ 108 (307)
.+.+.+.+.+.+ .|.+|+++++|++|+.+++++.+.+. + ++.+.+|.||+++...
T Consensus 216 ~~~~~l~~~l~~------~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTK------QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHh------cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 455666666665 48999999999999876666655432 2 3468999999998653
No 159
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=85.64 E-value=3.7 Score=38.65 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC--cEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG--SVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VI~a~P~ 107 (307)
.+.+.|.+.+.+ .|.+|+++++|++|+.+++.+.+.. +| +++.+|.||+++..
T Consensus 212 e~~~~l~~~L~~------~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 212 DIAHILREKLEN------DGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHH------CCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCC
Confidence 455666666665 4899999999999987666666654 34 35899999999975
No 160
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=85.46 E-value=1.7 Score=38.64 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC---CCc--EEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE---DGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~---~G~--~~~ad~VI~a~P~~~ 109 (307)
-..+-+.|.+.+.+ .|.+|+++++|+.++.+++++.+.+. +|+ ++.||.||-|-....
T Consensus 110 r~~l~~~L~~~~~~------~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 110 RPELDRALREEAEE------RGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHH------HTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHHHhhhhhhhh------hhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 45677788887766 37899999999999998888654443 343 689999999887754
No 161
>PLN02697 lycopene epsilon cyclase
Probab=85.28 E-value=3.1 Score=39.92 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-ITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..+.+.|.+.+.+ .|.++ ++++|++|+.+++++. +.+.+|.++.||.||.|.....
T Consensus 192 ~~L~~~Ll~~a~~------~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVE------SGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHh------cCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 4566778877765 37777 7889999998877764 4556788899999999998865
No 162
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=85.23 E-value=3.2 Score=37.78 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhccCCCCCCC-CeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITD-PRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g-~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..+++.|++.+.+ +| ..+..+++|..++..++.+.|.+.+|+ +.+|.||+|+-...
T Consensus 156 ~~~~~~l~~~~~~------~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEE------LGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHh------cCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 5889999988877 57 567779999999985345788888885 99999999998764
No 163
>PRK06126 hypothetical protein; Provisional
Probab=85.07 E-value=2.7 Score=40.46 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeC---CCc--EEEcCEEEEecChhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTE---DGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~---~G~--~~~ad~VI~a~P~~~ 109 (307)
.|-+.|.+.+.+. .+.+|+++++|++|+.+++++.+++. +|+ ++.+|.||.|--...
T Consensus 127 ~l~~~L~~~~~~~-----~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 127 YLEPILLEHAAAQ-----PGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred HHHHHHHHHHHhC-----CCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 3455566655431 26799999999999998888766553 464 589999999987754
No 164
>PRK07121 hypothetical protein; Validated
Probab=84.81 E-value=3.9 Score=38.84 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-CeE-EEEeC-CCc--EEEc-CEEEEecChh
Q 021822 45 GFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NKV-IITTE-DGS--VYHA-NYVIVTVSVG 108 (307)
Q Consensus 45 G~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~V~~~-~G~--~~~a-d~VI~a~P~~ 108 (307)
+-..+.+.|.+.+.+ .|.+|+++++|++|..++ +++ .|... +|+ .+.+ +.||+|+-..
T Consensus 175 ~g~~~~~~L~~~~~~------~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 175 GGAMLMDPLAKRAAA------LGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred chHHHHHHHHHHHHh------CCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 345788899888876 589999999999998764 343 34332 333 4778 9999999754
No 165
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=84.76 E-value=4 Score=38.54 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEe-cCCeE-EEEeCCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQ-SKNKV-IITTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~-~~~~v-~V~~~~G~--~~~ad~VI~a~P~~ 108 (307)
.+.+.+.+.+.+ .|.+|+++++|++|+. .++++ .+.+.+|+ ++.+|.||+++...
T Consensus 222 ~~~~~l~~~l~~------~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 222 ELSKEVARLLKK------LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHh------cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 455556666655 4899999999999986 23444 34445663 58999999999764
No 166
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=3 Score=36.99 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..|.++|.+.... .+.++.. ..|.+++..++...|++.+|+ +.+++||+|+....
T Consensus 61 ~~L~~~~~~~a~~------~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 61 PELMEQMKEQAEK------FGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHHhh------cCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 4777888877754 4777777 788888887767789998886 99999999998854
No 167
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=84.66 E-value=2.6 Score=38.85 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCc-EEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGS-VYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VI~a~P~~ 108 (307)
-.++.+...+.+++ +|.+|+++++|++|+.+. |++.+|+ .+.++.+|=|+...
T Consensus 208 ~~~l~~~a~~~L~~------~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 208 PPKLSKYAERALEK------LGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CHHHHHHHHHHHHH------CCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCc
Confidence 34555555556655 699999999999999764 5556776 49999999998663
No 168
>PRK06175 L-aspartate oxidase; Provisional
Probab=84.17 E-value=3.9 Score=38.23 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEE-eCCCc--EEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IIT-TEDGS--VYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~-~~~G~--~~~ad~VI~a~P~ 107 (307)
..+++.|.+.+.+. .|.+|+++++|++|..+++++ .|. ..+|+ .+.|+.||+|+-.
T Consensus 128 ~~l~~~L~~~~~~~-----~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKR-----KNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 46788888776531 378999999999998766653 222 22443 5789999999976
No 169
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=84.02 E-value=3.7 Score=38.41 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+++++++|++|+. . .|.+.+|+++.+|.||++++.
T Consensus 190 ~~~~~l~~~l~~------~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 190 DMNQPILDELDK------REIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHh------cCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 445556666655 4899999999999973 2 355567878999999999875
No 170
>PRK07538 hypothetical protein; Provisional
Probab=84.01 E-value=3.4 Score=38.24 Aligned_cols=58 Identities=7% Similarity=0.071 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhccCCCCCCC-CeeecCCeeEEEEecCCeEEEEeCCC-----cEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITD-PRLKLKKTVRKINQSKNKVIITTEDG-----SVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g-~~i~l~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VI~a~P~~~ 109 (307)
..|-+.|.+.+.+. +| ..|+++++|++|+.+++++.+.+.++ +++.||.||-|-....
T Consensus 102 ~~l~~~L~~~~~~~-----~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 102 GELQMLLLDAVRER-----LGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred HHHHHHHHHHHHhh-----cCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 35555666655321 24 46999999999998877765555432 4789999998887654
No 171
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=83.65 E-value=3.7 Score=37.46 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=44.8
Q ss_pred ccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC-cEEEcCEEEE
Q 021822 32 DFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG-SVYHANYVIV 103 (307)
Q Consensus 32 ~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~ 103 (307)
+|+...+..+ ..|.+.|++..++.-.= -|++..||+++.+|....++..+...+| +...+..+|+
T Consensus 218 ~yg~~~ylyP-~yGlgEL~QgFaRlsAv------yGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~ 283 (440)
T KOG1439|consen 218 RYGKSPYLYP-LYGLGELPQGFARLSAV------YGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVIC 283 (440)
T ss_pred hcCCCcceec-ccCcchhhHHHHHHhhc------cCceeecCCceeeeeccCCccEEEEecCCceeecceEEe
Confidence 5555555555 79999999998876432 4999999999999999655544444444 3445655444
No 172
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=83.30 E-value=4.1 Score=39.68 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeC-CCc--EEEc-CEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTE-DGS--VYHA-NYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~-~G~--~~~a-d~VI~a~P~~ 108 (307)
..|++.|.+.+.+ .|.+|+++++|++|..+++++ .|... +|+ .+.+ +.||+|+-..
T Consensus 221 ~~l~~aL~~~~~~------~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~ 281 (578)
T PRK12843 221 NALIGRLLYSLRA------RGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGF 281 (578)
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCc
Confidence 3688888888876 589999999999998766654 24333 443 3665 6899998664
No 173
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=82.73 E-value=5.7 Score=36.49 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=32.0
Q ss_pred CCeeecCCeeEEEEecCCeE-EEEeCCCcEEEcCEEEEecCh
Q 021822 67 DPRLKLKKTVRKINQSKNKV-IITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~a~P~ 107 (307)
+-+| ...+|+.|..+++++ .|.+.+|+.+.+|.||+|+..
T Consensus 110 nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 110 NLTI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TEEE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CeEE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 4455 467999999988885 699999999999999999977
No 174
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=81.35 E-value=5 Score=38.89 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe-CCCc--EEEcC-EEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT-EDGS--VYHAN-YVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~-~~G~--~~~ad-~VI~a~P~~~ 109 (307)
..|++.|.+.+.+ .|.+|+++++|++|..++++| .|.. .+|+ .+.++ .||+|+--..
T Consensus 208 ~~l~~~l~~~~~~------~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALA------AGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 4678888888776 589999999999999876654 2333 2453 36784 7999986643
No 175
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=80.79 E-value=3.3 Score=40.33 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=51.9
Q ss_pred ceeeeCCCCH--HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-EEEEeCCCcEEEcCEEEEecChhh
Q 021822 37 SYFVADPRGF--ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-VIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 37 ~~~~~~~gG~--~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
.+|++-.|-| ..+..+|+....+ +|..|.-|++|++|....++ +.|++..| .+.+..||-|+.++.
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~------~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASA------LGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHh------cCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 3555433434 4788899888876 79999999999999986554 67999888 688999999998864
No 176
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=80.48 E-value=6.4 Score=38.29 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-E---EeCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-I---TTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+ .|.+|+.+++|++|..+++++. | ...+|+ .+.|+.||+|+-..
T Consensus 135 ~~i~~~L~~~~~~------~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRR------YGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhh------CCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 4688888887765 5889999999999987666532 2 334564 47999999999774
No 177
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=80.27 E-value=6.4 Score=38.21 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEE---eCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IIT---TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~---~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+ .|.+|..+++|+++..++++| .|. ..+|+ .+.|+.||+|+--.
T Consensus 119 ~~i~~~L~~~~~~------~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 119 HAILHTLYQQNLK------ADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHHHHHHHHHHh------CCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 3688888888765 588999999999998766654 232 23564 47899999999765
No 178
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=80.24 E-value=3.1 Score=37.68 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
.|.+++.+ +|++|+.+++ .|.+.+|+++.+|++|+|+....
T Consensus 67 ~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 67 AGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred cCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 37888775 8999998776 45557887899999999997653
No 179
>PRK08401 L-aspartate oxidase; Provisional
Probab=79.97 E-value=5.8 Score=37.44 Aligned_cols=55 Identities=5% Similarity=0.053 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeCCCcEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..+.+.|.+.+.+ .|.++..+ +|+.|..+++++ .|.. +|+.+.++.||+|+-...
T Consensus 120 ~~i~~~L~~~~~~------~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARE------LGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHh------cCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 4788889888876 58888876 788887766665 3444 566789999999997753
No 180
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=79.74 E-value=6.7 Score=38.03 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEE---eCCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IIT---TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~---~~~G~--~~~ad~VI~a~P~~ 108 (307)
.|.+.|.+.+.+ .|.+|+.+++|++|..+++++ .|. ..+|+ .+.|+.||+|+-..
T Consensus 130 ~i~~~L~~~~~~------~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 130 ALLHTLYEQCLK------LGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHH------cCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 577888887765 489999999999998876654 232 24564 47899999999764
No 181
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=79.69 E-value=7.7 Score=38.20 Aligned_cols=57 Identities=9% Similarity=-0.048 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC--CeE-EEEe---CCCc--EEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK--NKV-IITT---EDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v-~V~~---~~G~--~~~ad~VI~a~P~~~ 109 (307)
..++..|++...+ .|++|+.+++|++|..++ +++ .|.. .+|+ ++.+|.||+|+.+..
T Consensus 232 ~rl~~al~~~A~~------~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAAL------AGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHh------CCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 5788888888776 599999999999998763 443 3333 2444 579999999998863
No 182
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=79.67 E-value=4.2 Score=37.99 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=34.7
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeC-CCcEEE--cCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTE-DGSVYH--ANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~-~G~~~~--ad~VI~a~P~~ 108 (307)
.|.++++++.|++|+.+++.+.+... +|+++. ||++|+|+...
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 37889999999999988887877653 355666 99999999874
No 183
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=79.58 E-value=7.1 Score=33.70 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-eE-EEEeC-----------CCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-KV-IITTE-----------DGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v-~V~~~-----------~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+...+ .|.+|+++++|+.|..+++ ++ .|... +..++.|+.||.|+-..
T Consensus 104 ~~l~~~L~~~A~~------~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAID------AGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHH------cCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 6788888888776 5999999999999987655 33 22211 12368999999998754
No 184
>PTZ00058 glutathione reductase; Provisional
Probab=79.49 E-value=8 Score=37.49 Aligned_cols=54 Identities=24% Similarity=0.379 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-eEEEEeCCC-cEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-KVIITTEDG-SVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v~V~~~~G-~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ .|.+|++++.|.+|+..++ ++.+...++ +++.+|.||+++..
T Consensus 279 ~i~~~l~~~L~~------~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 279 TIINELENDMKK------NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHHH------CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 455566666655 4899999999999987643 465554444 46899999999864
No 185
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=79.45 E-value=6.2 Score=36.23 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEe-cCCeEEEEeC-CCc--EEEcCEEEEecChhh
Q 021822 45 GFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQ-SKNKVIITTE-DGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 45 G~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~-~~~~v~V~~~-~G~--~~~ad~VI~a~P~~~ 109 (307)
|...+.+.|.+.+.+ .|..+++++++++|.. +++++.|++. +|+ ++++|.||-|=....
T Consensus 101 ~~~~l~~~L~~~~~~------~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 101 GQTEVTRDLMEAREA------AGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred CHHHHHHHHHHHHHh------cCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence 455777778877765 4789999999988865 4556667664 775 588998888776653
No 186
>PRK12839 hypothetical protein; Provisional
Probab=78.92 E-value=8.1 Score=37.57 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeE---EEEeCCCc-EE-EcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKV---IITTEDGS-VY-HANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v---~V~~~~G~-~~-~ad~VI~a~P~~ 108 (307)
..|+..|++.+.+ .|.+|+++++|++|..+ ++++ .+...+|+ .+ .++.||+|+-..
T Consensus 214 ~~l~~~L~~~a~~------~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf 275 (572)
T PRK12839 214 TALTGRLLRSADD------LGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGF 275 (572)
T ss_pred HHHHHHHHHHHHH------CCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCc
Confidence 4577788877766 58999999999999765 3443 33444554 23 458999998654
No 187
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=78.04 E-value=5 Score=37.25 Aligned_cols=42 Identities=17% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCC-CcEEE--cCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTED-GSVYH--ANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~-G~~~~--ad~VI~a~P~ 107 (307)
.|.+++++++|++|+..++.+.+...+ ++++. ||+||+|+..
T Consensus 57 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 57 RGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred cCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC
Confidence 378899999999999888777776543 45677 9999999986
No 188
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=77.90 E-value=8.7 Score=37.06 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=40.3
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEe--CCCc-EEEcCEEEEecChhh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITT--EDGS-VYHANYVIVTVSVGV 109 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~--~~G~-~~~ad~VI~a~P~~~ 109 (307)
+-+.|.+.+.+. .+.+|+++++|++|+.+++++.++. .+|. ++.+|.||.|.....
T Consensus 127 le~~L~~~~~~~-----~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 127 VEGYLVERAQAL-----PNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARS 185 (547)
T ss_pred HHHHHHHHHHhC-----CCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCc
Confidence 444555555431 2578999999999999888876654 3454 689999999987653
No 189
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.89 E-value=8.6 Score=36.35 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=32.3
Q ss_pred CeeecCCeeEEEEecCCeEEEEeCC--C--cEEEcCEEEEecChh
Q 021822 68 PRLKLKKTVRKINQSKNKVIITTED--G--SVYHANYVIVTVSVG 108 (307)
Q Consensus 68 ~~i~l~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VI~a~P~~ 108 (307)
.+|+++++|++|+..++++.|.+.+ | +++.+|.||+++...
T Consensus 229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 6799999999999877777666543 3 358999999998763
No 190
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=77.64 E-value=2.8 Score=38.47 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=46.3
Q ss_pred CCCHHH-HHHHHH----HhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 43 PRGFET-VVHYIA----NQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 43 ~gG~~~-l~~~L~----~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
++-|+. |++.|. +.+++ -|.+|+-|+.|+++......+.+.+.||.++..|.||+++..
T Consensus 384 k~nm~kiLPeyls~wt~ekir~------~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRK------GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHh------cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 455664 445554 33443 489999999999999988889999999999999999999854
No 191
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=77.25 E-value=45 Score=32.05 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCC---Cc--EEEcCEEEEecChhhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTED---GS--VYHANYVIVTVSVGVL 110 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VI~a~P~~~l 110 (307)
+|+-..+....+ -|++|...++|+++..+++-+.|...| |+ ++.|+.||.|+.++.-
T Consensus 165 RLv~~~a~~A~~------~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 165 RLVAANARDAAE------HGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHh------cccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 666666666555 399999999999999998844455443 44 4789999999988753
No 192
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.11 E-value=8.7 Score=37.93 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=38.2
Q ss_pred HHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe---CCCc--EEEcCEEEEecChh
Q 021822 50 VHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT---EDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 50 ~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VI~a~P~~ 108 (307)
.+.|.+.+.+ .|.+|+++++|++|..++++| .|.. .+|+ .+.|+.||+|+--.
T Consensus 173 ~~~L~~~~~~------~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 173 YQALSRQIAA------GTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHHHHHHh------cCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 3666666654 489999999999998766654 2333 2454 47899999999764
No 193
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=76.71 E-value=10 Score=37.06 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-CeE-EEEe-CCCc--EEEcC-EEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NKV-IITT-EDGS--VYHAN-YVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~V~~-~~G~--~~~ad-~VI~a~P~~~ 109 (307)
...++..|.+.+.+ .|.+|+++++|++|..++ ++| .|.. .+|+ .+.++ .||+|+--..
T Consensus 212 g~~~~~~l~~~~~~------~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 212 GQSLVARLRLALKD------AGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred cHHHHHHHHHHHHh------CCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 34566667666655 589999999999999864 444 2333 2443 36787 6999986643
No 194
>PRK07804 L-aspartate oxidase; Provisional
Probab=76.49 E-value=8.5 Score=37.14 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-e---EEEE-----eCCC-cEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-K---VIIT-----TEDG-SVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~---v~V~-----~~~G-~~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+ .|.+|+.+++|++|..+++ + +.+. ..+| ..+.++.||+|+-..
T Consensus 144 ~~i~~~L~~~~~~------~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRA------DPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHh------CCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 4688888888865 5889999999999987653 3 3333 1233 357899999999764
No 195
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=76.46 E-value=7.8 Score=35.39 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+-+.|.+.+. ..|+++++|++|+ .+++.+ .+|+++.||.||-+.+..
T Consensus 89 ~~f~~~l~~~l~---------~~i~~~~~V~~v~--~~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 89 TRFHEGLLQAFP---------EGVILGRKAVGLD--ADGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHHHhhc---------ccEEecCEEEEEe--CCEEEE--CCCCEEEeeEEEECCCCC
Confidence 566777777663 2389999999993 455555 688899999999999875
No 196
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=76.08 E-value=8.6 Score=35.37 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCC-CcEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTED-GSVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~a~P~~ 108 (307)
.+-+.|++...+ .|.+++.+++|+.+..+++++.+.... +.++.++.||.|.-+.
T Consensus 96 ~fd~~La~~A~~------aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 96 KFDKWLAERAEE------AGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred HhhHHHHHHHHH------cCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 444456656555 499999999999999998876544433 3578999999999654
No 197
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=76.04 E-value=12 Score=37.01 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe---EEEEe-CCCc--EEEcCEEEEecChh
Q 021822 44 RGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK---VIITT-EDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 44 gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~---v~V~~-~~G~--~~~ad~VI~a~P~~ 108 (307)
++-..|...|.+.+.+ .|.+|+.+++|++|..++++ +.+.. .+|+ .+.|+.||+|+-..
T Consensus 155 ~tG~~l~~~L~~~~~~------~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~ 219 (657)
T PRK08626 155 GTGHTMLYAVDNEAIK------LGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGY 219 (657)
T ss_pred CcHHHHHHHHHHHHHh------CCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence 3344677788887765 58999999999999987665 33433 4664 36899999999754
No 198
>PLN02546 glutathione reductase
Probab=75.79 E-value=12 Score=36.35 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-CeEEEEeCCCcEEEcCEEEEecChh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.+.+.+.+.+ .|.+|++++.|.+|+..+ +.+.|.+.+++...+|.||+++...
T Consensus 295 ~~~~l~~~L~~------~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 295 VRDFVAEQMSL------RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HHHHHHHHHHH------CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 33445555554 489999999999998654 4466666666445589999998653
No 199
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=75.55 E-value=8.6 Score=36.53 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EEeCC-C--cEEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-ITTED-G--SVYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~~~~-G--~~~~ad~VI~a~P~~~ 109 (307)
..|.+.|.+.+.+. .+.+|+.+++|++|..+++++. |...+ + ..+.++.||+|+-...
T Consensus 128 ~~l~~~L~~~~~~~-----~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNH-----PNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhc-----CCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 46888888887642 3789999999999987666543 43322 3 3579999999997753
No 200
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=75.51 E-value=8.9 Score=37.01 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-E-EEE--e-CCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-V-IIT--T-EDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v-~V~--~-~~G~--~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+|+++++|+++..++++ + .|. . .+|+ .+.|+.||+|+-..
T Consensus 134 ~~i~~~L~~~~~~------~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIK------ERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhc------CCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4678888887765 48999999999999876554 4 232 2 4564 47899999999764
No 201
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=75.45 E-value=8.2 Score=35.20 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.|.+++++++|++|+.++..+ .+ +|+.+.||++|+|+...
T Consensus 71 ~gv~~~~~~~V~~id~~~~~v--~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 71 FNLRLFPHTWVTDIDAEAQVV--KS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred CCCEEECCCEEEEEECCCCEE--EE-CCeEEeCCEEEECCCCC
Confidence 378999999999999876533 33 56689999999999864
No 202
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=74.95 E-value=5.9 Score=35.78 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC----eEEEEeC----CCcEEEcCEEEEecC
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN----KVIITTE----DGSVYHANYVIVTVS 106 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~----~v~V~~~----~G~~~~ad~VI~a~P 106 (307)
....+.|.-.+.+ ++..++++++|++|+...+ .+.|++. +++++.|+.||+++.
T Consensus 95 ~ef~dYl~Wva~~------~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 95 REFNDYLRWVAEQ------LDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHHHHHHHCC------GTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred HHHHHHHHHHHHh------CCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 4444555444333 4556999999999998754 3778773 345789999999886
No 203
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=74.85 E-value=7.7 Score=36.23 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=37.7
Q ss_pred CCeeecCCeeEEEEecCCe--EEEEeCCCcEEEcCEEEEecChhhh
Q 021822 67 DPRLKLKKTVRKINQSKNK--VIITTEDGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~a~P~~~l 110 (307)
|.++++++.+.+++.+.++ ..|.+.+|+++.||.||+-+-...+
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 8899999999999987643 5688999999999999998876543
No 204
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=74.62 E-value=5.3 Score=40.44 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.|.+++++++|++|+.... .|.+.+|+++.||++|+|+...
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 3889999999999998754 4556788889999999999864
No 205
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=74.46 E-value=12 Score=36.15 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EEeC-CCc--EEEcC-EEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-ITTE-DGS--VYHAN-YVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~~~-~G~--~~~ad-~VI~a~P~~ 108 (307)
..+...|.+.+.+ .|.+|+++++|++|..++++|. |... +|+ .+.++ .||+|+.-.
T Consensus 208 ~~~~~~L~~~~~~------~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~ 268 (557)
T PRK07843 208 QALAAGLRIGLQR------AGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGF 268 (557)
T ss_pred HHHHHHHHHHHHc------CCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCc
Confidence 3567777777765 5899999999999998766542 4332 443 36786 699977654
No 206
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=74.21 E-value=6.6 Score=36.13 Aligned_cols=40 Identities=10% Similarity=0.333 Sum_probs=33.1
Q ss_pred CCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.++++++.|++|+..... |.+.+|+++.||++|+|+...
T Consensus 72 ~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCC
Confidence 7789999999999987543 445678889999999999764
No 207
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=73.72 E-value=18 Score=31.11 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC--eE-EEEeC-----------CCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN--KV-IITTE-----------DGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~--~v-~V~~~-----------~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+|+.++.|..|..+++ ++ .|.+. +..++.++.||.|++..
T Consensus 100 ~el~~~L~~~a~e------~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 100 AEFISTLASKALQ------AGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHH------cCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 5778888887766 5899999999999998766 33 23322 12357899999998854
No 208
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.53 E-value=11 Score=36.60 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe---CCCc--EEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT---EDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VI~a~P~~~ 109 (307)
..|++.|.+.+.+ .|.+|+.+++++++..++++| .|.. .+|+ .+.|+.||+|+-...
T Consensus 136 ~~i~~~L~~~~~~------~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSG------LNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHh------CCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4678888887765 478999999999999876654 2332 2343 478999999997654
No 209
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=73.48 E-value=14 Score=34.60 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-eEEEEeCCC--cEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-KVIITTEDG--SVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v~V~~~~G--~~~~ad~VI~a~P~ 107 (307)
.+.+.+.+.+.+ . .+|+++++|.+|+.+++ ++.++..+| +++.+|.||+++..
T Consensus 211 ~~~~~~~~~l~~------~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 211 EVSKQAQKILSK------E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHHhh------c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 344455555543 3 68999999999987654 455544334 46899999998765
No 210
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=73.38 E-value=12 Score=34.13 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE---EEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI---ITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~---V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.+.+.+.+ .|.+++++..|.+|+...+... +...++..+.+|.++++++..
T Consensus 178 ~~~~~~~~~~l~~------~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 178 PEVAEELAELLEK------YGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHHHHHHH------CCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 5677788888776 4788999999999998876543 566678789999999998763
No 211
>PRK08275 putative oxidoreductase; Provisional
Probab=73.13 E-value=13 Score=35.93 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeE-EEE---eCCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKV-IIT---TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VI~a~P~~ 108 (307)
.+.+.|.+.+.+ .|.+|+.++.|++|..+ ++++ .|. ..+|+ .+.++.||+|+-..
T Consensus 138 ~i~~~L~~~~~~------~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 138 DIKKVLYRQLKR------ARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHH------CCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 577888887765 58999999999999876 4443 232 34564 47899999999764
No 212
>PRK10262 thioredoxin reductase; Provisional
Probab=73.02 E-value=13 Score=32.99 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeCC----C--cEEEcCEEEEecCh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTED----G--SVYHANYVIVTVSV 107 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~~----G--~~~~ad~VI~a~P~ 107 (307)
+.+.+.+.+.+ .|.+++++++|++|..+++++ .|.+.+ + +++.+|.||+++..
T Consensus 187 ~~~~~~~~l~~------~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 187 LIKRLMDKVEN------GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHhhccC------CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 34445555544 478999999999998765433 233322 1 36899999999865
No 213
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=73.00 E-value=5.1 Score=37.90 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=34.1
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHF 301 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~~ 301 (307)
+++..++||.+||.... +..+..|+..|+.||..|.+.|...
T Consensus 426 ~~Ts~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred ccCCCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556899999998864 3457789999999999999998753
No 214
>PRK10262 thioredoxin reductase; Provisional
Probab=72.96 E-value=15 Score=32.52 Aligned_cols=54 Identities=9% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+++.+.+.. .+.+++.+ .|++|+..++.+.++..++ .+.+|.||+|+...
T Consensus 63 ~~~~~~~~~~~~~------~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~ 116 (321)
T PRK10262 63 PLLMERMHEHATK------FETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHHHHHH------CCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCC
Confidence 3456666666543 35567665 6788888777777776544 68999999999875
No 215
>PRK07512 L-aspartate oxidase; Provisional
Probab=72.62 E-value=9.2 Score=36.64 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeC-CCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTE-DGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~-~G~--~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+. .|.+|+.+++|++|..+++++ .|... ++. .+.++.||+|+-..
T Consensus 136 ~~l~~~L~~~~~~~-----~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRAT-----PSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhC-----CCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 46888888877541 278999999999987666653 33332 232 57899999999774
No 216
>PRK12831 putative oxidoreductase; Provisional
Probab=72.53 E-value=4.9 Score=37.92 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=33.3
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||.+||-... +..+..|+..|+.||..|.+.|..
T Consensus 422 ~~Ts~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CccCCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445799999998764 457889999999999999988754
No 217
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=72.37 E-value=14 Score=35.88 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeE-EEE---eCCCc--EEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKV-IIT---TEDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VI~a~P~~~ 109 (307)
..|.+.|.+.+.+ .|.+|+.+++++++..+ +++| .|. ..+|+ .+.+++||+|+-...
T Consensus 126 ~~i~~~L~~~~~~------~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLK------NGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhc------cCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4788888888765 48999999999999875 4443 232 34665 478999999997643
No 218
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=72.36 E-value=13 Score=33.92 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=33.7
Q ss_pred CCCeeecCCeeEEEEecCC-eEEEEeCC---C--cEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKN-KVIITTED---G--SVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~-~v~V~~~~---G--~~~~ad~VI~a~P~~ 108 (307)
.|-++.|+++|+.++.+++ .+.|+..+ | +++.||.+++++.-.
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 3789999999999999987 56666543 3 358999999988653
No 219
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=71.92 E-value=8.5 Score=32.46 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
.|.++|.++-.+ .|.+|... .|.+++....-.+|.+.. +.+.+|+||+++....
T Consensus 71 ~l~d~mrkqs~r------~Gt~i~tE-tVskv~~sskpF~l~td~-~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 71 ELMDKMRKQSER------FGTEIITE-TVSKVDLSSKPFKLWTDA-RPVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHHh------hcceeeee-ehhhccccCCCeEEEecC-CceeeeeEEEecccce
Confidence 788999988765 46666554 688888887777776644 4799999999998854
No 220
>PRK08071 L-aspartate oxidase; Provisional
Probab=71.72 E-value=11 Score=35.99 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EE--eCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-IT--TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~--~~~G~--~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+. .|.+|+.+++|++|..+++++. |. ..+|+ .+.++.||+|+-..
T Consensus 130 ~~i~~~L~~~~~-------~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~ 189 (510)
T PRK08071 130 KNLLEHLLQELV-------PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGC 189 (510)
T ss_pred HHHHHHHHHHHh-------cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence 458888888775 3789999999999987666532 33 33454 57899999999663
No 221
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=71.49 E-value=4.9 Score=36.27 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCeeecCCeeEEEEecCC-eEEEEeCC---C--cEEEcCEEEEecCh
Q 021822 67 DPRLKLKKTVRKINQSKN-KVIITTED---G--SVYHANYVIVTVSV 107 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~-~v~V~~~~---G--~~~~ad~VI~a~P~ 107 (307)
..+|+.+++|++++..++ ++.+++.+ | .++.+|.||+|+..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 467899999999999884 78877764 2 35799999999864
No 222
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=71.44 E-value=14 Score=35.86 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EE---EeCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-II---TTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|++.|.+.+.+. .+.+|+.++.|++|..+++++ .| ...+|+ .+.|+.||+|+-..
T Consensus 137 ~~i~~~L~~~~~~~-----~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 137 FYIMHTLYSRALRF-----DNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 35777888776431 278999999999998766654 22 334664 47899999999775
No 223
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=71.33 E-value=15 Score=35.78 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE----EEeCCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI----ITTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~----V~~~~G~--~~~ad~VI~a~P~~ 108 (307)
.|.+.|.+.+.+. .+.+|+.++.|++|..+++++. +...+|+ .+.|+.||+|+-..
T Consensus 134 ~i~~~L~~~~~~~-----~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 195 (582)
T PRK09231 134 HMLHTLFQTSLKY-----PQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA 195 (582)
T ss_pred HHHHHHHHHhhcC-----CCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence 5777777766541 2578999999999998766542 3345664 57899999999663
No 224
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.02 E-value=5.5 Score=39.42 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=33.3
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||.+||-... +..+..|+..|+.||..|.+.|+.
T Consensus 613 ~~Ts~~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cccCCCCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 34556899999998764 456789999999999999988753
No 225
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=70.95 E-value=15 Score=35.76 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC----CeE-EEE---eCCCc--EEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK----NKV-IIT---TEDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~----~~v-~V~---~~~G~--~~~ad~VI~a~P~~~ 109 (307)
..|.+.|.+.+.+ .|.+|..++.|++|..++ +++ .|. ..+|+ .+.|+.||+|+-...
T Consensus 140 ~~i~~~L~~~~~~------~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVK------HGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHh------cCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4688888887765 589999999999998654 443 232 24564 478999999997643
No 226
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=70.87 E-value=14 Score=36.11 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-CeE-EEE---eCCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NKV-IIT---TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~V~---~~~G~--~~~ad~VI~a~P~~ 108 (307)
.|.+.|.+.+.+ .|.+|+.+++|+++..++ ++| .|. ..+|+ .+.|+.||+|+--.
T Consensus 150 ~i~~~L~~~~~~------~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 150 AILHTLYQQSLK------HNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHhh------cCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 588888888765 488999999999998765 443 233 34664 57899999999764
No 227
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=70.56 E-value=8.8 Score=35.87 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=34.1
Q ss_pred CCeeecCCeeEEEEecCCeEEEEeCC-Cc--EEEcCEEEEecChh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITTED-GS--VYHANYVIVTVSVG 108 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~~~-G~--~~~ad~VI~a~P~~ 108 (307)
|.+++++++|++|+.+++.+.+...+ ++ .+.||++|+|+...
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 77899999999999998888887643 23 36899999999764
No 228
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=70.43 E-value=6.1 Score=37.14 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=33.8
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhhhh
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKHFC 302 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~~~ 302 (307)
++..++||.+||.... +..+..|+..|+.||..|.+.|...+
T Consensus 414 ~Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 414 RTSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred ccCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445799999998754 34677899999999999999987644
No 229
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=68.92 E-value=20 Score=35.10 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeCCCcEEEcCEEEEecChh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.+.|.+.+.+. .+.+| +...|+.|..+++++ .|.+.+|..+.|+.||+|+...
T Consensus 102 y~kaL~e~L~~~-----~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 102 YRAAMREILENQ-----PNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHHHHHcC-----CCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 344555555431 25566 567799988777775 4888889889999999999864
No 230
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=68.75 E-value=17 Score=36.08 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=53.4
Q ss_pred ccccccCCccccccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEE
Q 021822 18 ISSLKNTFPRQLMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYH 97 (307)
Q Consensus 18 ~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ 97 (307)
++..++.-|+..|++---.. +++.++-+..|+-.=-+-..+ .|.+++.+.+|++|+.++. .|++..|.++.
T Consensus 31 ~iTvfg~Ep~~nY~Ri~Ls~-vl~~~~~~edi~l~~~dwy~~------~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~ 101 (793)
T COG1251 31 DITVFGEEPRPNYNRILLSS-VLAGEKTAEDISLNRNDWYEE------NGITLYTGEKVIQIDRANK--VVTTDAGRTVS 101 (793)
T ss_pred eEEEeccCCCccccceeecc-ccCCCccHHHHhccchhhHHH------cCcEEEcCCeeEEeccCcc--eEEccCCcEee
Confidence 34444444554554322222 333234566666544444444 4899999999999998764 46667898999
Q ss_pred cCEEEEecChhhh
Q 021822 98 ANYVIVTVSVGVL 110 (307)
Q Consensus 98 ad~VI~a~P~~~l 110 (307)
+|.+|+|+-...+
T Consensus 102 YDkLilATGS~pf 114 (793)
T COG1251 102 YDKLIIATGSYPF 114 (793)
T ss_pred cceeEEecCcccc
Confidence 9999999866433
No 231
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=68.65 E-value=19 Score=35.31 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EE---EeCCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-II---TTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VI~a~P~~ 108 (307)
.+.+.|.+.+.+. .+.+|+.+++|+.|..+++++ .| ...+|+ .+.++.||+|+-..
T Consensus 133 ~~~~~L~~~a~~~-----ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 133 SYKPIVAEAAKKA-----LGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHhc-----CCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 5667777666541 148999999999998766653 23 234554 57999999999764
No 232
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.23 E-value=7.1 Score=38.52 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=33.3
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||.+||-... +..+..|+..|+.||..|...|..
T Consensus 596 ~~Ts~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred cccCCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455799999998764 456788999999999999998764
No 233
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.22 E-value=13 Score=34.84 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-CeEEEEeCCC----cEEEcCEEEEecChhh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NKVIITTEDG----SVYHANYVIVTVSVGV 109 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v~V~~~~G----~~~~ad~VI~a~P~~~ 109 (307)
-..+++.|.+-...- ++-..|+++++|.+++... ++|.|.+.++ +...+|.||+|+.-..
T Consensus 89 ~~e~~~YL~~yA~~F----~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 89 HREVLEYLRDYAKHF----DLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHHHhc----ChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 345555554433220 1566899999999999988 6899988654 3568999999997763
No 234
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=68.15 E-value=6.1 Score=37.13 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=31.0
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l 298 (307)
+++..++||.+||-... +..+..|+..|+.||..|.+.|
T Consensus 411 ~~Ts~~~VfA~GD~~~g--~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILG--AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCCCC--cHHHHHHHHHHHHHHHHHHhhC
Confidence 34456799999998754 4567889999999999997653
No 235
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=68.09 E-value=20 Score=35.33 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEe-cCCeE-EE---EeCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQ-SKNKV-II---TTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~-~~~~v-~V---~~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+ .|.+|+.+++|+++.. +++++ .| ...+|+ .+.|+.||+|+-..
T Consensus 166 ~~i~~~L~~~a~~------~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLK------YDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHh------CCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 4678888887765 5899999999999887 45543 23 224664 47899999999553
No 236
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=67.99 E-value=19 Score=31.14 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=29.4
Q ss_pred CCeeecCCeeEEEEecCCeEEEEe---CCC--cEEEcCEEEEecCh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITT---EDG--SVYHANYVIVTVSV 107 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~---~~G--~~~~ad~VI~a~P~ 107 (307)
|.++++++.|++|+.++....+.+ .+| +++.+|.||++++.
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 788999999999986543223332 123 46899999999884
No 237
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=67.38 E-value=19 Score=34.80 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..+.+.|.+.+.+ .|.+++ +++|++|+..++.+.|.+.+| .+.+|.||+|+...
T Consensus 60 ~~l~~~l~~~~~~------~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 60 PELMQEMRQQAQD------FGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHH------cCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCc
Confidence 4677777776655 477774 788999998766677777666 68899999999874
No 238
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=67.26 E-value=18 Score=35.59 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhccC--CCCCCC-----CeeecCCeeEEEEecCCeE-EE---EeCCCc--EEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHN--NNKITD-----PRLKLKKTVRKINQSKNKV-II---TTEDGS--VYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~--~~~~~g-----~~i~l~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VI~a~P~ 107 (307)
..|++.|.+.+.+.. .-.+.| .+|+.+++|++|..+++++ .| ...+|+ .+.|+.||+|+-.
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 467788887775410 000014 7999999999998766654 22 224564 4799999999976
No 239
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=67.01 E-value=22 Score=34.79 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeE-EEE---eCCCc--EEEcCEEEEecChhh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKV-IIT---TEDGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VI~a~P~~~ 109 (307)
..|...|.+.+.+ .|.+|++++.|+++..+ ++++ .|. ..+|+ .+.++.||+|+-...
T Consensus 143 ~~i~~~L~~~~~~------~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLK------NHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhh------cCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 4688888887755 48899999999999875 4443 232 23564 468999999997653
No 240
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=66.74 E-value=18 Score=33.15 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCC------C--cEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTED------G--SVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~------G--~~~~ad~VI~a~P~~ 108 (307)
.+-+.|++.+.+ .|.+++.+ .|++|..+++++.|++.+ | .++.||.||.|....
T Consensus 93 ~fd~~L~~~a~~------~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~ 154 (388)
T TIGR02023 93 VFDSYLRERAQK------AGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGAN 154 (388)
T ss_pred HHHHHHHHHHHh------CCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCC
Confidence 455567766655 48899765 699998888887776543 2 368999999998764
No 241
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=66.33 E-value=25 Score=33.15 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-E-EEEeCCCcEEEcCEEEEecChhh
Q 021822 42 DPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-V-IITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 42 ~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
++.-+.++....+.. .|.+++.++ |+.|..++++ + .|.+.+|+++.||.||=|+....
T Consensus 152 DR~~fd~~L~~~A~~---------~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEE---------RGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp EHHHHHHHHHHHHHH---------TT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred eHHHHHHHHHHHHhc---------CCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 344455555554444 489998875 8888877655 3 68888998999999999998743
No 242
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=66.23 E-value=11 Score=38.67 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.|.+++++++|++|+.+.. .|.+.+|+.+.||++|+|+...
T Consensus 72 ~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 72 HGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 3789999999999988653 4556788889999999999864
No 243
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=65.54 E-value=29 Score=33.26 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe-CCCc--EEEcC-EEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT-EDGS--VYHAN-YVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~-~~G~--~~~ad-~VI~a~P~~ 108 (307)
.++..|.+.+.+. .|.+|+++++|++|..++++| .|.. .+|+ .+.++ .||+|+--.
T Consensus 174 ~l~~~l~~~~~~~-----~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 174 ALIGRFLAALARF-----PNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHHhC-----CCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 4667766665431 378999999999998776654 2322 3443 46786 799998664
No 244
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=65.15 E-value=25 Score=34.33 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE----EEeCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI----ITTEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~----V~~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+. .+.++..++.|++|..+++++. +...+|+ .+.++.||+|+-..
T Consensus 132 ~~i~~~L~~~~~~~-----~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 132 FHMLHTLFQTSLTY-----PQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 45888888776541 2578999999999988766542 2334664 57899999999664
No 245
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=64.93 E-value=9.4 Score=36.06 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=31.8
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
+++..++||.+||.... +..+..|+..|+.||..|.+.|+
T Consensus 427 ~~T~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccCCCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 34445799999998764 34567899999999999988764
No 246
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.44 E-value=13 Score=34.25 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHhhhccC-CCCCCCCeeecCCeeEEEEecCCe-EEEEeCC---C--cEEEcCEEEEecChh
Q 021822 43 PRGFETVVHYIANQFLSHN-NNKITDPRLKLKKTVRKINQSKNK-VIITTED---G--SVYHANYVIVTVSVG 108 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~-~~~~~g~~i~l~~~V~~I~~~~~~-v~V~~~~---G--~~~~ad~VI~a~P~~ 108 (307)
+|=...++++|-+.+-+.. .|.+....++.++.|++++..+++ +.+++.. | +++..|.||+|+.-.
T Consensus 267 kgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 267 KGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 3434455555554443321 233456789999999999999876 6665532 3 468999999999886
No 247
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=63.88 E-value=10 Score=34.98 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
|.-+..+..|.+|+..++.| .+.||.++.||.+++|+...
T Consensus 271 GvAvl~G~kvvkid~~d~~V--~LnDG~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 271 GVAVLRGRKVVKIDEEDKKV--ILNDGTTIGYDKCLIATGVR 310 (659)
T ss_pred ceEEEeccceEEeecccCeE--EecCCcEeehhheeeecCcC
Confidence 77899999999999887655 45799999999999998663
No 248
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=63.45 E-value=11 Score=33.91 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 260 QPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
+..++||.+||-... +..+..|+..|+.||..|.+.|.
T Consensus 313 t~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 313 TSREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred cCCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHHh
Confidence 344799999998763 46788999999999999988774
No 249
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=63.19 E-value=12 Score=30.22 Aligned_cols=42 Identities=21% Similarity=0.416 Sum_probs=32.0
Q ss_pred CCeeecCCeeEEEEecCCe-----EEE---EeCCCcEEEcCEEEEecChh
Q 021822 67 DPRLKLKKTVRKINQSKNK-----VII---TTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~-----v~V---~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.+++++++|.+|+..... +.+ ...++..+.||+||+|+...
T Consensus 72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 6789999999999988773 233 23345679999999999853
No 250
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=62.99 E-value=30 Score=33.90 Aligned_cols=59 Identities=10% Similarity=-0.048 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-eE-EEEe---CCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-KV-IITT---EDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v-~V~~---~~G~--~~~ad~VI~a~P~~ 108 (307)
.|...|.+.+.+..+ ..+.+|+++++|++|..+++ +| .|.. .+|+ .+.|+.||+|+--.
T Consensus 130 ~i~~~L~~~~~~~~~--~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 130 QLLLALDSALRRQIA--AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred HHHHHHHHHHHhhhc--cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 455555554432100 02689999999999987543 43 3332 2454 47899999999663
No 251
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=62.34 E-value=31 Score=33.30 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhcc-CCCCCCCCeeecCCeeEEEEecCCeE-EEEe---CC--------------C-cEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSH-NNNKITDPRLKLKKTVRKINQSKNKV-IITT---ED--------------G-SVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~-~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~---~~--------------G-~~~~ad~VI~a~P~ 107 (307)
.+++.|.+.+.+. .. .+.+|+++++++++..++++| .|.. .+ + ..+.++.||+|+--
T Consensus 149 ~~~~~l~~~~~~~~~~---~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 149 GVVEPFERRVREAAAR---GLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHHHHHHHHHHHHh---CCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 4677776655310 00 258999999999998766654 3432 11 2 25789999999965
Q ss_pred h
Q 021822 108 G 108 (307)
Q Consensus 108 ~ 108 (307)
.
T Consensus 226 f 226 (549)
T PRK12834 226 I 226 (549)
T ss_pred c
Confidence 4
No 252
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=62.25 E-value=10 Score=36.10 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=33.1
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||.+||-... +..+..|+..|+.||..|.+.|..
T Consensus 440 ~~Ts~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred ceECCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455899999998654 346778999999999999998865
No 253
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=61.80 E-value=10 Score=36.72 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=33.2
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
.+..++||.+||.... +..+..|+..|++||..|.+.|.+
T Consensus 406 ~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 406 MTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred cCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445799999998764 467889999999999999998875
No 254
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=61.28 E-value=28 Score=30.29 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCeeecCCeeEEEEec--CCe---EEEEeCCCc----EEEcCEEEEecChhh
Q 021822 67 DPRLKLKKTVRKINQS--KNK---VIITTEDGS----VYHANYVIVTVSVGV 109 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~--~~~---v~V~~~~G~----~~~ad~VI~a~P~~~ 109 (307)
+.+|++++.|++|..+ +++ |.+...++. .+.++.||++.-.-.
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 7899999999999654 443 444455554 357899999987643
No 255
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=61.05 E-value=31 Score=33.76 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-CeE-EEE---eCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NKV-IIT---TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~V~---~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+ .|.+|+.+++|+++..++ +++ .|. ..+|+ .+.++.||+|+-..
T Consensus 148 ~~l~~~L~~~~~~------~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 148 HALLHTLYQQNVA------AKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHHh------cCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 3588888877665 588999999999998753 443 333 23564 47899999998764
No 256
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=60.74 E-value=25 Score=32.72 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCCcEEEecccccCC---CCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 261 PFGRIYFAGEHTNST---YLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 261 p~~~l~~aGd~~~~~---~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
..++||.+||-.... .+.....|+..|..+|..|...+..
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 458999999987632 2345677999999999999998754
No 257
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=60.65 E-value=31 Score=34.12 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeE-EEEe---CCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKV-IITT---EDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v-~V~~---~~G~--~~~ad~VI~a~P~~ 108 (307)
..|++.|.+.+.+ .|.+|+.++.++++..+ ++++ .|.. .+|+ .+.++.||+|+--.
T Consensus 187 ~~i~~~L~~~a~~------~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 187 HAMLHTLYGQAMK------HNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHHh------CCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 3678888887765 48899999999998765 4443 2322 3564 47899999999764
No 258
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=60.04 E-value=13 Score=38.90 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=34.0
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||.+||.... +..+..|+..|++||..|.+.|..
T Consensus 716 ~~Ts~pgVFAaGDv~~G--~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTG--GATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCCC--ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556899999998754 457889999999999999999875
No 259
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=59.97 E-value=12 Score=37.01 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=33.6
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+.+..++||.+||-... +..+..|+..|+.||..|.+.|..
T Consensus 462 ~~Ts~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CcCCCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455899999998764 456788999999999999999875
No 260
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=59.89 E-value=17 Score=32.47 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCeeecCCeeEEEEecCCeE-EEEe--CCCc--EEEcCEEEEecChhhh
Q 021822 67 DPRLKLKKTVRKINQSKNKV-IITT--EDGS--VYHANYVIVTVSVGVL 110 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v-~V~~--~~G~--~~~ad~VI~a~P~~~l 110 (307)
-.+|.+|++|+.|..++++| .|.+ .+|+ .+.++.||+|+.....
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 36799999999999887775 3444 3454 3689999999876543
No 261
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=59.46 E-value=9.6 Score=37.69 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=36.2
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.|-++++++.++.|...+.-..|.+.||..+.||-||.++-.
T Consensus 200 ~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 200 LGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred hcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence 589999999999998854446799999999999999999865
No 262
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=59.26 E-value=40 Score=33.46 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCeeecCCeeEEEEecCCe--EEEEeCC-------C--------cEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNK--VIITTED-------G--------SVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~--v~V~~~~-------G--------~~~~ad~VI~a~P~~ 108 (307)
.|.+|++++.|++|+..++. +.|.+.+ + +++.+|.||+++...
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 48899999999999876543 5554421 1 268999999998653
No 263
>PRK13984 putative oxidoreductase; Provisional
Probab=58.97 E-value=12 Score=36.61 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=31.8
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||.+||-... +. +-.|+..|+.||..|.+.|.+
T Consensus 564 ~~Ts~~gVfAaGD~~~~--~~-~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHG--PD-IIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CccCCCCEEEecCcCCc--hH-HHHHHHHHHHHHHHHHHHhcc
Confidence 34556799999998765 33 457999999999999988754
No 264
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=58.89 E-value=34 Score=33.83 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhccCCCCCCCC--eeecCCeeEEEEecC---CeEEEEeC------CC--cEEEcCEEEEecChhh
Q 021822 48 TVVHYIANQFLSHNNNKITDP--RLKLKKTVRKINQSK---NKVIITTE------DG--SVYHANYVIVTVSVGV 109 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~--~i~l~~~V~~I~~~~---~~v~V~~~------~G--~~~~ad~VI~a~P~~~ 109 (307)
.+-+.|.+.+.+ .|. +++.+++|++++.++ .+|+|++. +| ++++||.||-|=....
T Consensus 142 ~le~~L~~~l~~------~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 142 RVHDYFLDVMRN------SPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred HHHHHHHHHHHh------cCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch
Confidence 455556666543 343 678999999998764 24777664 35 4789999998877653
No 265
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=58.19 E-value=31 Score=33.03 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCeeecCCeeEEEEecCCeEE-EEeCC---C--cEEEcCEEEEecCh
Q 021822 67 DPRLKLKKTVRKINQSKNKVI-ITTED---G--SVYHANYVIVTVSV 107 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~-V~~~~---G--~~~~ad~VI~a~P~ 107 (307)
|.+|++++.|++|..+++++. |.+.+ | +++.+|.||+++..
T Consensus 402 gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 402 NVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred CCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 789999999999987655543 54432 3 36899999999865
No 266
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=58.01 E-value=27 Score=28.93 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=49.6
Q ss_pred ceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCccc
Q 021822 37 SYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIG 116 (307)
Q Consensus 37 ~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~ 116 (307)
+... ++|+.++.++|.+. .+.+|+||+....+.. .+....++.||.|.|++.+-.
T Consensus 42 QgiP--~~GYT~~fe~mL~h---------~~I~v~l~td~~~~~~----------~~~~~~~~~viyTG~iDe~F~---- 96 (204)
T PF03275_consen 42 QGIP--KDGYTKMFENMLDH---------PNIEVRLNTDFFDIIE----------FGGEPYADKVIYTGPIDEYFD---- 96 (204)
T ss_dssp EEEE--TTHHHHHHHHHC-S---------TTEEEECS--GGGCHH----------HHCCCTEEEEEE-S-HHHHTT----
T ss_pred hhCc--hhCHHHHHHHHhCC---------CceEEEcCCCHHHhhc----------ccccccCCeEEEeCCHHHHhC----
Confidence 4444 79999999999865 2567999976555443 111235789999999998853
Q ss_pred ccCCCCHHHHHHHhhcCCCcceEEEEEcCCCCcCCCCCcceEEeecCC
Q 021822 117 FVPRLPLWKKLAINNFDMAIYTKIFMKFPYKFWPTGPGTEFLLYAHET 164 (307)
Q Consensus 117 ~~p~l~~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~ 164 (307)
-.+ -.+.|.+.--....++....+. ...+.+....
T Consensus 97 --y~~--------G~L~YRsL~F~~~~l~~~~~Q~---~avvnY~~~~ 131 (204)
T PF03275_consen 97 --YCF--------GELPYRSLRFEFETLDQENFQG---NAVVNYPDDD 131 (204)
T ss_dssp --TTT--------S---EEEEEEEEEEESSS-SSS---SSEEEESSTT
T ss_pred --cCC--------CCCceeEEEEEEEEcCCCCCCC---CeEEECCCCC
Confidence 111 2345555544455555555543 3445565433
No 267
>PRK07395 L-aspartate oxidase; Provisional
Probab=57.43 E-value=25 Score=34.08 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC--CeE-EEE-eCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK--NKV-IIT-TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v-~V~-~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|++.|.+.+.+. .|.+|+++++|+++..++ +++ .|. ..+|+ .+.++.||+|+--.
T Consensus 134 ~~i~~~L~~~~~~~-----~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQR-----PNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhc-----CCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 56888888877531 378999999999998763 433 232 23554 37899999999774
No 268
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=56.83 E-value=14 Score=37.27 Aligned_cols=39 Identities=26% Similarity=0.174 Sum_probs=32.1
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
++..++||.+||-... +..+..|+..|+.||..|.+.|.
T Consensus 712 ~Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 712 QSSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445799999998764 45688999999999999998875
No 269
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=56.57 E-value=22 Score=33.36 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=33.7
Q ss_pred CCeeecCCeeEEEEecC--CeEEEEeCCCcE--EEcCEEEEecChh
Q 021822 67 DPRLKLKKTVRKINQSK--NKVIITTEDGSV--YHANYVIVTVSVG 108 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~--~~v~V~~~~G~~--~~ad~VI~a~P~~ 108 (307)
.-+|+++++|+.+..+. +.|+|++.+|.. +.||.||+|+...
T Consensus 98 ~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 98 RFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred eeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 45789999999988765 469999988755 4599999999873
No 270
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=56.08 E-value=15 Score=33.73 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=30.7
Q ss_pred hhCCCCcEEEecccccCCC-Cc--chhHHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTY-LG--YVDGAYFSGINTANALIKC 297 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~-~g--~~egAv~SG~~aA~~il~~ 297 (307)
+.+-.++|||||+-+.... .| .+.-|+.||..|+..+..-
T Consensus 332 ~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~ 374 (376)
T TIGR03862 332 MLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSW 374 (376)
T ss_pred hcccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3445689999999887532 33 7889999999999887653
No 271
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=55.65 E-value=26 Score=31.25 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe-----EEEEeCCCcEEEcCEEEEecChh
Q 021822 46 FETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK-----VIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 46 ~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-----v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
++.+..++.+.+.. .|++|.+|-+|++|+.+.+. ++|....|+++++..||.++-+.
T Consensus 195 ~~~v~ls~~edF~~------~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDF------MGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQ 256 (453)
T ss_pred hHHHHHHHHHHHHH------hcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEecccc
Confidence 67888899998887 49999999999999987653 56665557789999999888765
No 272
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=54.67 E-value=50 Score=32.41 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCe-EEEEeCCCcEEEcCEEEEecChhh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNK-VIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~-v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
+.+.|.+.+.+. .+..++ ...|+.+... +++ +.|.+.+|..+.||.||+|+....
T Consensus 98 y~~~L~e~Le~~-----pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQ-----PNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcC-----CCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 445666666542 245665 4567777654 444 468888888899999999998864
No 273
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=54.51 E-value=39 Score=31.89 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=29.4
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +.....|...|..||..++.
T Consensus 300 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCTGV--LPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeeccCC--ccchhHHHHHHHHHHHHHcC
Confidence 44556899999998765 34578899999999998874
No 274
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=54.40 E-value=15 Score=38.15 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=32.5
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
.+..++||.+||...+ +..+--|+..|+.||..|.+.|.-
T Consensus 589 ~Ts~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 589 RTSIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred ccCCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455799999998764 357888999999999999987653
No 275
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=52.67 E-value=4.6 Score=37.67 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEeC--CC-cEEEcCEEEEecChhhhcc
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITTE--DG-SVYHANYVIVTVSVGVLQS 112 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~~--~G-~~~~ad~VI~a~P~~~l~~ 112 (307)
+..+..+.+.|+.+ .|.+|++++.|..+..+++++ .|.+. +| .++.||.||=|+.-..|..
T Consensus 89 ~~~~~~~l~~~l~e---------~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 89 PEVFKAVLDEMLAE---------AGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAA 153 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55666777777744 389999999999999988664 34443 34 4689999999998655543
No 276
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=52.54 E-value=22 Score=32.71 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=30.4
Q ss_pred CcEEEecccccCCC---CcchhHHHHHHHHHHHHHHHHHh
Q 021822 263 GRIYFAGEHTNSTY---LGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 263 ~~l~~aGd~~~~~~---~g~~egAv~SG~~aA~~il~~l~ 299 (307)
+++.++||+-..-. .+.+.-|+.||..||+.+.+.+.
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 68999999866433 25799999999999999987764
No 277
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=52.51 E-value=42 Score=32.43 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCeeecCCeeEEEEecCC---eE---EEEeC-CCc--EEEcCEEEEecChhh
Q 021822 67 DPRLKLKKTVRKINQSKN---KV---IITTE-DGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~---~v---~V~~~-~G~--~~~ad~VI~a~P~~~ 109 (307)
+.+|++++.|++|+.+++ ++ .+... +|+ ++.|+.||+|.-.=.
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIe 279 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVH 279 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchh
Confidence 479999999999998642 33 33333 454 479999999986543
No 278
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.35 E-value=20 Score=35.15 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHHh
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l~ 299 (307)
+++++||-||+..+.+.+| .+-.|+.+|++|++.+.+.++
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 4789999999986533334 577899999999998876543
No 279
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=51.14 E-value=26 Score=32.85 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.|-++++++.|++++.... +|.+.+|+++.++..|+|+...
T Consensus 140 ~gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred cCceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecCc
Confidence 3788999999999998875 4556789999999999999873
No 280
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=50.92 E-value=56 Score=34.93 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCCCcEEEecccccCC----CC-c-chhHHHHHHHHHHHHHHHHHhhhh
Q 021822 260 QPFGRIYFAGEHTNST----YL-G-YVDGAYFSGINTANALIKCLKHFC 302 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~----~~-g-~~egAv~SG~~aA~~il~~l~~~~ 302 (307)
+|+++||-||+....- |. | .+-.|+.+|+.|++.+.+.+++.+
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 5889999999974321 11 1 355589999999999999888744
No 281
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=50.87 E-value=19 Score=31.03 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=29.3
Q ss_pred CcEEEecccccCCC----Cc-chhHHHHHHHHHHHHHHHHHhh
Q 021822 263 GRIYFAGEHTNSTY----LG-YVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 263 ~~l~~aGd~~~~~~----~g-~~egAv~SG~~aA~~il~~l~~ 300 (307)
++||.+|.+....+ .| ..-|=+.||++||+.|+++|+.
T Consensus 214 ~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 214 PGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred CCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 79999999866321 23 4556678999999999999874
No 282
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=50.58 E-value=21 Score=34.73 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.0
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+....+.+| .+-.|+.+|++|++.+.+..
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999986532334 56788999999999887654
No 283
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.52 E-value=45 Score=31.54 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=30.1
Q ss_pred CCCeeecCCeeEEEEecCCeEE-EE-----eCC-------C--cEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVI-IT-----TED-------G--SVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~-V~-----~~~-------G--~~~~ad~VI~a~P~ 107 (307)
.|.++++++.+++|...++++. |. ..+ | +++.+|.||+++..
T Consensus 342 ~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 342 EGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred cCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 3789999999999976555542 32 222 2 36899999999874
No 284
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=50.35 E-value=32 Score=30.95 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEE-EEeCCCcE--EEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVI-ITTEDGSV--YHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-V~~~~G~~--~~ad~VI~a~P~ 107 (307)
++-++|...+.+ +|+.+..+-+|.+.+..+++|+ |-+.++.. +++|.+|+|+..
T Consensus 259 Rl~~~L~~~f~~------~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGs 315 (421)
T COG3075 259 RLHNQLQRQFEQ------LGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGS 315 (421)
T ss_pred hHHHHHHHHHHH------cCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccc
Confidence 567788888877 6999999999999999998874 66666643 578888887755
No 285
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=49.74 E-value=45 Score=31.32 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=30.1
Q ss_pred CCCeeecCCeeEEEEecCCe---EEEEe-----------------CCCcEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSKNK---VIITT-----------------EDGSVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~---v~V~~-----------------~~G~~~~ad~VI~a~P~ 107 (307)
.|.+|++++.|.+|..++++ +.+.. .+++++.+|.||+++..
T Consensus 324 ~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 324 EGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred CCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 48899999999999866543 44321 12246899999999865
No 286
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=49.39 E-value=53 Score=30.72 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=29.9
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +...+.|+..|+.||+.|+.
T Consensus 289 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 45556899999998764 45678899999999998874
No 287
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=49.28 E-value=23 Score=34.95 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=30.3
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+..+.+.+| .+-.|+.+|++|++.+.+.+
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 4789999999986533344 57789999999999887654
No 288
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=49.21 E-value=18 Score=37.61 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=30.8
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l 298 (307)
.+..++||.+||-... ++.+..|+..|+.||..|+...
T Consensus 802 ~Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 802 ETNITNVFVIGDANRG--PATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred ccCCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhccc
Confidence 3345799999998654 5678899999999999998653
No 289
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=48.72 E-value=20 Score=37.34 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=32.0
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
++..++||.+||.... ++.+..|+..|+.||..|+..+.
T Consensus 804 qTs~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 804 ETSLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ccCCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhcC
Confidence 4445799999998654 56788999999999999998665
No 290
>PLN02815 L-aspartate oxidase
Probab=47.64 E-value=45 Score=32.67 Aligned_cols=57 Identities=5% Similarity=0.031 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-Ce---E-EEE---eCCCc--EEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-NK---V-IIT---TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~---v-~V~---~~~G~--~~~ad~VI~a~P~~ 108 (307)
..|.+.|.+.+.+. .+.+|+.+++++++..++ ++ | .|. ..+|+ .+.++.||+|+--.
T Consensus 155 ~~i~~~L~~~~~~~-----~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 155 REIERALLEAVKND-----PNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 45888888877542 378999999999998753 31 2 333 23564 46899999999754
No 291
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.91 E-value=29 Score=33.74 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=30.9
Q ss_pred CC-CCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHHh
Q 021822 260 QP-FGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 260 ~p-~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l~ 299 (307)
++ +++||-||+....+.+| .+-.|+.+|++|++.+.+.++
T Consensus 357 t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 357 NPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred cCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 55 89999999986533344 677899999999999876653
No 292
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=46.85 E-value=60 Score=30.59 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=27.9
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALI 295 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il 295 (307)
+++..++||.+||-... +.....|...|+.||+.|+
T Consensus 306 l~ts~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 306 CQTKERHIYAIGDVIGE--PQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred cccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHc
Confidence 34445799999998753 3457789999999999875
No 293
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=46.84 E-value=31 Score=33.14 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=30.7
Q ss_pred CCeeecCCeeEEEEecCCeE-EEEeCC-Cc---EEEcCEEEEecCh
Q 021822 67 DPRLKLKKTVRKINQSKNKV-IITTED-GS---VYHANYVIVTVSV 107 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v-~V~~~~-G~---~~~ad~VI~a~P~ 107 (307)
+.+|+.+++|++|..+++++ .|.+.+ |. .+.++.||++.-.
T Consensus 208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 68999999999999876653 355433 22 2579999999876
No 294
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=46.71 E-value=51 Score=34.51 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=30.7
Q ss_pred CCCeeecCCeeEEEEecCC--eEEEEe--CCCcEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSKN--KVIITT--EDGSVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~--~v~V~~--~~G~~~~ad~VI~a~P~ 107 (307)
.|.+|++++.|++|..++. ++.+.. .+++++.||.|++++..
T Consensus 364 ~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 364 LGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred cCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 4789999999999986543 244442 24457899999999765
No 295
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=46.09 E-value=24 Score=30.40 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=28.3
Q ss_pred CcEEEecccccCCC----Cc-chhHHHHHHHHHHHHHHHHHh
Q 021822 263 GRIYFAGEHTNSTY----LG-YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 263 ~~l~~aGd~~~~~~----~g-~~egAv~SG~~aA~~il~~l~ 299 (307)
++||.+|.+...-+ .| ..-|=+.||++||+.|+++|+
T Consensus 213 ~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 213 PNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred CCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 89999999876321 23 455667899999999999874
No 296
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=44.57 E-value=35 Score=31.21 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=30.1
Q ss_pred CcEEEecccccCCCC---cchhHHHHHHHHHHHHHHHHHh
Q 021822 263 GRIYFAGEHTNSTYL---GYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 263 ~~l~~aGd~~~~~~~---g~~egAv~SG~~aA~~il~~l~ 299 (307)
+++.++||+-+.-.+ +.+.-|+.||..||+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 679999998665322 4699999999999999988765
No 297
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=44.57 E-value=14 Score=32.88 Aligned_cols=61 Identities=16% Similarity=0.347 Sum_probs=43.8
Q ss_pred ceeeeCCCCHHHHHH---HHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 37 SYFVADPRGFETVVH---YIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 37 ~~~~~~~gG~~~l~~---~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
.|-+. -||+.+|-. .+++.|++ |.. .+..+|.+++.+.+. |.+.+|+++.+|+.|+|+...
T Consensus 81 gfTLv-GgGl~~l~~srr~~a~liP~-------~a~-wi~ekv~~f~P~~N~--v~t~gg~eIsYdylviA~Giq 144 (446)
T KOG3851|consen 81 GFTLV-GGGLKSLDSSRRKQASLIPK-------GAT-WIKEKVKEFNPDKNT--VVTRGGEEISYDYLVIAMGIQ 144 (446)
T ss_pred ceEEe-ccchhhhhhccCcccccccC-------CcH-HHHHHHHhcCCCcCe--EEccCCcEEeeeeEeeeeece
Confidence 44444 588888765 57777764 333 334888888877764 455688899999999999875
No 298
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.50 E-value=32 Score=33.52 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=29.7
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+-...+.+| .+-.|+.+|++|++.+.+..
T Consensus 373 t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 373 TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 4679999999986533334 56779999999998887654
No 299
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=44.10 E-value=36 Score=31.25 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=30.5
Q ss_pred CcEEEecccccCC---CCcchhHHHHHHHHHHHHHHHHHh
Q 021822 263 GRIYFAGEHTNST---YLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 263 ~~l~~aGd~~~~~---~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
+++.++||+.... ..+.+..|+.||..||+.|.+.+.
T Consensus 269 ~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~ 308 (396)
T COG0644 269 DGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALE 308 (396)
T ss_pred CCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 5899999997632 235799999999999999999764
No 300
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=43.58 E-value=23 Score=29.94 Aligned_cols=38 Identities=29% Similarity=0.479 Sum_probs=29.4
Q ss_pred CcEEEecccccCCC----Cc-chhHHHHHHHHHHHHHHHHHhh
Q 021822 263 GRIYFAGEHTNSTY----LG-YVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 263 ~~l~~aGd~~~~~~----~g-~~egAv~SG~~aA~~il~~l~~ 300 (307)
++||.||...+--+ .| ..-|=+.||+.||+.|+++|+.
T Consensus 219 pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 219 PGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred CCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 79999999876311 23 4556789999999999999864
No 301
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=43.50 E-value=29 Score=34.17 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+..+.+.+| .+-.|+.+|++|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 4689999999986532233 57778999999999887654
No 302
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=42.96 E-value=31 Score=33.43 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=31.3
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
++..++||.+||-.... ...+..|+..|+.||..|.+.+..
T Consensus 270 ~Ts~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred ccCCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHHHHHh
Confidence 34457999999976432 234678999999999999887765
No 303
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=42.65 E-value=73 Score=28.66 Aligned_cols=42 Identities=12% Similarity=-0.015 Sum_probs=28.1
Q ss_pred CCCeeecCCeeEEEEecCCeEEEEe--------------------CCCcEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVIITT--------------------EDGSVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~V~~--------------------~~G~~~~ad~VI~a~P~ 107 (307)
.|.+|++++.|.+|+.++....|.+ .+++.+.+|.||+++..
T Consensus 223 ~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 223 RGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred cCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 3788999999999875532112321 12346899999998866
No 304
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.36 E-value=34 Score=33.35 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=29.0
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+|+++||-||+....+.+| .+-.|+.+|++|++.+.+.+
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999986532222 46678999999999887654
No 305
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.78 E-value=40 Score=32.99 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=29.2
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+....+.+| .+-.|+.+|++|++.+.+.+
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999976532233 34678999999999887654
No 306
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=40.55 E-value=29 Score=31.85 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=29.9
Q ss_pred CCCCcEEEecccccCC-CC-c-chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNST-YL-G-YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~-~~-g-~~egAv~SG~~aA~~il~~l 298 (307)
+..++|||||+-+... |- | .+.-|+.||..|++.+.+.+
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 4458999999987753 22 3 67889999999999887643
No 307
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=40.43 E-value=31 Score=31.93 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCcCCCCCCCCChhhhhHhh----CCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 240 KGSYSNWPNGYTLHSYHDLQ----QPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 240 ~g~y~~~~~g~~~~~~~~~~----~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
.|+|...+|..+.++...+. -|.++|+|+||+..++ .|.+-.-..+..-|..++.
T Consensus 56 ~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn--~Wq~lpa~eAM~~A~~li~ 114 (426)
T PRK15458 56 FGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPN--RWQNLPAAQAMANADDLIK 114 (426)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCc--cccCCCHHHHHHHHHHHHH
Confidence 38898888887766554443 2445899999999984 2333333444444444444
No 308
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=40.27 E-value=32 Score=31.76 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=33.3
Q ss_pred CCcCCCCCCCCChhhhhHhhC----CCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 240 KGSYSNWPNGYTLHSYHDLQQ----PFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 240 ~g~y~~~~~g~~~~~~~~~~~----p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
.|+|..++|..+.++...+.. |.++|+|+||+..++ .|.+-.-..+..-|..++.
T Consensus 53 ~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn--~Wq~~pa~eAM~~A~~li~ 111 (421)
T PRK15052 53 FGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPN--CWQQEPADAAMEKSVELVK 111 (421)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHH
Confidence 388988888877665544432 435899999999984 2333333344444444333
No 309
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=39.98 E-value=43 Score=31.06 Aligned_cols=44 Identities=25% Similarity=0.170 Sum_probs=35.3
Q ss_pred HhhCCC-CcEEEecccccCCC----CcchhHHHHHHHHHHHHHHHHHhh
Q 021822 257 DLQQPF-GRIYFAGEHTNSTY----LGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 257 ~~~~p~-~~l~~aGd~~~~~~----~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
.++.|. ++||.+||-....+ +++.+.|.+.|.-+|+.|.+.+..
T Consensus 285 ~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 285 TLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 344443 78999999865543 689999999999999999998775
No 310
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=39.86 E-value=32 Score=32.25 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=29.6
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +...+-|+..|+.+|+.|+.
T Consensus 291 ~~T~~p~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGK--VELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCC--cccHHHHHHHHHHHHHHHhc
Confidence 44455799999998754 45788999999999999873
No 311
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=39.56 E-value=29 Score=32.20 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=25.8
Q ss_pred Hhh-CCCCcEEEecccccCCC-C-c-chhHHHHHHHHHHH
Q 021822 257 DLQ-QPFGRIYFAGEHTNSTY-L-G-YVDGAYFSGINTAN 292 (307)
Q Consensus 257 ~~~-~p~~~l~~aGd~~~~~~-~-g-~~egAv~SG~~aA~ 292 (307)
.|. +..++|||||+-+.... . | .+.-|+.||..|++
T Consensus 369 TmeSk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 369 TMESKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp T-BBSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 453 34589999999987532 2 3 68999999999985
No 312
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.21 E-value=45 Score=32.46 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=29.0
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+..+.+.+| .+-.|+.+|++|++.+.+.+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4689999999976532233 35778999999999887654
No 313
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=39.06 E-value=34 Score=32.92 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=27.0
Q ss_pred CeeEEEEecCC-e-EEEEeCCCcEEEcCEEEEecChhh
Q 021822 74 KTVRKINQSKN-K-VIITTEDGSVYHANYVIVTVSVGV 109 (307)
Q Consensus 74 ~~V~~I~~~~~-~-v~V~~~~G~~~~ad~VI~a~P~~~ 109 (307)
..|+.|...++ + +.|.+.+|..+.|++||+|+.-..
T Consensus 121 ~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 121 GEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred hhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 44555555444 3 568899999999999999997753
No 314
>PRK06116 glutathione reductase; Validated
Probab=38.70 E-value=34 Score=32.00 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=29.3
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +.....|+..|+.||+.|+.
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 34455899999997653 35678999999999999864
No 315
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=38.65 E-value=45 Score=31.40 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=29.8
Q ss_pred CcEEEecccccCCC---CcchhHHHHHHHHHHHHHHHHHh
Q 021822 263 GRIYFAGEHTNSTY---LGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 263 ~~l~~aGd~~~~~~---~g~~egAv~SG~~aA~~il~~l~ 299 (307)
+++.++||+...-. .+.+.-|+.||..||+.|.+.+.
T Consensus 309 ~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 309 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 68999999866422 24799999999999999987764
No 316
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=38.64 E-value=43 Score=32.67 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=29.9
Q ss_pred hCCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHHh
Q 021822 259 QQPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l~ 299 (307)
++++++||-||+....+.+| .+-.|+.+|++|++.+.+.++
T Consensus 368 ~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 368 ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 36789999999975422122 466788999999998876653
No 317
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=38.14 E-value=46 Score=32.27 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=30.2
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHHh
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l~ 299 (307)
+++++||-||+....+.+| .+-.|+.+|++|++.+.+.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999976532222 467789999999999876643
No 318
>PRK14727 putative mercuric reductase; Provisional
Probab=38.00 E-value=31 Score=32.67 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=30.0
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||-+||-... +..++-|+..|+.||..|+.
T Consensus 309 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 309 METSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred eecCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 45556899999998754 46788899999999999864
No 319
>PRK09077 L-aspartate oxidase; Provisional
Probab=37.84 E-value=1.1e+02 Score=29.54 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC------CeE-EEEe---CCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK------NKV-IITT---EDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~------~~v-~V~~---~~G~--~~~ad~VI~a~P~~ 108 (307)
.|.+.|.+.+.+. .+.+|..+++|+.+..++ +++ .|.. .+|+ .+.++.||+|+-..
T Consensus 139 ~i~~~L~~~~~~~-----~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 139 AVQTTLVERARNH-----PNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHhC-----CCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 5677777766542 268999999999987643 443 2332 3454 47899999999664
No 320
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=37.82 E-value=62 Score=25.75 Aligned_cols=80 Identities=10% Similarity=0.159 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCCCCeeec--CCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChhhhccCcccccCC
Q 021822 43 PRGFETVVHYIANQFLSHNNNKITDPRLKL--KKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVGVLQSDLIGFVPR 120 (307)
Q Consensus 43 ~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l--~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~~~i~~~p~ 120 (307)
.|-++.|++.++..+.+ .|.++.+ -+.|..+. --.+|+||+..|..... +.+.
T Consensus 11 ~GqT~kIA~~iA~~L~e------~g~qvdi~dl~~~~~~~--------------l~~ydavVIgAsI~~~h-----~~~~ 65 (175)
T COG4635 11 DGQTRKIAEYIASHLRE------SGIQVDIQDLHAVEEPA--------------LEDYDAVVIGASIRYGH-----FHEA 65 (175)
T ss_pred CCcHHHHHHHHHHHhhh------cCCeeeeeehhhhhccC--------------hhhCceEEEecchhhhh-----hHHH
Confidence 57799999999999975 2433321 11111111 12689999999998764 4444
Q ss_pred CCHHHHHHHhhcCC--CcceEEEEEcCCC
Q 021822 121 LPLWKKLAINNFDM--AIYTKIFMKFPYK 147 (307)
Q Consensus 121 l~~~~~~~i~~~~~--~~~~kv~l~~~~~ 147 (307)
+...+.+....+.- ...+.|.+.+++.
T Consensus 66 ~~~Fv~k~~e~L~~kP~A~f~vnl~a~k~ 94 (175)
T COG4635 66 VQSFVKKHAEALSTKPSAFFSVNLTARKE 94 (175)
T ss_pred HHHHHHHHHHHHhcCCceEEEeehhhccc
Confidence 44333333344433 3355566666543
No 321
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=37.49 E-value=52 Score=32.01 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=30.8
Q ss_pred hCCCCcEEEecccccCC----CC--c-chhHHHHHHHHHHHHHHHHHhh
Q 021822 259 QQPFGRIYFAGEHTNST----YL--G-YVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~----~~--g-~~egAv~SG~~aA~~il~~l~~ 300 (307)
-+|+++||-||+..... |+ | ++-.|+.+|+.|++.+.+..+.
T Consensus 521 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 521 GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcc
Confidence 45889999999865321 22 2 5677899999999999766543
No 322
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=36.43 E-value=40 Score=31.09 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCcCCCCCCCCChhhhhHhhC----CCCcEEEecccccCC-CCc-chhHHHHHHHHH
Q 021822 240 KGSYSNWPNGYTLHSYHDLQQ----PFGRIYFAGEHTNST-YLG-YVDGAYFSGINT 290 (307)
Q Consensus 240 ~g~y~~~~~g~~~~~~~~~~~----p~~~l~~aGd~~~~~-~~g-~~egAv~SG~~a 290 (307)
.|+|..++|..+.++...+.. |.++|+|+||+..++ |.- ..+-|+..+..-
T Consensus 52 ~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~l 108 (420)
T TIGR02810 52 FGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAAL 108 (420)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHH
Confidence 388988888877665544432 435899999999985 221 234444444433
No 323
>PLN02985 squalene monooxygenase
Probab=36.29 E-value=1.4e+02 Score=28.71 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCe---EEEEeCCCcE--EEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNK---VIITTEDGSV--YHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~---v~V~~~~G~~--~~ad~VI~a~P~~ 108 (307)
+.+.+.|.+.+.+. .+.+++.+ +|+++..+++. +.+...+|++ +.||.||.|-...
T Consensus 147 ~~l~~~L~~~a~~~-----~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~ 207 (514)
T PLN02985 147 GRFVQRLRQKASSL-----PNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCY 207 (514)
T ss_pred HHHHHHHHHHHHhC-----CCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCc
Confidence 46778888777542 25677755 56666555443 3444456754 5689999888664
No 324
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=35.90 E-value=75 Score=30.18 Aligned_cols=55 Identities=7% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-eE-EEEe--CCC--cEEEcCEEEEecCh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-KV-IITT--EDG--SVYHANYVIVTVSV 107 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v-~V~~--~~G--~~~~ad~VI~a~P~ 107 (307)
.|.+.|.+.+.+. .+.+|+-++.+..|-.+++ .+ .|.+ .++ ..+.++.||+|+.-
T Consensus 134 ~I~~~L~~~v~~~-----p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 134 EIMTALLKKVRNR-----PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHHHHHHhcC-----CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 6777888888643 4778999999999998887 44 4444 333 35789999999854
No 325
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=35.83 E-value=1.5e+02 Score=28.28 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC--C-e-E-EEEe-CCCc--EE---EcCEEEEecCh
Q 021822 44 RGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK--N-K-V-IITT-EDGS--VY---HANYVIVTVSV 107 (307)
Q Consensus 44 gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~--~-~-v-~V~~-~~G~--~~---~ad~VI~a~P~ 107 (307)
.-+.+|+.=|.+-|++ .|+++++|++|+.|+.+. + + + .+.+ .+|+ ++ .-|.|++|...
T Consensus 204 NQyeSii~Pl~~~L~~------~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 204 NQYESIILPLIRYLKS------QGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred ccHHHHHHHHHHHHHH------CCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCc
Confidence 4588999999999987 499999999999999753 2 2 1 2222 4553 22 46788887644
No 326
>PRK07512 L-aspartate oxidase; Provisional
Probab=35.26 E-value=54 Score=31.41 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=28.8
Q ss_pred CCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+..+.+.+| .+-.|+..|++|++.+.+..
T Consensus 352 t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 352 SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999986432223 35567889999999887654
No 327
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=34.95 E-value=51 Score=30.66 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=28.1
Q ss_pred hCCCCcEEEecccccCC-----CC-c-chhHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNST-----YL-G-YVDGAYFSGINTANALIKC 297 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~-----~~-g-~~egAv~SG~~aA~~il~~ 297 (307)
-+|+++||-||+....+ |. | .+-.|+.+|+.|++.+.+.
T Consensus 384 g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 35889999999864321 11 2 4667899999999988665
No 328
>PLN02661 Putative thiazole synthesis
Probab=34.73 E-value=46 Score=30.24 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=29.8
Q ss_pred CcEEEecccccCCC----Cc-chhHHHHHHHHHHHHHHHHHhh
Q 021822 263 GRIYFAGEHTNSTY----LG-YVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 263 ~~l~~aGd~~~~~~----~g-~~egAv~SG~~aA~~il~~l~~ 300 (307)
++||.+|....-.+ .| ..-|=+.||++||+.|+++|+.
T Consensus 287 pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 287 PGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred CCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 89999999876321 23 4556689999999999999974
No 329
>PLN02661 Putative thiazole synthesis
Probab=34.64 E-value=1.6e+02 Score=26.77 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeE-EEEe------CC--C------cEEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKV-IITT------ED--G------SVYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~V~~------~~--G------~~~~ad~VI~a~P~ 107 (307)
..+.+.|.+.+.+. .|.+|+.++.|..+..+++++ .|.. .+ + ..+.|++||+|+.-
T Consensus 172 ~e~~stLi~ka~~~-----~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 172 ALFTSTIMSKLLAR-----PNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 45566677655431 368999999999999877653 2321 11 1 25799999999973
No 330
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=34.30 E-value=50 Score=31.01 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=31.3
Q ss_pred CCCCcEEEecccccC-----CCC--cchhHHHHHHHHHHHHHHHHHhhh
Q 021822 260 QPFGRIYFAGEHTNS-----TYL--GYVDGAYFSGINTANALIKCLKHF 301 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~-----~~~--g~~egAv~SG~~aA~~il~~l~~~ 301 (307)
+|+++||-||+.... +|. ..+-.|+.+|+.|++.+.+..+++
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~~ 464 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQHE 464 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhhc
Confidence 488999999987432 121 246678999999999998877654
No 331
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.06 E-value=58 Score=31.74 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=29.3
Q ss_pred CCCCcEEEecccccCCCC-------cchhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYL-------GYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~-------g~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+-...+.+ ..+-.|+.+|++|++.+.+..
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 467999999998653222 246778999999999887654
No 332
>PRK02106 choline dehydrogenase; Validated
Probab=34.05 E-value=87 Score=30.35 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=30.8
Q ss_pred CCeeecCCeeEEEEecCCeE-EEEeC--CCc--EEEcCEEEEecChh
Q 021822 67 DPRLKLKKTVRKINQSKNKV-IITTE--DGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v-~V~~~--~G~--~~~ad~VI~a~P~~ 108 (307)
+.+|++++.|++|..+++++ .|.+. ++. .+.++.||++.-.-
T Consensus 215 nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai 261 (560)
T PRK02106 215 NLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAI 261 (560)
T ss_pred CcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCC
Confidence 68999999999999886543 35443 332 35799999998653
No 333
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=33.96 E-value=1.6e+02 Score=27.71 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec---CCeEEEEeCC-------C--cEEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS---KNKVIITTED-------G--SVYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~---~~~v~V~~~~-------G--~~~~ad~VI~a~P~~ 108 (307)
.+-+.|++...+ .|.+++.+ .|++|+.. ++.+.|++.+ | .++.||.||-|-...
T Consensus 133 ~~d~~L~~~A~~------~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~ 198 (450)
T PLN00093 133 VLDSFLRERAQS------NGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGAN 198 (450)
T ss_pred HHHHHHHHHHHH------CCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcc
Confidence 344556665554 48899765 58888753 2345565422 3 468999999998764
No 334
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=33.73 E-value=1e+02 Score=19.61 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCeeecCCeeEEEEecCCeEEEEeCCCcEE
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITTEDGSVY 96 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~ 96 (307)
|....+..+|++++...+..+|.+.||.++
T Consensus 18 ~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel 47 (55)
T PF09465_consen 18 GSSLYYEGKVLSYDSKSDRYTVLYEDGTEL 47 (55)
T ss_dssp TTS-EEEEEEEEEETTTTEEEEEETTS-EE
T ss_pred CCCcEEEEEEEEecccCceEEEEEcCCCEE
Confidence 566788899999999888899999999653
No 335
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=33.63 E-value=47 Score=32.19 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=30.5
Q ss_pred hCCCCcEEEecccccC----CCC--c-chhHHHHHHHHHHHHHHHHHh
Q 021822 259 QQPFGRIYFAGEHTNS----TYL--G-YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~----~~~--g-~~egAv~SG~~aA~~il~~l~ 299 (307)
-+|+++||.||+.... .|+ | .+-.|+.+|+.|++.+.+.++
T Consensus 504 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 504 GSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred CCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 3588999999986532 122 2 577899999999999876654
No 336
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=33.38 E-value=64 Score=29.79 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=28.1
Q ss_pred HhhCC-CCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 257 DLQQP-FGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 257 ~~~~p-~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
.+... .++|||||+-.-. .|+.| |..+|..|+..+...+..
T Consensus 349 ~l~~k~~~~lf~AGqi~G~--~Gy~e-aaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 349 TLETKKIPGLFFAGQINGT--EGYEE-AAAQGLIAGINAARRLQG 390 (392)
T ss_dssp TSBBSSSBTEEE-GGGGTB---SHHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceEECCCCCceECCCCcch--hHHHH-HHHHHHHHHHHHHHHHcC
Confidence 44444 5899999998766 47666 556898888887776653
No 337
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=33.35 E-value=41 Score=32.20 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=33.1
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||.|||-.... ...+..|+..|..||..+.+.+..
T Consensus 472 l~Ts~p~IyAaGDv~~~~-~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 472 GATSVPGVFAAGDCTTVP-YKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred CCCCCCCEEECccccCCC-CCEEEEhhhhHHHHHHHHHHHHhh
Confidence 444558999999998753 234778999999999999888765
No 338
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=32.98 E-value=48 Score=31.56 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=30.0
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +..++-|+..|+.+|+.|+.
T Consensus 314 l~Ts~~~IyA~GDv~~~--~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTDR--VMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 44556899999998764 45788899999999999874
No 339
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=32.93 E-value=55 Score=29.50 Aligned_cols=30 Identities=40% Similarity=0.729 Sum_probs=19.9
Q ss_pred CcEEEecccccCCCCcchhHH---HHHHHHHHHHH
Q 021822 263 GRIYFAGEHTNSTYLGYVDGA---YFSGINTANAL 294 (307)
Q Consensus 263 ~~l~~aGd~~~~~~~g~~egA---v~SG~~aA~~i 294 (307)
++|+|||.-+... |++|.| +..|+.||+..
T Consensus 335 p~l~fAGQitG~E--GYveSaA~Gllag~naa~~~ 367 (439)
T COG1206 335 PNLFFAGQITGVE--GYVESAASGLLAGINAARLA 367 (439)
T ss_pred CCcEEeeeeecch--hhhHHhhhhHHHhhHHHHHh
Confidence 6899999988764 777754 33444444443
No 340
>PRK09077 L-aspartate oxidase; Provisional
Probab=32.49 E-value=59 Score=31.32 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=29.5
Q ss_pred CCCCcEEEecccccCCCC-------cchhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYL-------GYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~-------g~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+..+.+.+ ..+-.|+..|++|++.+.+..
T Consensus 364 t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 364 TDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred cccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 578999999998643223 256778899999999887654
No 341
>PRK14694 putative mercuric reductase; Provisional
Probab=32.29 E-value=45 Score=31.43 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=29.9
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +..+.-|...|+.||..|+.
T Consensus 298 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQ--PQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cccCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHhcC
Confidence 44556899999998764 46788999999999998863
No 342
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=32.28 E-value=1.4e+02 Score=27.99 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=29.0
Q ss_pred CCCeeecCCeeEEEEecC-CeE-EEEeC---------CC-----------cEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSK-NKV-IITTE---------DG-----------SVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~-~~v-~V~~~---------~G-----------~~~~ad~VI~a~P~ 107 (307)
.|.+|++++.+.+|..++ +++ .|.+. +| .++.+|.||+++..
T Consensus 322 ~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 322 EGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred CCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 388999999999997643 333 23321 22 25899999998865
No 343
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=32.08 E-value=33 Score=31.65 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=34.3
Q ss_pred CCCCcCCCCCCCCChhhhhHhhC----CCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHH
Q 021822 238 LYKGSYSNWPNGYTLHSYHDLQQ----PFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKC 297 (307)
Q Consensus 238 ~~~g~y~~~~~g~~~~~~~~~~~----p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~ 297 (307)
...|+|...+|..+..+...+.. |.++|+|+||+..++ .|-+-.-+.+..-|..++..
T Consensus 54 nq~GGYTGmtP~dF~~~V~~iA~~~g~~~~~iiLGGDHLGP~--~w~~lpaeeAM~~A~~li~a 115 (424)
T PF08013_consen 54 NQFGGYTGMTPADFRDFVREIADEVGFPRDRIILGGDHLGPN--PWQHLPAEEAMAKAKELIRA 115 (424)
T ss_dssp STT-TTTTB-HHHHHHHHHHHHHHCT--GGGEEEEEEEESSC--CCTTSBHHHHHHHHHHHHHH
T ss_pred cccCCcCCCCHHHHHHHHHHHHHHcCCchhhEEecCCCCCcc--cccCCCHHHHHHHHHHHHHH
Confidence 33488987777766655444433 346799999999985 33443444555555555554
No 344
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=31.68 E-value=47 Score=31.16 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=29.1
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +.....|+..|+.||..|+.
T Consensus 298 ~~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGF--PSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred cccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 34455899999997643 45678899999999999873
No 345
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.58 E-value=67 Score=31.40 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=31.4
Q ss_pred hCCCCcEEEecccccC----CCC--c-chhHHHHHHHHHHHHHHHHHhh
Q 021822 259 QQPFGRIYFAGEHTNS----TYL--G-YVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~----~~~--g-~~egAv~SG~~aA~~il~~l~~ 300 (307)
-+|+++||-||+.... .|+ | .+-.|+.+|+.|++.+.+....
T Consensus 524 g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 524 DSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred CCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 4588999999987532 122 2 3677899999999999887655
No 346
>PRK13748 putative mercuric reductase; Provisional
Probab=31.56 E-value=46 Score=32.15 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=29.9
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +..+..|+..|+.||..|+.
T Consensus 391 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQ--PQFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cccCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHcC
Confidence 45556899999998764 46788899999999999863
No 347
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=82 Score=28.67 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC---CeEEEEeCCCcEEEcCEEEEecChhhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK---NKVIITTEDGSVYHANYVIVTVSVGVL 110 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~---~~v~V~~~~G~~~~ad~VI~a~P~~~l 110 (307)
.|..+|.+.+++ -..+|.--+++++++... +-..|++.+|....++.||+++...+=
T Consensus 267 kl~~ale~Hv~~------Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR 326 (520)
T COG3634 267 KLAAALEAHVKQ------YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWR 326 (520)
T ss_pred HHHHHHHHHHhh------cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchh
Confidence 677777777765 467888889999998853 347899999988999999999988653
No 348
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.42 E-value=54 Score=31.81 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=28.3
Q ss_pred hCCCCcEEEecccccC----CCC--c-chhHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNS----TYL--G-YVDGAYFSGINTANALIK 296 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~----~~~--g-~~egAv~SG~~aA~~il~ 296 (307)
.+|+++||-||+.... .|+ | .+-.|+.+|+.|++.+.+
T Consensus 511 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 511 GSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 4588999999998642 132 3 456789999999998764
No 349
>PRK06175 L-aspartate oxidase; Provisional
Probab=30.88 E-value=68 Score=29.97 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=29.3
Q ss_pred CCCCcEEEecccccCCCC-------cchhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYL-------GYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~-------g~~egAv~SG~~aA~~il~~l 298 (307)
+|+++||-||+..+.+.+ ..+-.|+..|++|++.+...+
T Consensus 342 t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 342 TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 688999999998642212 246678999999999986644
No 350
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.48 E-value=66 Score=31.49 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=29.0
Q ss_pred CCCcEEEecccccCCCC-------cchhHHHHHHHHHHHHHHHHH
Q 021822 261 PFGRIYFAGEHTNSTYL-------GYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 261 p~~~l~~aGd~~~~~~~-------g~~egAv~SG~~aA~~il~~l 298 (307)
++++||-||+....+.+ .++-.|+..|++|++.+.+..
T Consensus 382 ~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 382 PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 67999999997653222 257789999999999887653
No 351
>PRK06370 mercuric reductase; Validated
Probab=29.66 E-value=59 Score=30.55 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred HhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 257 DLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 257 ~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
.+++..++||.+||-... +.....|...|+.||+.|+.
T Consensus 296 ~l~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNGR--GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 345556899999998765 34577899999999999875
No 352
>PRK08071 L-aspartate oxidase; Provisional
Probab=29.52 E-value=70 Score=30.64 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=28.5
Q ss_pred hCCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKC 297 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~ 297 (307)
++++++||-||+..+.+.+| .+-.|+..|++|++.+...
T Consensus 342 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 342 ETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999986422222 4667888999999988654
No 353
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.20 E-value=53 Score=31.02 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=29.3
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +...+.|+..|+.||+.|+.
T Consensus 300 ~~t~~p~VyAiGDv~~~--~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQ--PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcCC--cccHHHHHHHHHHHHHHHcC
Confidence 44556899999997643 45678899999999999874
No 354
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=28.98 E-value=69 Score=29.89 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=43.7
Q ss_pred HHHhCCCCCCCCCceEEecccCcCCCCCCc-CCCCCCCCCh--hhhh--HhhCC-CCcEEEecccccCCCCcch-----h
Q 021822 213 KKMFGNGKQIPEPDTMLIPKWWSNRLYKGS-YSNWPNGYTL--HSYH--DLQQP-FGRIYFAGEHTNSTYLGYV-----D 281 (307)
Q Consensus 213 ~~~~p~g~~~~~~~~~~~~~W~~~~~~~g~-y~~~~~g~~~--~~~~--~~~~p-~~~l~~aGd~~~~~~~g~~-----e 281 (307)
+-+| ++++.++. ....|.+..|+.+. |. .-|... ..++ ..-.+ .+|||.+|+-+.. +...- =
T Consensus 331 Epif--~l~v~~~~--~r~~w~~~~~~~~~p~~--~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g-~d~~~~~~g~G 403 (422)
T PRK05329 331 EPIF--GLDVLQPA--DRADWYQRDFFAPHPFL--QFGVATDATLRPLDSQGGPVIENLYAAGAVLGG-YDPIREGCGSG 403 (422)
T ss_pred cccC--CCCCCCCC--chhhhhhhhhccCCchh--hcCceECCCcCcccCCCCeeccceEEeeehhcC-CchHHhCCCch
Confidence 3445 56554433 23568776666432 22 222211 1222 11122 5899999998775 21111 1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021822 282 GAYFSGINTANALIKCL 298 (307)
Q Consensus 282 gAv~SG~~aA~~il~~l 298 (307)
-|+.||..||+.|++..
T Consensus 404 va~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 404 VALATALHAAEQIAEEA 420 (422)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 38999999999998754
No 355
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.80 E-value=57 Score=30.70 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=29.6
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +.....|...|+.||+.|+.
T Consensus 299 ~~Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cccCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 44556899999998754 45688899999999999874
No 356
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=28.64 E-value=56 Score=30.61 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=29.5
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +.....|+..|+.||..|+.
T Consensus 294 ~~ts~~~IyA~GD~~~~--~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVNGK--PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecCCC--ccchhHHHHHHHHHHHHhcC
Confidence 44456899999998764 34577899999999999875
No 357
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=28.61 E-value=78 Score=30.04 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=29.0
Q ss_pred hCCCCcEEEecccccCCCC-------cchhHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYL-------GYVDGAYFSGINTANALIKC 297 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~-------g~~egAv~SG~~aA~~il~~ 297 (307)
++++++||-||+..+.+.+ ..+-.|+.+|++|++.+.+.
T Consensus 343 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 343 RTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 3678999999998642222 24567899999999998764
No 358
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.35 E-value=83 Score=30.35 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=29.0
Q ss_pred hCCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
++++++||-||+.... .+| .+-.|+.+|++|++.+.+.+
T Consensus 358 ~t~IpGLyAaGE~~gg-~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 358 ETNIPGLFACGEVAGG-VHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred cccCCCeEeccccccC-CCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 3688999999997532 122 35578999999999987654
No 359
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=28.26 E-value=66 Score=30.58 Aligned_cols=38 Identities=21% Similarity=0.105 Sum_probs=29.1
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... .+....-|+..|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~~-~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILED-KQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCC-CccchHHHHHHHHHHHHHHhc
Confidence 44556899999998753 234567899999999999874
No 360
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=28.25 E-value=63 Score=33.82 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=30.2
Q ss_pred CCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 262 FGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 262 ~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
.++||.|||.... +.+..|+.+|..||..|+..++.
T Consensus 438 v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 438 VQGCILAGAANGL---FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999997643 45788999999999999998875
No 361
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=27.80 E-value=75 Score=29.75 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=29.0
Q ss_pred HhhC-CCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 257 DLQQ-PFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 257 ~~~~-p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
.++. ..++|||||+-+.. -|+. -|..+|..|+..+...+.
T Consensus 324 ~l~~k~~~~l~~AGqi~g~--~Gy~-ea~a~G~~Ag~n~~~~~~ 364 (436)
T PRK05335 324 TLQLKKRPNLFFAGQITGV--EGYV-ESAASGLLAGINAARLAL 364 (436)
T ss_pred hccccCCCCEEeeeeecCc--hHHH-HHHHHHHHHHHHHHHHhc
Confidence 4443 34799999998865 3656 578888888887776654
No 362
>PLN02507 glutathione reductase
Probab=27.80 E-value=60 Score=30.96 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=29.9
Q ss_pred HhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 257 DLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 257 ~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
.+++..++||.+||-... ....+.|...|+.+|+.|+.
T Consensus 325 ~~~Ts~p~IyAiGDv~~~--~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNR--INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCcCCCCCEEEeeEcCCC--CccHHHHHHHHHHHHHHHcC
Confidence 345556899999998764 34578899999999998863
No 363
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=27.71 E-value=62 Score=31.47 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.2
Q ss_pred hCCCCcEEEecccccC----CCC--c-chhHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNS----TYL--G-YVDGAYFSGINTANALIK 296 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~----~~~--g-~~egAv~SG~~aA~~il~ 296 (307)
-+|+++||-||+.+.. .|+ | .+-.|+.+|+.|++.+.+
T Consensus 519 g~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 519 GSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 3588999999987532 233 2 577889999999998753
No 364
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.60 E-value=2e+02 Score=28.21 Aligned_cols=60 Identities=8% Similarity=-0.144 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec-CCeE-EEE--eC-CCc--EEEcCEEEEecChhh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS-KNKV-IIT--TE-DGS--VYHANYVIVTVSVGV 109 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v-~V~--~~-~G~--~~~ad~VI~a~P~~~ 109 (307)
.|.+.|.+.+.+. +...+.+|..+++++++..+ +++| .|. .. +|+ .+.++.||+|+--..
T Consensus 134 ~i~~~L~~~~~~~--~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 134 QLLYALDEQVRRY--EVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHhh--hccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 5777777665431 00012568899999998875 3443 233 22 344 468999999997643
No 365
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=27.59 E-value=80 Score=30.85 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCCCcEEEecccccCCCC-------cchhHHHHHHHHHHHHHHHHH
Q 021822 260 QPFGRIYFAGEHTNSTYL-------GYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~-------g~~egAv~SG~~aA~~il~~l 298 (307)
+++++||-||+..+.+.+ ..+-.|+..|++|++.+.+..
T Consensus 368 t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 368 TRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred cccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 578999999997543222 256678999999999887653
No 366
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=27.13 E-value=61 Score=31.64 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=30.5
Q ss_pred hCCCCcEEEecccccC----CCC--c-chhHHHHHHHHHHHHHHHHHhh
Q 021822 259 QQPFGRIYFAGEHTNS----TYL--G-YVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~----~~~--g-~~egAv~SG~~aA~~il~~l~~ 300 (307)
-+|+++||-||+.... .|+ | .+-.|+.+|+.|++.+.+.+.-
T Consensus 525 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 573 (581)
T PRK06134 525 GQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASGY 573 (581)
T ss_pred CCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCCc
Confidence 3588999999975421 121 3 5677899999999999776554
No 367
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=27.12 E-value=71 Score=30.88 Aligned_cols=38 Identities=29% Similarity=0.536 Sum_probs=27.3
Q ss_pred hCCCCcEEEeccccc---CCCC------c-chhHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTN---STYL------G-YVDGAYFSGINTANALIK 296 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~---~~~~------g-~~egAv~SG~~aA~~il~ 296 (307)
-+|+++||-||+... .+.+ | .+-.|+.+|+.|++.+.+
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 357899999999863 1111 2 466789999999988753
No 368
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.06 E-value=62 Score=30.38 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=29.6
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||-+||-... +.....|+..|+.+|+.|+.
T Consensus 297 ~~t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGG--PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CccCCCCEEEeeecCCC--cchHHHHHHHHHHHHHHHcC
Confidence 44556899999998753 45678899999999999875
No 369
>PRK06444 prephenate dehydrogenase; Provisional
Probab=26.65 E-value=65 Score=26.59 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=13.5
Q ss_pred EcCEEEEecChhhhcc
Q 021822 97 HANYVIVTVSVGVLQS 112 (307)
Q Consensus 97 ~ad~VI~a~P~~~l~~ 112 (307)
.||.||+++|+..+..
T Consensus 31 ~~DlVilavPv~~~~~ 46 (197)
T PRK06444 31 KADHAFLSVPIDAALN 46 (197)
T ss_pred CCCEEEEeCCHHHHHH
Confidence 6899999999987654
No 370
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=26.21 E-value=2.6e+02 Score=25.67 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEec---CCeEEEEe--CC-----C--cEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQS---KNKVIITT--ED-----G--SVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~---~~~v~V~~--~~-----G--~~~~ad~VI~a~P~~ 108 (307)
..+-+.|++...+ .|.+|+.++ +..|... ++.+.|+. .+ | .++.||.||.|.-..
T Consensus 93 ~~~d~~L~~~a~~------~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 93 EVLDSFLRRRAAD------AGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred HHHHHHHHHHHHH------CCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 3444456666554 489998775 7777542 23444543 22 3 368999999998764
No 371
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=25.85 E-value=1.8e+02 Score=28.87 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCeeecCCeeEEEEecCCeEEEEe---C---------------CCc--EEEcCEEEEecCh
Q 021822 67 DPRLKLKKTVRKINQSKNKVIITT---E---------------DGS--VYHANYVIVTVSV 107 (307)
Q Consensus 67 g~~i~l~~~V~~I~~~~~~v~V~~---~---------------~G~--~~~ad~VI~a~P~ 107 (307)
|.+|++++.+.+|..+++++.++. . +|+ .+.+|.||+++..
T Consensus 375 GV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 375 GVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred CCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 778999999999987665543221 1 232 4799999999975
No 372
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=84 Score=27.89 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=33.9
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
+++..++||-|||-....+. -+..|...|-.||..+.+.+..
T Consensus 261 ~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred cccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhh
Confidence 56677999999999887433 4778999999999988887764
No 373
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=25.52 E-value=2.8e+02 Score=27.44 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC---CeE-EEE---eCCCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK---NKV-IIT---TEDGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~---~~v-~V~---~~~G~--~~~ad~VI~a~P~~ 108 (307)
.+.+.|.+.+.+ .+.+|+.+++|+++..++ +++ .|. ..+|+ .+.++.||+|+-..
T Consensus 127 ~~~r~l~~~l~~------~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKN------ALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHh------CCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 344444444443 256899999999999764 343 232 23564 47899999999774
No 374
>PLN02852 ferredoxin-NADP+ reductase
Probab=25.41 E-value=87 Score=29.91 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 260 QPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
++.++||.+||-... -.|.+-.++..|..+|+.|++.+..
T Consensus 384 T~ipGvyAaGDi~~G-p~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 384 DTEPGLYVVGWLKRG-PTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred cCCCCEEEeeeEecC-CCCeeeecHhhHHHHHHHHHHHHHc
Confidence 456899999998875 3568889999999999999999764
No 375
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=24.98 E-value=73 Score=29.90 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=30.0
Q ss_pred HhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 257 DLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 257 ~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
.+++..++||.+||-... +.....|...|+.||..|+.
T Consensus 291 ~~~Ts~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 291 TLRTSNPGIYAAGDVTGG--LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred CccCCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHhcC
Confidence 345556899999998765 34567899999999999874
No 376
>PRK09897 hypothetical protein; Provisional
Probab=24.81 E-value=1.7e+02 Score=28.26 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=34.4
Q ss_pred CeeecCCeeEEE--EecCCeEEEEeCCCcEEEcCEEEEecChhhhcc
Q 021822 68 PRLKLKKTVRKI--NQSKNKVIITTEDGSVYHANYVIVTVSVGVLQS 112 (307)
Q Consensus 68 ~~i~l~~~V~~I--~~~~~~v~V~~~~G~~~~ad~VI~a~P~~~l~~ 112 (307)
+.+..-.-++.| +.++++..+.+.++ ...+|.||-|+....|+.
T Consensus 405 G~L~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~a~G~~~~~~ 450 (534)
T PRK09897 405 GIIHILALGEDYEMEINESRTVIKTEDN-SYSFDVFIDARGQRPLKV 450 (534)
T ss_pred CCEEEEecCccceeEecCCeEEEEeCCC-ceEeCEEEECCCCCCCcc
Confidence 566666777755 77778888888764 789999999999988875
No 377
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=24.57 E-value=84 Score=29.41 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=29.3
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKC 297 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~ 297 (307)
++..++||.+||-... +.....|+..|+.+|+.|...
T Consensus 296 ~t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGG--PMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred ccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcCC
Confidence 4445799999998754 356788999999999998753
No 378
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=24.56 E-value=83 Score=29.73 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=29.0
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +.....|...|+.||..|+.
T Consensus 310 ~~Ts~~~VyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRG--PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccCC--cchHHHHHHHHHHHHHHHcC
Confidence 34455899999998764 34578899999999999864
No 379
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=1.1e+02 Score=27.99 Aligned_cols=65 Identities=22% Similarity=0.350 Sum_probs=45.4
Q ss_pred ccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCC-cEEEcCEEEEec
Q 021822 32 DFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDG-SVYHANYVIVTV 105 (307)
Q Consensus 32 ~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~a~ 105 (307)
.||..-+.++ +-|.+.|++-.++.-.- -|+...||+++.+|....+ | .+..+| .+..+..||...
T Consensus 215 ~yg~~pyLyp-~YGl~El~QGFaRssav------~GgtymLn~~i~ein~tk~-v-~~v~~~~~~~ka~KiI~~~ 280 (434)
T COG5044 215 DYGKSPYLYP-RYGLGELSQGFARSSAV------YGGTYMLNQAIDEINETKD-V-ETVDKGSLTQKAGKIISSP 280 (434)
T ss_pred ccCCCcceee-ccCchhhhHHHHHhhhc------cCceeecCcchhhhccccc-e-eeeecCcceeecCcccCCc
Confidence 4555556666 77899999988876532 3999999999999998766 3 222333 356677776543
No 380
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=24.09 E-value=1.1e+02 Score=29.86 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=30.1
Q ss_pred hCCCCcEEEecccccC----CCC--c-chhHHHHHHHHHHHHHHHHHhh
Q 021822 259 QQPFGRIYFAGEHTNS----TYL--G-YVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~----~~~--g-~~egAv~SG~~aA~~il~~l~~ 300 (307)
-+|+++||-||+.... .|+ | .+-.|+.+|+.|++.+.+.+.+
T Consensus 526 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 574 (578)
T PRK12843 526 GQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTLA 574 (578)
T ss_pred CCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhhc
Confidence 3588999999976532 122 3 3556899999999998776544
No 381
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=23.61 E-value=92 Score=29.77 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=29.3
Q ss_pred CCCCcEEEecccccCC----CC-c-chhHHHHHHHHHHHHHHHHHh
Q 021822 260 QPFGRIYFAGEHTNST----YL-G-YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 260 ~p~~~l~~aGd~~~~~----~~-g-~~egAv~SG~~aA~~il~~l~ 299 (307)
+|+++||-||+....- +. | .+-.|+.+|++|++.+.+..+
T Consensus 459 ~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 459 SPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred CEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 5889999999975321 11 1 466789999999998877654
No 382
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=23.50 E-value=73 Score=30.11 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=23.8
Q ss_pred eecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 70 LKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 70 i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
+.++..|..+..+ + .|.+.||+.+.+|.||+++...
T Consensus 252 v~~~~~I~~~~~~-g--~V~f~DG~~~~~D~Ii~~TGy~ 287 (461)
T PLN02172 252 LWMHSEIDTAHED-G--SIVFKNGKVVYADTIVHCTGYK 287 (461)
T ss_pred eEECCcccceecC-C--eEEECCCCCccCCEEEECCcCC
Confidence 4444455544322 2 3667889888999999998764
No 383
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.48 E-value=87 Score=29.51 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=29.8
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +...+-|...|+.||+.|+.
T Consensus 301 ~~Ts~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred eecCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45556899999998764 34678899999999999874
No 384
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=23.29 E-value=99 Score=29.19 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=31.0
Q ss_pred HhhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 257 DLQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 257 ~~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
.+++..++||-+||-+... ...+-|...|+.||+.|+.
T Consensus 297 ~~~Tnvp~IyA~GDV~~~~--~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 297 QMTTNVPGIYAIGDVIGGP--MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccccCCCCEEEeeccCCCc--ccHhHHHHHHHHHHHHHhC
Confidence 3444468999999997763 3788999999999999986
No 385
>PRK12839 hypothetical protein; Provisional
Probab=23.24 E-value=1e+02 Score=30.01 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=28.9
Q ss_pred hCCCCcEEEecccccC----CCC--c-chhHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNS----TYL--G-YVDGAYFSGINTANALIKC 297 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~----~~~--g-~~egAv~SG~~aA~~il~~ 297 (307)
-+|+++||-||+.+.. .|+ | .+-.|+.+|+.|++.+.+.
T Consensus 522 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 522 DTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 4588999999986432 122 2 5678999999999988654
No 386
>PRK07846 mycothione reductase; Reviewed
Probab=23.21 E-value=86 Score=29.44 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=29.2
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +...+.|...|+.+|+.|+.
T Consensus 288 ~~Ts~p~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 288 QRTSAEGVFALGDVSSP--YQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cccCCCCEEEEeecCCC--ccChhHHHHHHHHHHHHHcC
Confidence 44556899999998865 34567899999999998874
No 387
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=22.82 E-value=2.5e+02 Score=27.19 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCCeeecCCeeEEEEecCCe-E-----EEEe----C-------CC--cEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSKNK-V-----IITT----E-------DG--SVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~-v-----~V~~----~-------~G--~~~~ad~VI~a~P~ 107 (307)
.|.+|++++.+.+|..++++ + ++.. . +| .++.+|.||+++..
T Consensus 318 ~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 318 EGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred cCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 37889999999999866543 2 2221 1 22 25899999999875
No 388
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=22.77 E-value=99 Score=33.08 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-----C----eE-EEE--eC---CCc--EEEcCEEEEecChh
Q 021822 48 TVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-----N----KV-IIT--TE---DGS--VYHANYVIVTVSVG 108 (307)
Q Consensus 48 ~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-----~----~v-~V~--~~---~G~--~~~ad~VI~a~P~~ 108 (307)
.+.+.|.+.+.++.+ .|.+|+++++|+++..++ + +| .|. .. +|+ .+.|+.||+|+--.
T Consensus 545 ~i~~~l~~~~~~~~~---~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf 619 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLS---GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGF 619 (1167)
T ss_pred HHHHHHHHHHHhhcc---CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCc
Confidence 455566655542100 278999999999999753 1 33 233 32 564 47899999999764
No 389
>PRK08401 L-aspartate oxidase; Provisional
Probab=22.41 E-value=1.2e+02 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=27.7
Q ss_pred hCCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKC 297 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~ 297 (307)
++++++||-||+....+.+| .+-.|+.+|++|++.+.+.
T Consensus 320 ~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 320 RTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred cccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 36789999999986422222 2344788999999988653
No 390
>PRK11445 putative oxidoreductase; Provisional
Probab=22.34 E-value=1.1e+02 Score=27.58 Aligned_cols=36 Identities=19% Similarity=0.055 Sum_probs=28.6
Q ss_pred CcEEEecccccCCC---CcchhHHHHHHHHHHHHHHHHH
Q 021822 263 GRIYFAGEHTNSTY---LGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 263 ~~l~~aGd~~~~~~---~g~~egAv~SG~~aA~~il~~l 298 (307)
+++.++||+-+.-. .+.+..|+.+|..+|+.|.+..
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~ 302 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP 302 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence 68999999966422 2469999999999999997653
No 391
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=22.26 E-value=1.3e+02 Score=20.41 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=14.6
Q ss_pred eEEEEecCC-eEEEEeCCCcEE
Q 021822 76 VRKINQSKN-KVIITTEDGSVY 96 (307)
Q Consensus 76 V~~I~~~~~-~v~V~~~~G~~~ 96 (307)
|.+|...++ ++.|++.||++.
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~ 22 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETR 22 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EE
T ss_pred CeEEEEcCCcEEEEEEcCCCEE
Confidence 456777666 788999999654
No 392
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=22.19 E-value=91 Score=29.28 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=29.1
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +...+-|...|+.+|+.|+.
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 291 GRTSARGVWALGDVSSP--YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred cccCCCCEEEeecccCc--ccChhHHHHHHHHHHHHhcC
Confidence 44556899999998765 34567799999999999874
No 393
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=22.19 E-value=1.3e+02 Score=27.55 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=27.3
Q ss_pred CcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHhh
Q 021822 263 GRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLKH 300 (307)
Q Consensus 263 ~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~~ 300 (307)
++||+.+.-=+- -.+||.+..+|+.+|..+.++...
T Consensus 315 ~glyY~n~iE~~--aStME~sai~akNvA~L~~~~~~~ 350 (368)
T PF07156_consen 315 DGLYYTNAIESA--ASTMETSAIAAKNVALLIYDRWNG 350 (368)
T ss_pred CCeeEchhHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578886654222 358999999999999999887654
No 394
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=22.15 E-value=76 Score=29.26 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=26.5
Q ss_pred hHhh-CCCCcEEEecccccCC-CCc--chhHHHHHHHHHH
Q 021822 256 HDLQ-QPFGRIYFAGEHTNST-YLG--YVDGAYFSGINTA 291 (307)
Q Consensus 256 ~~~~-~p~~~l~~aGd~~~~~-~~g--~~egAv~SG~~aA 291 (307)
..|. +..++|||||+-+... ..| .+.-|+.||..|+
T Consensus 360 ~~m~~k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 360 KTMESKLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred hhhhhcCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 3454 3458999999988753 233 6888999999886
No 395
>PRK08275 putative oxidoreductase; Provisional
Probab=22.08 E-value=1.1e+02 Score=29.65 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=29.9
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l 298 (307)
.++..++||-|||....+ +-.+-.|+..|++|+..+.+.+
T Consensus 365 ~~t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 365 AETTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CccCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999976542 3457779999999998876654
No 396
>PRK13984 putative oxidoreductase; Provisional
Probab=21.91 E-value=2.4e+02 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCCeeecCCeeEEEEecCCeEE-EEe--------CCC-----------cEEEcCEEEEecChh
Q 021822 66 TDPRLKLKKTVRKINQSKNKVI-ITT--------EDG-----------SVYHANYVIVTVSVG 108 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~~~v~-V~~--------~~G-----------~~~~ad~VI~a~P~~ 108 (307)
.|.+|++++.+.+|..++++++ |.+ .+| .++.+|.||+++...
T Consensus 475 ~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 475 EGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred cCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 3788888888888865544432 221 112 358999999998653
No 397
>PTZ00052 thioredoxin reductase; Provisional
Probab=21.85 E-value=1.2e+02 Score=29.05 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=28.7
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
++..++||.+||-... .+...+-|+..|+.+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~~-~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEG-RPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecCC-CcccHHHHHHHHHHHHHHHhC
Confidence 3445799999997653 245678899999999999874
No 398
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.72 E-value=1.3e+02 Score=29.38 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=28.3
Q ss_pred hCCCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
.+++++||-||+.... .+| ++-.|+..|++|++.+.+.+
T Consensus 365 ~t~I~GLyAaGE~~~g-~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 365 MTNIPGLFAAGECDYS-YHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred CeECCCEEECcccccC-CCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4578999999997532 222 45578889999998887654
No 399
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=21.71 E-value=86 Score=26.80 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=24.8
Q ss_pred CcEEEecccccCCC---CcchhHHHHHHHHHHHHH
Q 021822 263 GRIYFAGEHTNSTY---LGYVDGAYFSGINTANAL 294 (307)
Q Consensus 263 ~~l~~aGd~~~~~~---~g~~egAv~SG~~aA~~i 294 (307)
+++.+.||+-+... ...++.|+++|..||+.|
T Consensus 261 ~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 261 GNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 78999999866432 236999999999988753
No 400
>PTZ00367 squalene epoxidase; Provisional
Probab=21.70 E-value=2.6e+02 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.2
Q ss_pred CcEEEecccccCCCC---cchhHHHHHHHHHHHHHH
Q 021822 263 GRIYFAGEHTNSTYL---GYVDGAYFSGINTANALI 295 (307)
Q Consensus 263 ~~l~~aGd~~~~~~~---g~~egAv~SG~~aA~~il 295 (307)
+++.+.||+.+..+| +.++-|++-+..-++.+.
T Consensus 337 ~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~ 372 (567)
T PTZ00367 337 KGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLT 372 (567)
T ss_pred CCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 689999999886432 368888888887776664
No 401
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=21.68 E-value=1.4e+02 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=28.3
Q ss_pred CCCcEEEecccccCCCCc-------chhHHHHHHHHHHHHHHHHH
Q 021822 261 PFGRIYFAGEHTNSTYLG-------YVDGAYFSGINTANALIKCL 298 (307)
Q Consensus 261 p~~~l~~aGd~~~~~~~g-------~~egAv~SG~~aA~~il~~l 298 (307)
++++||-||+..+.+.+| ++-.|+.+|++|++.+.+.+
T Consensus 385 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~ 429 (657)
T PRK08626 385 GLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429 (657)
T ss_pred ccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999986533233 35678889999998887654
No 402
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.63 E-value=93 Score=28.83 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=51.3
Q ss_pred cCcccccccccCCccc--cccccCCCceeeeCCCCHHHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecC-C-eE--
Q 021822 13 AEPTRISSLKNTFPRQ--LMEDFGEDSYFVADPRGFETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSK-N-KV-- 86 (307)
Q Consensus 13 ~~~~~~~s~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~-~v-- 86 (307)
.+|.+..|.+|+.-.- .|+-+.-.+.++. +-=+..=.+=-++.++ .++++++|+.|..-+ + ..
T Consensus 66 ~~PTs~ySFLNYL~~h~RLy~Fl~~e~f~i~-R~Ey~dY~~Waa~~l~----------~~rfg~~V~~i~~~~~d~~~~~ 134 (436)
T COG3486 66 VDPTSPYSFLNYLHEHGRLYEFLNYETFHIP-RREYNDYCQWAASQLP----------SLRFGEEVTDISSLDGDAVVRL 134 (436)
T ss_pred cCCCCchHHHHHHHHcchHhhhhhhhccccc-HHHHHHHHHHHHhhCC----------ccccCCeeccccccCCcceeEE
Confidence 4556666666665110 1221122334443 5556666666677764 599999999884322 2 23
Q ss_pred EEEeCCCcEEEcCEEEEecCh
Q 021822 87 IITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 87 ~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+.+.++.+++|+.+|+.+..
T Consensus 135 ~~~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 135 FVVTANGTVYRARNLVLGVGT 155 (436)
T ss_pred EEEcCCCcEEEeeeEEEccCC
Confidence 366777778999999998854
No 403
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=21.59 E-value=84 Score=30.35 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=18.4
Q ss_pred HHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEE-EcCEEEEecChhh
Q 021822 49 VVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVY-HANYVIVTVSVGV 109 (307)
Q Consensus 49 l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~-~ad~VI~a~P~~~ 109 (307)
+.+.|...|. .+.|.....|.++.. + .|.+.||+++ .+|.||+|+.-..
T Consensus 283 ind~l~~~i~--------~G~i~vk~~I~~~~~--~--~v~F~DGs~~e~vD~II~~TGY~~ 332 (531)
T PF00743_consen 283 INDELPNRIR--------SGRIKVKPDIKRFTE--N--SVIFEDGSTEEDVDVIIFCTGYKF 332 (531)
T ss_dssp ------------------------EE-EEEE-S--S--EEEETTSEEEEE-SEEEE---EE-
T ss_pred cccccccccc--------ccccccccccccccc--c--cccccccccccccccccccccccc
Confidence 4455555553 356666666776653 3 3557899764 6999999998753
No 404
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=21.53 E-value=75 Score=23.94 Aligned_cols=51 Identities=12% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCC-eEEEEe-CCCcEEEcCEEEEecCh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKN-KVIITT-EDGSVYHANYVIVTVSV 107 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v~V~~-~~G~~~~ad~VI~a~P~ 107 (307)
-.|+.+|++++.+ +|.+..+.-+..+.. .|+|.+ .+++-++.+.||+.+.-
T Consensus 27 i~lAh~L~~~l~~----------~R~~~~~~~l~PD~KsQVtveY~~~~~P~ri~tivvS~QH 79 (120)
T PF02772_consen 27 IVLAHRLARRLAE----------VRKNGELPWLRPDGKSQVTVEYDENGKPVRIDTIVVSTQH 79 (120)
T ss_dssp HHHHHHHHHHHHH----------HHHTSSSTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHH----------HHhcccCcccCCCcceeEEEeeccCCceeeeeEEEEEecC
Confidence 4677788887753 666666665665543 478888 57766778888887765
No 405
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=21.45 E-value=90 Score=29.30 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.9
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||.+||-... +.....|+..|+.||..++.
T Consensus 293 ~~ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 MQTNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred eecCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 34456899999998753 45677899999999998763
No 406
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=21.39 E-value=1.3e+02 Score=26.34 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=27.9
Q ss_pred CcEEEecccccCC--CCc-chhHHHHHHHHHHHHHHHHHh
Q 021822 263 GRIYFAGEHTNST--YLG-YVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 263 ~~l~~aGd~~~~~--~~g-~~egAv~SG~~aA~~il~~l~ 299 (307)
+++.++||+.+.- +.| .++-|++.|...|..|.+.+.
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~ 330 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALK 330 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhc
Confidence 6899999997753 233 689999999999988776654
No 407
>PLN02546 glutathione reductase
Probab=21.38 E-value=91 Score=30.30 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=29.5
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHH
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIK 296 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~ 296 (307)
+++..++||-+||-... ......|+..|+.+|+.|+.
T Consensus 376 l~Ts~p~IYAaGDv~~~--~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 376 SRTSVPSIWAVGDVTDR--INLTPVALMEGGALAKTLFG 412 (558)
T ss_pred ceeCCCCEEEeeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 44556899999998764 45678899999999998864
No 408
>PRK07121 hypothetical protein; Validated
Probab=21.34 E-value=1.2e+02 Score=28.83 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=28.1
Q ss_pred hCCCCcEEEecccccCC----C--CcchhHHHHHHHHHHHHHHHH
Q 021822 259 QQPFGRIYFAGEHTNST----Y--LGYVDGAYFSGINTANALIKC 297 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~----~--~g~~egAv~SG~~aA~~il~~ 297 (307)
-+|+++||-||+....- | ...+-.|+.+|+.|++.+.+.
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 35789999999874321 1 125677999999999988653
No 409
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=20.75 E-value=94 Score=32.41 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCeeecCCeeEEEEecCCeEEEEeCCCcEEEcCEEEEecChh
Q 021822 47 ETVVHYIANQFLSHNNNKITDPRLKLKKTVRKINQSKNKVIITTEDGSVYHANYVIVTVSVG 108 (307)
Q Consensus 47 ~~l~~~L~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~P~~ 108 (307)
..++++..+.+.+ +|.++++|+.|-+ .+++.+.....+|+||+++...
T Consensus 356 ~~vi~~~i~~l~~------~Gv~f~~n~~vG~--------dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 356 NQLIDDVVEKIKL------LGGRFVKNFVVGK--------TATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred HHHHHHHHHHHHh------hcCeEEEeEEecc--------EEeHHHhccccCCEEEEeCCCC
Confidence 4566666667765 5889998876532 2444444345689999999774
No 410
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=20.62 E-value=1.1e+02 Score=28.92 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.5
Q ss_pred hCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 259 QQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 259 ~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
.....+||-|||-.-. .+.+..|-..|..+|+.|+.++.
T Consensus 446 ~t~i~gLy~aGdGAG~--argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 446 STSIKGLYPAGDGAGL--ARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eeeecceEEccccccc--cchhHHHhhhhHHHHHHHHHHhc
Confidence 3445899999997653 56688999999999999998765
No 411
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.57 E-value=2.7e+02 Score=26.40 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=27.0
Q ss_pred eecCCeeEEEEec--CCeEEEEeCCCcEEEcCEEEEecCh
Q 021822 70 LKLKKTVRKINQS--KNKVIITTEDGSVYHANYVIVTVSV 107 (307)
Q Consensus 70 i~l~~~V~~I~~~--~~~v~V~~~~G~~~~ad~VI~a~P~ 107 (307)
.+...+++.+... ..++.+...+|....||.+|+++--
T Consensus 123 ~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh 162 (474)
T COG4529 123 RTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGH 162 (474)
T ss_pred eEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccC
Confidence 3445666666665 4457888889988899988888743
No 412
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=20.54 E-value=1.6e+02 Score=29.05 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=30.5
Q ss_pred hhCCCCcEEEecccccCCCCcchhHHHHHHHHHHHHHHHHHh
Q 021822 258 LQQPFGRIYFAGEHTNSTYLGYVDGAYFSGINTANALIKCLK 299 (307)
Q Consensus 258 ~~~p~~~l~~aGd~~~~~~~g~~egAv~SG~~aA~~il~~l~ 299 (307)
.++..++||-|||-...+.++...+++..|+.|+..+.+.+.
T Consensus 391 ~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~ 432 (608)
T PRK06854 391 RMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYIL 432 (608)
T ss_pred cccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999986543345566788888888888776554
No 413
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=20.13 E-value=3.3e+02 Score=25.71 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=27.9
Q ss_pred CCCeeecCCeeEEEEecC-CeEE-EEe---------CC---------C--cEEEcCEEEEecCh
Q 021822 66 TDPRLKLKKTVRKINQSK-NKVI-ITT---------ED---------G--SVYHANYVIVTVSV 107 (307)
Q Consensus 66 ~g~~i~l~~~V~~I~~~~-~~v~-V~~---------~~---------G--~~~~ad~VI~a~P~ 107 (307)
-|.++++++.+.+|..++ +++. |++ .+ | .++.+|.||+++..
T Consensus 333 ~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 333 EGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred cCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 378899999999997643 3331 221 11 2 25799999998864
Done!