Query 021824
Match_columns 307
No_of_seqs 160 out of 1717
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.5E-38 9.8E-43 289.9 32.3 272 32-306 13-288 (455)
2 PRK10367 DNA-damage-inducible 100.0 2E-35 4.3E-40 272.0 32.2 272 32-306 5-279 (441)
3 PRK00187 multidrug efflux prot 100.0 3.5E-35 7.6E-40 272.4 34.0 272 32-306 6-283 (464)
4 PRK10189 MATE family multidrug 100.0 1.9E-34 4.1E-39 267.9 33.7 278 24-306 19-306 (478)
5 PRK09575 vmrA multidrug efflux 100.0 1.2E-33 2.6E-38 261.6 31.3 272 32-306 8-282 (453)
6 PRK01766 multidrug efflux prot 100.0 4E-33 8.7E-38 258.7 33.3 272 32-306 8-286 (456)
7 TIGR00797 matE putative efflux 100.0 7.6E-28 1.6E-32 215.1 31.0 259 44-305 1-262 (342)
8 KOG1347 Uncharacterized membra 100.0 4.8E-27 1E-31 215.7 26.5 272 32-305 24-295 (473)
9 PRK00187 multidrug efflux prot 99.9 4.7E-25 1E-29 204.8 29.1 206 32-238 232-444 (464)
10 COG0534 NorM Na+-driven multid 99.9 6.7E-25 1.5E-29 202.5 27.7 212 29-242 234-447 (455)
11 PRK10189 MATE family multidrug 99.9 9.8E-25 2.1E-29 203.0 27.7 210 32-242 255-466 (478)
12 PRK01766 multidrug efflux prot 99.9 1.2E-24 2.5E-29 202.1 27.2 208 32-240 235-444 (456)
13 PRK09575 vmrA multidrug efflux 99.9 8.8E-24 1.9E-28 195.8 27.3 204 32-238 230-436 (453)
14 TIGR01695 mviN integral membra 99.9 3.1E-22 6.7E-27 188.0 31.1 234 32-275 219-457 (502)
15 PRK10367 DNA-damage-inducible 99.9 1.6E-20 3.6E-25 173.1 27.6 202 32-241 228-433 (441)
16 PF03023 MVIN: MviN-like prote 99.9 4.3E-19 9.4E-24 163.9 31.2 211 26-238 188-403 (451)
17 TIGR01695 mviN integral membra 99.9 6.3E-19 1.4E-23 165.6 32.4 258 38-304 2-268 (502)
18 TIGR02900 spore_V_B stage V sp 99.9 1E-18 2.2E-23 163.7 29.7 202 32-238 221-434 (488)
19 COG0728 MviN Uncharacterized m 99.8 5.5E-18 1.2E-22 155.4 31.3 247 25-280 221-472 (518)
20 TIGR02900 spore_V_B stage V sp 99.8 2.3E-18 5E-23 161.2 28.2 244 39-286 2-254 (488)
21 PRK15099 O-antigen translocase 99.8 1.7E-18 3.8E-23 158.9 26.5 257 38-305 3-262 (416)
22 PF01554 MatE: MatE; InterPro 99.8 2.5E-21 5.5E-26 154.5 4.8 160 44-204 1-162 (162)
23 PRK15099 O-antigen translocase 99.8 7.1E-18 1.5E-22 154.9 26.4 201 31-238 210-412 (416)
24 PRK10459 colanic acid exporter 99.8 1.4E-16 2.9E-21 149.5 29.1 200 32-237 203-404 (492)
25 COG2244 RfbX Membrane protein 99.8 1.4E-15 2.9E-20 142.3 27.7 199 31-235 208-408 (480)
26 PF03023 MVIN: MviN-like prote 99.7 8.7E-14 1.9E-18 128.8 29.4 231 66-304 5-243 (451)
27 TIGR00797 matE putative efflux 99.6 1.3E-13 2.7E-18 123.3 17.7 130 31-161 211-341 (342)
28 COG0728 MviN Uncharacterized m 99.6 3.1E-11 6.7E-16 111.3 31.4 263 36-303 7-276 (518)
29 PF01943 Polysacc_synt: Polysa 99.4 5.8E-10 1.2E-14 96.0 28.9 249 39-305 2-252 (273)
30 KOG1347 Uncharacterized membra 99.4 6E-13 1.3E-17 122.8 10.7 211 31-242 242-456 (473)
31 PRK10459 colanic acid exporter 99.3 1.2E-09 2.7E-14 102.6 25.8 246 36-304 5-253 (492)
32 PF13440 Polysacc_synt_3: Poly 99.2 5.2E-08 1.1E-12 82.9 28.0 226 55-305 3-230 (251)
33 COG2244 RfbX Membrane protein 99.1 3.3E-08 7.1E-13 92.6 22.2 248 33-299 3-254 (480)
34 PF07260 ANKH: Progressive ank 98.9 4.6E-06 1E-10 71.4 27.1 254 32-292 7-271 (345)
35 PF14667 Polysacc_synt_C: Poly 98.9 8.7E-08 1.9E-12 74.7 15.0 79 158-238 2-80 (146)
36 PF04506 Rft-1: Rft protein; 98.8 1.2E-06 2.7E-11 82.4 22.1 203 36-239 253-471 (549)
37 KOG2864 Nuclear division RFT1 98.6 4E-06 8.7E-11 74.9 17.6 202 38-241 241-452 (530)
38 PF01943 Polysacc_synt: Polysa 97.9 0.00014 3.1E-09 62.2 10.7 72 32-104 201-273 (273)
39 PF13440 Polysacc_synt_3: Poly 97.1 0.0061 1.3E-07 51.5 10.4 66 37-103 184-251 (251)
40 COG4267 Predicted membrane pro 93.5 5.6 0.00012 35.8 21.0 189 32-239 22-212 (467)
41 PF04506 Rft-1: Rft protein; 89.4 21 0.00045 34.3 16.1 263 42-306 7-303 (549)
42 COG4267 Predicted membrane pro 81.4 42 0.00091 30.5 14.0 113 110-226 320-434 (467)
43 PF03904 DUF334: Domain of unk 68.6 32 0.00069 28.6 7.4 64 106-169 140-212 (230)
44 KOG0569 Permease of the major 66.9 1.2E+02 0.0025 28.8 14.7 35 180-216 399-433 (485)
45 PF05975 EcsB: Bacterial ABC t 65.6 1.1E+02 0.0024 27.9 15.8 35 108-142 89-124 (386)
46 PF02487 CLN3: CLN3 protein; 52.8 1.9E+02 0.0041 26.7 12.3 31 25-55 232-262 (402)
47 PF03814 KdpA: Potassium-trans 44.2 3E+02 0.0065 26.4 15.8 106 21-131 48-178 (552)
48 PF04854 DUF624: Protein of un 39.5 1E+02 0.0022 20.5 5.1 34 24-57 41-74 (77)
49 PF14184 YrvL: Regulatory prot 35.6 2E+02 0.0043 21.9 12.6 98 121-220 9-107 (132)
50 PF05313 Pox_P21: Poxvirus P21 35.2 2E+02 0.0042 23.2 6.5 26 213-238 136-161 (189)
51 COG1987 FliQ Flagellar biosynt 33.0 1.7E+02 0.0038 20.5 6.2 51 109-159 3-53 (89)
52 COG0798 ACR3 Arsenite efflux p 31.9 3.8E+02 0.0082 24.0 13.9 28 211-238 301-329 (342)
53 KOG2234 Predicted UDP-galactos 31.9 1.3E+02 0.0027 27.0 5.6 50 219-268 50-101 (345)
54 PRK09546 zntB zinc transporter 29.3 2.2E+02 0.0047 25.2 6.9 18 223-240 306-323 (324)
55 PF02990 EMP70: Endomembrane p 29.2 5.2E+02 0.011 24.7 11.2 20 156-175 372-391 (521)
56 PF07260 ANKH: Progressive ank 29.1 2.4E+02 0.0052 25.2 6.7 50 32-81 231-286 (345)
57 PRK06010 fliQ flagellar biosyn 28.3 2.1E+02 0.0046 20.0 6.2 51 108-158 2-52 (88)
58 PF01102 Glycophorin_A: Glycop 28.1 78 0.0017 23.7 3.2 24 215-238 68-91 (122)
59 PRK15350 type III secretion sy 27.1 2.2E+02 0.0049 19.9 6.2 50 109-158 3-52 (88)
60 PF04505 Dispanin: Interferon- 27.0 2.1E+02 0.0046 19.6 6.1 37 93-129 37-73 (82)
61 TIGR00383 corA magnesium Mg(2+ 25.9 2.7E+02 0.0058 24.4 6.9 17 224-240 301-317 (318)
62 KOG3097 Predicted membrane pro 24.6 3.9E+02 0.0085 24.2 7.2 53 32-84 25-77 (390)
63 PF07672 MFS_Mycoplasma: Mycop 23.9 4.7E+02 0.01 22.6 7.5 19 32-50 94-112 (267)
64 TIGR01402 fliQ flagellar biosy 22.9 2.7E+02 0.006 19.5 6.2 50 109-158 3-52 (88)
65 COG4536 CorB Putative Mg2+ and 21.4 6.4E+02 0.014 23.1 8.2 28 201-230 77-104 (423)
66 COG0598 CorA Mg2+ and Co2+ tra 21.2 3.5E+02 0.0075 23.9 6.6 19 222-240 303-321 (322)
67 PRK12781 fliQ flagellar biosyn 20.1 3.2E+02 0.0069 19.1 6.2 50 109-158 3-52 (88)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.5e-38 Score=289.86 Aligned_cols=272 Identities=21% Similarity=0.244 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++..|+++++++|.+++++.+.+++.+|++++|++|++++|+.++++++..++ +.+..+++.+..++++|++|+||+++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 78899999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
+++..++++.++++++++.. +.+++.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+.+|+.||++.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999997777 67999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHhHhhhc-cC-CccchhHHHHHHHHHHHHHHHHHHHHhcccc-ccccCCCCHHHHhcHHHHHHHHhHHH
Q 021824 191 SCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTAC-AESRVPISMELFQGIGEFFHFAIPSA 267 (307)
Q Consensus 191 ~~~~~~~~i~l~~~li~~-~~-~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 267 (307)
++++.++|+++|++|+++ .+ +|+.|+++||++++++.+++..++++++++. .....+..+.+++..++++++|+|.+
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~ 251 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF 251 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence 999999999999999988 56 9999999999999999999999998877642 22223334566688889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824 268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC 306 (307)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~ 306 (307)
+++..+...+...+.+++++|+..+| ||++..+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~G~~~lA--a~~i~~~i~~~ 288 (455)
T COG0534 252 LESLSESLGFLLLTLFVARLGTVALA--AYGIALRIASF 288 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHH--HHHHHHHHHHH
Confidence 99999999999999999999999988 99999999875
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2e-35 Score=271.98 Aligned_cols=272 Identities=15% Similarity=0.133 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~ 110 (307)
+++.|+++++++|.++++++..+++.+|+.++|++ |++++|+.+++.++.++. ..+..+++.+..+++||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999998 677999999999999987 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824 111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (307)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~ 189 (307)
++++..++++.++++++++.. ....+.++++.+++.|+|+.+.+.+|++++.++.|+..+..++++++|+.||++.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 999999999999999999888 5577889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHH-HhcHHHHHHHHhHHHH
Q 021824 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL-FQGIGEFFHFAIPSAV 268 (307)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~ 268 (307)
.++++.++|+++++++++.+++|+.|+++||.+++.+.+++..++++++++.++...+..+++ ++..|++++++.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 999999999999999998888999999999999999998887777655322111111111112 2467899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC 306 (307)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~ 306 (307)
+...+...+.+.+.+++++|+.++| ||++..|+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~~alA--a~~I~~~i~~~ 279 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLGSDIIA--VNAVLMTLLTF 279 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHH
Confidence 9999999999999999999998877 99999999875
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.5e-35 Score=272.41 Aligned_cols=272 Identities=22% Similarity=0.271 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
+++.|+++++++|.+++++...+...+|+.+++++|++++|+++++.++.++. ..+..|++.+..+.+||++|++|+|+
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 67899999999999999999999999999999999999999999999999987 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSS 191 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~ 191 (307)
+++..+++..+.++++++..++..+.++++.+++.|+|+.+.+.+|++++.++.|+..+...+++++|+.||++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999877555577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCCHHHHhcHHHHHHHHhH
Q 021824 192 CAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RVPISMELFQGIGEFFHFAIP 265 (307)
Q Consensus 192 ~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p 265 (307)
+++.++|+++||+|+++ |++|+.|+++|+.+++....++..+++++++..++. +.++.+.+++..|+++++++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 99999999999999864 468999999999999988887776666554322211 122223456678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824 266 SAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC 306 (307)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~ 306 (307)
.+++.+.+...+.+.+.+++++|+.++| |+++..++..+
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G~~alA--a~~i~~~i~~l 283 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGSTQLA--AHQIALQIVSV 283 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHH
Confidence 9999999999999999999999999888 99999988754
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.9e-34 Score=267.93 Aligned_cols=278 Identities=15% Similarity=0.152 Sum_probs=245.1
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021824 24 SSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQA 103 (307)
Q Consensus 24 ~~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~ 103 (307)
|++.|+ -+.+|+++++++|.++++++..+...+|+.+++++|++++|+++++.++..+. +.+..|++++..+++||+
T Consensus 19 ~~~~~~--~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~ 95 (478)
T PRK10189 19 KRKSYR--VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFS 95 (478)
T ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444553 35589999999999999999999999999999999999999999999999987 999999999999999999
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021824 104 YGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIG--QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180 (307)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~ 180 (307)
+|+||+|++++..+++..++++++++.+ +.++++++++.++. .|+|+.+.+.+|+++..++.|+..+..+.++++|+
T Consensus 96 ~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~ 175 (478)
T PRK10189 96 LGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRG 175 (478)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888 55788899999984 68999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCC-CCHHHH
Q 021824 181 QSLIIPMFLSSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTA--CAESRVP-ISMELF 253 (307)
Q Consensus 181 ~g~~~~~~~~~~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~ 253 (307)
.||++.++..++++.++|+++++++++. |++|+.|+++|+.+++.+..++..+++.++++ .+..+.+ +++.++
T Consensus 176 ~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (478)
T PRK10189 176 AGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNF 255 (478)
T ss_pred cCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCH
Confidence 9999999999999999999999999864 47999999999999999998887666544311 1111111 122356
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824 254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC 306 (307)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~ 306 (307)
+.+++++++|+|.+++.......+.+.+.+++++|+.++| ||++..|+.++
T Consensus 256 ~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~A--a~~I~~~i~~~ 306 (478)
T PRK10189 256 AIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIA--GNFIAFSIAAL 306 (478)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHH
Confidence 7788999999999999999999999999999999999887 99999998764
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.2e-33 Score=261.58 Aligned_cols=272 Identities=13% Similarity=0.065 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~ 110 (307)
++..|+++++++|.+++++...++..+|+.+++++ |++++++++++.++.++. ..+..+++.+..++++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45679999999999999999999999999999996 999999999999999987 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824 111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (307)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~ 189 (307)
++++..++++.++++++++.. +.+.++++++.+++.|+++.+.+.+|+++..++.|+..+.....+++|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 999999999999999999888 5688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHH
Q 021824 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 269 (307)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 269 (307)
.++++.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++...+...+..+.+++..|+++++|+|.+++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888899999999999999999988877766543332222222234567788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHhhhccc
Q 021824 270 ICLEWWSFELLILMSGLLPN-PQLETSVLSVWYVDIDC 306 (307)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~i~~~i~~~ 306 (307)
.......+.+.+.+.+++|+ .++| ++++..++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~lA--a~~i~~~i~~~ 282 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGSALTVG--AYAIVGYLMVL 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHH--HHHHHHHHHHH
Confidence 99999999999999999996 4666 99999888654
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4e-33 Score=258.70 Aligned_cols=272 Identities=18% Similarity=0.268 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++.... ..+..|++.+..|.+||++|++|+|+
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 78899999999999999999999999999999999999999999999998776 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
.++..++++.+++++++++. +.+.++++++.+++.|+++.+.+.+|+++.+++.|+..+..++++++|+.||++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999888 55778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCCHHHHhcHHHHHHHHh
Q 021824 191 SCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAI 264 (307)
Q Consensus 191 ~~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 264 (307)
++++.++|+++++++++. |++|+.|+++|+.+++.+..++..++++++++.+ +.+.++.+.+++..|+++++++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~ 246 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGL 246 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccc
Confidence 999999999999999853 5689999999999999999998887776554321 1222222345667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824 265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC 306 (307)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~ 306 (307)
|..++...+...+.+.+.+++++|+.++| ++++..++..+
T Consensus 247 P~~~~~~~~~~~~~~~~~~~~~~G~~~lA--a~~i~~~i~~~ 286 (456)
T PRK01766 247 PIGLAIFFEVSLFAVVTLLVSPLGTVTVA--AHQIALNFSSL 286 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcChHHHH--HHHHHHHHHHH
Confidence 99999999999999999999999998888 99999887654
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.97 E-value=7.6e-28 Score=215.15 Aligned_cols=259 Identities=26% Similarity=0.393 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHH
Q 021824 44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL 123 (307)
Q Consensus 44 p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 123 (307)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..+++++..|.++|+.|++|+|++++..+.+..+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 88999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhH
Q 021824 124 FLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPIC 202 (307)
Q Consensus 124 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~ 202 (307)
.+++++.+ +++++++++..+++.|++..+.+..++++++++.++.++..+..+++|+.||++..+..++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 99999988 56889999999888788888999999999999999999999999999999999999999999999999999
Q ss_pred hHhhh-ccC-CccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021824 203 WSLVY-KSG-LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELL 280 (307)
Q Consensus 203 ~~li~-~~~-~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 280 (307)
+.+++ ..+ +|+.|+++++.+++++.+++..++.+++++.+..|.+..+.+++..|++.+.++|..+.+......+.+.
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 556 7799999999999999999887777653332222222223455678899999999999999999999999
Q ss_pred HHHHhcCCchhhhhHHHHHHhhhcc
Q 021824 281 ILMSGLLPNPQLETSVLSVWYVDID 305 (307)
Q Consensus 281 ~~~~~~~g~~~~a~~~~~i~~~i~~ 305 (307)
+.+.+.+|+.+++ ++++..++..
T Consensus 240 ~~i~~~~g~~~v~--~~~~a~~~~~ 262 (342)
T TIGR00797 240 ALLVARLGSIALA--AHQIALNVES 262 (342)
T ss_pred HHHHHHcCcHHHH--HHHHHHHHHH
Confidence 9999999998877 8888877654
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.96 E-value=4.8e-27 Score=215.68 Aligned_cols=272 Identities=42% Similarity=0.734 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
+++.|++.+++.|.++..+.+.....++..++||+|+.++++.+++++..+...+.+..|+..+..++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 68899999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSS 191 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~ 191 (307)
...+.+++..+....+++...++.+.+++...+++|+++...+..|.+++.+..+.+........++|++++..+..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHH
Q 021824 192 CAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMIC 271 (307)
Q Consensus 192 ~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 271 (307)
....++++++++++++.+++|..|++++..+++++...++..|.+... +.+.|..++++ ++.++++++.++|+++|.+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999988887665 67788888777 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhcc
Q 021824 272 LEWWSFELLILMSGLLPNPQLETSVLSVWYVDID 305 (307)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~ 305 (307)
+|++.++++.+..+.+++..+++++.+|+.++.+
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~ 295 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG 295 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999997777779999998765
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.95 E-value=4.7e-25 Score=204.75 Aligned_cols=206 Identities=17% Similarity=0.249 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++.+|+++++++|.+++++.+.....+|+.+++++|++++|+++++.++..+. +.+..|++++.+++++|++|+||+|+
T Consensus 232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 67799999999999999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC--Ch---hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchh
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ--DP---QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII 185 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~ 185 (307)
+++..+.+..++.+++++.. +++++++++..++.+ |+ |+.+.+..|+++.+++.++..++.++.+.+||.||++
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~ 390 (464)
T PRK00187 311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR 390 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence 99999999999999999888 568899999999853 43 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 186 PMFLSSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 186 ~~~~~~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
.+++.++++ ++++++++|++.+.+++|+.|+|+++.+++.+..++....++.+
T Consensus 391 ~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 391 TTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 59999999999988889999999999999999988776655443
No 10
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=6.7e-25 Score=202.48 Aligned_cols=212 Identities=19% Similarity=0.231 Sum_probs=201.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccch
Q 021824 29 GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ 108 (307)
Q Consensus 29 ~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~ 108 (307)
+..++.+|+++++|+|..+.++.......+.+.+++++|++++|+|+++.++.++. +.+..|++++++++++|++|+||
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCC
Confidence 44478999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 021824 109 YQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~ 187 (307)
+|++++..+.+..+++++++... +++++++++..+|.+|+|+.+.+.+++++..+..++.+++.+..+++||.||++.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999988 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 021824 188 FLSSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA 242 (307)
Q Consensus 188 ~~~~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~ 242 (307)
++.++++ +++.+++.+++.+.+ +|..|+|++...++.+..++..+++++++|+.
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR 447 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999998 888899999998665 99999999999999999999998888876653
No 11
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.94 E-value=9.8e-25 Score=202.96 Aligned_cols=210 Identities=15% Similarity=0.056 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++.+|+++++|+|..++.....+...+.+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++|+||.|+
T Consensus 255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~~ 333 (478)
T PRK10189 255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIAQ 333 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 67899999999999999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
+++..+.+..++.+.++.+. +++++++++..+|.+|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++.
T Consensus 334 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i 413 (478)
T PRK10189 334 AERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWV 413 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHH
Confidence 99999999999999998888 56889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 021824 191 SCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA 242 (307)
Q Consensus 191 ~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~ 242 (307)
++++ +++.+|+.|++....++|+.|+|++..+++.+..++..+++++.+|++
T Consensus 414 ~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 414 SMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 9988 789999999987666799999999999999999999888888877765
No 12
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.94 E-value=1.2e-24 Score=202.07 Aligned_cols=208 Identities=16% Similarity=0.221 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++.+|+++++++|.+++.+.+.....++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|+||+++
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 67799999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
+++..+.+..+++.++++.. +++.+++++..++.+|+|+.+.+..|+++..+..++..++.+..+.+||.||++.++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 393 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFI 393 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHH
Confidence 99999999999999999888 66889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 021824 191 SCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240 (307)
Q Consensus 191 ~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~ 240 (307)
++++ +++++++.+++.+.+++|+.|+|+++.+++.+..++..+++++.+|
T Consensus 394 ~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (456)
T PRK01766 394 TFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQR 444 (456)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 4899999999988788999999999999999999988877766543
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.93 E-value=8.8e-24 Score=195.79 Aligned_cols=204 Identities=18% Similarity=0.156 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ-LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~-~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~ 110 (307)
++.+|+++++|.|..++.....+...+.+.+++++|+ +++|+++++.++..+. ..+..|++.+..+++||++|+||+|
T Consensus 230 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~~~ 308 (453)
T PRK09575 230 WSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQYD 308 (453)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCChH
Confidence 6778999999999999999999999999999999985 5899999999999997 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824 111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ-DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (307)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~ 188 (307)
++++..+.+..+++..+++.+ +++.+++++..+|.. |+|+.+.+.+|+++.+++.++.++..+..+++||.||++.++
T Consensus 309 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 388 (453)
T PRK09575 309 NIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKAL 388 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999999988 568899999999985 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
+.++.+.++++++.|++... +|+.|+|+++.+++.+..++..++++++
T Consensus 389 ~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 389 FISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99998888999999998743 8999999999999999888877666543
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.92 E-value=3.1e-22 Score=188.01 Aligned_cols=234 Identities=14% Similarity=0.129 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++.+|++++++.|..+++....+...+|+.+.+.+|++++++|+.+.++.+++...+..+++++..|.++|++|+||+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 67789999999999999999999999999886667999999999999999887345678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC----ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~ 186 (307)
.++..+++......++++.+ .++.++++++.++.+ |+|..+.+..++++++++.++..+..++.+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 99999999999999999988 568899999988865 5577888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHH
Q 021824 187 MFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPS 266 (307)
Q Consensus 187 ~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 266 (307)
+++.++.+.++|+++++++++ .+|..|+++|+.+++.+..++..++.+|+... .+..+..+++.|...++
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~as 448 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKG--------ILPFGVLKVLAKLVIAS 448 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CCchHHHHHHHHHHHHH
Confidence 999999999999999999984 49999999999999999998887777654211 11123344666767777
Q ss_pred HHHHHHHHH
Q 021824 267 AVMICLEWW 275 (307)
Q Consensus 267 ~~~~~~~~~ 275 (307)
.+|....+.
T Consensus 449 ~~m~~~~~~ 457 (502)
T TIGR01695 449 AIIGGVLYL 457 (502)
T ss_pred HHHHHHHHH
Confidence 776655443
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=1.6e-20 Score=173.08 Aligned_cols=202 Identities=20% Similarity=0.167 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++.+|++++.+.|..+++........+.+.+++++|++++|+|+++.++.++. +.+..|++++.+++++|++|+||+|+
T Consensus 228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~ 306 (441)
T PRK10367 228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQ 306 (441)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHH
Confidence 35789999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC---chhHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS---LIIPM 187 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g---~~~~~ 187 (307)
+++..+.+..++.+++.+.. +++++++++..+|.+|+|+.+.+..++++.++..+......++.+.++|.+ |++.+
T Consensus 307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~ 386 (441)
T PRK10367 307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99999999999999999988 568899999999999999999999999999876443334444444444444 59999
Q ss_pred HHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccc
Q 021824 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC 241 (307)
Q Consensus 188 ~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~ 241 (307)
++.+.++..+ .++.. +.+|..|+|++..+++.+..++..++++++ |+
T Consensus 387 ~~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~ 433 (441)
T PRK10367 387 MAVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WR 433 (441)
T ss_pred HHHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9988888442 12222 348999999999999999999887766554 53
No 16
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.87 E-value=4.3e-19 Score=163.95 Aligned_cols=211 Identities=17% Similarity=0.127 Sum_probs=194.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 021824 26 TTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYG 105 (307)
Q Consensus 26 ~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g 105 (307)
.+++...+..|++++...|..++....++...+|+.+.+.+++.++++++.++++.+++...+..+++++..|..++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~ 267 (451)
T PF03023_consen 188 PKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAA 267 (451)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33443367799999999999999999999999999999999999999999999999999778888999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021824 106 AQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIG----QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180 (307)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~ 180 (307)
+||.++.++..++++...+.+.+|.+ .++.++++++..+. .|.|..+.+..++++++++.|+.+++..+...+.+
T Consensus 268 ~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya 347 (451)
T PF03023_consen 268 EGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYA 347 (451)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 67999999998774 26677888999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 181 QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 181 ~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
.||+|.++..++++.++|+++++++... +|..|.++|+.++.++.+++..+.++|+
T Consensus 348 ~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 348 LGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred ccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999844 9999999999999999999988877665
No 17
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.87 E-value=6.3e-19 Score=165.60 Aligned_cols=258 Identities=9% Similarity=0.009 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhccchhhhHHH
Q 021824 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLAL-SSTAMAISLASVTGFSVL-LGMASALETLCGQAYGAQQYQRIGT 114 (307)
Q Consensus 38 il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~-a~~~i~~~l~~~~~~~~~-~~i~~a~~~~~s~~~g~~~~~~~~~ 114 (307)
+.|-+.-..++++...+.+.+|..++++ +|+++. ++|+++.++.+.+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4577788889999999999999999999 699999 899999999877623333 468888878776664433 67777
Q ss_pred HHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 115 QTYTAIFCLFLVCFP-LS-FLWIYAGKLLVLI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~-~~~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
....+.....+++.. .. +.+++++++..++ +.+++..+.+.+|++++.++.|+..+..+.++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766666654444 34 4577888888887 4467777899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHhHhhhccCCccchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHH
Q 021824 191 SCAALCLHIPICWSLVYKSGLGNLGGA--LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAV 268 (307)
Q Consensus 191 ~~~~~~~~i~l~~~li~~~~~G~~Ga~--~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 268 (307)
+++..+++++..+++. +++|..|++ +++.+++.+..++..++.++++.+.+. ++ ..+++..|++++.+.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP--RF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC--cC-CCCChhHHHHHHHHHHHHH
Confidence 9999888877655555 568999988 999999999888877666554321111 11 1234567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhc
Q 021824 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDI 304 (307)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~ 304 (307)
..........+...+.+.+|+.+++ +++...++.
T Consensus 235 ~~~~~~~~~~id~~~~~~~~~~~v~--~~~~a~~l~ 268 (502)
T TIGR01695 235 GSSASQITLLINTALASFLEIGSVS--ALYYANRIY 268 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchHH--HHHHHHHHH
Confidence 9999998888888888888988777 777776654
No 18
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.86 E-value=1e-18 Score=163.66 Aligned_cols=202 Identities=17% Similarity=0.173 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----C---hH---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL----G---QL---ALSST-AMAISLASVTGFSVLLGMASALETLC 100 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~----g---~~---~~a~~-~i~~~l~~~~~~~~~~~i~~a~~~~~ 100 (307)
++.+|++++++.|..++++...+...+|+.++++. | .+ ..+.| +++.++.+++ ..+..+++.+..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999874 2 11 22333 3566777777 778899999999999
Q ss_pred HHhhccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021824 101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQ 179 (307)
Q Consensus 101 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~ 179 (307)
+|++|+||+++.++..+++..+...++++.+ .+..++++++.++.+++ .+.+++++++++.++..+.....+.++
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 56888999998887544 367789999999999999999999999
Q ss_pred HcCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 180 ~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
+.||++..++.++.+.++|+++++.++..|.+|+.|+++|+.+++.+..++..++.+|.
T Consensus 376 ~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 376 GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998744569999999999999999998887777553
No 19
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.85 E-value=5.5e-18 Score=155.40 Aligned_cols=247 Identities=14% Similarity=0.119 Sum_probs=212.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021824 25 STTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY 104 (307)
Q Consensus 25 ~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~ 104 (307)
+++|+...+..|++.+...|..++....++...+|+.+.+.+.+.+.+.++.++++.+++.-.+..++++...|..||+.
T Consensus 221 ~p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~ 300 (518)
T COG0728 221 KPRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA 300 (518)
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 44454434789999999999999999999999999999999999999999999999999977999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC----ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021824 105 GAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQ 179 (307)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~ 179 (307)
.++|.++.++..++++.++.++++|.. .++.++++++..+.. +++....+.+.+..+.+++++..+..++...+.
T Consensus 301 ~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FY 380 (518)
T COG0728 301 ANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFY 380 (518)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 679999999987732 456677888999999999999999999999999
Q ss_pred HcCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHH
Q 021824 180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEF 259 (307)
Q Consensus 180 ~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (307)
+++|+|.|+...+++.++|+.+++.+. +.+|..|.++++.++.++++.++++..+|+... .+.+.|.... .
T Consensus 381 Ar~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~------~~~~~~~~~~-~ 451 (518)
T COG0728 381 AREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVY------LPGRGWGLFL-I 451 (518)
T ss_pred HccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC------CccchhhHHH-H
Confidence 999999999999999999999998877 448999999999999999998887777665321 1134445444 6
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 021824 260 FHFAIPSAVMICLEWWSFELL 280 (307)
Q Consensus 260 ~~~~~p~~~~~~~~~~~~~~~ 280 (307)
.|..+..+++....+......
T Consensus 452 ~k~~l~~~i~~~~~~~~~~~~ 472 (518)
T COG0728 452 LKLLLASAIMAAALLALLHLA 472 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766655444444
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.84 E-value=2.3e-18 Score=161.19 Aligned_cols=244 Identities=13% Similarity=0.111 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHH
Q 021824 39 GYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY 117 (307)
Q Consensus 39 l~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~ 117 (307)
.|-+.|.+++++...+.+.+|+.++++ +|+++.|+++.+..+..++......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 466899999999999999999999999 5999999999999998887333446899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 021824 118 TAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALC 196 (307)
Q Consensus 118 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~ 196 (307)
++..+.++.+++.. +++.+.+++...+.+|++. ..+++++.+..++..+.....+++|+.+|.+..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 99999999999888 5577788887777666543 356888899999999999999999999999999999999999
Q ss_pred hhhhhHhHhhh-----ccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCCHHHHhcHHHHHHHHhHHHHH
Q 021824 197 LHIPICWSLVY-----KSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAIPSAVM 269 (307)
Q Consensus 197 ~~i~l~~~li~-----~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 269 (307)
++++++..++. ..++|+.|+++++.+++.+..++..++++++++.+ ..+.+..+.+++..|++++.++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 88877655542 23467888999999999999888776665443311 111112234456788999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 021824 270 ICLEWWSFELLILMSGL 286 (307)
Q Consensus 270 ~~~~~~~~~~~~~~~~~ 286 (307)
++.......+.+.++++
T Consensus 238 ~~~~~~~~~~d~~ii~~ 254 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQ 254 (488)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888877776654
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=99.84 E-value=1.7e-18 Score=158.92 Aligned_cols=257 Identities=12% Similarity=0.001 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHH
Q 021824 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQT 116 (307)
Q Consensus 38 il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~ 116 (307)
+.|-+.....+.+...+.+++...++.+ +|+++.|.++....+..++......|++++....++|+ ++|+|+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 4455666777888888888888888888 49999999999999888774444888888888889988 67888999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 021824 117 YTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL 195 (307)
Q Consensus 117 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~ 195 (307)
..++.+.++.+++++ +.+++.+++...+..+++ . ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 568888999887776664 2 34566666666677888899999999999999999999999
Q ss_pred HhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHH
Q 021824 196 CLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWW 275 (307)
Q Consensus 196 ~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 275 (307)
++|+++ +++... ..|+.|+++|+.+++.+..++..+++++++..+..+.+ .+.+++..|++++.|+|...++.....
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444433 14999999999999999888777666554321111111 123456678999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhhhhHHHHHHhhhcc
Q 021824 276 SFELLILMSG-LLPNPQLETSVLSVWYVDID 305 (307)
Q Consensus 276 ~~~~~~~~~~-~~g~~~~a~~~~~i~~~i~~ 305 (307)
.....+.+++ .+|+.+++ .|++..++..
T Consensus 234 ~~~~~~~~l~~~~g~~~vg--~y~~a~~i~~ 262 (416)
T PRK15099 234 AYVMMRNLLAAHYSWDEVG--IWQGVSSISD 262 (416)
T ss_pred HHHHHHHHHHhcCCHHHhh--HHHHHHHHHH
Confidence 9998888885 99998877 8998888743
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.83 E-value=2.5e-21 Score=154.47 Aligned_cols=160 Identities=23% Similarity=0.387 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHH
Q 021824 44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL 123 (307)
Q Consensus 44 p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 123 (307)
|.+++++...+...+|+.+++++|++++++++++.++.++. ..+..|++++..+.+||++|++|+|++++..+.+..+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-Hhhhhh
Q 021824 124 FLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL-CLHIPI 201 (307)
Q Consensus 124 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~l 201 (307)
++++++.. +.+++.+++..+++.|+|+.+.+.+|+++..++.|+..+.....+++++.||++..++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 99999999 5588999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred HhH
Q 021824 202 CWS 204 (307)
Q Consensus 202 ~~~ 204 (307)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.82 E-value=7.1e-18 Score=154.87 Aligned_cols=201 Identities=10% Similarity=0.044 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh
Q 021824 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVG-HLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (307)
Q Consensus 31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~-~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~ 109 (307)
.++.+|+++++|.|..++++...+....|+.+++ .+|++++|.|+.+.++.+.+...+..+++++..|.++++ +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 3678899999999999999999999999999997 579999999999999977544788999999999999995 567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824 110 QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (307)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~ 188 (307)
++.++..++.......++.+.+ .+++++++++.++.+|+ .+.+.+++++++++.++...+..+.......++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999888888 55799999999987654 34578899999999998888887777777888999999
Q ss_pred HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
...+...++++++++++++. +|..|+++++.+++.+......+...++
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888899999999999944 9999999999999999998877655443
No 24
>PRK10459 colanic acid exporter; Provisional
Probab=99.79 E-value=1.4e-16 Score=149.53 Aligned_cols=200 Identities=15% Similarity=0.114 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~ 110 (307)
++..|++++++.|...+++...+...+|+.++|.+ |++++|.|+.+.++.+++...+...++....|..++. ++|.+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 57789999999999999999999999999999995 9999999999999998874566666888899999886 56778
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824 111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (307)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~ 189 (307)
+.++.+++.......+++|+. .+...+++++.++.+++ ...+...+++++++..+..+.......+++.||++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 899999999999999999988 66888999998876544 466889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 021824 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (307)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~ 237 (307)
.+++..+++++..+.+... +|..|+++|+.+++.+...+..++.+|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888744 899999999999999988887776644
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.75 E-value=1.4e-15 Score=142.30 Aligned_cols=199 Identities=16% Similarity=0.176 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh
Q 021824 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (307)
Q Consensus 31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~ 109 (307)
.++.+|++++.++|..++.+...+.+.+|+.+++.+ |++++|.|+.++++.... ..+..+++.+..|..++.+.++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 378999999999999999999999999999999995 999999999999999887 999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824 110 QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (307)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~ 188 (307)
++.++..+++......+++|.. .+..++++++..+.+++. ..+...+++++++.++..+.......+++.|+++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 9999999999999999999999 668899999988766543 2378889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHH
Q 021824 189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYM 235 (307)
Q Consensus 189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~ 235 (307)
..+.++.++|++++++++ +.+|..|++.++ .+.........+..
T Consensus 365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~~~~~~~~~~~~~ 408 (480)
T COG2244 365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-ASVIALALLLFYIL 408 (480)
T ss_pred HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999 559999999999 44333333333333
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.68 E-value=8.7e-14 Score=128.77 Aligned_cols=231 Identities=12% Similarity=0.082 Sum_probs=188.4
Q ss_pred hChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 021824 66 LGQL-ALSSTAMAISLASVTGFSVL-LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLV 142 (307)
Q Consensus 66 ~g~~-~~a~~~i~~~l~~~~~~~~~-~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 142 (307)
+|.+ +..+|.++.++.+++...+. .+++++..|...+.. ++++|+.++..+.......++.+.++ +.++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5766 67899999999998844454 468999999999999 88889999999988888888888877 55889999999
Q ss_pred Hh--CCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhHhHhhhccCCc---cchhH
Q 021824 143 LI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG---NLGGA 217 (307)
Q Consensus 143 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G---~~Ga~ 217 (307)
++ +.|++..+.+.+.++++++..++..+..++.+++|+.+|...+....+...+..++..+++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 88 44778899999999999999999999999999999999999998888887777666555554 3366 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHH
Q 021824 218 LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVL 297 (307)
Q Consensus 218 ~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~ 297 (307)
+|..++.+++.++.....+|...+.+...++ ..+..|++.+...|..+..........+...+++.++++.++ +.
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs--~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW---RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVS--AL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH--HH
Confidence 9999999999999888877665432221111 124467999999999999989888888888999999999887 66
Q ss_pred HHHhhhc
Q 021824 298 SVWYVDI 304 (307)
Q Consensus 298 ~i~~~i~ 304 (307)
+...++.
T Consensus 237 ~YA~~l~ 243 (451)
T PF03023_consen 237 NYAQRLY 243 (451)
T ss_pred HHHHHHH
Confidence 6555543
No 27
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.58 E-value=1.3e-13 Score=123.29 Aligned_cols=130 Identities=22% Similarity=0.330 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (307)
Q Consensus 31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~ 110 (307)
.++.+|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++++..|.+++++++||.+
T Consensus 211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 289 (342)
T TIGR00797 211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDPK 289 (342)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 377899999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q 021824 111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWL 161 (307)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~ 161 (307)
+.++..+++....+.++++.. +++++++++..++.+|+++.+.+..++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 290 RAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988 668899999999999999999999988875
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.55 E-value=3.1e-11 Score=111.25 Aligned_cols=263 Identities=13% Similarity=0.043 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChH-HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhccchhhhH
Q 021824 36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQL-ALSSTAMAISLASVTGFSVLLG-MASALETLCGQAYGAQQYQRI 112 (307)
Q Consensus 36 ~~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~-~~a~~~i~~~l~~~~~~~~~~~-i~~a~~~~~s~~~g~~~~~~~ 112 (307)
++++|.++-....++...+.+++-..+++. +|.+ ..++|.++.++.+++--.+..| ++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 455566666666677777788886666666 5885 6789999999999985555544 589999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-CC--ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824 113 GTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLI-GQ--DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (307)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~ 188 (307)
++.......+...+.+..+ +..++++++++.. .. |++....+....+++.+..++..+.....+.+++.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 8888877766666666666 4577888888454 33 344444688889999999999999999999999999999998
Q ss_pred HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHH
Q 021824 189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAV 268 (307)
Q Consensus 189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 268 (307)
+..+.-++.-+...+++....+....+.++++.++-+.+.++....++|.....+....++ -+..|++.+...|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHHH
Confidence 8887777777755555554322236688899999999999999999988753322222221 1567799999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhh
Q 021824 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVWYVD 303 (307)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i 303 (307)
..........+.+.+++.+.++.++ .+....++
T Consensus 244 ~~sisQi~lli~~~iAS~l~~Gsis--~l~YA~rl 276 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAEGSVS--WLYYADRL 276 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHH--HHHHHHHH
Confidence 9999999999999999999998877 55555544
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.44 E-value=5.8e-10 Score=95.96 Aligned_cols=249 Identities=15% Similarity=0.182 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHH
Q 021824 39 GYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY 117 (307)
Q Consensus 39 l~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~ 117 (307)
+|-+.-...+++...+.+.+-..++.+ +|+++.|.++....+.+++......|++++.....++...+ .++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455666777888888888888888888 59999999999999998874455888999998888877543 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 021824 118 TAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCL 197 (307)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~ 197 (307)
......++.+++....... ...+.. ++. ...+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI----ASFFGN-PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333322222 123333 322 12222222222257788889999999999999999999999888
Q ss_pred hhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHH
Q 021824 198 HIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSF 277 (307)
Q Consensus 198 ~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 277 (307)
..++...+... ..+..+..++..++..+..++..++.+|+.+ .++...+++..+++.+.+.|.....+......
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666644 2348888899999998888887777765532 11122235777899999999999999999998
Q ss_pred HHHHHHHhcC-CchhhhhHHHHHHhhhcc
Q 021824 278 ELLILMSGLL-PNPQLETSVLSVWYVDID 305 (307)
Q Consensus 278 ~~~~~~~~~~-g~~~~a~~~~~i~~~i~~ 305 (307)
.....+++.+ |+.+++ -|++..++..
T Consensus 226 ~~d~~ii~~~~g~~~vg--~Y~~a~~l~~ 252 (273)
T PF01943_consen 226 QIDRLIIGYFLGPEAVG--IYSVAYRLAS 252 (273)
T ss_pred HhHHHHHHHhCCHHHHH--HHHHHHHHHH
Confidence 8888877776 666766 7887777654
No 30
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.44 E-value=6e-13 Score=122.81 Aligned_cols=211 Identities=14% Similarity=0.087 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccch
Q 021824 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ--LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ 108 (307)
Q Consensus 31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~--~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~ 108 (307)
.++.+++++++++|..+...++.-...+-....|.+++ .++++.++........ +.+..+++.+.++.+++.+|++|
T Consensus 242 ~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~ 320 (473)
T KOG1347|consen 242 EFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGK 320 (473)
T ss_pred hhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCC
Confidence 37889999999999999999999999999999999864 6899999999999887 88888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 021824 109 YQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~ 187 (307)
.+++|.....+...++.++.... .++...+.+...|..|+|+.+...+..+++++..++++.+.+..+..+|.|..+..
T Consensus 321 p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~g 400 (473)
T KOG1347|consen 321 PKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIG 400 (473)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccce
Confidence 99999999999999999998888 66888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 021824 188 FLSSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA 242 (307)
Q Consensus 188 ~~~~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~ 242 (307)
.+.++.+ .++.++....+.+..++|..|.|++...+...+...+.....+.+|.+
T Consensus 401 a~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~ 456 (473)
T KOG1347|consen 401 AVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKN 456 (473)
T ss_pred EEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHH
Confidence 9999988 888899888888778899999999999997777777777766666653
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.33 E-value=1.2e-09 Score=102.56 Aligned_cols=246 Identities=10% Similarity=0.054 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHH
Q 021824 36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGT 114 (307)
Q Consensus 36 ~~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~ 114 (307)
++..+-+....++++...+.+++....+.+ +|+++.|.++.+..+..++......|++++.. |.. ++++ +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~~-~~~~----~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QRQ-DISH----L 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hcc-cCCH----H
Confidence 455666777888888888899998888888 49999999999999998874455566766552 221 1222 2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Q 021824 115 QTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCA 193 (307)
Q Consensus 115 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~ 193 (307)
.......+....+++.. +.+.+++++..++ ++++ ....+++..+..++..+.....+.++...+.+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 33444555666666655 3455566665554 4444 3346778888888888888899999999999988888888
Q ss_pred HHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHH
Q 021824 194 ALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273 (307)
Q Consensus 194 ~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 273 (307)
..++..++...+.. .++|+.+..++..++..+..++..... +++++. ++ ..+++..|++++.+.|........
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~----~~-~~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRP----AL-HFSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCc----cc-eecHHHHHHHHhhhHHHHHHHHHH
Confidence 87777766655543 358899999999999888776543322 222211 11 122455689999999999999888
Q ss_pred HHHHHHHHHHHhcC-CchhhhhHHHHHHhhhc
Q 021824 274 WWSFELLILMSGLL-PNPQLETSVLSVWYVDI 304 (307)
Q Consensus 274 ~~~~~~~~~~~~~~-g~~~~a~~~~~i~~~i~ 304 (307)
.........+++.+ |+.+++ .|+...++.
T Consensus 224 ~~~~~~d~~~lg~~lg~~~vG--~Y~~A~~l~ 253 (492)
T PRK10459 224 YLNTNIDTILIGRILGAEVLG--GYNLAYNVA 253 (492)
T ss_pred HHHhcCchhhhhHhhchHhhh--hHHHHHHHH
Confidence 88888888876665 777766 666665553
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.22 E-value=5.2e-08 Score=82.86 Aligned_cols=226 Identities=19% Similarity=0.238 Sum_probs=150.3
Q ss_pred HHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021824 55 LQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL 133 (307)
Q Consensus 55 ~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (307)
.+++-..++++ +|+++.|.|+....+..+.......|+.+.... . .++++++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777 599999999999999988733334555555433 2 23455566666666655544444433322
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhHhHhhhccCCcc
Q 021824 134 WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGN 213 (307)
Q Consensus 134 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~ 213 (307)
...+..++ .+++ ...++....+..++..+....++.+++.+|.+..........+....+...+... +.+.
T Consensus 78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 11222233 3332 3345667778888899999999999999999999999999987775444444432 2377
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchhh
Q 021824 214 LGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNPQL 292 (307)
Q Consensus 214 ~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 292 (307)
.+..++..++..+..++.....+++ . ..+. +.+. ++..+.+.|.....+..+........+++. +|+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK--L---RLSF---KFSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--c---CCCc---hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 8888888888887776655422211 1 1111 1122 247899999999999999999998888888 888887
Q ss_pred hhHHHHHHhhhcc
Q 021824 293 ETSVLSVWYVDID 305 (307)
Q Consensus 293 a~~~~~i~~~i~~ 305 (307)
+ .+++..++..
T Consensus 220 g--~y~~a~~l~~ 230 (251)
T PF13440_consen 220 G--IYSVAQRLAS 230 (251)
T ss_pred H--HHHHHHHHHH
Confidence 7 7777766543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.08 E-value=3.3e-08 Score=92.58 Aligned_cols=248 Identities=16% Similarity=0.173 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 33 GEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 33 ~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
...+++.|-+.-...+++...+...+....+++ +|+++.|.++.+..+..++......|+..+....++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 345677778888888899999999999898988 5999999999999999998555568999999999999887776666
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 112 IGTQ-TYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
.+.. ...........+.+.........+. ++ .....+++..++.+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 6655 5555555555444444333323222 22 24445778899999999999999999999999999887
Q ss_pred HHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHH-hccccccccCCCCHHHHhcHHHHHHHHhHHHHH
Q 021824 191 SCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMK-FSTACAESRVPISMELFQGIGEFFHFAIPSAVM 269 (307)
Q Consensus 191 ~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 269 (307)
.+.. ..-+...+.+.. ....+..++...+.........++.. ++++..+. ..+..++..++.++.++|....
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRP---ILRFSLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---ccCchhHHHHHHHHHhhHHHHH
Confidence 4444 222222222221 34555666666666666655555543 22211111 1122467788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-CchhhhhHHHHH
Q 021824 270 ICLEWWSFELLILMSGLL-PNPQLETSVLSV 299 (307)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~i 299 (307)
...........+.+.+.+ |+.+++ -|+.
T Consensus 226 ~~~~~l~~~~D~~~i~~~l~~~~vG--~Y~~ 254 (480)
T COG2244 226 SLLNFLFTNIDTLLLGLFLGPAQVG--IYSA 254 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhe--eccc
Confidence 999999998888877655 666655 4443
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.94 E-value=4.6e-06 Score=71.42 Aligned_cols=254 Identities=13% Similarity=-0.002 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccch
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ---LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ 108 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~---~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~ 108 (307)
....+++.++-+|..++++...+.-.+.+.-+++-.+ +.+|+|+++..+.-++ ..+...+-+....++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cch
Confidence 3557889999999999999999999998888876433 3499999999999887 777777766665554 332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchh
Q 021824 109 YQRIGTQTYTAIFCLFLVCFPLSFL--WIYAGKLL-VLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII 185 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~ 185 (307)
+++.+ .+......+.+.......+ --+...++ ..++.++++.+.+...+.++.+..++.++...+++++.-.+++.
T Consensus 81 rsrr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 22211 2222222222222221211 22333444 45578999999999999999999999999999999888667777
Q ss_pred HHHHHHHHHHHhhhhhHhHhhhc---cCCccchhHHHHHHHHHHHH-HHHHHHHHhccccccccCCCCHHHHhcHHHHHH
Q 021824 186 PMFLSSCAALCLHIPICWSLVYK---SGLGNLGGALAIGISNWLNV-TFLAIYMKFSTACAESRVPISMELFQGIGEFFH 261 (307)
Q Consensus 186 ~~~~~~~~~~~~~i~l~~~li~~---~~~G~~Ga~~a~~is~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (307)
.....++...+..+++...+... +.-+..--..+...+..+.+ .+.+.|++..+...+...+....+....+++.+
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 77777777666666665555532 21222222233333333332 222333333333323222233444577889999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhc-CCchhh
Q 021824 262 FAIPSAVMICLEWWSFELLILMSGL-LPNPQL 292 (307)
Q Consensus 262 ~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 292 (307)
+.+|.+........+=-+.+.+.++ +|.++-
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a 271 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQA 271 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 9999999999999999999999999 665543
No 35
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.91 E-value=8.7e-08 Score=74.74 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=73.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 021824 158 MIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (307)
Q Consensus 158 l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~ 237 (307)
+++++++.++..+....++.+++.||++..+..+..+.++|++++++++ |.+|..|+++|+.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999998 55999999999999999999888877766
Q ss_pred c
Q 021824 238 S 238 (307)
Q Consensus 238 ~ 238 (307)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.83 E-value=1.2e-06 Score=82.43 Aligned_cols=203 Identities=11% Similarity=0.037 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh---
Q 021824 36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGH--L-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY--- 109 (307)
Q Consensus 36 ~~il~~~~p~~i~~~~~~l~~~i~~~~i~~--~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~--- 109 (307)
++.+++......+.+.-.+.+--|+.++.. + ..++.|.|++++++-+++.=.+...+....-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 677888889999999999999999999988 5 6679999999999999887888999999999999988754432
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 021824 110 ------QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS 182 (307)
Q Consensus 110 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g 182 (307)
++..+.....+++...+++++. ..-..++.++.+++++......+...+++++..+|+.+++++.-.+.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 4466677777777777777766 446777788888766555555678889999999999999999999999887
Q ss_pred chhHHHHHH---HHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 021824 183 LIIPMFLSS---CAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 239 (307)
Q Consensus 183 ~~~~~~~~~---~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~ 239 (307)
+.+.....+ ....++.+..++.+... ++|..|..+|.++......+....++++..
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~ 471 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYF 471 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444433 34455566778888865 799999999999999999999888886653
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=4e-06 Score=74.89 Aligned_cols=202 Identities=9% Similarity=0.002 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHH
Q 021824 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGHL---GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGT 114 (307)
Q Consensus 38 il~~~~p~~i~~~~~~l~~~i~~~~i~~~---g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~ 114 (307)
..+...-..-+.+.-++.+--|..++... +-.+.|.|.+.++.-++..=.+...+....-...+|....++.|+.++
T Consensus 241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~ 320 (530)
T KOG2864|consen 241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence 33344444455666777777777777642 445778888888887777677888899988888888887776666555
Q ss_pred ---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH--
Q 021824 115 ---QTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF-- 188 (307)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~-- 188 (307)
.....+.+...+++... .....++..+.+++++......+...+++++..+|+.+++.+.-++..+.++.+..-
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~ 400 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH 400 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence 44555555556665544 335566777787776544444556789999999999999999999999876554433
Q ss_pred -HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccc
Q 021824 189 -LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC 241 (307)
Q Consensus 189 -~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~ 241 (307)
....+..++.++++|+++.. +|..|..+|.++...+.-+...+++++..+.
T Consensus 401 n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~ 452 (530)
T KOG2864|consen 401 NKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRD 452 (530)
T ss_pred ccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23445567777889999966 8889999999999998888877777655443
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.88 E-value=0.00014 Score=62.25 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY 104 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~ 104 (307)
++..|++++.+.|..++.+...+....|+.+++++ |++++|.|+.+.++...+ ..+...+.+...|.++|.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999999996 999999999999999998 8899999999999998853
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.08 E-value=0.0061 Score=51.51 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHh
Q 021824 37 KQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGF-SVLLGMASALETLCGQA 103 (307)
Q Consensus 37 ~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~-~~~~~i~~a~~~~~s~~ 103 (307)
+.++.+.|..++.+........|..+++. +|++++|.|+.+.++.+.+ . .+..++++...|.++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~-~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLP-ASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999 7999999999999999987 6 89999999999998873
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=93.46 E-value=5.6 Score=35.78 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMM-MVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~-~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~ 109 (307)
+...........|-.++-....+.+.+..- .+.. ..+.-++......... .++..|++...+..+|...=+||.
T Consensus 22 rA~~Ys~iVs~gPwll~i~~i~~i~iis~~~~v~~~~~~~Flssv~Y~~ifS----~IiTgg~q~iiTRfiSD~lF~k~~ 97 (467)
T COG4267 22 RAYFYSGIVSVGPWLLSIVSIILIGIISSQIVVPRVLSPQFLSSVTYCFIFS----QIITGGFQLIITRFISDCLFEKKQ 97 (467)
T ss_pred HHHHHhHhheecchHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444455555555655544444433333221 1111 1222233333222222 445677777777888888777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824 110 QRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (307)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~ 189 (307)
+++.....-...++...+..+.. ++....++... .|=...+......+..=....++.+.+|.+....
T Consensus 98 ~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si-----~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~ 165 (467)
T COG4267 98 RKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSI-----VYKILACALFVGMSLVWILMIFLSGLKKYKLIVL 165 (467)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665555444444433331 11111222211 1111223333444555566778889999999999
Q ss_pred HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 021824 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 239 (307)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~ 239 (307)
.-.++.++..++..++- +++..|.-++..++.+........++.|.-
T Consensus 166 sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~f 212 (467)
T COG4267 166 SFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYF 212 (467)
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 99999999998887774 358999999999999999888888776653
No 41
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=89.43 E-value=21 Score=34.32 Aligned_cols=263 Identities=13% Similarity=-0.012 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhChHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHH
Q 021824 42 AAPMVAVTLSQYLLQVVSMMMV-GHLGQLALSSTAM-AISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTA 119 (307)
Q Consensus 42 ~~p~~i~~~~~~l~~~i~~~~i-~~~g~~~~a~~~i-~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~ 119 (307)
+.-.++.+++..+.+++-+.++ -+.+++.+|..++ ..-+.+-+.+.-=-++-.|....-.+...++|.++..+..+.+
T Consensus 7 as~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~wls 86 (549)
T PF04506_consen 7 ASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLWLS 86 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccccc
Confidence 3445566666666666655554 4469988877633 2222222223334455555554333322222333444444444
Q ss_pred HHHHHHHHHHHHHHHH--H--HHHH--HHHhCC-Chh---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc----Cchh
Q 021824 120 IFCLFLVCFPLSFLWI--Y--AGKL--LVLIGQ-DPQ---ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ----SLII 185 (307)
Q Consensus 120 ~~~~~~~~~~~~~~~~--~--~~~i--~~~~~~-~~~---~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~----g~~~ 185 (307)
..+..++.+++..+.+ . +..+ ..+... .++ ..+.....+.+...+.....+...+-...|.. -+.+
T Consensus 87 ~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~Rv~ 166 (549)
T PF04506_consen 87 VPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLRVK 166 (549)
T ss_pred CcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhheeeE
Confidence 4444444443332211 0 1111 111111 111 11223334455555555555555543333333 3444
Q ss_pred HHHHHHHHHHHhhhhhHhHhhhc-cCCcc-----ch-hHHHHHHHHHHHHHHHHHHH-Hhcccccccc----CCCCH---
Q 021824 186 PMFLSSCAALCLHIPICWSLVYK-SGLGN-----LG-GALAIGISNWLNVTFLAIYM-KFSTACAESR----VPISM--- 250 (307)
Q Consensus 186 ~~~~~~~~~~~~~i~l~~~li~~-~~~G~-----~G-a~~a~~is~~~~~~~~~~~~-~~~~~~~~~~----~~~~~--- 250 (307)
.-........+.+..+..+.... .+++. .+ +.++...+++...+...... .......+.+ .+...
T Consensus 167 ~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~~~ 246 (549)
T PF04506_consen 167 AESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSGNP 246 (549)
T ss_pred echHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccccc
Confidence 44444444444444443333211 11111 11 23555566655543332211 1111110111 11111
Q ss_pred HHHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---CCchhhhhHHHHHHhhhccc
Q 021824 251 ELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL---LPNPQLETSVLSVWYVDIDC 306 (307)
Q Consensus 251 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~g~~~~a~~~~~i~~~i~~~ 306 (307)
+...--++..+.......+++.-..--+--..++.. ....+.+ .|++..|..++
T Consensus 247 ~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QG--vY~lv~N~GSL 303 (549)
T PF04506_consen 247 KSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQG--VYALVSNYGSL 303 (549)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhh--HHHHHhhHHHH
Confidence 111123567777777777777666666655555555 3444555 78888888775
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=81.40 E-value=42 Score=30.47 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824 110 QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (307)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~ 188 (307)
+++....++.+.-..-+-...+ .+++.++.+..+++-++ .-.+.+++-.++.-+......+-...-=.++.+..+
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444455555555555555556 45788899999987543 222333333443333322222222222346667777
Q ss_pred HHHHHHHHhhhhhHhHhhhc-cCCccchhHHHHHHHHHH
Q 021824 189 LSSCAALCLHIPICWSLVYK-SGLGNLGGALAIGISNWL 226 (307)
Q Consensus 189 ~~~~~~~~~~i~l~~~li~~-~~~G~~Ga~~a~~is~~~ 226 (307)
..+..-.+.|-++++++... |++--.|..+|..++-.+
T Consensus 396 ~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv 434 (467)
T COG4267 396 ELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLV 434 (467)
T ss_pred hhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHH
Confidence 77777788898898887642 443333444444444333
No 43
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=68.61 E-value=32 Score=28.56 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=35.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHHHHHH
Q 021824 106 AQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDP---------QISHEVGKFMIWLLPALFAYA 169 (307)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~~ 169 (307)
-++++...+.+..++...+++-+++++++.+..++..+++.|. +..+....|+++++.++|...
T Consensus 140 ~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 140 HEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 3455555566666665555555555556666667776665321 112334556666666665554
No 44
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=66.89 E-value=1.2e+02 Score=28.78 Aligned_cols=35 Identities=3% Similarity=-0.013 Sum_probs=26.0
Q ss_pred HcCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchh
Q 021824 180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGG 216 (307)
Q Consensus 180 ~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga 216 (307)
-.-++..........++.|.+..+.+.+. ....|.
T Consensus 399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l--~~~~g~ 433 (485)
T KOG0569|consen 399 QSARSAAQSVATAVNWLSNFIVGFAFPPL--QNVIGP 433 (485)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcc
Confidence 34567777777788899999888887754 667776
No 45
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=65.59 E-value=1.1e+02 Score=27.93 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 021824 108 QYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLV 142 (307)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 142 (307)
++++.+++.+.+...+.+...... ++....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999888877 55666666665
No 46
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=52.84 E-value=1.9e+02 Score=26.65 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=23.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021824 25 STTWGVLSGEVKKQGYIAAPMVAVTLSQYLL 55 (307)
Q Consensus 25 ~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~ 55 (307)
+..+++..+..|+++.+.+|..+..+++.+.
T Consensus 232 ~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~I 262 (402)
T PF02487_consen 232 KLSFKEKLKRLKPLLWYMIPLFLVYFAEYFI 262 (402)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555677888888999999888888765
No 47
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=44.16 E-value=3e+02 Score=26.43 Aligned_cols=106 Identities=16% Similarity=0.086 Sum_probs=59.7
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH------HHH-----hhh-ChHHHHHHH
Q 021824 21 LSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVV-------------SM------MMV-----GHL-GQLALSSTA 75 (307)
Q Consensus 21 ~~~~~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i-------------~~------~~i-----~~~-g~~~~a~~~ 75 (307)
+++++-+| |+..+.++.+..-.++-.......+-. |. .|+ .+| |++.++.++
T Consensus 48 d~~~em~W---k~Ya~alL~fN~~~~l~~~~ll~~Q~~LPlNP~~~~~~s~dlAfNTAiSFvTNTNwQ~YsGEstlSyls 124 (552)
T PF03814_consen 48 DPEEEMSW---KQYALALLAFNLIGFLLLYLLLRLQGWLPLNPQGFPGMSPDLAFNTAISFVTNTNWQHYSGESTLSYLS 124 (552)
T ss_pred CCcCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCCCCCcchhhhhhhhhhccCcccccCCcchHHHHH
Confidence 34567788 666677766665554443333322221 11 122 234 666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHH
Q 021824 76 MAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS 131 (307)
Q Consensus 76 i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (307)
...-+.. .+.+..+.+.+....+-|.+.+++.+++...+....+..+-+-+|++
T Consensus 125 Qm~gLtv--qnFvSAAtGiAv~~AliRg~~~~~~~~iGNFwvDl~R~~l~vLLPlS 178 (552)
T PF03814_consen 125 QMAGLTV--QNFVSAATGIAVAIALIRGFARKETKTIGNFWVDLVRSTLRVLLPLS 178 (552)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHH
Confidence 6555543 24555666666666667777666656666666666666655555555
No 48
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=39.47 E-value=1e+02 Score=20.51 Aligned_cols=34 Identities=9% Similarity=-0.094 Sum_probs=19.5
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021824 24 SSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQV 57 (307)
Q Consensus 24 ~~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~ 57 (307)
+...|+..++.+|+=++-+.+...-.........
T Consensus 41 ~~~~~~~f~~~fk~nf~~~~~~~~~~~~~~~il~ 74 (77)
T PF04854_consen 41 DSYLFRDFWRAFKQNFKQSLLLGLILLLLLAILY 74 (77)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665554544444433
No 49
>PF14184 YrvL: Regulatory protein YrvL
Probab=35.58 E-value=2e+02 Score=21.87 Aligned_cols=98 Identities=11% Similarity=0.152 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhh
Q 021824 121 FCLFLVCFPLSFLWIYAGKLLVLIGQDPQ-ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHI 199 (307)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i 199 (307)
...+.+.++.+..++...-++.++|.+-| .....--.+....++.|+..+..++...+.-.+-++... ......+..
T Consensus 9 ~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~~id~ 86 (132)
T PF14184_consen 9 IIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAFIIDF 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHHHHHH
Confidence 33444444444556666677788775433 233333445556677888888877777666553333322 344466777
Q ss_pred hhHhHhhhccCCccchhHHHH
Q 021824 200 PICWSLVYKSGLGNLGGALAI 220 (307)
Q Consensus 200 ~l~~~li~~~~~G~~Ga~~a~ 220 (307)
..+++.++.-|.=+.++.+.+
T Consensus 87 ~~t~~~i~~aD~~m~sI~is~ 107 (132)
T PF14184_consen 87 LFTWITIYTADELMESISIST 107 (132)
T ss_pred HHHHHHHHHHHHHhcceeeCc
Confidence 777777765444344554443
No 50
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=35.20 E-value=2e+02 Score=23.15 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 213 NLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 213 ~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
+.|...+..+++++.+++...|..+.
T Consensus 136 ~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 136 VSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhHhHHHHHHHHHHHHHHHHHheeec
Confidence 44667778888888887777666544
No 51
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.04 E-value=1.7e+02 Score=20.47 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 021824 109 YQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMI 159 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 159 (307)
.+.+-+..+.++...+.++.|..+..+...-++.+|..-.+..|.+-.+++
T Consensus 3 ~~~~l~i~~~ai~~~L~l~~P~ll~alvvGLvIsifQA~TQIqEqTLsFiP 53 (89)
T COG1987 3 EEDVLDIGQEAIWLVLMLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIP 53 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456677888888888888888776655566666666544455555555544
No 52
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=31.89 E-value=3.8e+02 Score=24.03 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=20.2
Q ss_pred Cc-cchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 211 LG-NLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 211 ~G-~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
+| -.|++++++++-.+....+..+.+--
T Consensus 301 fG~~s~aA~a~vigpLvEVpvml~lV~v~ 329 (342)
T COG0798 301 FGLTSGAALATVVGPLVEVPVMLGLVKVA 329 (342)
T ss_pred cCccccchhhhhccchhhHHHHHHHHHHH
Confidence 55 66889999998888777666555433
No 53
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=31.87 E-value=1.3e+02 Score=27.04 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc--ccccCCCCHHHHhcHHHHHHHHhHHHH
Q 021824 219 AIGISNWLNVTFLAIYMKFSTAC--AESRVPISMELFQGIGEFFHFAIPSAV 268 (307)
Q Consensus 219 a~~is~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~ 268 (307)
+..++|++-.++....+.++.++ ++...+...+-+...++..|.++|+.+
T Consensus 50 ~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~i 101 (345)
T KOG2234|consen 50 AVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALI 101 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHH
Confidence 44566666666655554444322 233344556666777799999999875
No 54
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.25 E-value=2.2e+02 Score=25.16 Aligned_cols=18 Identities=17% Similarity=-0.073 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhccc
Q 021824 223 SNWLNVTFLAIYMKFSTA 240 (307)
Q Consensus 223 s~~~~~~~~~~~~~~~~~ 240 (307)
-.++.++..+++++|++|
T Consensus 306 im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 306 LLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 334444455566666654
No 55
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=29.15 E-value=5.2e+02 Score=24.74 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=10.6
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 021824 156 KFMIWLLPALFAYATMQPLI 175 (307)
Q Consensus 156 ~~l~i~~~~~~~~~i~~~~~ 175 (307)
-...+...+.|+..+...+.
T Consensus 372 l~~lw~~v~~PL~~lG~~~g 391 (521)
T PF02990_consen 372 LIALWFFVSIPLTFLGGYFG 391 (521)
T ss_pred HHHHHHHHhhhhhhcchhhh
Confidence 34445555566665555544
No 56
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=29.10 E-value=2.4e+02 Score=25.17 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-Ch----HHHHHHHHHHHHH
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-L-GQ----LALSSTAMAISLA 81 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~-g~----~~~a~~~i~~~l~ 81 (307)
....++++++.+|.+.....+.+..-+.+.++++ + |. ++++......+.-
T Consensus 231 ~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvg 286 (345)
T PF07260_consen 231 SATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVG 286 (345)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCC
Confidence 4568999999999999999999999999999998 5 33 3444444444433
No 57
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=28.33 E-value=2.1e+02 Score=20.01 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 021824 108 QYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFM 158 (307)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 158 (307)
+.+.+-+..++++...+.++.|..+......-++.++..-.++.|.+-.+.
T Consensus 2 ~~~~~~~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~TQIqEqTLsFv 52 (88)
T PRK06010 2 NEADALDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQIQEMTLTFV 52 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 346667788888888888888877665556666666643344455554443
No 58
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.12 E-value=78 Score=23.68 Aligned_cols=24 Identities=4% Similarity=-0.023 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 215 GGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 215 Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
|+.++...+-+...++..|+++|+
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333334444444
No 59
>PRK15350 type III secretion system protein SsaS; Provisional
Probab=27.09 E-value=2.2e+02 Score=19.89 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 021824 109 YQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFM 158 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 158 (307)
.+.+-+..++++...+.++.|..+......-++.++..-.++.+.+-.+.
T Consensus 3 ~~~v~~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQIQEqTLsFv 52 (88)
T PRK15350 3 DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFM 52 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888877665556666666643344444554443
No 60
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=27.00 E-value=2.1e+02 Score=19.57 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=25.8
Q ss_pred HHhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHH
Q 021824 93 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFP 129 (307)
Q Consensus 93 ~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (307)
+...+..+-+.+.+||++++++.-+++-.++.+-.++
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3334445666778899999999888887776654433
No 61
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=25.90 E-value=2.7e+02 Score=24.35 Aligned_cols=17 Identities=12% Similarity=-0.162 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhccc
Q 021824 224 NWLNVTFLAIYMKFSTA 240 (307)
Q Consensus 224 ~~~~~~~~~~~~~~~~~ 240 (307)
.++.++..+++++|++|
T Consensus 301 m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 301 MAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33444455566666654
No 62
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=24.58 E-value=3.9e+02 Score=24.18 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVT 84 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~ 84 (307)
+...|.+...+.-.++......-........-..+|+..+++...+.....++
T Consensus 25 ~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~~sl~~~y~~l~~s~m~ 77 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGTVSLGALYLSLIDSSMF 77 (390)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHH
Confidence 55667777677666666555555555555555567888887777666666554
No 63
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=23.93 E-value=4.7e+02 Score=22.56 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021824 32 SGEVKKQGYIAAPMVAVTL 50 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~ 50 (307)
|+.++-++.++..+++...
T Consensus 94 K~tw~w~~~Yg~wLv~~V~ 112 (267)
T PF07672_consen 94 KETWKWILIYGIWLVVVVF 112 (267)
T ss_pred chHHHHHHHHHHHheeEEE
Confidence 7788888888888766555
No 64
>TIGR01402 fliQ flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.
Probab=22.93 E-value=2.7e+02 Score=19.45 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 021824 109 YQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFM 158 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 158 (307)
.+..-+..++++...+.++.|..+......-++.++..-.++.|.+-.+.
T Consensus 3 ~~~~~~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~TQIqEqTLsFv 52 (88)
T TIGR01402 3 EETVLDLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFI 52 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45666778888888888888877665556666666644344455554443
No 65
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=21.37 E-value=6.4e+02 Score=23.12 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=18.0
Q ss_pred hHhHhhhccCCccchhHHHHHHHHHHHHHH
Q 021824 201 ICWSLVYKSGLGNLGGALAIGISNWLNVTF 230 (307)
Q Consensus 201 l~~~li~~~~~G~~Ga~~a~~is~~~~~~~ 230 (307)
.+.+++.. +|-.|.++||..=-++..++
T Consensus 77 aT~~~irl--~Gd~GvaIAt~~mT~vilvF 104 (423)
T COG4536 77 ATILGIRL--YGDAGVAIATGVLTFVILVF 104 (423)
T ss_pred HHHHHHHH--hccchHHHHHHHHHHHHHHH
Confidence 34455555 79999998887655444443
No 66
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=21.20 E-value=3.5e+02 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 021824 222 ISNWLNVTFLAIYMKFSTA 240 (307)
Q Consensus 222 is~~~~~~~~~~~~~~~~~ 240 (307)
+..++.+++.+++++|++|
T Consensus 303 ~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 303 ILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 3344455555666766655
No 67
>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=20.13 E-value=3.2e+02 Score=19.14 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 021824 109 YQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFM 158 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 158 (307)
.+..-+..++++...+.++.|..+......-++.++..-.++.|.+-.+.
T Consensus 3 ~~~~i~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQIQEqTLsFv 52 (88)
T PRK12781 3 ERDALELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQIQEVTLTFV 52 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888877665555556666543334444554443
Done!