Query 021824
Match_columns 307
No_of_seqs 160 out of 1717
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 09:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021824.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021824hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 63.2 34 0.0025 27.3 17.8 27 210-236 406-432 (447)
2 d2fyuk1 f.23.15.1 (K:1-53) Sub 8.1 1.8E+02 0.013 15.9 3.1 29 100-128 2-30 (53)
3 d1pv7a_ f.38.1.2 (A:) Lactose 7.9 3.9E+02 0.028 19.6 16.7 8 211-218 376-383 (417)
4 d2r6gf2 f.58.1.1 (F:261-504) M 5.9 3.8E+02 0.028 19.0 5.1 25 254-278 149-173 (244)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 5.4 3.4E+02 0.025 16.4 8.7 25 256-280 70-94 (100)
6 d1ppjd2 f.23.11.1 (D:196-241) 4.2 3.1E+02 0.022 14.3 2.6 15 227-241 19-33 (46)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.8 7.3E+02 0.053 18.1 10.0 66 165-230 89-155 (261)
8 d1lghb_ f.3.1.1 (B:) Light-har 3.0 4E+02 0.029 13.7 2.2 27 107-133 9-35 (43)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.9 6E+02 0.044 15.4 8.5 26 256-281 76-101 (107)
10 d3cx5d2 f.23.11.1 (D:261-307) 2.7 4.6E+02 0.034 13.7 2.6 20 221-240 13-32 (47)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=63.19 E-value=34 Score=27.31 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=14.1
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHH
Q 021824 210 GLGNLGGALAIGISNWLNVTFLAIYMK 236 (307)
Q Consensus 210 ~~G~~Ga~~a~~is~~~~~~~~~~~~~ 236 (307)
.+|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666655555555555544444433
No 2
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.13 E-value=1.8e+02 Score=15.85 Aligned_cols=29 Identities=14% Similarity=-0.096 Sum_probs=20.4
Q ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHHH
Q 021824 100 CGQAYGAQQYQRIGTQTYTAIFCLFLVCF 128 (307)
Q Consensus 100 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (307)
.++..|.+..+.++..+.+....+..-++
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 46778888888888887777666655443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.89 E-value=3.9e+02 Score=19.56 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.5
Q ss_pred CccchhHH
Q 021824 211 LGNLGGAL 218 (307)
Q Consensus 211 ~G~~Ga~~ 218 (307)
+|...+.+
T Consensus 376 ~g~~~~~~ 383 (417)
T d1pv7a_ 376 IGFQGAYL 383 (417)
T ss_dssp HCHHHHHH
T ss_pred HCHHHHHH
Confidence 45444433
No 4
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.88 E-value=3.8e+02 Score=19.01 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=14.5
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHHH
Q 021824 254 QGIGEFFHFAIPSAVMICLEWWSFE 278 (307)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~~ 278 (307)
..+++..++-+|.....+.......
T Consensus 149 s~~~~f~~I~lPl~~p~i~~~~il~ 173 (244)
T d2r6gf2 149 GPFQNFFKITLPLLIKPLTPLMIAS 173 (244)
T ss_dssp CSHHHHHHTTGGGTHHHHHHHHHHH
T ss_pred CccCCeEEEEccccHHHHHHHHHHH
Confidence 4445667777777665554444443
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.44 E-value=3.4e+02 Score=16.45 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 021824 256 IGEFFHFAIPSAVMICLEWWSFELL 280 (307)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~~~~~~~~ 280 (307)
..++.-..+|..+...+...+...+
T Consensus 70 ~LEiiWTviP~lILi~l~~pS~~~l 94 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIGAFSLPVL 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888877766665555443
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.19 E-value=3.1e+02 Score=14.31 Aligned_cols=15 Identities=20% Similarity=-0.095 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcccc
Q 021824 227 NVTFLAIYMKFSTAC 241 (307)
Q Consensus 227 ~~~~~~~~~~~~~~~ 241 (307)
.+..+.++.+|..|.
T Consensus 19 ~l~~l~yy~KR~~Ws 33 (46)
T d1ppjd2 19 LLLPLVYAMKRHKWS 33 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 334445666666554
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.79 E-value=7.3e+02 Score=18.10 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHH
Q 021824 165 LFAYATMQPLIRYFQSQ-SLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTF 230 (307)
Q Consensus 165 ~~~~~i~~~~~~~l~~~-g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~ 230 (307)
.++.....+.+.++.+. .+++...+...+...+.+...-+..+...+|-.+-|-++++++....+-
T Consensus 89 ~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 89 FFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 34445567888877765 4566666655555444444444444444477777777777777665443
No 8
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.05 E-value=4e+02 Score=13.68 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=18.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021824 107 QQYQRIGTQTYTAIFCLFLVCFPLSFL 133 (307)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (307)
++-++..+.+.+++..-+.++++.=++
T Consensus 9 ~EA~EfH~~~~~g~~~F~~iAvvAHiL 35 (43)
T d1lghb_ 9 EEAIAVHDQFKTTFSAFIILAAVAHVL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888887777766654433
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.89 E-value=6e+02 Score=15.44 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021824 256 IGEFFHFAIPSAVMICLEWWSFELLI 281 (307)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~~~~~~~~~ 281 (307)
..++.=.-+|..+...+..-+...+.
T Consensus 76 ~lEi~WTviP~lIL~~laipSl~~Ly 101 (107)
T d3ehbb2 76 PIEVIWTLVPVLILVAIGAFSLPILF 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888777766665555443
No 10
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.71 E-value=4.6e+02 Score=13.69 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 021824 221 GISNWLNVTFLAIYMKFSTA 240 (307)
Q Consensus 221 ~is~~~~~~~~~~~~~~~~~ 240 (307)
.+.-...+..+.+|++|.+|
T Consensus 13 ~~~i~s~l~~~~~y~KR~kW 32 (47)
T d3cx5d2 13 TVIILSSLYLLSIWVKKFKW 32 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Done!