Query 021823
Match_columns 307
No_of_seqs 135 out of 157
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04601 DUF569: Protein of un 100.0 6.2E-63 1.3E-67 423.7 15.9 142 1-142 1-142 (142)
2 cd00257 Fascin Fascin-like dom 99.0 3E-09 6.5E-14 87.1 11.1 97 9-117 3-100 (119)
3 PF06268 Fascin: Fascin domain 98.2 1.8E-06 3.8E-11 70.7 4.3 57 6-66 34-90 (111)
4 cd00257 Fascin Fascin-like dom 98.0 1.8E-05 3.9E-10 64.7 7.1 58 7-68 43-100 (119)
5 PF04601 DUF569: Protein of un 97.8 5.2E-05 1.1E-09 65.9 7.1 64 7-73 51-122 (142)
6 PF06268 Fascin: Fascin domain 97.4 0.00068 1.5E-08 55.4 7.4 90 17-116 2-91 (111)
7 PF06229 FRG1: FRG1-like famil 96.9 0.002 4.3E-08 58.6 6.1 62 6-70 37-98 (191)
8 PF06229 FRG1: FRG1-like famil 96.6 0.0095 2.1E-07 54.1 8.1 90 18-117 2-96 (191)
9 PF00167 FGF: Fibroblast growt 95.0 0.078 1.7E-06 44.0 6.4 59 9-70 2-61 (122)
10 KOG3962 Predicted actin-bundli 94.4 0.078 1.7E-06 49.6 5.4 96 9-117 49-150 (246)
11 cd00058 FGF Acidic and basic f 92.1 0.33 7.2E-06 40.9 5.4 57 11-70 2-59 (123)
12 PF14200 RicinB_lectin_2: Rici 91.7 0.95 2.1E-05 35.9 7.4 76 39-118 2-80 (105)
13 smart00791 Agglutinin Amaranth 91.6 2 4.4E-05 37.4 9.7 97 9-114 7-110 (139)
14 smart00442 FGF Acidic and basi 91.5 0.55 1.2E-05 39.7 6.1 61 7-70 2-63 (126)
15 smart00472 MIR Domain in ryano 89.9 0.87 1.9E-05 32.4 5.1 42 5-46 5-56 (57)
16 PF00167 FGF: Fibroblast growt 88.7 1.4 2.9E-05 36.5 6.1 59 8-70 42-104 (122)
17 smart00472 MIR Domain in ryano 87.0 1.7 3.6E-05 30.9 4.9 48 96-146 3-56 (57)
18 PF05270 AbfB: Alpha-L-arabino 86.2 1.9 4E-05 37.6 5.7 99 9-118 2-118 (142)
19 cd00058 FGF Acidic and basic f 83.0 6.4 0.00014 33.1 7.5 61 6-70 38-102 (123)
20 PF14200 RicinB_lectin_2: Rici 80.9 8.1 0.00018 30.5 7.0 74 7-85 14-93 (105)
21 smart00791 Agglutinin Amaranth 80.2 7.2 0.00016 34.1 6.8 81 53-145 7-92 (139)
22 PF07468 Agglutinin: Agglutini 79.9 18 0.0004 32.1 9.4 118 9-130 7-138 (153)
23 COG1928 PMT1 Dolichyl-phosphat 79.0 6.5 0.00014 42.4 7.5 81 1-81 360-463 (699)
24 smart00442 FGF Acidic and basi 71.6 12 0.00025 31.7 5.9 58 8-69 44-105 (126)
25 KOG3359 Dolichyl-phosphate-man 71.2 1.3E+02 0.0027 33.0 14.6 137 8-148 318-500 (723)
26 KOG3359 Dolichyl-phosphate-man 70.8 14 0.00031 40.0 7.5 95 1-96 378-496 (723)
27 COG1928 PMT1 Dolichyl-phosphat 61.7 36 0.00078 36.9 8.3 94 52-150 306-419 (699)
28 KOG3533 Inositol 1,4,5-trispho 54.3 15 0.00033 42.7 4.2 67 4-70 241-327 (2706)
29 cd00161 RICIN Ricin-type beta- 46.2 1.3E+02 0.0028 22.8 11.4 96 11-118 2-102 (124)
30 cd06406 PB1_P67 A PB1 domain i 45.8 32 0.00069 27.4 3.8 35 239-273 20-56 (80)
31 cd06411 PB1_p51 The PB1 domain 43.9 59 0.0013 25.8 5.0 35 239-273 16-53 (78)
32 PF05270 AbfB: Alpha-L-arabino 41.8 36 0.00079 29.6 3.9 63 5-69 48-118 (142)
33 PF02815 MIR: MIR domain; Int 38.8 27 0.00058 30.8 2.7 87 37-123 45-163 (190)
34 cd01789 Alp11_N Ubiquitin-like 37.8 1.3E+02 0.0028 23.3 6.2 36 238-273 21-58 (84)
35 COG4118 Phd Antitoxin of toxin 34.8 35 0.00076 27.2 2.5 35 240-274 5-43 (84)
36 PF08709 Ins145_P3_rec: Inosit 31.3 90 0.002 28.5 4.9 62 6-67 100-180 (214)
37 PF10609 ParA: ParA/MinD ATPas 26.1 52 0.0011 26.1 2.1 25 273-297 4-39 (81)
38 KOG3041 Nucleoside diphosphate 25.0 91 0.002 29.2 3.7 39 246-292 123-162 (225)
39 PF02639 DUF188: Uncharacteriz 24.2 1.4E+02 0.0031 25.5 4.6 43 247-300 3-45 (130)
40 cd01667 TGS_ThrRS_N TGS _ThrRS 24.1 1.5E+02 0.0032 19.8 3.9 45 238-287 15-59 (61)
41 PF08783 DWNN: DWNN domain; I 23.2 1.8E+02 0.004 22.6 4.6 40 233-272 12-56 (74)
42 PF02563 Poly_export: Polysacc 22.7 65 0.0014 24.7 2.0 35 218-254 34-68 (82)
43 KOG3885 Fibroblast growth fact 22.3 2.5E+02 0.0054 25.0 5.8 58 14-74 32-91 (155)
44 cd01615 CIDE_N CIDE_N domain, 21.9 1.1E+02 0.0024 24.2 3.2 29 235-263 16-46 (78)
45 KOG1924 RhoA GTPase effector D 20.5 1.9E+02 0.0041 32.4 5.5 6 244-249 661-666 (1102)
No 1
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=100.00 E-value=6.2e-63 Score=423.66 Aligned_cols=142 Identities=67% Similarity=1.163 Sum_probs=139.3
Q ss_pred CCCCCCCcEEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceE
Q 021823 1 MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKV 80 (307)
Q Consensus 1 ME~F~d~~~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v 80 (307)
||+|+|++||||||++||||||||||++|+|+++|+|+||+|+||+++++.++|||||||||||+||+.+|++||+|++|
T Consensus 1 Me~F~d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v 80 (142)
T PF04601_consen 1 MEFFPDGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRV 80 (142)
T ss_pred CCccCCCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred EeeCCCCCCCCcceeEEeeCCEEEEecCCcceeccCCCCCCCCcceEeeCCCCCCccceEee
Q 021823 81 IQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILW 142 (307)
Q Consensus 81 ~Q~~~~~~d~~v~W~~v~~g~~V~Lr~~~gr~LRANg~~~pwr~~VTvD~~~~~~~~~~~~W 142 (307)
+|++++.+|+++|||||++|++|+||+++||||||||+++||||+||||++++++|++||+|
T Consensus 81 ~Q~~~~~~d~~~~Wepvr~g~~V~Lr~~~gr~LRANG~~~~Wrn~VT~D~~~~s~~~~wv~w 142 (142)
T PF04601_consen 81 VQTDPDRLDSSVEWEPVRDGFYVKLRHRSGRYLRANGGYPPWRNSVTVDVPHRSATQDWVLW 142 (142)
T ss_pred EecCCccCCCCceEEEecCCCEEEEEecCCceEEcCCCCCCCcceEEecCCCCCeEEEEEEC
Confidence 99999889999999999999999999999999999999999999999999999999999998
No 2
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.03 E-value=3e-09 Score=87.06 Aligned_cols=97 Identities=24% Similarity=0.348 Sum_probs=71.2
Q ss_pred EEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceEEeeCCCCC
Q 021823 9 AVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRL 88 (307)
Q Consensus 9 ~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v~Q~~~~~~ 88 (307)
.|+|||++||||.|++||..|..++........|.++.. ++..|.||+++||||++.+.. . ++...+ .
T Consensus 3 ~v~Lrs~~gkyl~~~~~g~~v~a~~~~~~~~e~F~l~~~--~~g~v~Lrs~~G~yls~~~~g-------~--l~~~~~-~ 70 (119)
T cd00257 3 QVVLRSVNGRYLSAEAGGDKVDANRDSLKGDETFTLEFD--NTGKYALRSHDGKYLSADSDG-------G--VQLEGH-P 70 (119)
T ss_pred EEEEEEcCCCEEEEeccCCEEEEcCccCCCceEEEEEEC--CCCeEEEEECCCcEEEEECCC-------C--EEecCC-C
Confidence 489999999999999999778888776666789999974 357889999999999986533 1 111222 2
Q ss_pred CCCcceeEEeeC-CEEEEecCCcceeccCC
Q 021823 89 DSSVEWEPVREA-NQVKLKTRYGHFLRANG 117 (307)
Q Consensus 89 d~~v~W~~v~~g-~~V~Lr~~~gr~LRANg 117 (307)
...-.|.....+ +.|.||..+|+||.++.
T Consensus 71 ~~~e~F~~e~~~~g~~al~~~~G~yl~~~~ 100 (119)
T cd00257 71 NADCRFTLEFHGDGKWALRAENGRYLGGDG 100 (119)
T ss_pred CCCcEEEEEECCCCeEEEEcCCCCEEeecC
Confidence 233335444433 58899999999999974
No 3
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.18 E-value=1.8e-06 Score=70.66 Aligned_cols=57 Identities=30% Similarity=0.464 Sum_probs=48.8
Q ss_pred CCcEEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCcccc
Q 021823 6 NAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTA 66 (307)
Q Consensus 6 d~~~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~a 66 (307)
+...|.||++.||||.+|.||. |..+.+....++.|.++.. +..+.|+.++||||++
T Consensus 34 ~~~~v~lrs~~GkYls~~~~G~-v~~~~~~~~~~~~F~i~~~---~~~~~~~~~nGkYl~~ 90 (111)
T PF06268_consen 34 GSYKVALRSHNGKYLSVDSDGS-VVADSETPGPDEFFEIEWH---GGKVALRASNGKYLSA 90 (111)
T ss_dssp TEEEEEEECTTSEEEEEETTSE-EEEEESSSSGGGCBEEEEE---TTEEEEECTTSCEEEE
T ss_pred CCCEEEEEcCCCCEEEEcCCCe-EEecCCCCCCCcEEEEEEC---CCEEEEECCCCCEEee
Confidence 4567789999999999999996 7766666678899999984 6899999999999995
No 4
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=98.01 E-value=1.8e-05 Score=64.65 Aligned_cols=58 Identities=26% Similarity=0.413 Sum_probs=48.7
Q ss_pred CcEEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCccccCC
Q 021823 7 AKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASN 68 (307)
Q Consensus 7 ~~~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~ 68 (307)
...|.||++.|+||.+++||. |+.+.. ......|.+|.. +++.+.||+.+|+||++..
T Consensus 43 ~g~v~Lrs~~G~yls~~~~g~-l~~~~~-~~~~e~F~~e~~--~~g~~al~~~~G~yl~~~~ 100 (119)
T cd00257 43 TGKYALRSHDGKYLSADSDGG-VQLEGH-PNADCRFTLEFH--GDGKWALRAENGRYLGGDG 100 (119)
T ss_pred CCeEEEEECCCcEEEEECCCC-EEecCC-CCCCcEEEEEEC--CCCeEEEEcCCCCEEeecC
Confidence 556899999999999999994 888777 667889999974 4467888999999999854
No 5
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=97.83 E-value=5.2e-05 Score=65.89 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=48.1
Q ss_pred CcEEEEeecCCceEeeecCC-------CeEEecC-CCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCCCCC
Q 021823 7 AKAVRLRSHHDKFLIAEEDE-------ESVTQDR-NGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLL 73 (307)
Q Consensus 7 ~~~VRLRs~~g~YL~ADeDg-------~~Vs~~~-~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~ 73 (307)
..+|||||.+|+||.|-+.. ..|.|.. ...-....|.... ++.+|+||+.|||||-|.....++
T Consensus 51 ~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q~~~~~~d~~~~Wepvr---~g~~V~Lr~~~gr~LRANG~~~~W 122 (142)
T PF04601_consen 51 PNYVRLRSAYGRYLAASDEPALLGHTGRRVVQTDPDRLDSSVEWEPVR---DGFYVKLRHRSGRYLRANGGYPPW 122 (142)
T ss_pred CCEEEEeeccCceEeccCCcCCCCCCCCEEEecCCccCCCCceEEEec---CCCEEEEEecCCceEEcCCCCCCC
Confidence 68999999999999998763 5677763 3333456886543 568999999999999986654333
No 6
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=97.39 E-value=0.00068 Score=55.37 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=65.4
Q ss_pred CceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceEEeeCCCCCCCCcceeE
Q 021823 17 DKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEP 96 (307)
Q Consensus 17 g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v~Q~~~~~~d~~v~W~~ 96 (307)
++|+.+..-+..|...+...+....|+++... +...|.||++.|+||.+..+. .-+. ..+..+....|+-
T Consensus 2 ~~~~~~~k~~~~l~an~~~~~~~e~f~le~~~-~~~~v~lrs~~GkYls~~~~G-------~v~~--~~~~~~~~~~F~i 71 (111)
T PF06268_consen 2 NGYLVSEKFGAHLNANRASLSDWETFQLEFDD-GSYKVALRSHNGKYLSVDSDG-------SVVA--DSETPGPDEFFEI 71 (111)
T ss_dssp TEEEEETTCTCBEEEEESSSSCGGSEEEEEET-TEEEEEEECTTSEEEEEETTS-------EEEE--EESSSSGGGCBEE
T ss_pred CcEEEEEEcCCEEECChhcCcccEEEEEEEEC-CCCEEEEEcCCCCEEEEcCCC-------eEEe--cCCCCCCCcEEEE
Confidence 57888888888888887666778899999642 346778999999999975443 2222 2222344555665
Q ss_pred EeeCCEEEEecCCcceeccC
Q 021823 97 VREANQVKLKTRYGHFLRAN 116 (307)
Q Consensus 97 v~~g~~V~Lr~~~gr~LRAN 116 (307)
...|+.+.|+..+|+||.+.
T Consensus 72 ~~~~~~~~~~~~nGkYl~~~ 91 (111)
T PF06268_consen 72 EWHGGKVALRASNGKYLSAG 91 (111)
T ss_dssp EEETTEEEEECTTSCEEEEE
T ss_pred EECCCEEEEECCCCCEEeeC
Confidence 55588999999999999954
No 7
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=96.91 E-value=0.002 Score=58.58 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=40.2
Q ss_pred CCcEEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCC
Q 021823 6 NAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQP 70 (307)
Q Consensus 6 d~~~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~ 70 (307)
+-..|.|+|+|||||.+|.+|. |+-+...-+....|.+-. .++..-++..+|++||++.+..
T Consensus 37 ~~~~iafKs~~GkYLs~Dk~G~-v~a~sdAiGp~E~f~~V~--~~~~~a~~~~~~~~FLs~~~~~ 98 (191)
T PF06229_consen 37 GDEKIAFKSGHGKYLSCDKDGI-VSARSDAIGPQEQFEPVF--QDGKPALFSSSNNKFLSVDEEG 98 (191)
T ss_dssp SSS-EEEEETTS-BEEE-SSSB-EEE--SS--TTTBEEEE---STT--EEEE-TTS-BEEE-SSS
T ss_pred CCCceEeeccCccEEEEcCCCc-EEEEeecCCCceEEEEEE--CCCCeEEEecCCCeEEEEeccc
Confidence 3456899999999999999996 777777667888998843 5566777777999999987755
No 8
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=96.60 E-value=0.0095 Score=54.15 Aligned_cols=90 Identities=21% Similarity=0.360 Sum_probs=47.0
Q ss_pred ceEeeecCCCeEEecC----CCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceEEeeCCCCCCCCcc
Q 021823 18 KFLIAEEDEESVTQDR----NGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVE 93 (307)
Q Consensus 18 ~YL~ADeDg~~Vs~~~----~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v~Q~~~~~~d~~v~ 93 (307)
+||.|=+||.-..=.+ .+.+..-+|+.-.++ +..-|.|||+|||||++.... .-+.+++. .-.-=.
T Consensus 2 syi~a~d~G~~t~~ePhd~~~~p~p~qV~va~~v~-~~~~iafKs~~GkYLs~Dk~G-------~v~a~sdA--iGp~E~ 71 (191)
T PF06229_consen 2 SYIEALDNGLFTTGEPHDVGEGPDPRQVWVATRVP-GDEKIAFKSGHGKYLSCDKDG-------IVSARSDA--IGPQEQ 71 (191)
T ss_dssp -BEEE-TTS-EEE----SSS----TTT-EEEEE---SSS-EEEEETTS-BEEE-SSS-------BEEE--SS----TTTB
T ss_pred ceeeeeccCCccccCCCcCCCCCChhHeEEEEEec-CCCceEeeccCccEEEEcCCC-------cEEEEeec--CCCceE
Confidence 6999999997444223 344678899999886 557899999999999976432 33333221 112335
Q ss_pred eeEEeeCC-EEEEecCCcceeccCC
Q 021823 94 WEPVREAN-QVKLKTRYGHFLRANG 117 (307)
Q Consensus 94 W~~v~~g~-~V~Lr~~~gr~LRANg 117 (307)
|++|...+ ..++...+++||-.+.
T Consensus 72 f~~V~~~~~~a~~~~~~~~FLs~~~ 96 (191)
T PF06229_consen 72 FEPVFQDGKPALFSSSNNKFLSVDE 96 (191)
T ss_dssp EEEE-STT--EEEE-TTS-BEEE-S
T ss_pred EEEEECCCCeEEEecCCCeEEEEec
Confidence 99998644 5555547889998875
No 9
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=94.96 E-value=0.078 Score=43.98 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=49.7
Q ss_pred EEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cCCCccccCCCC
Q 021823 9 AVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CYGKYLTASNQP 70 (307)
Q Consensus 9 ~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AYGRYL~as~~~ 70 (307)
.++|=++.|+||.-.+||. |.-..+..+..++|.++.+.. ..|+|++ ..++||+..+..
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~-V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G 61 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGT-VDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCG 61 (122)
T ss_dssp EEEEEETTSEEEEEETTSB-EEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTS
T ss_pred CEEEEECCCeEEEECCCCe-EeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCC
Confidence 5788888899999999994 777777778999999999744 6999999 789999986554
No 10
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=94.35 E-value=0.078 Score=49.55 Aligned_cols=96 Identities=26% Similarity=0.397 Sum_probs=58.3
Q ss_pred EEEEeecCCceEeeecCCCeEEecCC----CCCC-CCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceEEee
Q 021823 9 AVRLRSHHDKFLIAEEDEESVTQDRN----GSSK-SAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQS 83 (307)
Q Consensus 9 ~VRLRs~~g~YL~ADeDg~~Vs~~~~----~~s~-na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v~Q~ 83 (307)
+|-.----++||+|-++|..--.-++ +... .-.-+|-+ .+..|.|+|+||+||..+.+.-.-|
T Consensus 49 ~v~ie~~~~~yl~a~dng~ft~g~ph~~~~gp~p~e~f~avki---~dsrIaLKsGyGKYlsinsdglvvg--------- 116 (246)
T KOG3962|consen 49 TVAIEIDDGTYLGAMDNGLFTLGAPHDEVDGPEPEEQFMAVKI---SDSRIALKSGYGKYLSINSDGLVVG--------- 116 (246)
T ss_pred EEEEEecCceEEEEEecCceeeccCCccccCCCchhhEEEEEc---cCceEEecccccceeeecCCccEEE---------
Confidence 45554445899999999975444332 2222 33445554 4489999999999999866652222
Q ss_pred CCCCCCCCcceeEEeeC-CEEEEecCCcceeccCC
Q 021823 84 VPGRLDSSVEWEPVREA-NQVKLKTRYGHFLRANG 117 (307)
Q Consensus 84 ~~~~~d~~v~W~~v~~g-~~V~Lr~~~gr~LRANg 117 (307)
..++..+-=.|+|+..+ ...+|.. .|.|.+-|.
T Consensus 117 ~qeAvG~~EQw~~vFq~~r~a~~as-~s~~~~~~e 150 (246)
T KOG3962|consen 117 RQEAVGSREQWEPVFQEGRMALLAS-NSCFIRCNE 150 (246)
T ss_pred ehhhcCcHhhchhhhhccceEEeec-cceeEEech
Confidence 11234455569998764 4555543 455544443
No 11
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=92.15 E-value=0.33 Score=40.94 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=46.2
Q ss_pred EEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cCCCccccCCCC
Q 021823 11 RLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CYGKYLTASNQP 70 (307)
Q Consensus 11 RLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AYGRYL~as~~~ 70 (307)
+|=++.+.||.-+.||. |.=.++..+..++|.++.+ +...|+++| +.++||+-....
T Consensus 2 qLy~~~~~~L~I~~dG~-V~Gt~~~~~~~s~l~~~s~--~~g~v~i~~v~s~~YLCmn~~G 59 (123)
T cd00058 2 QLYCRTGFHLQILPDGT-VDGTRDDSSSYTILERIAV--AVGVVSIKGVASCRYLCMNKCG 59 (123)
T ss_pred eEEEcCCeEEEEcCCCc-EecccCCCCCCceEEEEEC--CCCEEEEEEcccceEEEECCCC
Confidence 44455688999999996 7766777778999999985 468999999 799999987554
No 12
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=91.66 E-value=0.95 Score=35.94 Aligned_cols=76 Identities=21% Similarity=0.423 Sum_probs=54.6
Q ss_pred CCeeEEEeecCCCCEEEecc-cCCCccccCCCCCCCCCCcceEEeeCCCCCCCCcceeEEeeC-CEEEEecC-Ccceecc
Q 021823 39 SAKWTVESVPGSQNIIRLKS-CYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREA-NQVKLKTR-YGHFLRA 115 (307)
Q Consensus 39 na~W~Ve~~~~~~~~vlL~s-AYGRYL~as~~~~~~G~~G~~v~Q~~~~~~d~~v~W~~v~~g-~~V~Lr~~-~gr~LRA 115 (307)
|-.|.+..+...+.+..|++ +.|+||.+...... .|..|.|..... ..+-.|.....| +.+.|+.. +|.+|=.
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~---~g~~v~~~~~~~-~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv 77 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTA---NGTNVQQWTCNG-NDNQQWKIEPVGDGYYRIRNKNSGKVLDV 77 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCS---TTEBEEEEESSS-SGGGEEEEEESTTSEEEEEETSTTEEEEE
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcC---CCcEEEEecCCC-CcCcEEEEEEecCCeEEEEECCCCcEEEE
Confidence 56899999865667888888 78999998764422 356787765443 567889988875 46777766 4777755
Q ss_pred CCC
Q 021823 116 NGG 118 (307)
Q Consensus 116 Ng~ 118 (307)
.++
T Consensus 78 ~~~ 80 (105)
T PF14200_consen 78 AGG 80 (105)
T ss_dssp GGG
T ss_pred CCC
Confidence 443
No 13
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=91.64 E-value=2 Score=37.43 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=61.3
Q ss_pred EEEEeecCCceEeeecCCCeEEecCC---CCCCCCeeEEEeecCCCCEEEecccC-CCccccCCCCCCCCCCcceEEeeC
Q 021823 9 AVRLRSHHDKFLIAEEDEESVTQDRN---GSSKSAKWTVESVPGSQNIIRLKSCY-GKYLTASNQPFLLGMTGRKVIQSV 84 (307)
Q Consensus 9 ~VRLRs~~g~YL~ADeDg~~Vs~~~~---~~s~na~W~Ve~~~~~~~~vlL~sAY-GRYL~as~~~~~~G~~G~~v~Q~~ 84 (307)
+|-.||-.||||.+---+.-=.+.-. =...-+.-.|+. ..+..|.+|++| |+|-.+|+.- - -+.-.+
T Consensus 7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~--~~dg~V~ik~~~~nKfWr~s~~W-I------~a~s~d 77 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFP--TYNGLVHIKSNYTNKFWRLSHYW-I------TADAND 77 (139)
T ss_pred EEEEEcCCCceEEEEeecccceeEecccccCCcceeEEEEE--cCCCcEEEEecCCCceEccCCCE-E------EecCCC
Confidence 88889999999998752211122212 224557888887 345799999976 9998776221 1 111113
Q ss_pred C-CCCCCCcceeEEe-eCCEEEEecCC-cceec
Q 021823 85 P-GRLDSSVEWEPVR-EANQVKLKTRY-GHFLR 114 (307)
Q Consensus 85 ~-~~~d~~v~W~~v~-~g~~V~Lr~~~-gr~LR 114 (307)
+ +..++.-+.+||. +++.+.|+|.. |+|.+
T Consensus 78 ~~e~~sscTLF~Pv~~d~~~i~lr~vq~~~~~~ 110 (139)
T smart00791 78 PDENKSACTLFRPLYVEMKKIRLLNVQLGHYTK 110 (139)
T ss_pred CccCCCcccEEeEEeccCceEEEEEecCCceEE
Confidence 3 2234677888888 46788898873 56554
No 14
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=91.49 E-value=0.55 Score=39.74 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=48.7
Q ss_pred CcEEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cCCCccccCCCC
Q 021823 7 AKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CYGKYLTASNQP 70 (307)
Q Consensus 7 ~~~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AYGRYL~as~~~ 70 (307)
...++|=+++|.||.-+.||. |.=.++..+..++|.++-+ +...|+++| +.++||+.....
T Consensus 2 ~R~~~Ly~~~~~~L~I~~~G~-V~Gt~~~~~~~~ile~~s~--~~g~V~ik~~~s~~YLCmn~~G 63 (126)
T smart00442 2 KRLRQLYCRNGQHLQILPDGT-VDGTRDESSSFTILEIIAV--AVGVVAIKGVASCRYLCMNKCG 63 (126)
T ss_pred ceEEEEEeCCCeEEEEcCCce-EecccCCCCcceEEEEEec--cCCEEEEEEcccceEEEECCCC
Confidence 356777788889999999985 6666666678999998875 347899999 789999986655
No 15
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=89.92 E-value=0.87 Score=32.39 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=31.2
Q ss_pred CCCcEEEEeec-CCceEeeecCC--------CeEEecCCCC-CCCCeeEEEe
Q 021823 5 HNAKAVRLRSH-HDKFLIAEEDE--------ESVTQDRNGS-SKSAKWTVES 46 (307)
Q Consensus 5 ~d~~~VRLRs~-~g~YL~ADeDg--------~~Vs~~~~~~-s~na~W~Ve~ 46 (307)
..+..||||.- .|+||++.+.- .-|++..+.. ..+..|.|+.
T Consensus 5 ~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~~~W~ie~ 56 (57)
T smart00472 5 RWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDANTLWLIEP 56 (57)
T ss_pred ccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCCCcEEEEe
Confidence 46788999975 79999986655 2567655443 5788999986
No 16
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=88.69 E-value=1.4 Score=36.55 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=47.0
Q ss_pred cEEEEeec-CCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cC--CCccccCCCC
Q 021823 8 KAVRLRSH-HDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CY--GKYLTASNQP 70 (307)
Q Consensus 8 ~~VRLRs~-~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AY--GRYL~as~~~ 70 (307)
..|+||+. .++||+=|++|. |+-+..... +++|..+.. ++.|..+.| .| +.||+.....
T Consensus 42 g~V~i~~~~s~~YLcmn~~G~-ly~~~~~~~-~C~F~e~~~--~n~y~~~~s~~~~~~~yla~~~~G 104 (122)
T PF00167_consen 42 GVVRIRGVKSCRYLCMNKCGR-LYGSKNFNK-DCVFREELL--ENGYNTYESAKYGRGWYLAFNRRG 104 (122)
T ss_dssp TEEEEEETTTTEEEEEBTTSB-EEEESSBTG-GGEEEEEEE--TTSEEEEEESTTGTTEBCEBCTTS
T ss_pred eEEEEEEecceEEEEECCCCe-EccccccCC-CceEEEEEc--cCCEEEEEeccCCccEEEEECCCC
Confidence 48999996 799999999998 555555545 999998774 558999999 45 9999987664
No 17
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=86.98 E-value=1.7 Score=30.90 Aligned_cols=48 Identities=29% Similarity=0.493 Sum_probs=32.8
Q ss_pred EEeeCCEEEEecCC-cceeccCCCC-CCCC---cceEeeCCCC-CCccceEeeEEEE
Q 021823 96 PVREANQVKLKTRY-GHFLRANGGL-PPWR---NSVTHDIPHR-TATQDWILWDVDV 146 (307)
Q Consensus 96 ~v~~g~~V~Lr~~~-gr~LRANg~~-~pwr---~~VTvD~~~~-~~~~~~~~W~Ve~ 146 (307)
.|+.|+.|+|+|.. |+||...... ++|. .-||...... ... -+|.||.
T Consensus 3 ~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~---~~W~ie~ 56 (57)
T smart00472 3 FVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDAN---TLWLIEP 56 (57)
T ss_pred ccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCC---CcEEEEe
Confidence 35678999999985 9999998775 7776 3667643221 111 2599985
No 18
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=86.22 E-value=1.9 Score=37.62 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=57.3
Q ss_pred EEEEeec--CCceEeeecCCCeEEecCCCCCC------CCeeEEEeecCCCCEEEecccC--CCccccCCCCCCCCCCcc
Q 021823 9 AVRLRSH--HDKFLIAEEDEESVTQDRNGSSK------SAKWTVESVPGSQNIIRLKSCY--GKYLTASNQPFLLGMTGR 78 (307)
Q Consensus 9 ~VRLRs~--~g~YL~ADeDg~~Vs~~~~~~s~------na~W~Ve~~~~~~~~vlL~sAY--GRYL~as~~~~~~G~~G~ 78 (307)
.+||+|. -+.||..++ ..|.++...++. .+-|.|..-..+..+|-|+|+. |.||-..+.. .
T Consensus 2 ~~~~~s~~~~~ryirh~~--~~~~~~~v~~~s~~~~r~da~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~~-------v 72 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRG--SLVRLDPVSSSSSALDRADATFRVVPGLADSSCVSFESVNYPGYYLRHSNFR-------V 72 (142)
T ss_dssp EEEEEESSSTTEEEEEET--TEEEEEES-SSGGHHHHHGG-EEEEE-SS-TTCEEEEESSSTTEEEEEETTE-------E
T ss_pred eEEEECCCCCCeEEEEcC--ceEEEeeccCCcchhhccCceEEEEEccCCCCEEEEEECCCCCcEEEEECCE-------E
Confidence 4788885 689998864 345665543332 5899998755567899999954 9999763332 1
Q ss_pred eEEeeCCCC---CCCCcceeEEee---CCEEEEecCC--cceeccCCC
Q 021823 79 KVIQSVPGR---LDSSVEWEPVRE---ANQVKLKTRY--GHFLRANGG 118 (307)
Q Consensus 79 ~v~Q~~~~~---~d~~v~W~~v~~---g~~V~Lr~~~--gr~LRANg~ 118 (307)
+..+.+.+. .|.. |-+... .+.|.|+... |+|||-.+.
T Consensus 73 ~l~~~d~s~~F~~dAT--F~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~~ 118 (142)
T PF05270_consen 73 RLEKNDGSALFREDAT--FCPRPGLAGPGYVSFESYNYPGRYLRHYNG 118 (142)
T ss_dssp EEEE--SSHHHHHHT---EEEEE-SSSTTEEEEEESSSTTEEEEEETT
T ss_pred EEeecCCCccccCCce--EEEecCCCCCCcceEEEecCCCeEEEEECC
Confidence 111112111 1233 444332 3577887765 899987653
No 19
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=82.96 E-value=6.4 Score=33.14 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=48.5
Q ss_pred CCcEEEEeec-CCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cC--CCccccCCCC
Q 021823 6 NAKAVRLRSH-HDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CY--GKYLTASNQP 70 (307)
Q Consensus 6 d~~~VRLRs~-~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AY--GRYL~as~~~ 70 (307)
+...|++|+- .++||+-|++|. ++-+. ..+.++.|..+.. +..|-...| .| +-|||.....
T Consensus 38 ~~g~v~i~~v~s~~YLCmn~~G~-ly~s~-~~~~dC~F~E~~~--~n~Y~~y~S~~~~~~~ylal~~~G 102 (123)
T cd00058 38 AVGVVSIKGVASCRYLCMNKCGK-LYGSK-GFTEECLFREELL--ENNYNTYASAKYRRRWYLALNKKG 102 (123)
T ss_pred CCCEEEEEEcccceEEEECCCCC-EEECC-CCCCCCEEEEEEc--cCCcEEEEEcccCCCcEEEECCCC
Confidence 4568899996 899999999997 66555 5678999998873 457888889 55 7899986653
No 20
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=80.90 E-value=8.1 Score=30.53 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=53.1
Q ss_pred CcEEEEeec-CCceEeeecC----CCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cCCCccccCCCCCCCCCCcceE
Q 021823 7 AKAVRLRSH-HDKFLIAEED----EESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CYGKYLTASNQPFLLGMTGRKV 80 (307)
Q Consensus 7 ~~~VRLRs~-~g~YL~ADeD----g~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AYGRYL~as~~~~~~G~~G~~v 80 (307)
.....|+|. -|+||-++.+ |..|.+.......+..|.++.. ++.+..|++ ..|++|.+.+.... .|..|
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~--~~g~y~I~n~~s~~~Ldv~~~~~~---~g~~v 88 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPV--GDGYYRIRNKNSGKVLDVAGGSTA---NGTNV 88 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEES--TTSEEEEEETSTTEEEEEGGGSSS---TTEBE
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEe--cCCeEEEEECCCCcEEEECCCCCC---CCCEE
Confidence 567899996 7999998754 5678776554478889999985 345788888 66999998655322 45667
Q ss_pred EeeCC
Q 021823 81 IQSVP 85 (307)
Q Consensus 81 ~Q~~~ 85 (307)
.|-.+
T Consensus 89 ~~~~~ 93 (105)
T PF14200_consen 89 QQWEY 93 (105)
T ss_dssp EEEE-
T ss_pred EEEeC
Confidence 66543
No 21
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=80.19 E-value=7.2 Score=34.07 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=50.6
Q ss_pred EEEecccCCCccccCCCCCCCCCCcceEEeeCCCC-CCCCcceeEEee-CCEEEEecCC-cceeccCCCCCCCCcceEee
Q 021823 53 IIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGR-LDSSVEWEPVRE-ANQVKLKTRY-GHFLRANGGLPPWRNSVTHD 129 (307)
Q Consensus 53 ~vlL~sAYGRYL~as~~~~~~G~~G~~v~Q~~~~~-~d~~v~W~~v~~-g~~V~Lr~~~-gr~LRANg~~~pwr~~VTvD 129 (307)
||.+||-.|+||.+-... |..-.|...+. +|..+--+.... .+.|.+|+.+ |+|.|++ +-| ++.|
T Consensus 7 ~V~FKg~n~kYLry~~~~------~~~~lqf~~ddI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s---~~W---I~a~ 74 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQ------QYGLLQFSADKILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLS---HYW---ITAD 74 (139)
T ss_pred EEEEEcCCCceEEEEeec------ccceeEecccccCCcceeEEEEEcCCCcEEEEecCCCceEccC---CCE---EEec
Confidence 899999999999874422 34455654432 355555554433 4589999886 8999998 345 4443
Q ss_pred C--CCCCCccceEeeEEE
Q 021823 130 I--PHRTATQDWILWDVD 145 (307)
Q Consensus 130 ~--~~~~~~~~~~~W~Ve 145 (307)
. +..+.....+.|.|-
T Consensus 75 s~d~~e~~sscTLF~Pv~ 92 (139)
T smart00791 75 ANDPDENKSACTLFRPLY 92 (139)
T ss_pred CCCCccCCCcccEEeEEe
Confidence 2 212222456888776
No 22
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=79.94 E-value=18 Score=32.06 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=65.0
Q ss_pred EEEEeecCCceEeeecCCCe----EEec-CCCCCCCCeeEEEeecCCCCEEEecccC-CCccccCCCCCCCCCCcceEEe
Q 021823 9 AVRLRSHHDKFLIAEEDEES----VTQD-RNGSSKSAKWTVESVPGSQNIIRLKSCY-GKYLTASNQPFLLGMTGRKVIQ 82 (307)
Q Consensus 9 ~VRLRs~~g~YL~ADeDg~~----Vs~~-~~~~s~na~W~Ve~~~~~~~~vlL~sAY-GRYL~as~~~~~~G~~G~~v~Q 82 (307)
+|..+...||||.+--++.. +..+ -+-...-++-.|+.....+..|.+|++| |||-..+... +.---+.-
T Consensus 7 ~V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n----~~WI~ada 82 (153)
T PF07468_consen 7 YVAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPN----DYWIWADA 82 (153)
T ss_dssp CEEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC------BEEEEE
T ss_pred EEEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCC----CcEEEecC
Confidence 56666679999999753322 2222 2334567888888855556799999977 9999964221 00011111
Q ss_pred eCCC---CCCCCcceeEEeeC----CEEEEecCC-cceeccCCCCCCCCcceEeeC
Q 021823 83 SVPG---RLDSSVEWEPVREA----NQVKLKTRY-GHFLRANGGLPPWRNSVTHDI 130 (307)
Q Consensus 83 ~~~~---~~d~~v~W~~v~~g----~~V~Lr~~~-gr~LRANg~~~pwr~~VTvD~ 130 (307)
..++ .....-+.+||+-+ ..+.|++.. |+|.+-+---.+|.++.-.+.
T Consensus 83 ~~p~ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~sCL~A~~ 138 (153)
T PF07468_consen 83 DDPDEDQSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFVSCLNAAS 138 (153)
T ss_dssp SSHHH-TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEEE--STTBSSEEEEEE
T ss_pred CCcccccCCCCceEEEEEEecCCCccEEEEEecCCceEEEEEccCCcceeeEeecc
Confidence 1111 12456778898742 578888774 677655533335777765543
No 23
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=6.5 Score=42.37 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=57.7
Q ss_pred CCCCCCCcEEEEeec-CCceEeeecCCCeEEecC---------CCCCCCCeeEEEeecCC-----------CCEEEecc-
Q 021823 1 MEFFHNAKAVRLRSH-HDKFLIAEEDEESVTQDR---------NGSSKSAKWTVESVPGS-----------QNIIRLKS- 58 (307)
Q Consensus 1 ME~F~d~~~VRLRs~-~g~YL~ADeDg~~Vs~~~---------~~~s~na~W~Ve~~~~~-----------~~~vlL~s- 58 (307)
||.-.||+.||||=+ +||+||+-+--..||-+. ..+-.+--|.||++... ....||+.
T Consensus 360 ~~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl~h~ 439 (699)
T COG1928 360 IEPLKDGQSVRLRHKYTGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRLYHV 439 (699)
T ss_pred ceeccCCcEEEEEEeeccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceeeeec
Confidence 456789999999987 999999998665555441 22236779999998631 14567766
Q ss_pred cCCCccccCCCCCC-CCCCcceEE
Q 021823 59 CYGKYLTASNQPFL-LGMTGRKVI 81 (307)
Q Consensus 59 AYGRYL~as~~~~~-~G~~G~~v~ 81 (307)
--|.||+.++...+ +|.....|+
T Consensus 440 ~~~cyL~s~~~~lP~Wgf~q~EV~ 463 (699)
T COG1928 440 LTGCYLASHDLKLPEWGFSQREVL 463 (699)
T ss_pred ccceeeccCCCCCCCcccccceeE
Confidence 56999999888744 676655553
No 24
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=71.64 E-value=12 Score=31.70 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=44.5
Q ss_pred cEEEEeec-CCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cCC--CccccCCC
Q 021823 8 KAVRLRSH-HDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CYG--KYLTASNQ 69 (307)
Q Consensus 8 ~~VRLRs~-~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AYG--RYL~as~~ 69 (307)
..|++|+- .++||+-|++|. ++-... .+.+++|.-+.. +..|-...| .|. -|||....
T Consensus 44 g~V~ik~~~s~~YLCmn~~G~-ly~s~~-~~~dC~F~E~~~--~n~y~~y~S~~~~~~~ylal~~~ 105 (126)
T smart00442 44 GVVAIKGVASCRYLCMNKCGK-LYGSKN-FTEDCVFREEME--ENGYNTYASAKYRKRWYVALNKK 105 (126)
T ss_pred CEEEEEEcccceEEEECCCCC-EEEccc-CCCCcEEEEEec--cCCeEEEEEcccCCceEEEECCC
Confidence 57899996 899999999998 555554 568999987763 457888888 565 68887555
No 25
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.20 E-value=1.3e+02 Score=33.04 Aligned_cols=137 Identities=22% Similarity=0.387 Sum_probs=84.0
Q ss_pred cEEEEeec--CCceEeeecC----C---C-eEEecCCCCCCCCeeEEEe--ec------------CCCCEEEecc-cCCC
Q 021823 8 KAVRLRSH--HDKFLIAEED----E---E-SVTQDRNGSSKSAKWTVES--VP------------GSQNIIRLKS-CYGK 62 (307)
Q Consensus 8 ~~VRLRs~--~g~YL~ADeD----g---~-~Vs~~~~~~s~na~W~Ve~--~~------------~~~~~vlL~s-AYGR 62 (307)
--|.||++ -|.|||.... | . -|..= .-.-.|..|-+|+ .+ .+|+.|+|+= .=||
T Consensus 318 S~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y-~~~D~NN~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~T~r 396 (723)
T KOG3359|consen 318 STITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGY-PHKDANNEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKMTGR 396 (723)
T ss_pred cEEEEEecCCcceeeecccccCCCCcCccceEEee-cccCCCceEEEecCCCCcccccCCcceeccCCcEEEEEecccCc
Confidence 56789997 5689998753 2 1 12211 1123588999992 11 1347888866 8999
Q ss_pred ccccCCCCCCCCCCcceEEee-CCC-CCCCCcceeEE--ee-----C-------CEEEEecCC-cceeccCCC-CCCCC-
Q 021823 63 YLTASNQPFLLGMTGRKVIQS-VPG-RLDSSVEWEPV--RE-----A-------NQVKLKTRY-GHFLRANGG-LPPWR- 123 (307)
Q Consensus 63 YL~as~~~~~~G~~G~~v~Q~-~~~-~~d~~v~W~~v--~~-----g-------~~V~Lr~~~-gr~LRANg~-~~pwr- 123 (307)
+|.+.+.+++..-.-..|.=- +.+ ..|..=.|... .. + ..++|.|.. |.||-..|+ +|-|.
T Consensus 397 ~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fRl~h~~t~c~L~ss~~~LP~WGf 476 (723)
T KOG3359|consen 397 NLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFRLIHVLTGCYLKSSGKKLPEWGF 476 (723)
T ss_pred ccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEEEEEcccceEEccCCCcCCcccc
Confidence 999999988875443333311 222 33555667542 21 1 257787774 899988887 56687
Q ss_pred --cceEeeCCCCCCccceEeeEEEEee
Q 021823 124 --NSVTHDIPHRTATQDWILWDVDVVE 148 (307)
Q Consensus 124 --~~VTvD~~~~~~~~~~~~W~Ve~Vp 148 (307)
--|+.+...+ ..-..|-||-+.
T Consensus 477 ~Q~EV~c~~~~~---~~~T~WnVEe~~ 500 (723)
T KOG3359|consen 477 EQQEVVCAKNPR---DKSTTWNVEEHE 500 (723)
T ss_pred cceEEecccCCc---CCCceEEEeccc
Confidence 4566653311 122369999874
No 26
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.79 E-value=14 Score=39.98 Aligned_cols=95 Identities=24% Similarity=0.399 Sum_probs=63.3
Q ss_pred CCCCCCCcEEEEeec-CCceEeeecCCCeEEec-------CC-C--CCCCCeeEEEeecCC---C--------CEEEecc
Q 021823 1 MEFFHNAKAVRLRSH-HDKFLIAEEDEESVTQD-------RN-G--SSKSAKWTVESVPGS---Q--------NIIRLKS 58 (307)
Q Consensus 1 ME~F~d~~~VRLRs~-~g~YL~ADeDg~~Vs~~-------~~-~--~s~na~W~Ve~~~~~---~--------~~vlL~s 58 (307)
+|.-.+|..||||=- .|++||+-+--.-||.. .+ + .-.|..|+||++... + ..+||.-
T Consensus 378 ~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fRl~h 457 (723)
T KOG3359|consen 378 IEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFRLIH 457 (723)
T ss_pred ceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEEEEE
Confidence 355678999999965 79999999876655433 21 1 235789999998643 1 4567776
Q ss_pred -cCCCccccCCCCCC-CCCCcceEEeeCCCCCCCCcceeE
Q 021823 59 -CYGKYLTASNQPFL-LGMTGRKVIQSVPGRLDSSVEWEP 96 (307)
Q Consensus 59 -AYGRYL~as~~~~~-~G~~G~~v~Q~~~~~~d~~v~W~~ 96 (307)
--|.||..|+...| +|..-..|+ |.+.+.|.+.-|-.
T Consensus 458 ~~t~c~L~ss~~~LP~WGf~Q~EV~-c~~~~~~~~T~WnV 496 (723)
T KOG3359|consen 458 VLTGCYLKSSGKKLPEWGFEQQEVV-CAKNPRDKSTTWNV 496 (723)
T ss_pred cccceEEccCCCcCCcccccceEEe-cccCCcCCCceEEE
Confidence 56999999988754 676544553 23333345555643
No 27
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.71 E-value=36 Score=36.93 Aligned_cols=94 Identities=27% Similarity=0.472 Sum_probs=59.9
Q ss_pred CEEEecc--cCCCccccCCCCCCCCCCcceEEeeCCCCCCCCcce------------eEEeeCCEEEEecCC-cceeccC
Q 021823 52 NIIRLKS--CYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEW------------EPVREANQVKLKTRY-GHFLRAN 116 (307)
Q Consensus 52 ~~vlL~s--AYGRYL~as~~~~~~G~~G~~v~Q~~~~~~d~~v~W------------~~v~~g~~V~Lr~~~-gr~LRAN 116 (307)
..|-+|+ --|-||+......|.|--+..|+ .+.-.|.+-+| +++.+|..|+|+|.+ |++|.+-
T Consensus 306 S~itirh~~t~g~~LHSh~~~YP~gs~qqqvt--~y~~~d~NN~W~~e~~~~~~~~~~~l~~G~~vrL~H~~T~~~Lh~H 383 (699)
T COG1928 306 STITIRHAGTGGGYLHSHNQLYPEGSEQQQVT--GYGHKDANNEWLIELSDENATQIEPLKDGQSVRLRHKYTGKNLHFH 383 (699)
T ss_pred eEEEEeccCCccchhhcccCCCCCCcccceee--cccccccccceeeeecccccccceeccCCcEEEEEEeeccceeecC
Confidence 4555555 45788888888777765444443 22223555555 467789999999986 8999999
Q ss_pred CCCCCCCcc---eEe--eCCCCCCccceEeeEEEEeecc
Q 021823 117 GGLPPWRNS---VTH--DIPHRTATQDWILWDVDVVEIQ 150 (307)
Q Consensus 117 g~~~pwr~~---VTv--D~~~~~~~~~~~~W~Ve~Vp~~ 150 (307)
+..+|-... ||- |....... =.|.||.+.-+
T Consensus 384 ~~~~pvS~~~~EvS~yg~~~~gd~~---d~w~i~i~~~~ 419 (699)
T COG1928 384 DVKPPVSGNQYEVSGYGDSFEGDEK---DDWIIEIVKDE 419 (699)
T ss_pred CCCCCCCCCceeeeeccccccCCcc---cceeeEeeecc
Confidence 887775533 222 21112222 25999999765
No 28
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=54.32 E-value=15 Score=42.70 Aligned_cols=67 Identities=31% Similarity=0.491 Sum_probs=49.6
Q ss_pred CCCCcEEEEeec-CCceEeeecCCC--eEEecC-------CCCCCCCeeEEEeecCC----C-----CEEEecc-cCCCc
Q 021823 4 FHNAKAVRLRSH-HDKFLIAEEDEE--SVTQDR-------NGSSKSAKWTVESVPGS----Q-----NIIRLKS-CYGKY 63 (307)
Q Consensus 4 F~d~~~VRLRs~-~g~YL~ADeDg~--~Vs~~~-------~~~s~na~W~Ve~~~~~----~-----~~vlL~s-AYGRY 63 (307)
...|..|||--- ..|||..||-.+ -|.++. ...|.+|.|.||.|+++ | ...|++- |-|-|
T Consensus 241 lKgGDVVRLFHAeQekFLT~Dey~kq~hVFLRtT~RqSAtsATSSkALWEveVVqhd~cRGGag~WNslyRFKHLATg~Y 320 (2706)
T KOG3533|consen 241 LKGGDVVRLFHAEQEKFLTCDEYPKQNHVFLRTTNRQSATSATSSKALWEVEVVQHDPCRGGAGKWNSLYRFKHLATGMY 320 (2706)
T ss_pred hccCcEEEeecccccceeehhcccccceEEEeccCCcccccccccccceeEEEEecCCCCCcccchhhhhhhhhhcccce
Confidence 457888999854 679999998754 566652 12267899999999743 2 4568887 99999
Q ss_pred cccCCCC
Q 021823 64 LTASNQP 70 (307)
Q Consensus 64 L~as~~~ 70 (307)
|+|-..+
T Consensus 321 LaAE~~~ 327 (2706)
T KOG3533|consen 321 LAAEPSP 327 (2706)
T ss_pred eecCCCc
Confidence 9996554
No 29
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=46.19 E-value=1.3e+02 Score=22.78 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=56.4
Q ss_pred EEeec--CCceEeeec--CCCeEEecCCCCC-CCCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceEEeeCC
Q 021823 11 RLRSH--HDKFLIAEE--DEESVTQDRNGSS-KSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVP 85 (307)
Q Consensus 11 RLRs~--~g~YL~ADe--Dg~~Vs~~~~~~s-~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v~Q~~~ 85 (307)
+|++. .|+.|-+.. +|..|.+..-... .+-.|.+.. ...+++++ .+++|.+.... .|..+.+...
T Consensus 2 ~~~~~~~~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~----~g~~~~~~-~~~Cl~~~~~~-----~~~~~~~~~c 71 (124)
T cd00161 2 TIRNVNNTGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS----DGTIRIKS-SNLCLDVGGDA-----PGSKVRLYTC 71 (124)
T ss_pred eeEeCCCCCeEEECCCCCCCCEEEEEECCCCCccCCEEEeC----CCeEEEcC-CCeEEcccCCC-----CCCEEEEEEC
Confidence 35554 478887776 3667776643333 677998875 46777776 78888875533 3445554432
Q ss_pred CCCCCCcceeEEeeCCEEEEecCCcceeccCCC
Q 021823 86 GRLDSSVEWEPVREANQVKLKTRYGHFLRANGG 118 (307)
Q Consensus 86 ~~~d~~v~W~~v~~g~~V~Lr~~~gr~LRANg~ 118 (307)
+....+-.|..... +.+..+. ++..|-..+.
T Consensus 72 ~~~~~~Q~W~~~~~-~~i~~~~-~~~cl~~~~~ 102 (124)
T cd00161 72 SGGSDNQRWTFNKD-GTIRNLK-SGKCLDVKGG 102 (124)
T ss_pred CCCCcCCEEEECCC-cEEEECC-CCeEEeCCCC
Confidence 23244667876433 3343332 5677755543
No 30
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=45.80 E-value=32 Score=27.41 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=32.1
Q ss_pred eCcHHHHHHHHHHHhCC--CcEEEEeeCCCCCcccee
Q 021823 239 GNGVDELTQKLREELGI--QDIVVCTRSPLNGKLYPL 273 (307)
Q Consensus 239 G~Sv~~Lr~~L~~~~g~--~di~lCvRag~~GrLtPL 273 (307)
|-|..+|+++|.+++++ +.|+|.-|.---|.+.||
T Consensus 20 ~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l 56 (80)
T cd06406 20 GLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL 56 (80)
T ss_pred CCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc
Confidence 88999999999999998 789999999999998775
No 31
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=43.91 E-value=59 Score=25.80 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.7
Q ss_pred eCcHHHHHHHHHHHhCC--CcEEEEeeCCCCC-cccee
Q 021823 239 GNGVDELTQKLREELGI--QDIVVCTRSPLNG-KLYPL 273 (307)
Q Consensus 239 G~Sv~~Lr~~L~~~~g~--~di~lCvRag~~G-rLtPL 273 (307)
|-++..|+..|++++.+ +.++|+-|+.-.+ .+.||
T Consensus 16 g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l 53 (78)
T cd06411 16 GADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPI 53 (78)
T ss_pred CCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeec
Confidence 99999999999999887 6799999999887 88886
No 32
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=41.77 E-value=36 Score=29.62 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=42.9
Q ss_pred CCCcEEEEeec--CCceEeeecCCCeEEecCCCCC----CCCeeEEEeecCCCCEEEecc-cC-CCccccCCC
Q 021823 5 HNAKAVRLRSH--HDKFLIAEEDEESVTQDRNGSS----KSAKWTVESVPGSQNIIRLKS-CY-GKYLTASNQ 69 (307)
Q Consensus 5 ~d~~~VRLRs~--~g~YL~ADeDg~~Vs~~~~~~s----~na~W~Ve~~~~~~~~vlL~s-AY-GRYL~as~~ 69 (307)
.|...|-|.|. =|.||.. .++ .|.+.++..+ ..|-|..+.-..+..++.|+| .| |+||...+.
T Consensus 48 a~~~~vSfES~~~PG~yLrh-~~~-~v~l~~~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~~ 118 (142)
T PF05270_consen 48 ADSSCVSFESVNYPGYYLRH-SNF-RVRLEKNDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHYNG 118 (142)
T ss_dssp S-TTCEEEEESSSTTEEEEE-ETT-EEEEEE--SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEETT
T ss_pred CCCCEEEEEECCCCCcEEEE-ECC-EEEEeecCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEECC
Confidence 35668899986 4899976 444 4777765444 568898887444568999999 67 999986543
No 33
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=38.80 E-value=27 Score=30.82 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=50.3
Q ss_pred CCCCeeEEEeecC----C-----CCEEEecc-cCCCccccCCCCCCCCCC---cceEEee-CC----CCCCCCcc-eeEE
Q 021823 37 SKSAKWTVESVPG----S-----QNIIRLKS-CYGKYLTASNQPFLLGMT---GRKVIQS-VP----GRLDSSVE-WEPV 97 (307)
Q Consensus 37 s~na~W~Ve~~~~----~-----~~~vlL~s-AYGRYL~as~~~~~~G~~---G~~v~Q~-~~----~~~d~~v~-W~~v 97 (307)
+.|+.|.||.+.. + +..|||+- .-|+||.+.+..++.--+ -..+..- +. +..|..+. |+..
T Consensus 45 ~~~slW~IE~~~~~~~~g~~v~~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~ 124 (190)
T PF02815_consen 45 SANSLWQIEPVSEDPWSGGPVKWGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEK 124 (190)
T ss_dssp SGGGEEEEEE-TSSTTTTSB-BTTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEE
T ss_pred ccccceEEecCCCCcccCCcccCCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEec
Confidence 5678899998432 1 37999998 999999998887555333 1222221 11 11122111 2211
Q ss_pred ----------ee-CCEEEEecC-CcceeccCCC-CCCCC
Q 021823 98 ----------RE-ANQVKLKTR-YGHFLRANGG-LPPWR 123 (307)
Q Consensus 98 ----------~~-g~~V~Lr~~-~gr~LRANg~-~~pwr 123 (307)
.. +..++|+|. .|.||-+... ++-|.
T Consensus 125 ~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~lp~wg 163 (190)
T PF02815_consen 125 SSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVKLPEWG 163 (190)
T ss_dssp ESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEES-TTT
T ss_pred ccCCccCCcEEecccEEEEEECCcCEEEecCCccccccc
Confidence 11 358999888 5899988754 56676
No 34
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=37.85 E-value=1.3e+02 Score=23.31 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.3
Q ss_pred eeCcHHHHHHHHHHHhCC--CcEEEEeeCCCCCcccee
Q 021823 238 KGNGVDELTQKLREELGI--QDIVVCTRSPLNGKLYPL 273 (307)
Q Consensus 238 ~G~Sv~~Lr~~L~~~~g~--~di~lCvRag~~GrLtPL 273 (307)
.+-+|.+|+++|+..+|. .+..|+.+.+..+.+.+|
T Consensus 21 ~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l 58 (84)
T cd01789 21 RGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKL 58 (84)
T ss_pred CCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeec
Confidence 467899999999999997 568888788775555444
No 35
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=34.80 E-value=35 Score=27.17 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHhC----CCcEEEEeeCCCCCccceee
Q 021823 240 NGVDELTQKLREELG----IQDIVVCTRSPLNGKLYPLR 274 (307)
Q Consensus 240 ~Sv~~Lr~~L~~~~g----~~di~lCvRag~~GrLtPL~ 274 (307)
-++.+|++++.+-+. -+.|+||.+..--+||.|+-
T Consensus 5 V~i~e~k~~~S~lL~rV~aGEev~IT~~G~PVArivp~~ 43 (84)
T COG4118 5 VNIRELRTHLSELLRRVRAGEEVIITKRGRPVARLVPLA 43 (84)
T ss_pred ccHHHHHHHHHHHHHHHhCCCEEEEeeCCeEEEEEeecC
Confidence 367889999888422 17899999777788888874
No 36
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=31.34 E-value=90 Score=28.46 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCcEEEEeec-CCceEeeecCC--------CeEEecCCCCCCCCeeEEEeec-----CC----CCEEEecc-cCCCcccc
Q 021823 6 NAKAVRLRSH-HDKFLIAEEDE--------ESVTQDRNGSSKSAKWTVESVP-----GS----QNIIRLKS-CYGKYLTA 66 (307)
Q Consensus 6 d~~~VRLRs~-~g~YL~ADeDg--------~~Vs~~~~~~s~na~W~Ve~~~-----~~----~~~vlL~s-AYGRYL~a 66 (307)
-|+.|.|+=. -+|||....+. -.|.|+...+-.++.|++++.- ++ ++-|.|.+ +.++||..
T Consensus 100 YGq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~~~~e~s~F~i~P~~k~r~~Gd~V~~gD~i~l~~~~~~~~Lh~ 179 (214)
T PF08709_consen 100 YGQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEFSSGENSWFRIHPAYKQRSEGDPVRYGDQIILISVSTEQYLHV 179 (214)
T ss_dssp TTEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESSSSSGGGEEEEEESSTTS-TTSB-BTT-EEEEEETTT-SEEEE
T ss_pred ecceEEEeEeCccEEEEEeCCCCCcccccceEEEeccCCCcccEEEEEEcchheEcCCCeeeeCCEEEEEECCCCCcccc
Confidence 4778889853 78999877555 2688887654367999999742 11 37788888 88999995
Q ss_pred C
Q 021823 67 S 67 (307)
Q Consensus 67 s 67 (307)
+
T Consensus 180 s 180 (214)
T PF08709_consen 180 S 180 (214)
T ss_dssp E
T ss_pred c
Confidence 4
No 37
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=26.15 E-value=52 Score=26.13 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=15.0
Q ss_pred eeecCCCCCCce-----------EEEEEcCCCHHHH
Q 021823 273 LRLQLPPNNSDM-----------HVIVVPQSSKVAR 297 (307)
Q Consensus 273 L~ldLP~n~~~m-----------~IVvv~~~S~~a~ 297 (307)
|++||||+.... ..|+|++.++.+.
T Consensus 4 LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~ 39 (81)
T PF10609_consen 4 LIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELAL 39 (81)
T ss_dssp EEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--H
T ss_pred EEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHH
Confidence 789999998443 4788888877553
No 38
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=24.99 E-value=91 Score=29.18 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=22.3
Q ss_pred HHHHHHHhCCC-cEEEEeeCCCCCccceeeecCCCCCCceEEEEEcCC
Q 021823 246 TQKLREELGIQ-DIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQS 292 (307)
Q Consensus 246 r~~L~~~~g~~-di~lCvRag~~GrLtPL~ldLP~n~~~m~IVvv~~~ 292 (307)
-+||+||||+. .|.||.-.-.+ |==-.|.+++||+|.-.
T Consensus 123 iREl~EEtGy~gkv~~~s~~~f~--------DPGltn~~~~iv~v~id 162 (225)
T KOG3041|consen 123 IRELEEETGYKGKVDMVSPTVFL--------DPGLTNCNLCIVVVDID 162 (225)
T ss_pred HHHHHHHhCccceeeeccccEEc--------CCCCCCCceEEEEEEec
Confidence 34678889974 45555432111 10116778888887654
No 39
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=24.18 E-value=1.4e+02 Score=25.48 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=34.9
Q ss_pred HHHHHHhCCCcEEEEeeCCCCCccceeeecCCCCCCceEEEEEcCCCHHHHhhh
Q 021823 247 QKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREFL 300 (307)
Q Consensus 247 ~~L~~~~g~~di~lCvRag~~GrLtPL~ldLP~n~~~m~IVvv~~~S~~a~~l~ 300 (307)
.+++++.++.-|++|-++ +.+|++ +..++|+|..|.-+|+..+
T Consensus 3 ~~~a~r~~i~vi~Van~~----------h~~~~~-~~~~~i~Vd~g~DaaD~~I 45 (130)
T PF02639_consen 3 IRVAKRYGIPVIFVANYS----------HRLPRS-PYVEMIVVDSGFDAADFYI 45 (130)
T ss_pred HHHHHHHCCEEEEEeCCC----------ccCCCC-CCeEEEEECCCCChHHHHH
Confidence 367889999999999987 555665 7889999999998887654
No 40
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=24.09 E-value=1.5e+02 Score=19.78 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=30.2
Q ss_pred eeCcHHHHHHHHHHHhCCCcEEEEeeCCCCCccceeeecCCCCCCceEEE
Q 021823 238 KGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVI 287 (307)
Q Consensus 238 ~G~Sv~~Lr~~L~~~~g~~di~lCvRag~~GrLtPL~ldLP~n~~~m~IV 287 (307)
.|.++.++.+++....+ ..++.|. .+|++..|..-|+. +..+++|
T Consensus 15 ~~~t~~~~~~~~~~~~~-~~~v~~~---vng~~~dL~~~l~~-~~~ie~i 59 (61)
T cd01667 15 KGTTPLDIAKSISPGLA-KKAVAAK---VNGELVDLSRPLEE-DCELEII 59 (61)
T ss_pred CCCCHHHHHHHHHHHHH-hheEEEE---ECCEEecCCcCcCC-CCEEEEE
Confidence 48899998888876543 4566655 57999887655554 3455554
No 41
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=23.20 E-value=1.8e+02 Score=22.63 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=28.4
Q ss_pred EEEEEeeC--cHHHHHHHHHHHhCC---CcEEEEeeCCCCCccce
Q 021823 233 FAMTFKGN--GVDELTQKLREELGI---QDIVVCTRSPLNGKLYP 272 (307)
Q Consensus 233 ~sf~F~G~--Sv~~Lr~~L~~~~g~---~di~lCvRag~~GrLtP 272 (307)
.+.+|.|. ||.+|+.++.+.-++ .|+-|++-+.-.+.-++
T Consensus 12 ~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~t~eeY~ 56 (74)
T PF08783_consen 12 DTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQTGEEYK 56 (74)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESSS--EE-
T ss_pred cEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCCCCCccC
Confidence 56888876 689999999777444 57888888877787665
No 42
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=22.67 E-value=65 Score=24.75 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=24.0
Q ss_pred EeCCCCCCCCCCcccEEEEEeeCcHHHHHHHHHHHhC
Q 021823 218 MADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELG 254 (307)
Q Consensus 218 ~Add~G~v~~~~~~~~sf~F~G~Sv~~Lr~~L~~~~g 254 (307)
+-+.||+|.-.-- +. +.-.|.++.+++++|++++.
T Consensus 34 ~V~~dG~I~lP~i-G~-v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 34 TVDPDGTISLPLI-GP-VKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp E--TTSEEEETTT-EE-EE-TT--HHHHHHHHHHHHT
T ss_pred EECCCCcEeeccc-ce-EEECCCCHHHHHHHHHHHHH
Confidence 3678999975433 44 99999999999999999864
No 43
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=22.31 E-value=2.5e+02 Score=24.97 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=41.9
Q ss_pred ecC-CceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cCCCccccCCCCCCCC
Q 021823 14 SHH-DKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CYGKYLTASNQPFLLG 74 (307)
Q Consensus 14 s~~-g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AYGRYL~as~~~~~~G 74 (307)
++. |.+|-+..||. |.=.++..+.-+.-.+.-+ +-..|.++| .-|+||+-.....+-|
T Consensus 32 ~~t~g~hLqi~p~g~-V~Gt~~~~s~~siLei~sv--~~GvV~IkGV~s~~YL~Mn~~G~Lyg 91 (155)
T KOG3885|consen 32 CRNGGHFLRILPDGT-VDGTRDRSDQHTIFEIITV--AVGVVAIKGVESELYLAMNKEGKLYA 91 (155)
T ss_pred EcCCCEEEEEcCCCc-cccccccCCCceeEEEEEe--eecEEEEEEeeceeEEEECCCCcEec
Confidence 555 89999999986 6555666676776665554 235999999 7899999766554443
No 44
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=21.88 E-value=1.1e+02 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.1
Q ss_pred EEEeeCcHHHHHHHHHHHhCC--CcEEEEee
Q 021823 235 MTFKGNGVDELTQKLREELGI--QDIVVCTR 263 (307)
Q Consensus 235 f~F~G~Sv~~Lr~~L~~~~g~--~di~lCvR 263 (307)
+-.-.+|+.+|+.+..+.+++ .+++||.-
T Consensus 16 ~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~ 46 (78)
T cd01615 16 KGVAASSLEELLSKACEKLKLPSAPVTLVLE 46 (78)
T ss_pred EEEEcCCHHHHHHHHHHHcCCCCCCeEEEEe
Confidence 456679999999999999888 67888863
No 45
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.50 E-value=1.9e+02 Score=32.40 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.4
Q ss_pred HHHHHH
Q 021823 244 ELTQKL 249 (307)
Q Consensus 244 ~Lr~~L 249 (307)
+|+.+.
T Consensus 661 kL~~~F 666 (1102)
T KOG1924|consen 661 KLALKF 666 (1102)
T ss_pred HHHHHh
Confidence 344443
Done!