BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021823
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana
GN=ORTH2 PE=1 SV=1
Length = 645
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 201 SYVGSPPKSEGRTIYYHMADETGEVDDDSLQGFAMTFKGNGVD 243
S + SPPK+ T+ +H D +GE+D + G A F+ G D
Sbjct: 40 SCLSSPPKTLASTLQWHCPDCSGEIDPLPVSGGATGFESAGSD 82
>sp|Q9CP05|PEPT_PASMU Peptidase T OS=Pasteurella multocida (strain Pm70) GN=pepT PE=3
SV=1
Length = 412
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 205 SPPKSEGRTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRS 264
+P ++EG+ +YH++ TG V+ LQ F +G ++ ++ IQ +V R
Sbjct: 256 TPEQTEGKQGFYHLSHFTGHVEKVELQYLIRDFDRDGFEQ------RKIFIQQLV--DRF 307
Query: 265 PLNGKL-YPLRLQLPPNNSDMHVIV--VPQSSKVAREFLKE 302
+L P+ L++ + +M+ +V VPQS ++A ++E
Sbjct: 308 NQQKRLKKPITLEIKDSYKNMNEVVKTVPQSVELADSAMRE 348
>sp|Q9VWA8|FRG1_DROME Protein FRG1 homolog OS=Drosophila melanogaster GN=CG6480 PE=1 SV=1
Length = 262
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 46 SVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKL 105
+ P + + KS YGKYL + G + ++V G +WEPV E ++ L
Sbjct: 103 AFPINDRKVAFKSGYGKYLKIEKDGMVTGRS-----EAVGG----MEQWEPVFEEQRMAL 153
Query: 106 KTRYGHFL 113
+ GHF+
Sbjct: 154 LSETGHFM 161
>sp|Q2H5T8|EIF3D_CHAGB Eukaryotic translation initiation factor 3 subunit D OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=CHGG_05977 PE=3 SV=1
Length = 584
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 20 LIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRK 79
L+++ T+ +N S K A+WTV+S+ ++++L A+++ +LG G
Sbjct: 453 LVSQRGAVVATEMKNNSCKLARWTVQSILAKADVMKLGFVSRVTPKANDKHVILGCVG-- 510
Query: 80 VIQSVPGRLDSSVEWEPVREANQVKLKTRYG 110
W+P ANQ+ L+ G
Sbjct: 511 --------------WKPKDFANQMNLQLSNG 527
>sp|A4RFH6|EIF3D_MAGO7 Eukaryotic translation initiation factor 3 subunit D OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=MGG_00341 PE=3 SV=1
Length = 573
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 20 LIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRK 79
L+++ T+ +N S K AKWTV+S+ ++++L ++++ +LG+ G
Sbjct: 442 LVSQRGAVVATEMKNNSCKLAKWTVQSILAKADVLKLGFVSRANPKSNDKHVILGVIG-- 499
Query: 80 VIQSVPGRLDSSVEWEPVREANQVKLKTRYG 110
W+P ANQ+ L G
Sbjct: 500 --------------WKPKDFANQMNLHLSNG 516
>sp|P19247|VVHA_VIBVU Cytolysin OS=Vibrio vulnificus (strain CMCP6) GN=vvhA PE=3 SV=2
Length = 471
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 11 RLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQP 70
R R D+ L D+ ++T ++ G++ + KW E G + I R Y+ +N
Sbjct: 390 RSRVASDRCLTVNADK-TLTVEQCGANLAQKWYWE---GDKLISR-------YVDGNNTR 438
Query: 71 FLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKL 105
+LL + G + +Q P + W+P + QVKL
Sbjct: 439 YLLNIVGGRNVQVTPENEANQARWKPTLQ--QVKL 471
>sp|A3QJT0|MNME_SHELP tRNA modification GTPase MnmE OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=mnmE PE=3 SV=1
Length = 453
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 202 YVGSPPKSEGRTIYYHMADETGE-VDDDSLQG---FAMTFK-GNGVDELTQKLREELGIQ 256
++ PK+ G T+ + AD TGE +D QG F ++ K G+GVDEL L+ +G Q
Sbjct: 319 FIDRLPKNLGVTVVRNKADLTGESLDATDEQGHKVFRLSAKTGSGVDELKAHLKSLMGYQ 378
>sp|P44246|MNMC_HAEIN tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=mnmC PE=3 SV=2
Length = 670
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 44 VESVPGSQNIIRLKS--CYGKYLTASNQ 69
V +P S+N+++LKS CY YLT +NQ
Sbjct: 485 VSQIPTSENLLKLKSVLCYDGYLTPANQ 512
>sp|Q4QKP6|MNMC_HAEI8 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain 86-028NP)
GN=mnmC PE=3 SV=1
Length = 670
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 44 VESVPGSQNIIRLKS--CYGKYLTASNQ 69
V +P S+N+++LKS CY YLT +NQ
Sbjct: 485 VSQIPTSENLLKLKSVLCYDGYLTPANQ 512
>sp|Q7S2I2|EIF3D_NEUCR Eukaryotic translation initiation factor 3 subunit D OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=NCU07380 PE=3 SV=1
Length = 591
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 29 VTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRL 88
T+ +N S K A+WTV+S+ ++++L +++ +LG+ G
Sbjct: 465 ATEMKNNSCKLARWTVQSILAKADVMKLGFVSRVNPKVNDKHVILGVVG----------- 513
Query: 89 DSSVEWEPVREANQVKLKTRYG 110
W+P ANQ+ L+ G
Sbjct: 514 -----WKPKDFANQMNLQLSNG 530
>sp|A5UEH1|MNMC_HAEIG tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain PittGG)
GN=mnmC PE=3 SV=1
Length = 670
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 44 VESVPGSQNIIRLKS--CYGKYLTASNQ 69
V +P S+N+++LKS CY YLT +NQ
Sbjct: 485 VSQIPTSENLLKLKSVLCYDGYLTPANQ 512
>sp|A5UCC9|MNMC_HAEIE tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain PittEE)
GN=mnmC PE=3 SV=1
Length = 670
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 44 VESVPGSQNIIRLKS--CYGKYLTASNQ 69
V +P S+N+++LKS CY YLT +NQ
Sbjct: 485 VSQIPTSENLLKLKSVLCYDGYLTPANQ 512
>sp|O84874|GLGB_CHLTR 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=glgB PE=3 SV=1
Length = 738
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 84 VPG-RLDSSVEWEPVREANQVKLKTR-YGHFLRANGGLPPWRNSVTHDIPHRTATQDWI 140
VPG + +WE V E+ QV +K+ YG F G PPW SV D + +W+
Sbjct: 174 VPGLTAGACYKWEMVTESGQVLIKSDPYGKFF----GPPPWSVSVVIDDSYEWTDSEWL 228
>sp|P95928|APE2_SULSO Leucyl aminopeptidase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=ape2 PE=1 SV=1
Length = 785
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 223 GEVDDDSLQG----FAMTFKGNGVDELTQKLREE 252
G +D D+ QG +A+T++ N VDEL ++ R+E
Sbjct: 626 GSLDSDTRQGVAVAYAITYEDNSVDELLERFRKE 659
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,759,246
Number of Sequences: 539616
Number of extensions: 5406713
Number of successful extensions: 19748
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 19406
Number of HSP's gapped (non-prelim): 404
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)