Query 021824
Match_columns 307
No_of_seqs 160 out of 1717
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 8.8E-31 3E-35 241.4 20.9 273 31-306 7-285 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.4E-24 8.4E-29 198.3 19.3 206 32-238 234-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 47.1 1.4E+02 0.0047 25.6 18.5 9 97-105 82-90 (451)
4 3o7q_A L-fucose-proton symport 43.0 1.6E+02 0.0054 25.2 18.8 31 37-67 27-57 (438)
5 4ev6_A Magnesium transport pro 28.9 1.3E+02 0.0044 25.5 6.7 20 221-240 319-338 (339)
6 2k1k_A Ephrin type-A receptor 26.1 59 0.002 17.9 2.6 16 214-229 14-29 (38)
7 2jwa_A Receptor tyrosine-prote 22.6 1E+02 0.0036 17.6 3.2 7 232-238 32-38 (44)
8 2zjs_E Preprotein translocase 13.2 84 0.0029 19.1 1.5 22 17-38 10-31 (60)
9 2iub_A CORA, divalent cation t 12.5 1.6E+02 0.0054 25.3 3.6 58 183-240 298-362 (363)
10 3dl8_C SECE; RECA-type ATPase 11.5 3E+02 0.01 16.9 4.1 50 17-66 9-58 (65)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.97 E-value=8.8e-31 Score=241.44 Aligned_cols=273 Identities=19% Similarity=0.286 Sum_probs=246.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (307)
Q Consensus 31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~ 110 (307)
.++..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++..+. ..+..+++.+..+.++|++|++|++
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~ 85 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence 478899999999999999999999999999999999999999999999998876 8888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 111 RIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
+.++..+.++.+.++++++..+++++.++++.+++.|++..+.+..|+++++++.++..+...+.+++|+.||++.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999997766888899998888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCCHHHHhcHHHHHHHHh
Q 021824 191 SCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RVPISMELFQGIGEFFHFAI 264 (307)
Q Consensus 191 ~~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 264 (307)
++++.++|+++++++++. |++|+.|+++|+.+++.+..++..++++++++..+. +.++.+.+++..|++++.++
T Consensus 166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (460)
T 3mkt_A 166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245 (460)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence 999999999999999975 479999999999999999999888877665433221 12222445677789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824 265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC 306 (307)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~ 306 (307)
|..++.+.+...+.+.+.+++++|+.+++ +|++..++.++
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~g~~~va--~~~i~~~i~~~ 285 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSL 285 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTSSHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHH--HHHHHHHHHHH
Confidence 99999999999999999999999998887 99999888653
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.92 E-value=2.4e-24 Score=198.31 Aligned_cols=206 Identities=13% Similarity=0.165 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (307)
Q Consensus 32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~ 111 (307)
++.+|++++++.|.+++.+...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|+|+
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56778999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824 112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (307)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~ 190 (307)
.++..+.+..++..++++.+ +++++++++..++.+|+++.+.+..++++++++.++.+++.+..+++++.||++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999999998 66899999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHH-HhhhhhHhHhhhc----cC-CccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824 191 SCAAL-CLHIPICWSLVYK----SG-LGNLGGALAIGISNWLNVTFLAIYMKFS 238 (307)
Q Consensus 191 ~~~~~-~~~i~l~~~li~~----~~-~G~~Ga~~a~~is~~~~~~~~~~~~~~~ 238 (307)
++++. ++++++++++.+. ++ +|+.|+|+|+.+++.+..++..+.++|.
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 9999999999976 66 9999999999999999988876655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=47.06 E-value=1.4e+02 Score=25.64 Aligned_cols=9 Identities=0% Similarity=-0.219 Sum_probs=4.1
Q ss_pred HHHHHHhhc
Q 021824 97 ETLCGQAYG 105 (307)
Q Consensus 97 ~~~~s~~~g 105 (307)
....++.+|
T Consensus 82 ~G~l~dr~g 90 (451)
T 1pw4_A 82 MGSVSDRSN 90 (451)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcC
Confidence 334444444
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=42.97 E-value=1.6e+02 Score=25.16 Aligned_cols=31 Identities=3% Similarity=0.009 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 021824 37 KQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67 (307)
Q Consensus 37 ~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g 67 (307)
.+.....-.++..+...........+..++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 57 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFT 57 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 3333333334444433444444444445553
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.91 E-value=1.3e+02 Score=25.50 Aligned_cols=20 Identities=5% Similarity=-0.154 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 021824 221 GISNWLNVTFLAIYMKFSTA 240 (307)
Q Consensus 221 ~is~~~~~~~~~~~~~~~~~ 240 (307)
....++.++..+++++|++|
T Consensus 319 l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 319 MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 33344455555666766655
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.14 E-value=59 Score=17.90 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHHHH
Q 021824 214 LGGALAIGISNWLNVT 229 (307)
Q Consensus 214 ~Ga~~a~~is~~~~~~ 229 (307)
.|+.++.+.+-.+...
T Consensus 14 AGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 3444444444443333
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.57 E-value=1e+02 Score=17.58 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.2
Q ss_pred HHHHHhc
Q 021824 232 AIYMKFS 238 (307)
Q Consensus 232 ~~~~~~~ 238 (307)
..|++|+
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3445444
No 8
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=13.24 E-value=84 Score=19.12 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=11.9
Q ss_pred ccccCCCCCcchhhhHHHHHHH
Q 021824 17 PKESLSSSSTTWGVLSGEVKKQ 38 (307)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i 38 (307)
++...|-.+-.||..++..+..
T Consensus 10 ~~v~~ElkKV~WPtr~e~~~~t 31 (60)
T 2zjs_E 10 QEARAELARVTWPTREQVVEGT 31 (60)
T ss_dssp --CCCCCCCCCCSCSSSHHHHH
T ss_pred HHHHHHHhhccCcCHHHHHHHH
Confidence 3444555678888755544443
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=12.54 E-value=1.6e+02 Score=25.25 Aligned_cols=58 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHhhhhhHhHhhhc-------cCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 021824 183 LIIPMFLSSCAALCLHIPICWSLVYK-------SGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~l~~~li~~-------~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~ 240 (307)
+..-.|..-.+-..+-+|++++...+ |...-....+......++.++..+++++|++|
T Consensus 298 ~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 298 KTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
No 10
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=11.52 E-value=3e+02 Score=16.92 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021824 17 PKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL 66 (307)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~ 66 (307)
++...|-++-.||..++..+.....-.-..+..++..+.-.+....+..+
T Consensus 9 ~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i 58 (65)
T 3dl8_C 9 KGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFI 58 (65)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!