BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021825
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 156/317 (49%), Gaps = 26/317 (8%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63
+RE V R +P DV DIDYMD R FT+D F +LH NG K + ++D
Sbjct: 307 MREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFKGFPEFVNELHNNGQKLVIIVD 366
Query: 64 PGIKHEDG----YFVYDSGSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWGS 118
P I + Y YD GS + +W+ +DG TP IGEVWPG VFPDYT WW
Sbjct: 367 PAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTK 426
Query: 119 LVKDFIYNGV--DGIWNDMNEPAVFKSVTKTMPESNIHRGD------------------D 158
+ F +N V DGIW DMNE + F + + +N D
Sbjct: 427 EFELF-HNQVEFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMD 485
Query: 159 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVS 218
+ HN+YG MA +T E K +KR F+LTR+ F GS ++AA W GDN +
Sbjct: 486 AVQHWGKQYDIHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTA 545
Query: 219 NWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDA 278
W+ L SI VL+ L G P GPDI GF + L RWM +GA +PF R H
Sbjct: 546 TWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGY 605
Query: 279 IDHEPWSFGEEVLFCSS 295
D +P SFG + L +S
Sbjct: 606 KDQDPASFGADSLLLNS 622
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 156/317 (49%), Gaps = 26/317 (8%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63
+RE V R +P DV DIDYMD R FT+D F +LH NG K + ++D
Sbjct: 307 MREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFKGFPEFVNELHNNGQKLVIIVD 366
Query: 64 PGIKHEDG----YFVYDSGSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWGS 118
P I + Y YD GS + +W+ +DG TP IGEVWPG VFPDYT WW
Sbjct: 367 PAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTK 426
Query: 119 LVKDFIYNGV--DGIWNDMNEPAVFKSVTKTMPESNIHRGD------------------D 158
+ F +N V DGIW DMNE + F + + +N D
Sbjct: 427 EFELF-HNQVEFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMD 485
Query: 159 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVS 218
+ HN+YG MA +T E K +KR F+LTR+ F GS ++AA W GDN +
Sbjct: 486 AVQHWGKQYDIHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTA 545
Query: 219 NWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDA 278
W+ L SI VL+ L G P GPDI GF + L RWM +GA +PF R H
Sbjct: 546 TWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGY 605
Query: 279 IDHEPWSFGEEVLFCSS 295
D +P SFG + L +S
Sbjct: 606 KDQDPASFGADSLLLNS 622
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 163/305 (53%), Gaps = 31/305 (10%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63
+ E V +++G +++DI YMD ++ FT+ RFP+PK L +LH K I ++D
Sbjct: 192 VVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFPEPKKLIDELHKRNVKLITIVD 251
Query: 64 PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123
GI+ + Y + SG + + + G F+G++WPG V+PD+ + R WW L+ ++
Sbjct: 252 HGIRVDQNYSPFLSG--MGKFCEIESGELFVGKMWPGTTVYPDFFREDTREWWAGLISEW 309
Query: 124 IYNGVDGIWNDMNEPAVF------KSVTKTMPESNIHRGDDEI-------------GGCQ 164
+ GVDGIW DMNEP F + V ++P + DD + G
Sbjct: 310 LSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLP---VQFRDDRLVTTFPDNVVHYLRGKRV 366
Query: 165 NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 224
H N Y + A +T++G + + +++ F+L+RAG+ G QRYA WTGDN +W+ L
Sbjct: 367 KHEKVRNAYPLYEAMATFKGFRTSHRNE-IFILSRAGYAGIQRYAFIWTGDNTPSWDDLK 425
Query: 225 MSISMVLQLGLSGQPFSGPDIGGFDG------NATPRLFGRWMGIGAMFPFCRGHTESDA 278
+ + +VL L +SG PF G DIGGF G + + L ++ + FPF R H +D
Sbjct: 426 LQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSHKATDG 485
Query: 279 IDHEP 283
ID EP
Sbjct: 486 IDTEP 490
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 165/321 (51%), Gaps = 31/321 (9%)
Query: 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML 62
+++E VR RE GIP D DIDYM+ + FT+D+ F DLH +G K + +L
Sbjct: 334 VVKEVVRRNREAGIPFDTQVTDIDYMEDKKDFTYDQVAFNGLPQFVQDLHDHGQKYVIIL 393
Query: 63 DPGI---KHEDG--YFVYDSGSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWW 116
DP I + +G Y Y+ G+ VWI ++DG TP IGEVWPG V+PD+T WW
Sbjct: 394 DPAISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDWW 453
Query: 117 GSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIHRGD------------------ 157
+ F DG+W DMNE + F + + N+++ +
Sbjct: 454 ANECSIFHQEVQYDGLWIDMNEVSSF--IQGSTKGCNVNKLNYPPFTPDILDKLMYSKTI 511
Query: 158 --DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGD 215
D + H++YG MA +T + ++ +KR F+LTR+ F GS R+AA W GD
Sbjct: 512 CMDAVQNWGKQYDVHSLYGYSMAIATEQAVQKVFPNKRSFILTRSTFAGSGRHAAHWLGD 571
Query: 216 NVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTE 275
N ++WE + SI+ +L+ L G P G DI GF T L RWM +GA +PF R H
Sbjct: 572 NTASWEQMEWSITGMLEFSLFGIPLVGADICGFVAETTEELCRRWMQLGAFYPFSRNH-N 630
Query: 276 SDAIDHE-PWSFGEEVLFCSS 295
SD +H+ P FG+ L S
Sbjct: 631 SDGYEHQDPAFFGQNSLLVKS 651
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 153/314 (48%), Gaps = 32/314 (10%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64
R + +RE IP D+I+MDIDYM F+ FT +++ FPD ++ + I ++D
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 65 GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 124
G+K E GY VY+ G K + + ++ DG+ F+ VWPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 125 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------------------ 154
G++G WNDMNEPA+F S E IH
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 155 -RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 212
R + G + H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 213 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 272
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 273 HTESDAIDHEPWSF 286
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 153/314 (48%), Gaps = 32/314 (10%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64
R + +RE IP D+I+MDIDYM F+ FT +++ FPD ++ + I ++D
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 65 GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 124
G+K E GY VY+ G K + + ++ DG+ F+ VWPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 125 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------------------ 154
G++G WNDMNEPA+F S E IH
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 155 -RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 212
R + G + H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 213 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 272
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 273 HTESDAIDHEPWSF 286
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 153/314 (48%), Gaps = 32/314 (10%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64
R + +RE IP D+I+MDIDYM F+ FT +++ FPD ++ + I ++D
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 65 GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 124
G+K E GY VY+ G K + + ++ DG+ F+ VWPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 125 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------------------ 154
G++G WNDMNEPA+F S E IH
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 155 -RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 212
R + G + H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 213 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 272
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 273 HTESDAIDHEPWSF 286
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 152/314 (48%), Gaps = 32/314 (10%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64
R + +RE IP D+I+MDIDYM F+ FT +++ FPD ++ + I ++D
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 65 GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 124
G+K E GY VY+ G K + + ++ DG+ F+ VWPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 125 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------------------ 154
G++G WNDMNEPA+F S E IH
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 155 -RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 212
R + G + H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 213 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 272
G N S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGANKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 273 HTESDAIDHEPWSF 286
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 152/314 (48%), Gaps = 32/314 (10%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64
R + +RE IP D+I+MDIDYM F+ FT +++ FPD ++ + I ++D
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 65 GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 124
G+K E GY VY+ G K + + ++ DG+ F+ VWPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 125 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------------------ 154
G++G WN MNEPA+F S E IH
Sbjct: 301 DQGIEGFWNAMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 155 -RGDDEIGGCQ-NHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 212
R + G + H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 213 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 272
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 273 HTESDAIDHEPWSF 286
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 145/314 (46%), Gaps = 32/314 (10%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64
R + +RE IP D I+ DIDY F+ FT +++ FPD + + I ++D
Sbjct: 181 RAVAKGYRENHIPIDXIYXDIDYXQDFKDFTVNEKNFPDFPEFVKEXKDQELRLIPIIDA 240
Query: 65 GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 124
G+K E GY VY+ G K + + ++ DG+ F+ VWPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDXLNPEARKWFGDKYRFLI 300
Query: 125 YNGVDGIWNDMNEPAVFKSVT------------------KTMPESNIHRGDDEIGGCQN- 165
G++G WND NEPA+F S K P + + D + ++
Sbjct: 301 DQGIEGFWNDXNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAXQAKXKDIVNSPEDY 360
Query: 166 -------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 212
H HN++G R+ E + D +KR +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNXTRAAGEAFERIDPEKRFLXFSRSSYIGXHRYGGIW 420
Query: 213 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 272
GDN S W H+ +++ + L G ++G D+GGF + T L R++ +G P R
Sbjct: 421 XGDNKSWWSHILLNLKXLPSLNXCGFXYTGADLGGFGDDTTRDLLLRFLALGVFTPLXRD 480
Query: 273 HTESDAIDHEPWSF 286
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 143/341 (41%), Gaps = 60/341 (17%)
Query: 16 IPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG--YF 73
IP DV + DIDYM+ FT +F +L + +G + I +LDP I + Y
Sbjct: 320 IPYDVQYSDIDYMERQLDFTL-SPKFAGFPALINRMKADGMRVILILDPAISGNETQPYP 378
Query: 74 VYDSGSKIDVWIQ-KADGTPFIGEVWP---------------------GPCVFPDYTQSK 111
+ G + DV+I+ DG G+VWP FPD+ ++
Sbjct: 379 AFTRGVEDDVFIKYPNDGDIVWGKVWPDFPDVVVNGSLDWDSQVELYRAYVAFPDFFRNS 438
Query: 112 VRSWWGSLVKDFIYN--------GVDGIWNDMNEPAVF---------------------- 141
WW +++ N DG+W DMNEP+ F
Sbjct: 439 TAKWWKREIEELYNNPQNPERSLKFDGMWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPH 498
Query: 142 -KSVTKTMPESNIHRGDDEI---GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVL 197
+S + + + +I G H HN+YG R TYE ++ +R V+
Sbjct: 499 LESRDRGLSSKTLCMESQQILPDGSLVQHYNVHNLYGWSQTRPTYEAVQEV-TGQRGVVI 557
Query: 198 TRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLF 257
TR+ F S R+A W GDN + W+ L SI +++ L G ++G DI GF +A +
Sbjct: 558 TRSTFPSSGRWAGHWLGDNTAAWDQLKKSIIGMMEFSLFGISYTGADICGFFQDAEYEMC 617
Query: 258 GRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI 298
RWM +GA +PF R H +P S+ + S V+
Sbjct: 618 VRWMQLGAFYPFSRNHNTIGTRRQDPVSWDVAFVNISRTVL 658
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 123/294 (41%), Gaps = 25/294 (8%)
Query: 5 REFVRTFREKGIPCDVIWMDI-----DYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAI 59
R V+ ++ + P D I +D+ D +DKE FP P + AD G K +
Sbjct: 280 RATVQKYKTEDFPLDTIVLDLYWFGKDIKGHMGNLDWDKENFPTPLDMMADFKQQGVKTV 339
Query: 60 WMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSL 119
+ +P + +D K + G P E++ G D + W+ S+
Sbjct: 340 LITEPFVLTSSKR--WDDAVKAKALAKDPQGQPKAFELYFGNGGIIDVFSKEGSRWFSSI 397
Query: 120 VKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMAR 179
KD GV G W D+ EP + PE H IG HN YG A
Sbjct: 398 YKDLSKQGVAGWWGDLGEPEMH-------PEDTQH----AIGDADT---VHNAYGHRWAE 443
Query: 180 STYEGMKLADKDKRPFVLTRAGFIGSQRYAAT-WTGDNVSNWEHLHMSISMVLQLGLSGQ 238
Y+ + RPF++ RAGF+GSQRY WTGD W L + + LQ+ L G
Sbjct: 444 MLYQQQLDQFPELRPFIMMRAGFVGSQRYGMIPWTGDVSRTWGGLASQVELALQMSLLGF 503
Query: 239 PFSGPDIGGF-DGNATPR-LFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEV 290
+ D+GGF DG + ++ RW+ G P R H + D I EP EE
Sbjct: 504 GYIHSDLGGFADGETLDKEMYIRWLQYGVFQPVYRPHGQ-DHIPSEPVFQDEET 556
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 32/304 (10%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFR-C-FTFDKERFPDPKSLAADLHLNGFKAIWM 61
+ F+ E+ +P V D +M F+ C F +D FPDP+ + L G K
Sbjct: 286 VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVW 345
Query: 62 LDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVW-PGPCVFPDYTQSKVRSWWGSLV 120
++P I + V+ + +++ DG+ + + W PG ++ D+T W+ +
Sbjct: 346 INPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIY-DFTNPDACKWYADKL 402
Query: 121 KDFIYNGVDGIWNDMNE--PAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMA 178
K + GVD D E P + + P+ + H++Y +Y L+
Sbjct: 403 KGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ-------------KMHNHYAYIYNELV- 448
Query: 179 RSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQ 238
+ +K ++ + R+ +G+Q++ W GD +N+E + S+ L +GLSG
Sbjct: 449 ---WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGF 505
Query: 239 PFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI 298
F DIGGF+ A ++ RW G + R H PW++ +E S +
Sbjct: 506 GFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPWAYDDE-----SCDV 558
Query: 299 IAFF 302
+ FF
Sbjct: 559 VRFF 562
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 32/304 (10%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFR-C-FTFDKERFPDPKSLAADLHLNGFKAIWM 61
+ F+ E+ +P V D +M F+ C F +D FPDP+ + L G K
Sbjct: 286 VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVW 345
Query: 62 LDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVW-PGPCVFPDYTQSKVRSWWGSLV 120
++P I + V+ + +++ DG+ + + W PG ++ D+T W+ +
Sbjct: 346 INPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIY-DFTNPDACKWYADKL 402
Query: 121 KDFIYNGVDGIWNDMNE--PAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMA 178
K + GVD D E P + + P+ + H++Y +Y L+
Sbjct: 403 KGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ-------------KMHNHYAYIYNELV- 448
Query: 179 RSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQ 238
+ +K ++ + R+ +G+Q++ W GD +N+E + S+ L +GLSG
Sbjct: 449 ---WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGF 505
Query: 239 PFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI 298
F DIGGF+ A ++ RW G + R H PW++ +E S +
Sbjct: 506 GFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPWAYDDE-----SCDV 558
Query: 299 IAFF 302
+ FF
Sbjct: 559 VRFF 562
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 129/342 (37%), Gaps = 70/342 (20%)
Query: 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERF----------PDPKSLAADL 51
I + E V ++ P + + +D+D D R FT E + P+ +S+
Sbjct: 379 ISVEEIVEGYQNNNFPFEGLAVDVDMQDNLRVFTTKGEFWTANRVGTGGDPNNRSVFEWA 438
Query: 52 HLNGFKAI---------------WMLDPGIKHEDGYFVYDSGSKIDVWI-QKADGTPFIG 95
H G + ++ ++ Y DS + D + +IG
Sbjct: 439 HDKGLVCQTNITCFLRNDNEGQDYEVNQTLRERQLYTKNDSLTGTDFGMTDDGPSDAYIG 498
Query: 96 EVWPG-----PCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVT----K 146
+ G +FPD+ + V WWG+ K G+D +W DM PA+
Sbjct: 499 HLDYGGGVECDALFPDWGRPDVAEWWGNNYKKLFSIGLDFVWQDMTVPAMMPHKIGDDIN 558
Query: 147 TMPESNIHRGDDEIGGCQNHSYYH----------------------NVYGMLMARST--- 181
P+ N DD G N YH N++ + ST
Sbjct: 559 VKPDGNWPNADDPSNGQYNWKTYHPQVLVTDMRYENHGREPMVTQRNIHAYTLCESTRKE 618
Query: 182 --YEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQP 239
E K +R ++++R G+IG+Q + W GDN + ++ M I+ + + +S P
Sbjct: 619 GIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQMMIANNINMNMSCLP 678
Query: 240 FSGPDIGGF-----DGNATP---RLFGRWMGIGAMFPFCRGH 273
G DIGGF + TP L R++ G + P+ R H
Sbjct: 679 LVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRNH 720
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 128/304 (42%), Gaps = 32/304 (10%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFR-C-FTFDKERFPDPKSLAADLHLNGFKAIWM 61
+ F+ E+ +P V D + F+ C F +D FPDP+ L G K
Sbjct: 286 VNSFIDGXAERNLPLHVFHFDCFWXKAFQWCDFEWDPLTFPDPEGXIRRLKAKGLKICVW 345
Query: 62 LDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVW-PGPCVFPDYTQSKVRSWWGSLV 120
++P I + V+ + +++ DG+ + + W PG ++ D+T W+ +
Sbjct: 346 INPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIY-DFTNPDACKWYADKL 402
Query: 121 KDFIYNGVDGIWNDMNE--PAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMA 178
K + GVD D E P + + P+ + H++Y +Y L+
Sbjct: 403 KGLVAXGVDCFKTDFGERIPTDVQWFDGSDPQ-------------KXHNHYAYIYNELV- 448
Query: 179 RSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQ 238
+ +K ++ + R+ +G+Q++ W GD +N+E S+ L +GLSG
Sbjct: 449 ---WNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESXAESLRGGLSIGLSGF 505
Query: 239 PFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI 298
F DIGGF+ A ++ RW G + R H PW++ +E S +
Sbjct: 506 GFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPWAYDDE-----SCDV 558
Query: 299 IAFF 302
+ FF
Sbjct: 559 VRFF 562
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 120/304 (39%), Gaps = 41/304 (13%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDY--MDGFRCFTFDKERFPDPKSLAADLH-LNGFKAIW 60
I + ++ +R++ IP D I +D Y D + FDK+ FPDPK+L +H +N I
Sbjct: 450 IIQNLKEYRDRKIPIDNIVLDWSYWPEDAWGSHDFDKQFFPDPKALVDKVHAMNAQIMIS 509
Query: 61 MLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 120
+ D Y ++ + +IG+ + P ++ +W +
Sbjct: 510 VWPKFYPTTDNYKELNAKGFMFNRNLDEKNLDWIGKGYLNAFYDP-FSPEATAIFWKQIR 568
Query: 121 KDFIYNGVDGIWNDMNEPAVFKSVT----KTMPESNIHRGDDEIGGCQNHSYYHNVYGML 176
+G D W D EP + ++T K + N EI N Y +
Sbjct: 569 DKINVHGFDAWWLDAVEPDIHSNLTFEKRKWLMTPNARGNGAEI---------FNAYAVP 619
Query: 177 MARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-AATWTGDNVSNWEHLHMSISMVLQLGL 235
A Y+G D DKR F+LTR+GF G QR +A W+GD VS W + I+ + L
Sbjct: 620 HAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAAGIGTNL 679
Query: 236 SGQPFSGPDIGGFDGNATPR-----------------------LFGRWMGIGAMFPFCRG 272
+G DIGGF R L RW GA P R
Sbjct: 680 AGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAFVPLYRS 739
Query: 273 HTES 276
H ++
Sbjct: 740 HGQN 743
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1CL3|A Chain A, Molecular Insights Into Pebp2CBF-Smmhc Associated Acute
Leukemia Revealed From The Three-Dimensional Structure
Of Pebp2CBF BETA
Length = 138
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 22 WMDIDYMDGFRCFTFDKERFPDPKSLA 48
W+D+ +DG C FD+ER +LA
Sbjct: 110 WIDLHRLDGMGCLEFDEERAQQEDALA 136
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|2JHB|A Chain A, Core Binding Factor Beta
Length = 143
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 22 WMDIDYMDGFRCFTFDKERFPDPKSLA 48
W+D+ +DG C FD+ER +LA
Sbjct: 115 WIDLHRLDGMGCLEFDEERAQQEDALA 141
>pdb|1IO4|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1ILF|A Chain A, Nmr Structure Of Apo Cbfb
Length = 141
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 22 WMDIDYMDGFRCFTFDKERFPDPKSLA 48
W+D+ +DG C FD+ER +LA
Sbjct: 113 WIDLHRLDGMGCLEFDEERAQQEDALA 139
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 40 RFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVW--IQKADGTPFIGEV 97
+ P SL + L A + P + Y Y +G W +Q +P I +
Sbjct: 98 KLASPVSLTDKIQLGCLPAAGTILP-----NNYVCYVTG-----WGRLQTNGASPDILQ- 146
Query: 98 WPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMN 136
G + DY WWGS VK + I G DGI + N
Sbjct: 147 -QGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCN 185
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123
+++ W+ AD + +G++W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGQLWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 92 PFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMN 136
P E+ G DY R WWG+ VK+ + G DG+ + N
Sbjct: 152 PIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACN 197
>pdb|4AD1|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens
pdb|4AD2|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD3|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD4|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Isofagomine And Alpha-1,2-Mannobiose
pdb|4AD5|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin And Alpha-1,2-Mannobiose
Length = 380
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 24/81 (29%)
Query: 59 IWMLDPGIK-------HEDGYFVY------DSGSKIDVWIQ-----KADGTPFIGEVWPG 100
+W P ++ H DG++ Y GS W+ K +G FI
Sbjct: 229 LWTSSPTVQRPFILNAHFDGFYTYFAATGFTYGSTPTNWVSMQKWAKENGKIFI------ 282
Query: 101 PCVFPDYTQSKVRSWWGSLVK 121
P V P Y +++R W GS+++
Sbjct: 283 PSVGPGYIDTRIRPWNGSVIR 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,993,214
Number of Sequences: 62578
Number of extensions: 514469
Number of successful extensions: 1103
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 43
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)