Query 021825
Match_columns 307
No_of_seqs 148 out of 1249
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02763 hydrolase, hydrolyzin 100.0 2.1E-83 4.6E-88 642.1 29.4 305 2-306 201-510 (978)
2 cd06604 GH31_glucosidase_II_Ma 100.0 5E-83 1.1E-87 590.9 28.3 302 2-306 24-331 (339)
3 cd06600 GH31_MGAM-like This fa 100.0 7.3E-82 1.6E-86 577.3 27.0 280 2-306 24-309 (317)
4 cd06603 GH31_GANC_GANAB_alpha 100.0 1.8E-81 4E-86 580.2 28.3 299 2-306 24-331 (339)
5 cd06598 GH31_transferase_CtsZ 100.0 3.9E-79 8.5E-84 559.5 27.2 284 2-302 24-317 (317)
6 cd06602 GH31_MGAM_SI_GAA This 100.0 7E-79 1.5E-83 561.7 27.6 279 2-306 24-313 (339)
7 cd06593 GH31_xylosidase_YicI Y 100.0 2.6E-77 5.7E-82 546.7 28.1 280 2-302 24-306 (308)
8 KOG1066 Glucosidase II catalyt 100.0 8.5E-79 1.9E-83 573.3 16.1 299 1-306 371-679 (915)
9 cd06601 GH31_lyase_GLase GLase 100.0 5.9E-77 1.3E-81 544.9 26.8 275 2-302 24-332 (332)
10 PRK10658 putative alpha-glucos 100.0 3.1E-76 6.8E-81 581.9 26.6 286 2-306 283-575 (665)
11 cd06591 GH31_xylosidase_XylS X 100.0 6.7E-75 1.4E-79 532.0 27.5 281 2-294 24-318 (319)
12 COG1501 Alpha-glucosidases, fa 100.0 1.6E-75 3.6E-80 581.1 23.8 289 1-306 279-576 (772)
13 cd06599 GH31_glycosidase_Aec37 100.0 1.2E-74 2.6E-79 529.9 24.9 280 2-294 29-316 (317)
14 cd06594 GH31_glucosidase_YihQ 100.0 2.8E-74 6.1E-79 526.5 25.2 275 2-293 23-315 (317)
15 PF01055 Glyco_hydro_31: Glyco 100.0 7.2E-73 1.6E-77 541.6 22.8 298 2-306 43-347 (441)
16 cd06597 GH31_transferase_CtsY 100.0 3.3E-72 7.1E-77 517.2 24.4 274 2-292 24-332 (340)
17 PRK10426 alpha-glucosidase; Pr 100.0 6.4E-71 1.4E-75 542.9 27.0 285 2-306 221-530 (635)
18 cd06592 GH31_glucosidase_KIAA1 100.0 2E-68 4.4E-73 485.9 22.4 261 2-295 30-303 (303)
19 cd06595 GH31_xylosidase_XylS-l 100.0 5.6E-68 1.2E-72 480.6 22.6 254 2-294 25-291 (292)
20 cd06589 GH31 The enzymes of gl 100.0 1.5E-65 3.2E-70 459.3 23.6 238 2-295 24-265 (265)
21 KOG1065 Maltase glucoamylase a 100.0 3.3E-63 7.1E-68 480.9 19.1 297 1-307 310-614 (805)
22 cd06596 GH31_CPE1046 CPE1046 i 100.0 2.8E-47 6.1E-52 330.1 18.0 210 2-302 45-254 (261)
23 PF02065 Melibiase: Melibiase; 99.7 6.5E-17 1.4E-21 151.3 14.5 127 2-138 58-194 (394)
24 PLN03231 putative alpha-galact 99.4 1.6E-11 3.4E-16 112.9 19.2 194 1-230 17-255 (357)
25 PLN02229 alpha-galactosidase 99.3 3.1E-10 6.7E-15 106.4 18.0 160 1-231 79-254 (427)
26 PLN02692 alpha-galactosidase 99.3 6.6E-10 1.4E-14 103.8 19.4 161 1-231 72-248 (412)
27 PLN02808 alpha-galactosidase 99.2 1.2E-09 2.5E-14 101.7 19.5 161 1-231 48-224 (386)
28 COG3345 GalA Alpha-galactosida 99.2 6.1E-11 1.3E-15 111.8 10.6 252 2-301 309-582 (687)
29 PLN02899 alpha-galactosidase 99.2 1.8E-09 3.9E-14 104.2 18.1 191 1-230 47-286 (633)
30 KOG2366 Alpha-D-galactosidase 98.3 1.1E-05 2.3E-10 73.7 11.2 190 2-266 60-281 (414)
31 PLN02355 probable galactinol-- 97.7 0.00039 8.3E-09 69.4 11.1 129 2-136 220-396 (758)
32 PLN02219 probable galactinol-- 97.6 0.00061 1.3E-08 67.9 10.9 131 2-136 216-388 (775)
33 PLN02711 Probable galactinol-- 97.6 0.0008 1.7E-08 67.1 11.5 128 2-136 230-407 (777)
34 TIGR02456 treS_nterm trehalose 97.5 0.00087 1.9E-08 66.2 11.9 129 3-136 29-199 (539)
35 PLN02684 Probable galactinol-- 97.4 0.0016 3.4E-08 65.0 11.5 128 2-136 219-387 (750)
36 PF02638 DUF187: Glycosyl hydr 97.4 0.0022 4.7E-08 58.9 11.5 130 2-135 19-162 (311)
37 PF14871 GHL6: Hypothetical gl 97.4 0.00088 1.9E-08 53.5 7.6 121 4-135 2-132 (132)
38 PF00128 Alpha-amylase: Alpha 97.3 0.00049 1.1E-08 62.1 6.1 131 4-137 6-171 (316)
39 PRK10785 maltodextrin glucosid 97.3 0.0026 5.7E-08 63.6 11.3 128 3-136 180-337 (598)
40 PRK10933 trehalose-6-phosphate 97.2 0.0031 6.8E-08 62.4 11.7 130 3-137 34-203 (551)
41 PLN00196 alpha-amylase; Provis 97.2 0.0066 1.4E-07 58.1 13.3 131 4-136 46-205 (428)
42 TIGR01515 branching_enzym alph 97.2 0.0032 6.9E-08 63.2 11.6 119 9-136 164-297 (613)
43 TIGR02403 trehalose_treC alpha 97.2 0.0029 6.3E-08 62.6 10.9 129 4-137 29-196 (543)
44 PF05691 Raffinose_syn: Raffin 97.1 0.0043 9.3E-08 62.4 11.4 129 2-136 212-390 (747)
45 TIGR02104 pulA_typeI pullulana 97.0 0.0076 1.6E-07 60.4 11.7 89 43-136 230-321 (605)
46 PF13200 DUF4015: Putative gly 97.0 0.014 3E-07 53.4 12.0 122 3-137 14-147 (316)
47 COG1649 Uncharacterized protei 96.9 0.0049 1.1E-07 58.1 9.3 131 2-136 64-208 (418)
48 PRK03705 glycogen debranching 96.8 0.0058 1.3E-07 61.6 9.1 91 43-136 243-338 (658)
49 PRK09441 cytoplasmic alpha-amy 96.6 0.05 1.1E-06 53.0 13.4 33 105-137 203-236 (479)
50 PRK14510 putative bifunctional 96.4 0.012 2.6E-07 63.3 9.1 93 43-136 248-344 (1221)
51 PRK12313 glycogen branching en 96.4 0.053 1.2E-06 54.7 12.7 120 8-137 177-312 (633)
52 TIGR02100 glgX_debranch glycog 96.3 0.019 4.1E-07 58.3 9.4 93 43-137 246-344 (688)
53 PLN02361 alpha-amylase 96.3 0.093 2E-06 49.8 13.4 130 3-137 30-182 (401)
54 TIGR01370 cysRS possible cyste 96.2 0.023 5E-07 52.0 8.0 103 17-137 64-170 (315)
55 PLN02960 alpha-amylase 96.1 0.054 1.2E-06 55.7 11.1 124 6-138 421-560 (897)
56 PRK14706 glycogen branching en 96.1 0.06 1.3E-06 54.2 11.3 98 34-137 207-309 (639)
57 COG0366 AmyA Glycosidases [Car 96.1 0.034 7.5E-07 54.0 9.4 129 5-136 32-200 (505)
58 PRK14705 glycogen branching en 96.0 0.045 9.8E-07 58.6 10.6 123 7-137 771-907 (1224)
59 TIGR02402 trehalose_TreZ malto 96.0 0.064 1.4E-06 53.1 11.1 118 3-136 112-246 (542)
60 PLN02784 alpha-amylase 96.0 0.14 2.9E-06 52.7 13.1 132 3-137 522-676 (894)
61 PRK12568 glycogen branching en 95.9 0.081 1.8E-06 53.8 11.4 121 7-136 275-410 (730)
62 PLN02447 1,4-alpha-glucan-bran 95.9 0.068 1.5E-06 54.5 10.5 125 6-139 255-395 (758)
63 PRK05402 glycogen branching en 95.8 0.11 2.3E-06 53.4 12.2 120 9-137 273-407 (726)
64 TIGR02102 pullulan_Gpos pullul 95.8 0.043 9.2E-07 58.3 9.3 86 43-136 556-644 (1111)
65 PLN03244 alpha-amylase; Provis 95.6 0.035 7.6E-07 56.3 7.3 93 39-137 435-534 (872)
66 COG1523 PulA Type II secretory 95.6 0.067 1.5E-06 54.0 9.2 90 43-136 266-361 (697)
67 KOG0471 Alpha-amylase [Carbohy 95.5 0.071 1.5E-06 52.8 9.0 124 14-137 50-216 (545)
68 PRK09505 malS alpha-amylase; R 95.4 0.17 3.7E-06 51.3 11.6 29 109-137 435-464 (683)
69 COG0296 GlgB 1,4-alpha-glucan 95.2 0.16 3.5E-06 50.6 10.2 127 3-138 166-307 (628)
70 TIGR02103 pullul_strch alpha-1 95.1 0.089 1.9E-06 54.7 8.5 89 43-136 405-498 (898)
71 PF10566 Glyco_hydro_97: Glyco 94.6 0.13 2.9E-06 46.1 7.3 59 2-63 32-94 (273)
72 PF13199 Glyco_hydro_66: Glyco 94.3 0.32 7E-06 48.0 9.8 200 2-233 118-350 (559)
73 COG2342 Predicted extracellula 94.1 0.31 6.7E-06 43.4 8.3 108 14-139 40-151 (300)
74 PRK13840 sucrose phosphorylase 93.9 1.3 2.8E-05 43.3 12.9 127 2-136 20-195 (495)
75 PLN02877 alpha-amylase/limit d 93.6 0.3 6.4E-06 51.2 8.4 90 43-137 467-562 (970)
76 KOG0470 1,4-alpha-glucan branc 93.2 0.27 5.9E-06 49.3 7.1 89 43-137 312-405 (757)
77 PF02449 Glyco_hydro_42: Beta- 90.0 1.4 3E-05 41.4 8.0 123 2-140 10-140 (374)
78 TIGR03852 sucrose_gtfA sucrose 88.1 4.6 9.9E-05 39.3 10.1 130 2-136 17-191 (470)
79 PLN02982 galactinol-raffinose 87.7 6.8 0.00015 40.2 11.1 28 2-29 239-266 (865)
80 smart00642 Aamy Alpha-amylase 87.2 1.8 4E-05 35.8 6.0 59 3-64 20-92 (166)
81 TIGR02455 TreS_stutzeri trehal 85.9 4.1 8.8E-05 41.0 8.5 32 105-136 262-296 (688)
82 PF01120 Alpha_L_fucos: Alpha- 85.5 8.1 0.00018 36.0 10.1 114 4-138 93-217 (346)
83 PF14885 GHL15: Hypothetical g 82.8 3.1 6.6E-05 30.0 4.7 55 80-136 18-76 (79)
84 PRK14582 pgaB outer membrane N 82.6 16 0.00035 37.2 11.2 118 2-135 334-466 (671)
85 PF01301 Glyco_hydro_35: Glyco 81.4 2.3 5E-05 39.2 4.6 68 2-71 24-92 (319)
86 cd04883 ACT_AcuB C-terminal AC 80.2 8.5 0.00019 26.3 6.2 57 3-60 14-70 (72)
87 COG4868 Uncharacterized protei 80.1 6.8 0.00015 35.9 6.9 75 2-88 92-167 (493)
88 smart00812 Alpha_L_fucos Alpha 73.0 42 0.0009 31.8 10.5 27 111-137 173-203 (384)
89 cd06570 GH20_chitobiase-like_1 70.2 36 0.00078 31.2 9.2 114 2-125 18-144 (311)
90 PF13653 GDPD_2: Glycerophosph 69.0 5.2 0.00011 23.1 2.2 17 119-135 12-28 (30)
91 PF03537 Glyco_hydro_114: Glyc 68.4 8.5 0.00019 27.2 3.7 22 43-64 37-58 (74)
92 cd02742 GH20_hexosaminidase Be 67.3 21 0.00046 32.5 7.0 114 1-125 15-145 (303)
93 COG0036 Rpe Pentose-5-phosphat 66.4 13 0.00028 32.3 5.0 64 6-69 51-123 (220)
94 PF00331 Glyco_hydro_10: Glyco 64.0 8 0.00017 35.6 3.6 51 2-60 188-238 (320)
95 KOG3111 D-ribulose-5-phosphate 63.1 12 0.00025 31.9 4.0 40 30-69 87-126 (224)
96 cd06569 GH20_Sm-chitobiase-lik 62.9 47 0.001 32.1 8.8 124 1-125 21-191 (445)
97 cd06416 GH25_Lys1-like Lys-1 i 61.9 12 0.00025 31.7 4.0 62 2-65 71-133 (196)
98 PF07488 Glyco_hydro_67M: Glyc 61.5 40 0.00086 30.8 7.3 98 3-134 58-159 (328)
99 cd06564 GH20_DspB_LnbB-like Gl 61.3 35 0.00075 31.4 7.4 109 1-125 16-152 (326)
100 PRK10265 chaperone-modulator p 61.0 14 0.0003 27.8 3.9 45 251-303 18-62 (101)
101 cd03078 GST_N_Metaxin1_like GS 59.3 32 0.0007 24.0 5.3 53 3-55 18-73 (73)
102 smart00633 Glyco_10 Glycosyl h 59.2 18 0.0004 31.9 5.0 48 3-60 137-187 (254)
103 cd06565 GH20_GcnA-like Glycosy 58.8 53 0.0011 29.9 8.0 108 1-125 16-128 (301)
104 COG1874 LacA Beta-galactosidas 57.8 1.2E+02 0.0025 31.1 10.7 125 2-140 30-163 (673)
105 PRK08883 ribulose-phosphate 3- 56.2 24 0.00052 30.6 5.1 63 6-68 47-119 (220)
106 cd00419 Ferrochelatase_C Ferro 56.0 43 0.00094 26.6 6.2 61 2-67 41-103 (135)
107 cd04908 ACT_Bt0572_1 N-termina 55.3 61 0.0013 21.7 6.2 52 3-59 14-65 (66)
108 cd06568 GH20_SpHex_like A subg 55.0 83 0.0018 29.1 8.7 115 1-125 17-151 (329)
109 PF00728 Glyco_hydro_20: Glyco 54.6 24 0.00053 32.5 5.2 119 1-125 17-153 (351)
110 PF10096 DUF2334: Uncharacteri 54.3 31 0.00067 30.4 5.5 59 2-61 16-74 (243)
111 cd06563 GH20_chitobiase-like T 53.2 96 0.0021 29.0 8.9 115 1-125 17-162 (357)
112 cd06542 GH18_EndoS-like Endo-b 53.1 53 0.0012 28.8 6.9 20 44-63 53-72 (255)
113 cd06562 GH20_HexA_HexB-like Be 53.1 86 0.0019 29.2 8.6 115 1-125 17-146 (348)
114 PRK08745 ribulose-phosphate 3- 52.8 30 0.00065 30.1 5.1 63 6-68 51-123 (223)
115 COG1242 Predicted Fe-S oxidore 50.5 80 0.0017 28.6 7.3 57 1-61 128-187 (312)
116 cd04882 ACT_Bt0572_2 C-termina 50.4 64 0.0014 21.1 5.5 53 3-58 12-64 (65)
117 PHA02119 hypothetical protein 50.3 9.7 0.00021 26.4 1.3 49 9-57 19-69 (87)
118 TIGR01675 plant-AP plant acid 49.7 29 0.00064 30.3 4.5 61 2-62 61-143 (229)
119 COG1306 Uncharacterized conser 47.8 2.3E+02 0.0049 26.1 9.8 122 4-137 79-219 (400)
120 PF07555 NAGidase: beta-N-acet 47.8 40 0.00086 30.9 5.3 91 3-135 16-112 (306)
121 PF08924 DUF1906: Domain of un 47.1 38 0.00082 27.0 4.5 57 3-61 78-135 (136)
122 KOG1405 4-aminobutyrate aminot 46.8 25 0.00054 32.9 3.7 55 1-60 255-310 (484)
123 PLN02635 disproportionating en 45.6 36 0.00077 33.8 4.9 76 45-124 227-314 (538)
124 COG0826 Collagenase and relate 45.3 1.2E+02 0.0025 28.4 8.0 45 18-67 27-74 (347)
125 PRK09722 allulose-6-phosphate 44.2 50 0.0011 28.9 5.1 63 6-68 49-121 (229)
126 TIGR02401 trehalose_TreY malto 44.0 58 0.0013 34.1 6.3 60 2-64 16-87 (825)
127 TIGR01459 HAD-SF-IIA-hyp4 HAD- 43.4 43 0.00094 29.1 4.7 41 18-63 8-48 (242)
128 cd04909 ACT_PDH-BS C-terminal 43.3 51 0.0011 22.1 4.2 54 3-58 14-69 (69)
129 PRK09454 ugpQ cytoplasmic glyc 43.1 40 0.00087 29.6 4.5 19 119-137 222-240 (249)
130 COG0041 PurE Phosphoribosylcar 43.1 77 0.0017 25.9 5.5 46 4-62 18-64 (162)
131 PRK08005 epimerase; Validated 42.9 54 0.0012 28.3 5.1 63 6-68 48-119 (210)
132 PF11308 GHL1-3: Glycosyl hydr 42.7 74 0.0016 29.2 6.2 52 80-135 72-127 (307)
133 PRK15447 putative protease; Pr 42.6 45 0.00098 30.4 4.8 56 3-66 16-71 (301)
134 PRK13663 hypothetical protein; 41.6 1.6E+02 0.0034 28.4 8.1 48 2-61 92-139 (493)
135 cd02871 GH18_chitinase_D-like 41.2 1.1E+02 0.0023 28.0 7.1 57 44-136 62-119 (312)
136 COG3661 AguA Alpha-glucuronida 41.0 1.4E+02 0.0029 29.0 7.6 101 3-134 184-288 (684)
137 PF04468 PSP1: PSP1 C-terminal 40.9 1.1E+02 0.0024 22.2 5.9 48 7-54 31-78 (88)
138 PRK15063 isocitrate lyase; Pro 40.9 50 0.0011 31.7 4.9 34 32-66 315-350 (428)
139 PLN02645 phosphoglycolate phos 40.6 86 0.0019 28.6 6.4 42 17-63 27-68 (311)
140 PF08821 CGGC: CGGC domain; I 40.6 1.4E+02 0.0031 22.7 6.6 53 3-62 53-106 (107)
141 PRK14508 4-alpha-glucanotransf 40.2 32 0.00069 33.8 3.6 74 45-124 201-288 (497)
142 PLN03059 beta-galactosidase; P 39.2 66 0.0014 33.7 5.8 64 4-69 61-125 (840)
143 cd08613 GDPD_GDE4_like_1 Glyce 39.1 47 0.001 30.5 4.3 18 44-61 253-270 (309)
144 PRK06769 hypothetical protein; 38.6 36 0.00078 28.1 3.3 46 17-62 3-51 (173)
145 cd08575 GDPD_GDE4_like Glycero 38.3 48 0.001 29.5 4.2 17 119-135 244-260 (264)
146 PF13344 Hydrolase_6: Haloacid 38.2 53 0.0012 24.5 3.9 27 37-63 12-38 (101)
147 cd04886 ACT_ThrD-II-like C-ter 37.5 85 0.0018 20.7 4.6 57 3-59 11-72 (73)
148 PF00150 Cellulase: Cellulase 37.1 25 0.00054 30.9 2.3 62 3-64 22-84 (281)
149 TIGR00217 malQ 4-alpha-glucano 36.8 25 0.00053 34.7 2.3 72 47-124 217-302 (513)
150 TIGR01668 YqeG_hyp_ppase HAD s 36.8 64 0.0014 26.5 4.5 44 16-63 23-67 (170)
151 TIGR00262 trpA tryptophan synt 36.3 1E+02 0.0022 27.4 6.0 66 2-67 72-152 (256)
152 COG0647 NagD Predicted sugar p 36.3 67 0.0015 28.9 4.8 41 18-63 8-48 (269)
153 PF00834 Ribul_P_3_epim: Ribul 36.3 40 0.00086 28.8 3.2 36 34-69 84-119 (201)
154 cd02877 GH18_hevamine_XipI_cla 35.9 1.6E+02 0.0034 26.6 7.2 24 40-63 57-80 (280)
155 cd08556 GDPD Glycerophosphodie 35.8 96 0.0021 25.3 5.5 17 119-135 173-189 (189)
156 PF01373 Glyco_hydro_14: Glyco 35.2 38 0.00082 32.2 3.1 82 3-91 17-111 (402)
157 cd06522 GH25_AtlA-like AtlA is 35.0 55 0.0012 27.6 3.9 56 3-65 75-133 (192)
158 PRK08091 ribulose-phosphate 3- 34.7 72 0.0016 27.9 4.6 35 34-68 95-131 (228)
159 TIGR01664 DNA-3'-Pase DNA 3'-p 34.6 45 0.00098 27.4 3.2 24 40-63 43-66 (166)
160 cd02875 GH18_chitobiase Chitob 34.5 1.1E+02 0.0025 28.5 6.3 60 41-138 62-123 (358)
161 cd03054 GST_N_Metaxin GST_N fa 34.1 1.2E+02 0.0025 20.5 4.9 50 4-53 19-71 (72)
162 TIGR01261 hisB_Nterm histidino 34.0 47 0.001 27.1 3.2 24 39-62 29-52 (161)
163 cd04934 ACT_AK-Hom3_1 CT domai 33.9 1.2E+02 0.0025 21.2 4.8 47 4-54 18-66 (73)
164 TIGR01691 enolase-ppase 2,3-di 33.7 31 0.00067 29.9 2.2 29 35-63 91-119 (220)
165 TIGR00213 GmhB_yaeD D,D-heptos 33.7 47 0.001 27.3 3.3 23 40-62 27-49 (176)
166 cd03409 Chelatase_Class_II Cla 32.7 1.9E+02 0.0041 20.9 6.4 28 40-67 43-70 (101)
167 cd02874 GH18_CFLE_spore_hydrol 32.7 37 0.0008 30.9 2.6 55 4-65 92-147 (313)
168 TIGR03356 BGL beta-galactosida 32.6 1.1E+02 0.0024 29.4 6.0 105 4-141 56-165 (427)
169 TIGR01656 Histidinol-ppas hist 32.4 52 0.0011 26.2 3.2 24 40-63 28-51 (147)
170 PF11340 DUF3142: Protein of u 32.4 80 0.0017 26.5 4.3 51 2-61 27-80 (181)
171 cd08564 GDPD_GsGDE_like Glycer 32.4 96 0.0021 27.4 5.2 18 119-136 240-257 (265)
172 TIGR01162 purE phosphoribosyla 31.9 1.3E+02 0.0027 24.7 5.3 46 4-62 14-60 (156)
173 cd06415 GH25_Cpl1-like Cpl-1 l 31.5 59 0.0013 27.4 3.5 57 4-65 73-131 (196)
174 PRK14511 maltooligosyl trehalo 31.4 1.2E+02 0.0026 32.1 6.2 60 2-64 20-91 (879)
175 COG3693 XynA Beta-1,4-xylanase 31.2 96 0.0021 28.7 4.9 22 3-24 205-226 (345)
176 COG1878 Kynurenine formamidase 31.1 1.2E+02 0.0025 26.4 5.3 57 6-64 96-154 (218)
177 PF08903 DUF1846: Domain of un 30.3 1.2E+02 0.0027 29.1 5.6 48 2-61 91-138 (491)
178 cd06549 GH18_trifunctional GH1 30.3 44 0.00094 30.3 2.7 29 210-242 261-289 (298)
179 PF13546 DDE_5: DDE superfamil 29.9 1.5E+02 0.0033 26.2 6.1 49 2-64 170-218 (273)
180 cd02872 GH18_chitolectin_chito 29.1 42 0.00091 31.2 2.4 59 4-64 101-162 (362)
181 cd06545 GH18_3CO4_chitinase Th 27.8 1.7E+02 0.0036 25.7 5.9 62 43-137 47-109 (253)
182 KOG0674 Calreticulin [Posttran 27.4 27 0.00059 31.9 0.8 11 239-249 131-141 (406)
183 PRK10904 DNA adenine methylase 27.4 1.6E+02 0.0034 26.3 5.7 47 17-63 174-228 (271)
184 TIGR01662 HAD-SF-IIIA HAD-supe 27.3 74 0.0016 24.4 3.3 26 38-63 24-49 (132)
185 TIGR00756 PPR pentatricopeptid 27.2 66 0.0014 17.6 2.3 18 2-19 17-34 (35)
186 PF12000 Glyco_trans_4_3: Gkyc 27.0 1.7E+02 0.0038 24.3 5.5 27 2-28 51-77 (171)
187 TIGR02328 conserved hypothetic 26.3 1.1E+02 0.0025 23.6 3.8 53 5-57 55-119 (120)
188 COG0602 NrdG Organic radical a 26.0 1.9E+02 0.0042 24.8 5.8 51 3-63 57-107 (212)
189 cd04888 ACT_PheB-BS C-terminal 25.8 1.4E+02 0.0031 20.1 4.2 52 3-54 13-66 (76)
190 PRK15452 putative protease; Pr 25.4 2.7E+02 0.0059 27.0 7.2 44 15-63 21-67 (443)
191 cd07381 MPP_CapA CapA and rela 25.0 2.5E+02 0.0055 24.2 6.5 57 2-68 162-220 (239)
192 PRK08057 cobalt-precorrin-6x r 25.0 2.8E+02 0.0061 24.5 6.8 65 3-68 13-79 (248)
193 cd04902 ACT_3PGDH-xct C-termin 24.9 2.2E+02 0.0047 18.9 6.1 56 3-59 12-68 (73)
194 TIGR01681 HAD-SF-IIIC HAD-supe 24.9 51 0.0011 25.6 1.9 22 40-61 30-51 (128)
195 PF13407 Peripla_BP_4: Peripla 24.7 2.8E+02 0.0061 23.6 6.8 23 42-64 67-89 (257)
196 cd06414 GH25_LytC-like The Lyt 24.7 61 0.0013 27.2 2.4 22 44-65 115-136 (191)
197 smart00812 Alpha_L_fucos Alpha 24.4 66 0.0014 30.5 2.8 28 35-63 75-102 (384)
198 cd06544 GH18_narbonin Narbonin 24.1 95 0.0021 27.5 3.6 54 6-67 104-158 (253)
199 COG0731 Fe-S oxidoreductases [ 24.1 2.3E+02 0.005 25.9 6.1 26 38-63 91-117 (296)
200 cd06546 GH18_CTS3_chitinase GH 24.0 2.5E+02 0.0054 24.8 6.3 21 43-63 60-80 (256)
201 KOG1615 Phosphoserine phosphat 24.0 84 0.0018 26.9 3.0 24 39-62 88-111 (227)
202 cd02876 GH18_SI-CLP Stabilin-1 23.8 63 0.0014 29.5 2.5 59 5-66 98-158 (318)
203 PF07485 DUF1529: Domain of Un 23.6 1.9E+02 0.0042 22.6 4.8 52 1-53 67-118 (123)
204 cd06418 GH25_BacA-like BacA is 23.6 75 0.0016 27.4 2.8 63 3-67 90-153 (212)
205 PRK13745 anaerobic sulfatase-m 23.3 2E+02 0.0042 27.4 5.9 46 2-59 153-198 (412)
206 COG1092 Predicted SAM-dependen 23.3 64 0.0014 30.7 2.5 66 2-67 275-342 (393)
207 TIGR02055 APS_reductase thiore 23.3 1.5E+02 0.0033 24.9 4.6 43 7-61 8-51 (191)
208 PRK12563 sulfate adenylyltrans 23.2 1.3E+02 0.0029 27.6 4.4 36 14-61 64-100 (312)
209 cd02874 GH18_CFLE_spore_hydrol 23.0 1.8E+02 0.0038 26.4 5.3 65 44-136 47-112 (313)
210 PRK14507 putative bifunctional 22.9 1.9E+02 0.0041 33.0 6.2 63 2-67 758-833 (1693)
211 PF09445 Methyltransf_15: RNA 22.9 1E+02 0.0022 25.5 3.3 59 4-63 57-120 (163)
212 PRK11440 putative hydrolase; P 22.7 2.4E+02 0.0053 23.3 5.8 24 2-27 35-58 (188)
213 cd06525 GH25_Lyc-like Lyc mura 22.5 70 0.0015 26.6 2.4 23 44-66 105-128 (184)
214 PF02635 DrsE: DsrE/DsrF-like 22.2 1.7E+02 0.0037 21.7 4.4 55 6-60 22-80 (122)
215 TIGR01428 HAD_type_II 2-haloal 22.0 1E+02 0.0022 25.6 3.3 25 39-63 92-116 (198)
216 PRK11587 putative phosphatase; 22.0 92 0.002 26.4 3.1 25 39-63 83-107 (218)
217 PF13380 CoA_binding_2: CoA bi 21.9 2.7E+02 0.0059 21.2 5.4 41 2-59 66-106 (116)
218 PF05913 DUF871: Bacterial pro 21.6 1.4E+02 0.0031 28.0 4.4 59 2-67 14-72 (357)
219 cd04932 ACT_AKiii-LysC-EC_1 AC 21.5 2.9E+02 0.0063 19.2 5.6 48 4-55 18-69 (75)
220 PF04914 DltD_C: DltD C-termin 21.4 48 0.001 26.3 1.1 27 39-65 33-59 (130)
221 PRK08942 D,D-heptose 1,7-bisph 21.3 1.1E+02 0.0024 25.1 3.3 23 39-61 29-51 (181)
222 PF13591 MerR_2: MerR HTH fami 21.1 1.6E+02 0.0036 21.1 3.8 42 252-302 12-53 (84)
223 TIGR01990 bPGM beta-phosphoglu 21.1 1.1E+02 0.0025 24.7 3.4 24 39-62 87-110 (185)
224 cd03465 URO-D_like The URO-D _ 21.0 1E+02 0.0023 28.0 3.4 57 4-62 170-228 (330)
225 TIGR01452 PGP_euk phosphoglyco 20.9 1.7E+02 0.0038 25.9 4.8 41 18-63 2-42 (279)
226 TIGR02247 HAD-1A3-hyp Epoxide 20.6 1E+02 0.0023 25.8 3.1 25 39-63 94-118 (211)
227 PF01120 Alpha_L_fucos: Alpha- 20.5 77 0.0017 29.5 2.4 27 35-62 85-111 (346)
228 TIGR01685 MDP-1 magnesium-depe 20.5 1.1E+02 0.0024 25.4 3.2 25 38-62 44-68 (174)
229 TIGR01454 AHBA_synth_RP 3-amin 20.4 1.1E+02 0.0025 25.4 3.3 26 38-63 74-99 (205)
230 PF02698 DUF218: DUF218 domain 20.4 1E+02 0.0023 24.4 2.9 53 3-65 55-108 (155)
231 TIGR01449 PGP_bact 2-phosphogl 20.1 1.2E+02 0.0026 25.3 3.4 26 38-63 84-109 (213)
232 PF13419 HAD_2: Haloacid dehal 20.1 1.3E+02 0.0028 23.7 3.4 26 38-63 76-101 (176)
233 cd03113 CTGs CTP synthetase (C 20.0 2E+02 0.0044 25.6 4.7 44 45-90 20-64 (255)
No 1
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=2.1e-83 Score=642.14 Aligned_cols=305 Identities=79% Similarity=1.426 Sum_probs=291.8
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
++|++++++||+++||||+||+|++|++++++|+||+++||||++|+++||++|+|++++++|.|..+++|++|+++.++
T Consensus 201 ~eV~eva~~fre~~IP~DvIwlDidYm~g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~ 280 (978)
T PLN02763 201 KRVAEIARTFREKKIPCDVVWMDIDYMDGFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCEN 280 (978)
T ss_pred HHHHHHHHHHHHcCCCceEEEEehhhhcCCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCcccCCCCCCC
Q 021825 82 DVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 161 (307)
Q Consensus 82 ~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~~~ 161 (307)
++|+++++|+++++.+|||.++++|||||+|++||.++++++++.||||||+|+|||+.|+...+++|.+..|.+....+
T Consensus 281 ~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~g 360 (978)
T PLN02763 281 DVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELG 360 (978)
T ss_pred CeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999987777899888887765556
Q ss_pred CccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCCCcc
Q 021825 162 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFS 241 (307)
Q Consensus 162 ~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~p~~ 241 (307)
+..+|..+||+|++++++++||++++..+++|||++|||+|+|+|||+++|+||+.++|+.|+.+|+++|++||||+|||
T Consensus 361 G~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGsQRYaa~WtGDn~SsWe~L~~sI~~~LnlgLSGipf~ 440 (978)
T PLN02763 361 GVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGSQRYAATWTGDNLSNWEHLHMSIPMVLQLGLSGQPLS 440 (978)
T ss_pred CccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcCCCCceEECCCccCCHHHHHHHHHHHHHHHhcCCccc
Confidence 66678999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 242 GPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 242 g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
|+|||||.+++++|||+||+|+|+|+|+||+|+..++.++|||.|++++++++|++| +|||+|||
T Consensus 441 G~DIGGF~G~~~~ELy~RW~Q~GaF~P~fR~Hs~~gt~~qEPW~fgeev~~i~R~ai~LRYrLLPYiYSL 510 (978)
T PLN02763 441 GPDIGGFAGDATPKLFGRWMGVGAMFPFARGHSEQGTIDHEPWSFGEECEEVCRLALKRRYRLLPHFYTL 510 (978)
T ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhHHhhhccCCCCCCcCCeecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887789999999999999999998 77899986
No 2
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=100.00 E-value=5e-83 Score=590.92 Aligned_cols=302 Identities=57% Similarity=1.083 Sum_probs=282.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
++|+++++++|+++||||+|+||++|++++++|+||+++||||++|+++||++|+|+++|++|+|..+++|.+|+++.++
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~ 103 (339)
T cd06604 24 EEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEN 103 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHC
Confidence 68999999999999999999999999999999999999999999999999999999999999999987778899999999
Q ss_pred ceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCC-CCCCCcccCCCCCC
Q 021825 82 DVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTK-TMPESNIHRGDDEI 160 (307)
Q Consensus 82 ~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~-~~p~~~~~~~~~~~ 160 (307)
++||++++|+++++.+|+|.++++|||||+|++||.+.++++.+.||||||+|+|||+.++.... ++|.+..|.+..
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~-- 181 (339)
T cd06604 104 DYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDG-- 181 (339)
T ss_pred CeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCCccceeeCCC--
Confidence 99999999999999999999999999999999999999999999999999999999998865443 367777665421
Q ss_pred CCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCCCc
Q 021825 161 GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPF 240 (307)
Q Consensus 161 ~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~p~ 240 (307)
+...+.++||+|++++++++++++++..+++|+|+++||+++|+|||+++|+||+.++|++||.+|+++|++|++|+|+
T Consensus 182 -~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~ssW~~L~~~i~~~l~~~l~G~~~ 260 (339)
T cd06604 182 -GGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGIQRYAAVWTGDNRSSWEHLRLSIPMLLNLGLSGVPF 260 (339)
T ss_pred -CCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccccccccccCCcccCCHHHHHHHHHHHHHHHhcCCcc
Confidence 1235788999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 241 SGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 241 ~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
+|+|||||.+++++|||+||+|+|+|+|+||+|+..+..+++||.|++++++++|+++ ++||+||+
T Consensus 261 ~g~DIGGf~~~~~~EL~~RW~Q~g~f~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~LlPY~ysl 331 (339)
T cd06604 261 VGADIGGFGGDPSPELLVRWMQLGAFFPFFRNHSAKGTRDQEPWAFGEEVEEIAREAIKLRYRLLPYLYTL 331 (339)
T ss_pred cccccCCCCCCCCHHHHHHHHHHHhccchhhccCCCCCCCCCCeecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877789999999999999999998 67888886
No 3
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=100.00 E-value=7.3e-82 Score=577.28 Aligned_cols=280 Identities=42% Similarity=0.846 Sum_probs=267.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
++|+++++++|+++||+|+||||++|++++++|+||+++||||++|+++||++|+|+++|++|+|..++.+..|.++.++
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 24 DKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 68999999999999999999999999999999999999999999999999999999999999999987777889999999
Q ss_pred ceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCCCcccCCCCCCCCCCcccCCCCCC
Q 021825 82 DVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEI 160 (307)
Q Consensus 82 ~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~~ 160 (307)
++|+++.+|+++++.+|||.++++|||||+|++||.+++++++ +.||||||+|+|||+.+
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~------------------- 164 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDF------------------- 164 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccH-------------------
Confidence 9999999999999999999999999999999999999999987 89999999999998642
Q ss_pred CCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCCCc
Q 021825 161 GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPF 240 (307)
Q Consensus 161 ~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~p~ 240 (307)
.++||+|++++++++++++++..+++|+|+++||+++|+|||+++|+||+.++|+.|+.+|+++|++|++|+||
T Consensus 165 ------~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~l~~gl~G~p~ 238 (317)
T cd06600 165 ------EKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGSQKYAAIWTGDNTASWDDLKLSIPLVLGLSISGIPF 238 (317)
T ss_pred ------HHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccccCCccceECCcccccHHHHHHHHHHHHHHHhcCCCc
Confidence 35799999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 241 SGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 241 ~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
+|+|||||.+++++|||+||+|+|||+|+||+|+.....++|||.|++++++++|+++ ++||+|||
T Consensus 239 ~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~LlPYlytl 309 (317)
T cd06600 239 VGCDIGGFQGDNSMELLVRWYQLGAFFPFYRSHKATDGKDTEPVFFPDYYKEKVREIVELRYKLLPYLYTL 309 (317)
T ss_pred cCcccCCCCCCCCHHHHHHHHHHhhcCceeeccCCCCCCCCCCeecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876678999999999999999998 67888986
No 4
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.8e-81 Score=580.20 Aligned_cols=299 Identities=45% Similarity=0.867 Sum_probs=279.9
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
+||+++++++|+++||||+|+||++|+.+.++|+||+++||||++|+++||++|+|+++|++|+|..++++.+|+++.++
T Consensus 24 ~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~ 103 (339)
T cd06603 24 EDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDK 103 (339)
T ss_pred HHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHC
Confidence 68999999999999999999999999999999999999999999999999999999999999999987777899999999
Q ss_pred ceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh---cCccEEEecCCCCcccCCCCCCCCCCcccCCCC
Q 021825 82 DVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY---NGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDD 158 (307)
Q Consensus 82 ~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~---~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~ 158 (307)
+++|++.+|.++++.+|||.+++||||||+|++||.+++++++. .|++|||+|++||+.|+..+.++|.+..+.+.
T Consensus 104 g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~- 182 (339)
T cd06603 104 GYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGG- 182 (339)
T ss_pred CeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCCcCCCcceecCC-
Confidence 99999999999999999999999999999999999999998763 68999999999999988777778877666431
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHhhcC-CCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccC
Q 021825 159 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 237 (307)
Q Consensus 159 ~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~-~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G 237 (307)
..+..+||+|++++++++++++++..+ ++|+|+++||+++|+|||+++|+||+.++|+.|+.+|+++|++|++|
T Consensus 183 -----~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~L~~~l~G 257 (339)
T cd06603 183 -----IEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGSQRYAAIWTGDNTATWEHLKISIPMLLSLNICG 257 (339)
T ss_pred -----CcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccccceeeeeCCCccCCHHHHHHHHHHHHHHhhcC
Confidence 256789999999999999999998764 68999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 238 QPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 238 ~p~~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
+|+||+|||||.+++++|||+||+|+|||+|+||+|+..+...++||.|++++++++|+++ ++||+||+
T Consensus 258 ~~~~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~LlPYlys~ 331 (339)
T cd06603 258 IPFCGADVGGFFGNPDEELLVRWYQAGAFYPFFRAHAHIDTKRREPWLFGEEYTSIIREAIRLRYALLPYWYTL 331 (339)
T ss_pred ccccCCccCCcCCCCCHHHHHHHHHHhhcCceeecCCCCCCCCCCCeecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876678999999999999999998 67788886
No 5
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=3.9e-79 Score=559.55 Aligned_cols=284 Identities=32% Similarity=0.597 Sum_probs=261.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC------CcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD------GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVY 75 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~------~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~ 75 (307)
++|+++++++|+++||||+|+||++|++ .+++|+||+++||||++|+++||++|+|+++|++|+|..++ ..|
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~--~~y 101 (317)
T cd06598 24 QEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNS--KNW 101 (317)
T ss_pred HHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCc--hhH
Confidence 6899999999999999999999999986 46789999999999999999999999999999999999866 478
Q ss_pred cccccccee-EEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCccc
Q 021825 76 DSGSKIDVW-IQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIH 154 (307)
Q Consensus 76 ~~~~~~~~~-~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~ 154 (307)
+++.+++++ ++..+|+++++.+|+|.+++||||||+|++||.+.++++.+.||||||+|+|||+.+ |.+..+
T Consensus 102 ~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~-------~~~~~~ 174 (317)
T cd06598 102 GEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVH-------PPDMCH 174 (317)
T ss_pred HHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCcccc-------CCcccc
Confidence 999999995 455678899999999999999999999999999999999899999999999999864 333322
Q ss_pred CCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-eecCCCCCCchHHHHHHHHHHHh
Q 021825 155 RGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWEHLHMSISMVLQL 233 (307)
Q Consensus 155 ~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~-~w~GD~~s~W~~L~~~i~~~l~~ 233 (307)
.+ + .+.++||+|+.++++++++++++..+++|+|+++||+++|+|||++ +|+||+.++|++|+.+|+++|++
T Consensus 175 ~~-----g--~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gsqry~~~~WsGD~~s~W~~L~~~i~~~l~~ 247 (317)
T cd06598 175 HK-----G--KAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGSQRYGVIPWSGDVGRTWDGLKSQPNAALQM 247 (317)
T ss_pred CC-----C--cHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCccccCcCCccCCCCcCCHHHHHHHHHHHHhh
Confidence 21 1 3567999999999999999999888889999999999999999985 89999999999999999999999
Q ss_pred cccCCCcccccCCCCCCC--CChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHhh
Q 021825 234 GLSGQPFSGPDIGGFDGN--ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 302 (307)
Q Consensus 234 ~l~G~p~~g~DigGf~~~--~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i~l~~ 302 (307)
|++|+||||+|||||.++ +++|||+||+|+|+|+|+||+|+..+ .++|||.|++++++++|++|+|||
T Consensus 248 ~l~G~~~~g~DIGGf~~~~~~~~EL~~RW~q~g~f~P~~R~H~~~~-~~~ePw~~~~~~~~~~r~~~~lRY 317 (317)
T cd06598 248 SMSGIDYYHSDIGGFAGGDELDPELYTRWFQYGAFDPPFRPHAQNA-IPPEPVFYSIGTKNINRENIRLRY 317 (317)
T ss_pred hccCCcccCCCcCCcCCCCCCCHHHHHHHHHhccCCcccccCCCCC-CCCCCCcCChHHHHHHHHHHHhhC
Confidence 999999999999999997 89999999999999999999999875 478999999999999999999998
No 6
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=100.00 E-value=7e-79 Score=561.71 Aligned_cols=279 Identities=43% Similarity=0.838 Sum_probs=264.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCCh--HHHHHHHHHCCCeEEeecCCccccC---CCccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDP--KSLAADLHLNGFKAIWMLDPGIKHE---DGYFVYD 76 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~--~~~~~~l~~~G~k~~~~~~P~i~~~---~~~~~~~ 76 (307)
++|+++++++|+++||||+|++|++|++++++|+||+++|||| ++|+++||++|+|+++|++|+|..+ +.|.+|+
T Consensus 24 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~ 103 (339)
T cd06602 24 DEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYD 103 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHH
Confidence 6899999999999999999999999999999999999999999 9999999999999999999999876 4678899
Q ss_pred cccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-cCccEEEecCCCCcccCCCCCCCCCCcccC
Q 021825 77 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAVFKSVTKTMPESNIHR 155 (307)
Q Consensus 77 ~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~ 155 (307)
++.++++||++.+|.++++.+|+|.++++|||||+|++||.++++++++ .||||||+|+|||+.+
T Consensus 104 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~-------------- 169 (339)
T cd06602 104 RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNF-------------- 169 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchH--------------
Confidence 9999999999999999999999999999999999999999999999775 7999999999998632
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcc
Q 021825 156 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGL 235 (307)
Q Consensus 156 ~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l 235 (307)
..+||+|++++++++++++++. +++|+++++||+++|+|||+++|+||+.++|+.|+.+|+++|++|+
T Consensus 170 -----------~~~hN~y~~~~~~~~~~~~~~~-~~~r~~~~sRs~~~G~qry~~~w~GD~~s~W~~L~~~i~~~l~~~~ 237 (339)
T cd06602 170 -----------YDVHNLYGLSEAIATYKALQSI-PGKRPFVISRSTFPGSGRYAGHWLGDNASTWEDLRYSIIGMLEFNL 237 (339)
T ss_pred -----------hhhcchhhHHHHHHHHHHHHhc-CCCCCEEEEecCcccccccceeECCCccCCHHHHHHHHHHHHHHHh
Confidence 2479999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 236 SGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 236 ~G~p~~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
||+||+|+|||||.+++++|||+||+|+|+|+|+||+|+..+...++||.|++++++++|+++ ++||+||+
T Consensus 238 sG~~~~~~DigGf~g~~~~EL~~RW~Q~~~f~P~~r~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~L~PYlys~ 313 (339)
T cd06602 238 FGIPMVGADICGFNGDTTEELCARWMQLGAFYPFSRNHNDIGAIPQEPYVWGPSVADAARKALNIRYSLLPYLYTL 313 (339)
T ss_pred cCCCcccCCCCCCCCCCCHHHHHHHHHHHhhCceeeccCCCCCCCcCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887778999999999999999998 67788875
No 7
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=2.6e-77 Score=546.72 Aligned_cols=280 Identities=31% Similarity=0.594 Sum_probs=262.1
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcc--eeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFR--CFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 79 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 79 (307)
++|+++++++|+++||||+|+||++|+.+.+ +|+||+++||||++|+++||++|+|+++|++|+|..++. +|+++.
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~--~~~e~~ 101 (308)
T cd06593 24 EEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSP--LFKEAA 101 (308)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCch--hHHHHH
Confidence 6899999999999999999999999998765 999999999999999999999999999999999988664 789999
Q ss_pred ccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCcc-cCCCC
Q 021825 80 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNI-HRGDD 158 (307)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~-~~~~~ 158 (307)
++++++++.+|+++.+.+|+|.++++|||||+|++||.++++++.+.||||||+|++|+. |.+.. +.|.
T Consensus 102 ~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~---------p~~~~~~~g~- 171 (308)
T cd06593 102 EKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERI---------PTDVVYYDGS- 171 (308)
T ss_pred HCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCC---------CccccccCCC-
Confidence 999999999999999999999999999999999999999999999999999999999973 43433 2221
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCC
Q 021825 159 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQ 238 (307)
Q Consensus 159 ~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~ 238 (307)
.+.++||+|+++++++++|++++..+.+|+|+++||+++|+|||+++|+||+.++|++||.+|+++|++|++|+
T Consensus 172 ------~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gsqry~~~w~GD~~s~w~~L~~~i~~~l~~~l~G~ 245 (308)
T cd06593 172 ------DGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGSQKYPVHWGGDCESTFEGMAESLRGGLSLGLSGF 245 (308)
T ss_pred ------CcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCccccccCCCEECCCcccCHHHHHHHHHHHHhccccCC
Confidence 35789999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHhh
Q 021825 239 PFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 302 (307)
Q Consensus 239 p~~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i~l~~ 302 (307)
|++|+|||||.+++++|||+||+|+|||+|+||+|+.. +++||.|++++++++|++++|||
T Consensus 246 ~~~g~DigGf~~~~~~EL~~RW~q~gaf~P~~r~h~~~---~~~Pw~~~~~~~~~~r~~~~lRy 306 (308)
T cd06593 246 GFWSHDIGGFEGTPPPDLYKRWAQFGLLSSHSRLHGSG---YREPWEYGEEAVDVVRKFAKLKY 306 (308)
T ss_pred ceecCccCCcCCCCCHHHHHHHHHhCcCCcccccCCCC---CCCCcccChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999874 89999999999999999999998
No 8
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-79 Score=573.29 Aligned_cols=299 Identities=42% Similarity=0.822 Sum_probs=284.2
Q ss_pred ChHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCccccccccc
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSK 80 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~ 80 (307)
+++|++|-.+|.+++||+|+||||+.+.++.+.||||+.+||+|++|+++|.++|.|++.+++|+|+.+++|++++++..
T Consensus 371 E~DV~~Vd~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~IvDPHIKkD~~Y~v~ke~~~ 450 (915)
T KOG1066|consen 371 EEDVLTVDQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIVDPHIKKDDGYFVHKEAKD 450 (915)
T ss_pred hhhhhhhhcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEeCcccccCCCeEEhHHhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-cCc---cEEEecCCCCcccCCCCCCCCCCcccCC
Q 021825 81 IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGV---DGIWNDMNEPAVFKSVTKTMPESNIHRG 156 (307)
Q Consensus 81 ~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~Gv---dg~w~D~~e~~~~~~~~~~~p~~~~~~~ 156 (307)
.+++||+.+|+.|.|.||||.+.+|||.||++|+||+++.. +-+ .|. -.+|.|||||+.|..++.|+|.+++|.|
T Consensus 451 ~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fa-fd~y~g~t~nl~iWNDMNEPSVFnGPEiTm~kDaiHyG 529 (915)
T KOG1066|consen 451 KGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFA-FDRYEGSTPNLFIWNDMNEPSVFNGPEITMPKDAIHYG 529 (915)
T ss_pred CCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcc-cccccCCCCceEEeccCCCccccCCCccccchhhhhcC
Confidence 99999999999999999999999999999999999999876 222 232 3689999999999999999999999986
Q ss_pred CCCCCCccccccccchhHHHHHHHHHHHHHhhcC-CCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcc
Q 021825 157 DDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGL 235 (307)
Q Consensus 157 ~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~-~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l 235 (307)
. ..|+++||+||++...+++++++++.. ..|||+||||.|+|+||++++|+||+.++|+.||-+|+++|++|+
T Consensus 530 g------~EHRdVHNiYG~~~h~aT~dGl~~R~~g~~RPFvLsRafFaGsQR~aAiWTGDN~A~W~HLkiSiPM~Lsl~i 603 (915)
T KOG1066|consen 530 G------WEHRDVHNIYGLMVHMATFDGLIARSGGKERPFVLSRAFFAGSQRTAAIWTGDNTADWDHLKISIPMVLSLGI 603 (915)
T ss_pred C------eeechhhhhhceeeeehhhhhhhhhcCCCcCceEEEeccccCccceeeeeccCCccchhhheeecceeEeccc
Confidence 4 368999999999999999999998754 699999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 236 SGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 236 ~G~p~~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
+|+||.|.|||||.|++++||++||+|.|+|+|+||.|...++..||||.|++.+.+|+|+|| +|||||||
T Consensus 604 aG~~F~GADVgGFFgNPd~ELlvRWYQ~gaf~PFFRaHAHiDTkRREPWLf~e~~~~iiRdal~~RY~lLP~wYTl 679 (915)
T KOG1066|consen 604 AGMPFVGADVGGFFGNPDPELLVRWYQTGAFQPFFRAHAHIDTKRREPWLFPEQTTQIIRDALRTRYALLPYWYTL 679 (915)
T ss_pred ccceecccccccccCCCCHHHHHHHHHhcccchhhhhhccccccccCccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 78999997
No 9
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=5.9e-77 Score=544.89 Aligned_cols=275 Identities=32% Similarity=0.620 Sum_probs=242.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
+||+++++++|+++||||+|++|++|++++++|+||+++||||++|+++||++|+|++++++|+|+.
T Consensus 24 ~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~------------- 90 (332)
T cd06601 24 SDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISY------------- 90 (332)
T ss_pred HHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceec-------------
Confidence 6899999999999999999999999999999999999999999999999999999999999999881
Q ss_pred ceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCC--CCCCCCcccCCCCC
Q 021825 82 DVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVT--KTMPESNIHRGDDE 159 (307)
Q Consensus 82 ~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~--~~~p~~~~~~~~~~ 159 (307)
+..|++.+++||||||+|++||.++++.+.+.|||+||+|+|||+.|+... .++|.+..+.....
T Consensus 91 -------------g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~ 157 (332)
T cd06601 91 -------------GGGLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSY 157 (332)
T ss_pred -------------CccCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCcc
Confidence 224667788999999999999999999999999999999999999886522 34665543321100
Q ss_pred --CCCccccccccchhHHHHHHHHHHHHHhhc--CCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcc
Q 021825 160 --IGGCQNHSYYHNVYGMLMARSTYEGMKLAD--KDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGL 235 (307)
Q Consensus 160 --~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~--~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l 235 (307)
..+...+.++||+|++++++++++++++.. +++|+||+|||+++|+|||+++|+||+.|+|+.||.+|+++|++||
T Consensus 158 ~~~~~~~~~~~~hN~Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGsqrY~~~WsGDn~stW~~L~~si~~~L~~~l 237 (332)
T cd06601 158 ENNVKRKPAIELWNLYSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGMQRFAGLWTGDNSSSWDFLQINIAQVLNLGM 237 (332)
T ss_pred ccccCCchHHHHhhhhHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCccCCcCceeCCCcccCHHHHHHHHHHHHHhhh
Confidence 001125788999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCC----------CChhHHHHHHHhhhhcccccccCCCC--CCCCCc----------------cccC
Q 021825 236 SGQPFSGPDIGGFDGN----------ATPRLFGRWMGIGAMFPFCRGHTESD--AIDHEP----------------WSFG 287 (307)
Q Consensus 236 ~G~p~~g~DigGf~~~----------~~~EL~~RW~Q~~af~P~~r~h~~~~--~~~~~P----------------w~~~ 287 (307)
||+||||+|||||.++ +++|||+||+|+|+|+|+||+|+... +..+|| |.+.
T Consensus 238 sGip~~g~DIGGF~g~~~~~~~~~~~~~~EL~~RW~Q~GaF~P~~R~H~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~ 317 (332)
T cd06601 238 SGLPIAGSDIGGFTSYDGENSIQRTWCNPELLIRWYQAGFLLPWFRNHYDRKIRQKFQEPAKYFQEPYAHLIDYEQLYLY 317 (332)
T ss_pred cCCCccCCccCCcCCCCcccccccCCCCHHHHHHHHHHhcCCceeccCCCCccCcccCCccccccccccccccccccccc
Confidence 9999999999999986 57999999999999999999999754 467777 3444
Q ss_pred hhhHHHHHHHHHHhh
Q 021825 288 EEVLFCSSIVIIAFF 302 (307)
Q Consensus 288 ~~~~~~~r~~i~l~~ 302 (307)
+++++|+|++|.|||
T Consensus 318 ~~~~~~~r~~i~~Ry 332 (332)
T cd06601 318 ENVPEICRKYVELRY 332 (332)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999998
No 10
>PRK10658 putative alpha-glucosidase; Provisional
Probab=100.00 E-value=3.1e-76 Score=581.87 Aligned_cols=286 Identities=24% Similarity=0.509 Sum_probs=265.6
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC--cceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 79 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~--~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 79 (307)
++|++++++||+++||||+|++|.+|+.. +++|+||+++||||++|+++||++|+|+++|++|+|..++ .+|+++.
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s--~~f~e~~ 360 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKS--PLFKEGK 360 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCc--hHHHHHH
Confidence 57999999999999999999999999986 5799999999999999999999999999999999998754 5899999
Q ss_pred ccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCcccCCCCC
Q 021825 80 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDE 159 (307)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~ 159 (307)
++++|+++++|+++....|+|.++++|||||+|++||.+++++++++||||||+|++|+ +|.+..+..
T Consensus 361 ~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~---------~p~d~~~~~--- 428 (665)
T PRK10658 361 EKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGER---------IPTDVVWFD--- 428 (665)
T ss_pred HCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCce---------eeccceecC---
Confidence 99999999999999999999999999999999999999999999999999999999996 344443321
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCCC
Q 021825 160 IGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQP 239 (307)
Q Consensus 160 ~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~p 239 (307)
| ..+..+||.|++++++++||++++..+.+|+++++||+++|+|||+++|+||+.++|+.|+.+|+++|++||||+|
T Consensus 429 --G-~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGsQry~~~WsGD~~stw~~l~~si~~~Ls~glsG~~ 505 (665)
T PRK10658 429 --G-SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGGQQFPVHWGGDCYSNYESMAESLRGGLSLGLSGFG 505 (665)
T ss_pred --C-CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 1 1467899999999999999999998778999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 240 FSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 240 ~~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
|||+|||||.+.+++|||+||+|+|+|+|+||+|+.. ..++||.|++++++++|+++ ++||+||+
T Consensus 506 ~~g~DIGGF~g~~~~ELy~RW~Q~g~f~P~~R~Hg~~--~~~ePW~fg~e~~~i~r~~i~lRy~LlPYlYs~ 575 (665)
T PRK10658 506 FWSHDIGGFENTATADVYKRWCAFGLLSSHSRLHGSK--SYRVPWAYDEEAVDVVRFFTKLKCRLMPYLYRE 575 (665)
T ss_pred cccCccCCCCCCCCHHHHHHHHHhcccChhhcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 46999999999999999998 67888886
No 11
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=6.7e-75 Score=532.02 Aligned_cols=281 Identities=32% Similarity=0.510 Sum_probs=250.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcc--eeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFR--CFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 79 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 79 (307)
++|+++++++|+++||||+|+||++|+.+.+ +|+||+++||||++|+++||++|+|++++++|+|..++ ..|+++.
T Consensus 24 ~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~--~~y~e~~ 101 (319)
T cd06591 24 EELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPET--ENYKEMD 101 (319)
T ss_pred HHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCC--hhHHHHH
Confidence 6899999999999999999999999998777 99999999999999999999999999999999998755 4799999
Q ss_pred ccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHH-HhhcCccEEEecCCCCcccCCCCCCCCCCcccCCCC
Q 021825 80 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDD 158 (307)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~-l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~ 158 (307)
+++++|++++|.++. .+|+|.++++|||||+|++||.+++++ +.+.||||||+|+|||+.++.... ..+..+.
T Consensus 102 ~~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~--~~~~~~~--- 175 (319)
T cd06591 102 EKGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFG--LDNYRYH--- 175 (319)
T ss_pred HCCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCccc--ccCcccC---
Confidence 999999999988776 889999999999999999999888875 568999999999999986532110 0000000
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-eecCCCCCCchHHHHHHHHHHHhcccC
Q 021825 159 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWEHLHMSISMVLQLGLSG 237 (307)
Q Consensus 159 ~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~-~w~GD~~s~W~~L~~~i~~~l~~~l~G 237 (307)
. ..+.++||+|++++++++++++++..+++|+|+++||+++|+|||++ +|+||+.|+|+.||.+|+++|++||||
T Consensus 176 -~---~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gsqry~~~~W~GD~~s~w~~L~~~i~~~l~~glsG 251 (319)
T cd06591 176 -L---GPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGSQRYGALVWSGDIDSSWETLRRQIAAGLNMGLSG 251 (319)
T ss_pred -C---CCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccccccccCceeCCCccccHHHHHHHHHHHHHHhhcC
Confidence 1 13567999999999999999999887789999999999999999985 999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCC---------hhHHHHHHHhhhhcccccccCCCCC-CCCCccccChhhHHHH
Q 021825 238 QPFSGPDIGGFDGNAT---------PRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 294 (307)
Q Consensus 238 ~p~~g~DigGf~~~~~---------~EL~~RW~Q~~af~P~~r~h~~~~~-~~~~Pw~~~~~~~~~~ 294 (307)
+||+|+|||||.++.+ +|||+||+|+|||+|+||+|+.... ..+|||.|++++++|+
T Consensus 252 ~~~~g~DiGGF~~~~~~~~~~~~~~~EL~~RW~q~gaf~P~~R~H~~~~~~~~~ePw~~g~e~~~~~ 318 (319)
T cd06591 252 IPWWTTDIGGFFVGNPPAGLDDPEYRELYVRWFQFGAFCPVMRSHGTREPREINEFWSYGEEVYDIL 318 (319)
T ss_pred CccccCCcCCcCCCCccccccCCccHHHHHHHHHHhcCccccccCCCCCCCCCCcCcCCChHHHHhh
Confidence 9999999999998755 8999999999999999999998653 3579999999999985
No 12
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-75 Score=581.14 Aligned_cols=289 Identities=43% Similarity=0.826 Sum_probs=268.7
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccc-ccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccc
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDID-YMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 79 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~-w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 79 (307)
+++|+++++.+++++||+|+|++|.+ |++.+++|+||+.+||||++|+++||++|+|+++|++|.|..++ ++|+++.
T Consensus 279 e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~--~~~~e~~ 356 (772)
T COG1501 279 EDEVLEFIDEMRERDIPLDVFVLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDS--PLFKEAI 356 (772)
T ss_pred HHHHHHHHhhcccccCcceEEEEeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCC--chHHHHH
Confidence 36899999999999999999999997 99999999999999999999999999999999999999999987 5789999
Q ss_pred ccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHH-HHHHHhhcCccEEEecCCCCcccCCCCCCCCCCcccCCCC
Q 021825 80 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS-LVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDD 158 (307)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~-~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~ 158 (307)
++|+|+++++|.++....||+.++++|||||+||+||++ ..+.+.++||||||+|+|||..++.. ..+.+
T Consensus 357 ~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~-------~~~~g-- 427 (772)
T COG1501 357 EKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGD-------GFGNG-- 427 (772)
T ss_pred HCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCcccccc-------ccccc--
Confidence 999999999999999999999999999999999999994 55678899999999999999876431 11111
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCC
Q 021825 159 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQ 238 (307)
Q Consensus 159 ~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~ 238 (307)
..+..+||+|++++++++|+++++..+++|+|+|+||+++|+|||+++|+||+.++|++||.+|+++|++||||+
T Consensus 428 -----~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsGD~~s~wd~l~~si~~~Ls~~~sGi 502 (772)
T COG1501 428 -----IDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGSQRYAAHWSGDNRSSWDSLRESIPAGLSLSLSGI 502 (772)
T ss_pred -----cCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccceeccceeCCccccchHHHHhhHHhhhchhccCC
Confidence 256789999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCC--CCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 239 PFSGPDIGGFDG--NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 239 p~~g~DigGf~~--~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
||||+|||||.| .+++|||+||+|+|+|+|+||+|+. +...|+||.|++++.+++|+++ +|||+||+
T Consensus 503 ~~wg~DiGGF~g~~~~~~EL~~RW~q~g~F~P~~R~H~~-d~~~rePW~~~e~~~~i~r~~~~lR~~LlPYiYt~ 576 (772)
T COG1501 503 PFWGHDIGGFTGGDDPTAELYIRWYQFGAFSPIFRLHGN-DNIPREPWAFGEETEEIVREYIQLRYRLLPYIYTL 576 (772)
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHHhcCchhhhhCC-CCCCCCCccCChhHHHHHHHHHHHHHccchHHHHH
Confidence 999999999999 6899999999999999999999998 4579999999999999999998 77899986
No 13
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.2e-74 Score=529.90 Aligned_cols=280 Identities=34% Similarity=0.634 Sum_probs=246.6
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC----cceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG----FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDS 77 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~----~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~ 77 (307)
++|+++++++|+++||||+|+||++|+.. +.+|+||+++||||++|+++||++|+|++++++|+|..++ ..|++
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~--~~y~e 106 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDH--PRYKE 106 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCC--HHHHH
Confidence 58999999999999999999999999865 5679999999999999999999999999999999998765 47999
Q ss_pred ccccceeEEcCCCC-ceeeeecCCCccCCCCCChHHHHHHHHHHH-HHhhcCccEEEecCCCCcccCCCCCCCCCCcccC
Q 021825 78 GSKIDVWIQKADGT-PFIGEVWPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHR 155 (307)
Q Consensus 78 ~~~~~~~~~~~~g~-~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~-~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~ 155 (307)
+.++++||++.+|+ ++++.+|+|.++++|||||+|++||.++++ .+.+.||||||+|+|||+.+ +.+..+.
T Consensus 107 ~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~-------~~~~~~~ 179 (317)
T cd06599 107 LKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIW-------DDDAVCD 179 (317)
T ss_pred HHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccC-------CCcceec
Confidence 99999999988765 678999999999999999999999999995 56689999999999999743 2222221
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcc
Q 021825 156 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGL 235 (307)
Q Consensus 156 ~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l 235 (307)
... .+ .....+||+|++++++++++++++..+++|+|+++||+++|+|||+++|+||+.++|+.|+.+|+++|++||
T Consensus 180 ~~g-~~--~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~qry~~~WsGD~~s~W~~L~~~i~~~L~~gl 256 (317)
T cd06599 180 GFG-KP--GTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAGIQRYAQTWSGDNRTSWKTLRYNIAMGLGMGL 256 (317)
T ss_pred CCC-Cc--cchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcccccCCcCeeCCCcccCHHHHHHHHHHHHhhhc
Confidence 110 11 123458999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCC-CChhHHHHHHHhhhhcccccccCCCC-CCCCCccccChhhHHHH
Q 021825 236 SGQPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRGHTESD-AIDHEPWSFGEEVLFCS 294 (307)
Q Consensus 236 ~G~p~~g~DigGf~~~-~~~EL~~RW~Q~~af~P~~r~h~~~~-~~~~~Pw~~~~~~~~~~ 294 (307)
+|+||||+|||||.++ +++|||+||+|+|+|+|+||+|+..+ ...||||.|++ +++++
T Consensus 257 sG~~~~g~DIGGF~~~~~~~ELy~RW~Q~g~F~P~~R~H~~~~~~~~~ePw~f~~-~~~~~ 316 (317)
T cd06599 257 SGVANIGHDIGGFAGPAPEPELFVRWVQNGIFQPRFCIHSWNTDNTVTEPWMYPE-VTDYI 316 (317)
T ss_pred cCCcccccccCccCCCCCCHHHHHHHHHHccCCHhhhcccCCCCCCCcCCeeccc-chhhc
Confidence 9999999999999986 79999999999999999999999754 36799999964 45544
No 14
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=100.00 E-value=2.8e-74 Score=526.51 Aligned_cols=275 Identities=25% Similarity=0.500 Sum_probs=247.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC---------cceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG---------FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGY 72 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~---------~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~ 72 (307)
++|+++++++++++||||+|+|| +|+.. +.+|+||+++||||++|+++||++|+|+++|++|+|+.++..
T Consensus 23 ~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~ 101 (317)
T cd06594 23 DKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADDGPL 101 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCch
Confidence 68999999999999999999999 78642 236899999999999999999999999999999999986543
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHH-hhcCccEEEecCCCCcccCCCCCCCCCC
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMNEPAVFKSVTKTMPES 151 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l-~~~Gvdg~w~D~~e~~~~~~~~~~~p~~ 151 (307)
.|+++.++++||++++|+++++.+|+|.+++||||||+|++||.++++++ .+.||||||+|+||+. |.+
T Consensus 102 -~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~---------p~d 171 (317)
T cd06594 102 -YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYL---------PFD 171 (317)
T ss_pred -hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCC---------CCc
Confidence 26999999999999999999999999999999999999999999999987 6899999999999963 333
Q ss_pred cccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-eecCCCCCCch---HHHHHH
Q 021825 152 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWE---HLHMSI 227 (307)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~-~w~GD~~s~W~---~L~~~i 227 (307)
..+.. | .++..+||+|++++++++++++++..+++|+|+++||+|+|+|||++ +|+||+.++|+ +||.+|
T Consensus 172 ~~~~~-----g-~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gsqry~~~~WsGD~~s~W~~~~~L~~~i 245 (317)
T cd06594 172 AVLHS-----G-EDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTGSQKYSTLFWAGDQMVSWDAHDGLKSVV 245 (317)
T ss_pred ceecC-----C-CCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccccccccccccCCCCCCCCcCcccHHHHH
Confidence 32221 1 14578999999999999999999888889999999999999999985 89999999998 699999
Q ss_pred HHHHHhcccCCCcccccCCCCCC----CCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHH
Q 021825 228 SMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFC 293 (307)
Q Consensus 228 ~~~l~~~l~G~p~~g~DigGf~~----~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~ 293 (307)
+++|++||+|+||+|+|||||.+ .+++|||+||+|+|||+|+||+|+......++||.|++++.+.
T Consensus 246 ~~~L~~~lsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~~~~~~~~~~~~~~~~~~ 315 (317)
T cd06594 246 PGALSSGLSGYALHHSDIGGYTSLNGYVRTEELLLRWAEMAAFTPVMRTHEGNRPDDNWQFYSDDETLRH 315 (317)
T ss_pred HHHhhccccCCCcccCccCCCcCCCCCCCCHHHHHHHHHHhccccceecCCCCCCCCCcccccChHHHHh
Confidence 99999999999999999999975 4799999999999999999999998877789999999887664
No 15
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=100.00 E-value=7.2e-73 Score=541.63 Aligned_cols=298 Identities=41% Similarity=0.855 Sum_probs=261.1
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCC-ccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG-YFVYDSGSK 80 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~-~~~~~~~~~ 80 (307)
++|+++++++|+++||+|++++|++|+.+.++|+||+++||||++|++.||++|+|+++|++|+|..++. +..|+++.+
T Consensus 43 ~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 43 DEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccceeccccccccccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999876 778999999
Q ss_pred cceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhc-CccEEEecCCCCcccCCCCCCCCCCcccCCCCC
Q 021825 81 IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDE 159 (307)
Q Consensus 81 ~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~-Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~ 159 (307)
+++++++++|+++++.+|+|.++++|||||++++||+++++++++. ||||||+|++||..+. ...++|.+..+.+.
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~-~~~~~~~~~~~~~~-- 199 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFD-SNNTLPEDAVHHDG-- 199 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSST-TTBSBCTTEECTTE--
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCccccc-ccccCcccceecCC--
Confidence 9999999999999999999999999999999999999999999877 9999999999998764 33344555544321
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCCC
Q 021825 160 IGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQP 239 (307)
Q Consensus 160 ~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~p 239 (307)
..+..+||.|++++++++++++++..+++|+++++||+++|+|||+++|+||+.++|++|+.+|+++|++|+||+|
T Consensus 200 ----~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~w~~L~~~i~~~l~~~~~G~~ 275 (441)
T PF01055_consen 200 ----YSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAGSQRYGGHWSGDNSSSWDGLRSSIPAMLNMGLSGYP 275 (441)
T ss_dssp ----CEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETTGGGTCEEEECSSBSSHHHHHHHHHHHHHHHCTT-S
T ss_pred ----CCchheeccccccchhhhhhhhhhccCCCCcceeecccCCCCCccceeecccccccHHHHHHHHHHHHHHhhhhcc
Confidence 1567899999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhc
Q 021825 240 FSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKL 306 (307)
Q Consensus 240 ~~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~ 306 (307)
++|+|||||.+.+++|||+||+|+|+|+|+||+|+..+...++||.|++++++++|+++ ++||+||+
T Consensus 276 ~~g~DigG~~~~~~~eL~~RW~q~~~f~p~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~lRy~L~PY~ys~ 347 (441)
T PF01055_consen 276 FWGSDIGGFSGDPDEELYIRWYQFGAFSPLFRNHGNKPSNPREPWSFGDEAEDIFRRAIRLRYRLLPYIYSL 347 (441)
T ss_dssp SEEEEET-SBSTSSHHHHHHHHHHHTTSSSEEEEESTTSSB-SGGGSSCTHHHHHHHHHHHHHHCHHHHHHH
T ss_pred eecCcccccCCCCCHHHHHHHHHhhcCCcceeecCCcccccccccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999997766667899999999999999998 67788885
No 16
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=3.3e-72 Score=517.19 Aligned_cols=274 Identities=26% Similarity=0.449 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC----------------C-----cceeeecC-CCCCChHHHHHHHHHCCCeEE
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD----------------G-----FRCFTFDK-ERFPDPKSLAADLHLNGFKAI 59 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~----------------~-----~~~f~~d~-~~FPd~~~~~~~l~~~G~k~~ 59 (307)
+||+++++++|+++||||+|+|| +|+. + +.+++|++ ++||||++||++||++|+|++
T Consensus 24 ~ev~~v~~~~~~~~iP~d~i~lD-~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~ 102 (340)
T cd06597 24 AEVMRQMDAHEEHGIPVTVVVIE-QWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKVL 102 (340)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEe-cccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEEE
Confidence 68999999999999999999998 4543 1 34566764 799999999999999999999
Q ss_pred eecCCccccCCC-----ccccccccccceeEEcCCCCceee-eecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEE
Q 021825 60 WMLDPGIKHEDG-----YFVYDSGSKIDVWIQKADGTPFIG-EVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIW 132 (307)
Q Consensus 60 ~~~~P~i~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~-~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w 132 (307)
+|++|+|..... +..|.++.++++||++.+|+++.. .+|+|.+++||||||+|++||.+++++++ +.||||||
T Consensus 103 l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w 182 (340)
T cd06597 103 LWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFK 182 (340)
T ss_pred EEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999975321 124567889999999999998874 68999999999999999999999999988 59999999
Q ss_pred ecCCCCcccCCCCCCCCCCcccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeee
Q 021825 133 NDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 212 (307)
Q Consensus 133 ~D~~e~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w 212 (307)
+|+||+. + +.+..+.. | ..+..+||+|++++++++++++++. ++|+|+++||+++|+|||+++|
T Consensus 183 ~D~~E~~-~-------~~~~~~~~-----g-~~~~~~hN~y~~~~~~~~~e~~~~~--~~r~filtRs~~~Gsqry~~~W 246 (340)
T cd06597 183 TDGGEHV-W-------GRDLHFRD-----G-RRGDEMRNTYPNHYVRAYNDFLRRA--KKDGVTFSRAGYTGAQAHGIFW 246 (340)
T ss_pred ecCCCcc-C-------CCCceecC-----C-CcHHHhhcccHHHHHHHHHHHHHhc--cCCcEEEEecccCccCCCccee
Confidence 9999975 2 22222211 1 1356799999999999999998775 6899999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHhcccCCCcccccCCCCCCC-CChhHHHHHHHhhhhcccccccCCCCC-----CCCCcccc
Q 021825 213 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRGHTESDA-----IDHEPWSF 286 (307)
Q Consensus 213 ~GD~~s~W~~L~~~i~~~l~~~l~G~p~~g~DigGf~~~-~~~EL~~RW~Q~~af~P~~r~h~~~~~-----~~~~Pw~~ 286 (307)
+||+.++|+.||.+|+++|++||+|+||+|+|||||.++ +++|||+||+|+|+|+|+||+|+..+. ..||||.|
T Consensus 247 sGD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIgGF~g~~~~~EL~~RW~Q~g~F~P~~R~H~~~~~~~~~~~~~epw~~ 326 (340)
T cd06597 247 AGDENSTFGAFRWSVFAGLSASASGIPYWGWDLAGFTGDVPTAELYVRSTAMAAFVPIMQYHSEFNGHSSPNEDRTPWNI 326 (340)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCcCCCccCCcCCCCCCHHHHHHHHHHhhcchhhhhccCCCCCCcCcCCccCCcc
Confidence 999999999999999999999999999999999999997 799999999999999999999997543 58999999
Q ss_pred ChhhHH
Q 021825 287 GEEVLF 292 (307)
Q Consensus 287 ~~~~~~ 292 (307)
++++.+
T Consensus 327 ~~~~~~ 332 (340)
T cd06597 327 AERTGE 332 (340)
T ss_pred cCcCCC
Confidence 987543
No 17
>PRK10426 alpha-glucosidase; Provisional
Probab=100.00 E-value=6.4e-71 Score=542.93 Aligned_cols=285 Identities=24% Similarity=0.458 Sum_probs=251.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC---------cceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG---------FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGY 72 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~---------~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~ 72 (307)
++|+++++++|+++||||+||+| +|+.. +.+|+||+++||||++|+++||++|+|+++|++|+|+.+ +
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~--~ 297 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASD--G 297 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCC--C
Confidence 57999999999999999999999 78642 235899999999999999999999999999999999884 4
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHH-HHhhcCccEEEecCCCCcccCCCCCCCCCC
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMNEPAVFKSVTKTMPES 151 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~-~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~ 151 (307)
.+|+++.++++|+++.+|+++++.+|++.++++|||||+|++||+++++ .+.+.||||||+|+||+ +|.+
T Consensus 298 ~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~---------~p~d 368 (635)
T PRK10426 298 DLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEY---------LPTD 368 (635)
T ss_pred HHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCC---------CCCc
Confidence 6899999999999999999999999999999999999999999999986 46789999999999995 3444
Q ss_pred cccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCccee-eecCCCCCCch---HHHHHH
Q 021825 152 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWE---HLHMSI 227 (307)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~-~w~GD~~s~W~---~L~~~i 227 (307)
..+.. | ..+..+||+|+++++++++|++++..+.+|+|+++||+|+|+|||++ +|+||+.++|+ +|+.+|
T Consensus 369 ~~~~~-----g-~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aGsQry~~~~WsGD~~ssW~~~d~L~~~I 442 (635)
T PRK10426 369 AYLHN-----G-VSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTGSQKYSTLFWAGDQNVDWSLDDGLASVV 442 (635)
T ss_pred ceeeC-----C-CCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCCcCCccccccCCCCCCcCcChhHHHHHH
Confidence 43321 1 14567999999999999999999887778999999999999999986 89999999995 899999
Q ss_pred HHHHHhcccCCCcccccCCCCCC----CCChhHHHHHHHhhhhcccccccCCCCCCCCCccccCh--hhHHHHHHH----
Q 021825 228 SMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGE--EVLFCSSIV---- 297 (307)
Q Consensus 228 ~~~l~~~l~G~p~~g~DigGf~~----~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~--~~~~~~r~~---- 297 (307)
+++|++||||+||||+|||||.+ .+++|||+||+|+|||+|+||+|+.. .+++||.|+. ++.+.++++
T Consensus 443 ~~~Ls~glsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~--~~~epw~f~~~~~~~~~~~~~~~lR 520 (635)
T PRK10426 443 PAALSLGMSGHGLHHSDIGGYTTLFGMKRTKELLLRWCEFSAFTPVMRTHEGN--RPGDNWQFDSDAETIAHFARMTRVF 520 (635)
T ss_pred HHHHHHHhcCcCccccccCCCcCcCCCCCCHHHHHHHHHHhcCCceeecCCCC--CCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999974 47999999999999999999999864 5799999964 444555544
Q ss_pred -HHHhhhhhc
Q 021825 298 -IIAFFWFKL 306 (307)
Q Consensus 298 -i~l~~~~~~ 306 (307)
-++||+||+
T Consensus 521 y~LlPYlytl 530 (635)
T PRK10426 521 TTLKPYLKEL 530 (635)
T ss_pred HHHHHHHHHH
Confidence 478899986
No 18
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=2e-68 Score=485.89 Aligned_cols=261 Identities=24% Similarity=0.433 Sum_probs=236.4
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
++|+++++++++++||+|+|+||++|+..+++|+||+++||||++|+++||++|+|+++|++|+|..++ ..|+++.++
T Consensus 30 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s--~~~~e~~~~ 107 (303)
T cd06592 30 ETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS--ENFREAVEK 107 (303)
T ss_pred HHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC--HHHHhhhhC
Confidence 689999999999999999999999999999999999999999999999999999999999999998866 468999999
Q ss_pred ceeEEcCCC-CceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCCCcccCCCCCCCCCCcccCCCCC
Q 021825 82 DVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDE 159 (307)
Q Consensus 82 ~~~~~~~~g-~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~ 159 (307)
++||++++| .++++.+|+|.++++|||||+|++||.+++++++ ++||||||+|+|||.. +|.+..+.
T Consensus 108 g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~-------~p~~~~~~---- 176 (303)
T cd06592 108 GYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASY-------LPQDYVTE---- 176 (303)
T ss_pred CeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCccc-------CCcccccC----
Confidence 999999988 7888999999999999999999999999999988 8999999999999974 34443322
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHH---HHHHHHHHHhccc
Q 021825 160 IGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHL---HMSISMVLQLGLS 236 (307)
Q Consensus 160 ~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L---~~~i~~~l~~~l~ 236 (307)
.+..+||.|..++++++++ .++++++||+|+|+|+++.+|+||+.++|+.+ +.+|+++|++|||
T Consensus 177 -----~~~~~~n~y~~~~~~~~~~--------~~~~~~~Rsg~~g~~~~~~~w~GD~~s~W~~~~gl~~~i~~~L~~~ls 243 (303)
T cd06592 177 -----DPLLNPDEYTRLYAEMVAE--------FGDLIEVRAGWRSQGLPLFVRMMDKDSSWGGDNGLKSLIPTALTMGLL 243 (303)
T ss_pred -----CcccCHHHHHHHHHHHHHh--------hccceEEEeeeecCCCCeeEEcCCCCCCCCCCcCHHHHHHHHHHhhcc
Confidence 1245799999999887653 13899999999998888889999999999976 9999999999999
Q ss_pred CCCccccc-CCCCCC-------CCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHH
Q 021825 237 GQPFSGPD-IGGFDG-------NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 295 (307)
Q Consensus 237 G~p~~g~D-igGf~~-------~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r 295 (307)
|+|||++| ||||.+ .+++|||+||+|+|+|+|+||+| ++||.|++++++++|
T Consensus 244 G~~~w~~D~iGGf~~~~~~~~~~~~~EL~~RW~q~g~f~P~~R~h-------~~PW~~~~e~~~~~~ 303 (303)
T cd06592 244 GYPFVLPDMIGGNAYGGNSDDELPDKELYIRWLQLSAFLPVMQFS-------IAPWQYDDEVVEIAK 303 (303)
T ss_pred CCcccCCCccCCccccccccCCCCCHHHHHHHHHHHHhChhhhcc-------cCCccCCHHHHHhhC
Confidence 99999999 899975 36899999999999999999999 589999999999875
No 19
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=5.6e-68 Score=480.58 Aligned_cols=254 Identities=24% Similarity=0.423 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC---------CcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD---------GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGY 72 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~---------~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~ 72 (307)
++|+++++++|+++||||+|+||++|+. ++++|+||+++||||++|+++||++|+|+++|++|+|+.+..+
T Consensus 25 ~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~ 104 (292)
T cd06595 25 EEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHE 104 (292)
T ss_pred HHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCc
Confidence 6899999999999999999999999964 5679999999999999999999999999999999998765544
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHH-HHhhcCccEEEecCCCCcccCCCCCCCCCC
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMNEPAVFKSVTKTMPES 151 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~-~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~ 151 (307)
..|++.+. +..+... .+...++|||||++++||.+.++ .+.+.||||||+|+|||+.+..
T Consensus 105 ~~y~~~~~-~~~~~~~----------~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~-------- 165 (292)
T cd06595 105 DQYPEMAK-ALGVDPA----------TEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRT-------- 165 (292)
T ss_pred HHHHHHHH-hcCCCcc----------cCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCccccc--------
Confidence 45654211 1111111 11235789999999998766664 5668999999999999865310
Q ss_pred cccCCCCCCCCccccccccchhHHH-HHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHH
Q 021825 152 NIHRGDDEIGGCQNHSYYHNVYGML-MARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMV 230 (307)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~hn~y~~~-~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~ 230 (307)
+|.++.. +++..|+..++ +++|+|+++||+++|+|||+++|+||+.|+|+.|+.+|+.+
T Consensus 166 ------------------~~~~~~~~~~~~~y~~~~~--~~~r~f~lsRs~~~G~qry~~~WsGD~~s~W~~l~~~i~~~ 225 (292)
T cd06595 166 ------------------PGLDPLWWLNHVHYLDSAR--NGRRPLIFSRWAGLGSHRYPIGFSGDTIISWASLAFQPYFT 225 (292)
T ss_pred ------------------CCcchHHHHHHHHHHHhhc--cCCCcEEEEeecccCCCcCCCccCCCcccCHHHHHHHHHHH
Confidence 1112121 13334555443 67899999999999999999999999999999999999999
Q ss_pred HHhcccCCCcccccCCCCCC-CCChhHHHHHHHhhhhcccccccCCCCC-CCCCccccChhhHHHH
Q 021825 231 LQLGLSGQPFSGPDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 294 (307)
Q Consensus 231 l~~~l~G~p~~g~DigGf~~-~~~~EL~~RW~Q~~af~P~~r~h~~~~~-~~~~Pw~~~~~~~~~~ 294 (307)
|++|++|+||||+|||||.+ .+++|||+||+|+|+|+|+||+|+.... .+||||.|++++++|+
T Consensus 226 l~~~~sG~p~~g~DiGGF~~~~~~~ELy~RW~Q~gaf~P~~R~H~~~~~~~~~ePW~~g~~~~~~~ 291 (292)
T cd06595 226 ATASNIGYGYWSHDIGGHMLGVTDPELYTRWIQFGVFSPILRLHSTKNPFNEKEPWLYEEEASKIM 291 (292)
T ss_pred HHHHhcCCCcCCCccCCCCCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCccCcccCcHHHHhh
Confidence 99999999999999999999 6999999999999999999999998654 5899999999999886
No 20
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=100.00 E-value=1.5e-65 Score=459.30 Aligned_cols=238 Identities=42% Similarity=0.809 Sum_probs=217.8
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCccee--eecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCF--TFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGS 79 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f--~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~ 79 (307)
++|+++++++|+++||+|+|+||++|+.+.++| +||+++||||++|+++||++|+|+++|++|+|
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v------------- 90 (265)
T cd06589 24 DKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI------------- 90 (265)
T ss_pred HHHHHHHHHHHHcCCCccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH-------------
Confidence 689999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred ccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHH-hhcCccEEEecCCCCcccCCCCCCCCCCcccCCCC
Q 021825 80 KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDD 158 (307)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l-~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~ 158 (307)
++||.++++++ .+.||||||+|+|||..++... ...+
T Consensus 91 ---------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~-------~~~~-- 128 (265)
T cd06589 91 ---------------------------------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNI-------FTGG-- 128 (265)
T ss_pred ---------------------------------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCcc-------ccCC--
Confidence 88999999987 6899999999999998653211 0010
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCC
Q 021825 159 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQ 238 (307)
Q Consensus 159 ~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~ 238 (307)
..+...+.++||+|+.++++++++++++..+++|+++++||+++|+|||+.+|+||+.++|+.||.+|+++|++|++|+
T Consensus 129 -~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gsqry~~~W~GD~~stW~~l~~~i~~~l~~~l~G~ 207 (265)
T cd06589 129 -VVGRVKHEEMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGSQRYAGMWSGDNTSTWGYLRSQIPAGLTMSMSGI 207 (265)
T ss_pred -cCCCccHHHHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccccCcCceeCCcccCCHHHHHHHHHHHHhhhccCC
Confidence 0012356789999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCC-CCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHH
Q 021825 239 PFSGPDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 295 (307)
Q Consensus 239 p~~g~DigGf~~-~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r 295 (307)
|++|+|||||.+ ++++|||+||+|+|+|+|+||+|+......+|||.|++++++++|
T Consensus 208 ~~~g~DigGf~~~~~~~EL~~RW~Q~g~F~P~~R~H~~~~~~~~epw~~~~~~~~~~r 265 (265)
T cd06589 208 PFVGSDIGGFTGGDPSAELYVRWFQFGAFTPIMRFHSWNSPKDTEPWAFDEEVTAIIR 265 (265)
T ss_pred cccCCCcCCCCCCCCCHHHHHHHHHHhcCCcceecCCCCCCCCcCCCCcCHHHHHhhC
Confidence 999999999999 799999999999999999999999987778999999999998875
No 21
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-63 Score=480.89 Aligned_cols=297 Identities=41% Similarity=0.768 Sum_probs=269.9
Q ss_pred ChHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCccccccccc
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSK 80 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~ 80 (307)
+++++++++++++++||+|++|+|++||++++|||+|+.+||+++++++.||++|+|++++++|+|+.++.|..|+++.+
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~ 389 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVA 389 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred cceeEEcCCCCc-eeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-cCccEEEecCCCCcccCCCCCCCCCCc-ccCCC
Q 021825 81 IDVWIQKADGTP-FIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAVFKSVTKTMPESN-IHRGD 157 (307)
Q Consensus 81 ~~~~~~~~~g~~-~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~~e~~~~~~~~~~~p~~~-~~~~~ 157 (307)
+++++++.+|++ +++.+|||..+|+||+||++.+||.++++.+.+ .++||+|+|+||++.|+.. |... ...++
T Consensus 390 ~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~p----p~~~~~~~~~ 465 (805)
T KOG1065|consen 390 KDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNEPSNFPSP----PINPTLDNGD 465 (805)
T ss_pred hceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCCcccCCCC----Cccccccccc
Confidence 999999999988 899999999999999999999999999999885 7999999999999998742 1111 11111
Q ss_pred CCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccC
Q 021825 158 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 237 (307)
Q Consensus 158 ~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G 237 (307)
+.. ..++.||+|++..+.+++.++.++. ++|+++++||+|+|+.||++||.||+.++|+.|+.+|+.||.++|+|
T Consensus 466 --~~~--~tyd~~~lyg~~~aiat~~a~~~v~-~kr~~i~srsTf~g~g~y~~hwlgdn~~~w~~L~~sI~gml~fnl~G 540 (805)
T KOG1065|consen 466 --LYA--KTYDTHNLYGYSEAIATHQALVDVP-GKRSFILSRSTFVGSGRYAGHWLGDNTARWEDLQTSISGMLEFNLFG 540 (805)
T ss_pred --ccc--cchhhhhhHhHHHhhhhhccceecc-ccccccccccceecccccceeecccccceehhccccchhhhcccccC
Confidence 100 1156899999999999999988876 89999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHH-----HHhhhhhcC
Q 021825 238 QPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVI-----IAFFWFKLE 307 (307)
Q Consensus 238 ~p~~g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i-----~l~~~~~~~ 307 (307)
+|++|+|||||.+.+++|||.||+|+|||+|+||+|......++||..++. +.+.+|+++ .|||+|||+
T Consensus 541 ip~Vg~Dicgf~~~~~eELc~RW~q~gaF~Pf~R~hn~~~~~~qe~~~~~s-v~~a~r~~~~~ry~~lP~lytl~ 614 (805)
T KOG1065|consen 541 IPMVGSDICGFLGPPTEELCLRWLQLGAFYPFSRNHNSPGEPRQEPYTWSS-VAEAARNALTLRYTLLPYLYTLF 614 (805)
T ss_pred CCccchhhhcCCCCCCHHHHHHHHHhccCCchhhccCCCCCcccChhhHHH-HHHHHHHhhhheeeehhhHHHhh
Confidence 999999999999999999999999999999999999998889999999976 777777776 788888874
No 22
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=2.8e-47 Score=330.06 Aligned_cols=210 Identities=25% Similarity=0.413 Sum_probs=181.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
..+++++++|+++++|+..|.-+++|..++ -+++++++.++++|++..+|.. ++
T Consensus 45 ~~a~~~~~~y~~~~~plgw~lpndgyg~~y----------~~l~~~~~~~~~~g~~~glwt~------~~---------- 98 (261)
T cd06596 45 DDARKVADKYKENDMPLGWMLPNDGYGCGY----------ENLKEVVDYLHANGVETGLWTQ------SG---------- 98 (261)
T ss_pred hhHHHHHHHHHhcCCCceeeccCCCCcchH----------HHHHHHHHHHHHcCCccccccc------cc----------
Confidence 357899999999999999999999996444 6799999999999999999832 11
Q ss_pred ceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCcccCCCCCCC
Q 021825 82 DVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 161 (307)
Q Consensus 82 ~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~~~ 161 (307)
+ .+.-++....|+...|+|-.--
T Consensus 99 -----------------------l-----------~~~~~ev~~~g~~~~k~Dv~w~----------------------- 121 (261)
T cd06596 99 -----------------------L-----------RDIAKEVGAAGVRARKTDVAWV----------------------- 121 (261)
T ss_pred -----------------------h-----------hhhhhhhccCCceEEeccchhh-----------------------
Confidence 0 1122333456889999996421
Q ss_pred CccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcceeeecCCCCCCchHHHHHHHHHHHhcccCCCcc
Q 021825 162 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFS 241 (307)
Q Consensus 162 ~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~W~~L~~~i~~~l~~~l~G~p~~ 241 (307)
-..-.|++.+++++|+++++. +++|||+++||+|+|+|||+++|+||+.++|+.||.+|+++|++||||+|||
T Consensus 122 ------g~gy~~~l~~~ka~yeg~~~~-~~~RpfiltRsg~aGsQRy~~~WsGD~~stWe~Lr~sI~~~L~~gLsG~p~~ 194 (261)
T cd06596 122 ------GAGYSFALNGVKAAADGIESN-SNARPFIVTVDGWAGTQRYAGIWTGDQSGSWEYIRFHIPTYIGSGLSGQPNT 194 (261)
T ss_pred ------ccchhHHHHHHHHHHHHHHhC-CCCCCEEEEecCccccCCCCCccCCCCcCcHHHHHHHHHHHHHHHhcCCCcC
Confidence 023467888999999999876 7899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHhh
Q 021825 242 GPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 302 (307)
Q Consensus 242 g~DigGf~~~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i~l~~ 302 (307)
|+|||||.++ ++|||+||+|+|+|+|+||+|+..+..+||||.|++++++|+|++|.|||
T Consensus 195 G~DIGGF~g~-~~EL~vRW~Q~gaF~P~~R~h~~~~~~~rEPW~fge~~~~i~R~~l~LRY 254 (261)
T cd06596 195 TSDVDGIFGG-SPETYTRDLQWKAFTPVLMTMSGWAANDKQPWVFGEPYTSINRDYLKLKM 254 (261)
T ss_pred ccccCcCCCC-CHHHHHHHHHHHHhhhhhhhccCCCCCCCCCeeCCHHHHHHHHHHHHHHH
Confidence 9999999988 99999999999999999999988777899999999999999999996554
No 23
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.73 E-value=6.5e-17 Score=151.32 Aligned_cols=127 Identities=21% Similarity=0.299 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC-------CcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccc-cCCCc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD-------GFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIK-HEDGY 72 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~-------~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~-~~~~~ 72 (307)
++|++.++.+++.| ++.|+||++|+. ..|+|..|+++||+ ++.+++.+|++|+|+++|+.|.+. .++
T Consensus 58 ~~i~~~a~~~~~~G--~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S-- 133 (394)
T PF02065_consen 58 EKILELADAAAELG--YEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDS-- 133 (394)
T ss_dssp HHHHHHHHHHHHHT---SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSS--
T ss_pred HHHHHHHHHHHHhC--CEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchh--
Confidence 67889999997765 578999999984 35899999999999 999999999999999999999664 444
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCCC
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 138 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e~ 138 (307)
.+|. .+.++.++.++..+.. .....++|+++|++++|..+.+.+++ +.|||++|+|+|..
T Consensus 134 ~l~~--~hPdw~l~~~~~~~~~----~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 134 DLYR--EHPDWVLRDPGRPPTL----GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRD 194 (394)
T ss_dssp CHCC--SSBGGBTCCTTSE-EC----BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-
T ss_pred HHHH--hCccceeecCCCCCcC----cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccC
Confidence 3554 2455655544322211 12345799999999999999998865 79999999999964
No 24
>PLN03231 putative alpha-galactosidase; Provisional
Probab=99.43 E-value=1.6e-11 Score=112.89 Aligned_cols=194 Identities=15% Similarity=0.105 Sum_probs=123.4
Q ss_pred ChHHHHHHHHHHHcC---CCcceEEecccccC--------------------CcceeeecCCCCCC------hHHHHHHH
Q 021825 1 MILIREFVRTFREKG---IPCDVIWMDIDYMD--------------------GFRCFTFDKERFPD------PKSLAADL 51 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~---iP~d~i~lD~~w~~--------------------~~~~f~~d~~~FPd------~~~~~~~l 51 (307)
|++|++.++ +.+.+ ...+-|+||+.|+. ..+.+..|++|||+ +|.+++.+
T Consensus 17 E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyv 95 (357)
T PLN03231 17 EEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKV 95 (357)
T ss_pred HHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHH
Confidence 467888887 55644 56788999999973 24668899999996 99999999
Q ss_pred HHCCCeEEeecCCccccCC---CccccccccccceeE--EcCCCCceeeeecC-CCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 52 HLNGFKAIWMLDPGIKHED---GYFVYDSGSKIDVWI--QKADGTPFIGEVWP-GPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 52 ~~~G~k~~~~~~P~i~~~~---~~~~~~~~~~~~~~~--~~~~g~~~~~~~w~-g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
|++|+|+.+.+.|.+.+.. .+++.-..-..+.-. ++. ..+-..-.|. ....-+|..+|.|++|+.+..+.+.+
T Consensus 96 Hs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Di-a~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~ 174 (357)
T PLN03231 96 HALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDI-ALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYAS 174 (357)
T ss_pred HhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhh-ccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 9999999999998876532 111110000000000 000 0000011122 22235899999999999999998989
Q ss_pred cCccEEEecCCCCcccCCCCCCCCCCcccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCC
Q 021825 126 NGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS 205 (307)
Q Consensus 126 ~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~ 205 (307)
+|||++|.|.+.+.. . . ....|. ++.+++++ ..||++++-+-..+.
T Consensus 175 WGVDylK~D~c~~~~----------~-~---------------~~~~y~-----~m~~AL~~---tGRpIv~Slc~g~~~ 220 (357)
T PLN03231 175 WGIDFIKHDCVFGAE----------N-P---------------QLDEIL-----TVSKAIRN---SGRPMIYSLSPGDGA 220 (357)
T ss_pred hCCCEEeecccCCCC----------c-c---------------cHHHHH-----HHHHHHHH---hCCCeEEEecCCCCC
Confidence 999999999653210 0 0 011232 34555654 368999987631110
Q ss_pred --------Ccceeee--cCCCCCCchHHHHHHHHH
Q 021825 206 --------QRYAATW--TGDNVSNWEHLHMSISMV 230 (307)
Q Consensus 206 --------qr~~~~w--~GD~~s~W~~L~~~i~~~ 230 (307)
+.++..| +||...+|+.+...+...
T Consensus 221 ~~~~~~~i~~~an~WR~s~DI~d~W~~v~~~~~~~ 255 (357)
T PLN03231 221 TPGLAARVAQLVNMYRVTGDDWDDWKYLVKHFDVA 255 (357)
T ss_pred CchhhhhhhhhcCcccccCCcccchhhHHHHHHHH
Confidence 2234466 799999999988777655
No 25
>PLN02229 alpha-galactosidase
Probab=99.27 E-value=3.1e-10 Score=106.39 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=108.1
Q ss_pred ChHHHHHHHHHHHcC---CCcceEEecccccCC----cceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccccCCCc
Q 021825 1 MILIREFVRTFREKG---IPCDVIWMDIDYMDG----FRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGY 72 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~---iP~d~i~lD~~w~~~----~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~ 72 (307)
+++|++.++.+.+.| ..++-|.||++|+.. .+.+..|++|||+ ++.+++.+|++|+|++++..+.+.+...|
T Consensus 79 E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~ 158 (427)
T PLN02229 79 ETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQVR 158 (427)
T ss_pred HHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCCC
Confidence 467888999887655 448889999999743 5779999999998 99999999999999999998876643321
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCc
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESN 152 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~ 152 (307)
||. .++. .+-.+.+.++|||++|.|.+....
T Consensus 159 --------------------------pGS---~g~e--------~~DA~~fA~WGVDylK~D~C~~~~------------ 189 (427)
T PLN02229 159 --------------------------PGS---LFHE--------VDDADIFASWGVDYLKYDNCYNLG------------ 189 (427)
T ss_pred --------------------------CCC---ccHH--------HHHHHHHHHcCCCEEEecCCCCCC------------
Confidence 111 1111 112344558999999999873210
Q ss_pred ccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCC------Ccceeee--cCCCCCCchHHH
Q 021825 153 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWEHLH 224 (307)
Q Consensus 153 ~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~------qr~~~~w--~GD~~s~W~~L~ 224 (307)
......|+. +.+++++ ..||++++=+.|.-. ..++..| +||...+|+.+.
T Consensus 190 --------------~~~~~~y~~-----m~~AL~~---tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv~ 247 (427)
T PLN02229 190 --------------IKPIERYPP-----MRDALNA---TGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASMT 247 (427)
T ss_pred --------------cchhHHHHH-----HHHHHHh---hCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccHH
Confidence 001223432 3445543 468988874443211 2345566 799999999988
Q ss_pred HHHHHHH
Q 021825 225 MSISMVL 231 (307)
Q Consensus 225 ~~i~~~l 231 (307)
..+...-
T Consensus 248 ~i~~~~~ 254 (427)
T PLN02229 248 TIADLNN 254 (427)
T ss_pred HHHHHHH
Confidence 7775443
No 26
>PLN02692 alpha-galactosidase
Probab=99.26 E-value=6.6e-10 Score=103.75 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=111.7
Q ss_pred ChHHHHHHHHHHHcCC---CcceEEecccccC----CcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccccCCCc
Q 021825 1 MILIREFVRTFREKGI---PCDVIWMDIDYMD----GFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGY 72 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~i---P~d~i~lD~~w~~----~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~ 72 (307)
++.|++.++.+.+.++ .++-|.||++|+. ..+.+..|+++||+ ++.+++.+|++|+|++++..+...+...
T Consensus 72 E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~- 150 (412)
T PLN02692 72 EKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSK- 150 (412)
T ss_pred HHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccCC-
Confidence 4678888998877654 5899999999984 35779999999998 9999999999999999998765322110
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCc
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESN 152 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~ 152 (307)
+.|.+..+..+-.+.+.++|||++|.|.+-... .
T Consensus 151 -----------------------------------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~----------~- 184 (412)
T PLN02692 151 -----------------------------------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDG----------S- 184 (412)
T ss_pred -----------------------------------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCC----------c-
Confidence 124445666666677778999999999873210 0
Q ss_pred ccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCC------Ccceeee--cCCCCCCchHHH
Q 021825 153 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWEHLH 224 (307)
Q Consensus 153 ~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~------qr~~~~w--~GD~~s~W~~L~ 224 (307)
.....|. ++.+++++ ..||++++-+.+.-. ..++..| +||...+|+.+.
T Consensus 185 ---------------~~~~~y~-----~m~~AL~~---tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~ 241 (412)
T PLN02692 185 ---------------KPTVRYP-----VMTRALMK---AGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMI 241 (412)
T ss_pred ---------------chhHHHH-----HHHHHHHH---hCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhHH
Confidence 0012333 23445554 358999875443222 2334566 799999999888
Q ss_pred HHHHHHH
Q 021825 225 MSISMVL 231 (307)
Q Consensus 225 ~~i~~~l 231 (307)
..+....
T Consensus 242 ~~~~~~~ 248 (412)
T PLN02692 242 SRADMNE 248 (412)
T ss_pred HHHHHHH
Confidence 7775443
No 27
>PLN02808 alpha-galactosidase
Probab=99.23 E-value=1.2e-09 Score=101.75 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=111.2
Q ss_pred ChHHHHHHHHHHHcC---CCcceEEecccccC----CcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccccCCCc
Q 021825 1 MILIREFVRTFREKG---IPCDVIWMDIDYMD----GFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGY 72 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~---iP~d~i~lD~~w~~----~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~ 72 (307)
+++|++.++.+.+.+ ..++.|.||++|+. ..+.+..|++|||+ ++.+++.+|++|+|++++..+.......
T Consensus 48 e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~- 126 (386)
T PLN02808 48 ETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSK- 126 (386)
T ss_pred HHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCC-
Confidence 468899999988766 45999999999975 35789999999998 9999999999999999998764222110
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCc
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESN 152 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~ 152 (307)
..|.+..+..+-.+.+.++|||++|.|.+....
T Consensus 127 -----------------------------------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~------------ 159 (386)
T PLN02808 127 -----------------------------------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTG------------ 159 (386)
T ss_pred -----------------------------------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCC------------
Confidence 124445566666666778999999999873210
Q ss_pred ccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccC--CC----Ccceeee--cCCCCCCchHHH
Q 021825 153 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFI--GS----QRYAATW--TGDNVSNWEHLH 224 (307)
Q Consensus 153 ~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~--G~----qr~~~~w--~GD~~s~W~~L~ 224 (307)
...+..|.. +.+++++ ..||++++-+.|. .- ..++..| ++|...+|+.+.
T Consensus 160 --------------~~~~~~y~~-----m~~AL~~---tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~ 217 (386)
T PLN02808 160 --------------TSPQERYPK-----MSKALLN---SGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMT 217 (386)
T ss_pred --------------ccHHHHHHH-----HHHHHHH---hCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHH
Confidence 001233432 3345543 3589988754332 11 2234455 699999999888
Q ss_pred HHHHHHH
Q 021825 225 MSISMVL 231 (307)
Q Consensus 225 ~~i~~~l 231 (307)
..+...-
T Consensus 218 ~~~~~~~ 224 (386)
T PLN02808 218 SRADQND 224 (386)
T ss_pred HHHHhhh
Confidence 7775443
No 28
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=6.1e-11 Score=111.79 Aligned_cols=252 Identities=17% Similarity=0.191 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC-------CcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccccCCCcc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD-------GFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYF 73 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~-------~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~ 73 (307)
+++++.++..+ +++++.++||++|++ ..|||-.+.++||. ++++|+.++++|+++.+|+.|.+...++ .
T Consensus 309 e~ile~vk~ak--k~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~dS-d 385 (687)
T COG3345 309 EEILENVKEAK--KFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSEDS-D 385 (687)
T ss_pred HHHHHHHHHHh--hcCeEEEEEccccccccCcchhhhhceecchhhccccHHHHHHHHHHcCCccceeecchhcccch-H
Confidence 56777777764 566999999999993 45899999999999 9999999999999999999997655332 4
Q ss_pred ccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHH-HhhcCccEEEecCCCCcccCCCCCCCCCCc
Q 021825 74 VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESN 152 (307)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~-l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~ 152 (307)
+|+ .+.++.|| .+|.|.... .....+|+.||.+.....+.+.. +...-||.+|.|||.-. +. + +.
T Consensus 386 lfr--qHPDWvvk-~~G~p~~~~---Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l-~k------l-g~ 451 (687)
T COG3345 386 LFR--QHPDWVVK-VNGYPLMAG---RNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNREL-FK------L-GF 451 (687)
T ss_pred HHh--hCCCeEEe-cCCcccccc---ccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcce-ee------c-CC
Confidence 775 57888888 677765532 13456788888877765555543 33556777777777421 10 0 00
Q ss_pred ccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCCCcc-------e-eeecCCCCCCchHHH
Q 021825 153 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-------A-ATWTGDNVSNWEHLH 224 (307)
Q Consensus 153 ~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~-------~-~~w~GD~~s~W~~L~ 224 (307)
...+. .-+ ..|-+ |+-.... ..+.|.|+-.|+..|..|+ . ..|..|....=+.|+
T Consensus 452 ~~~~~--l~q--------qry~l------y~l~~~l-~~k~~~i~FeScasGg~r~d~gml~~~~~~w~Sd~~dAi~r~~ 514 (687)
T COG3345 452 LFWGA--LPQ--------QRYQL------YRLFDQL-NLKFPHILFESCASGGERIDKGMLEYSPQLWCSDLTDAIGRLD 514 (687)
T ss_pred CCCcc--ccc--------hHHHH------HHHHHHh-hhcCCCchhhhhcccccccchHHhhhcccccCCCCcchhhhcc
Confidence 00000 001 01211 2222222 2355667777777666554 2 489888765433332
Q ss_pred HHHHHHHHhcccCCC--cccccCCCCCCCCChhHHHHHHHhhhhcc---cccccCCCCCCCCCccccChhhHHHHHHHHH
Q 021825 225 MSISMVLQLGLSGQP--FSGPDIGGFDGNATPRLFGRWMGIGAMFP---FCRGHTESDAIDHEPWSFGEEVLFCSSIVII 299 (307)
Q Consensus 225 ~~i~~~l~~~l~G~p--~~g~DigGf~~~~~~EL~~RW~Q~~af~P---~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i~ 299 (307)
.|-. +-.=+| ++|.-|++- +-=-+||+---.+.- +|+.-+ ..-+|-...++-.+++.+.|.
T Consensus 515 iqrg-----~s~~~P~~~mGaHi~~~-----p~h~~~rm~~l~~rg~~a~~g~~g----~elD~~~lsdeek~~~akqia 580 (687)
T COG3345 515 IQRG-----GSYTYPPESMGAHISAV-----PNHQARRMTSLETRGLVAHFGFWG----YELDCTILSDEEKDLTAKQIA 580 (687)
T ss_pred cccc-----CcccCChHHhhhhccCC-----CcHHHhhhhhhhhhhHHHHhhhhc----cCCCcccCCHHHHHHHHHHHH
Confidence 2111 011123 444445432 222456654333322 233332 245667777777777777776
Q ss_pred Hh
Q 021825 300 AF 301 (307)
Q Consensus 300 l~ 301 (307)
|+
T Consensus 581 ly 582 (687)
T COG3345 581 LY 582 (687)
T ss_pred HH
Confidence 65
No 29
>PLN02899 alpha-galactosidase
Probab=99.17 E-value=1.8e-09 Score=104.21 Aligned_cols=191 Identities=15% Similarity=0.141 Sum_probs=119.0
Q ss_pred ChHHHHHHHHHHHcC---CCcceEEecccccCC-----------------cceeeecCCCCCC------hHHHHHHHHHC
Q 021825 1 MILIREFVRTFREKG---IPCDVIWMDIDYMDG-----------------FRCFTFDKERFPD------PKSLAADLHLN 54 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~---iP~d~i~lD~~w~~~-----------------~~~f~~d~~~FPd------~~~~~~~l~~~ 54 (307)
|++|++.++ +.+.+ ...+-|.||+.|+.. ++.+..|++|||+ ++.+.+.+|++
T Consensus 47 E~~i~~~Ad-~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHsk 125 (633)
T PLN02899 47 EEEFLQNAE-IVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAM 125 (633)
T ss_pred HHHHHHHHH-HHHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhC
Confidence 356777776 34433 567779999999742 4568899999995 99999999999
Q ss_pred CCeEEeecCCccccCC---Ccccccc-------ccccceeEEcCCCCceeeeec-CCCccCCCCCChHHHHHHHHHHHHH
Q 021825 55 GFKAIWMLDPGIKHED---GYFVYDS-------GSKIDVWIQKADGTPFIGEVW-PGPCVFPDYTQSKVRSWWGSLVKDF 123 (307)
Q Consensus 55 G~k~~~~~~P~i~~~~---~~~~~~~-------~~~~~~~~~~~~g~~~~~~~w-~g~~~~~Dftnp~a~~ww~~~l~~l 123 (307)
|+|+++.+.+.+.... ..++... +...++..++. +.+-..-.| +...--+|.+.+.+++|+++..+.+
T Consensus 126 GLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DI-a~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla~tf 204 (633)
T PLN02899 126 GLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDI-ALKERACAWMSHGFMSVNTKLGAGKAFLRSLYDQY 204 (633)
T ss_pred CcceEEEecCCCcccccccCCccccccccccccccccccchhhc-cccccccccCCCCcccccccccchhhhhHHHHHHH
Confidence 9999999988875421 1111110 00001111110 000000012 1111237888899999999988888
Q ss_pred hhcCccEEEecCCCCcccCCCCCCCCCCcccCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccC
Q 021825 124 IYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFI 203 (307)
Q Consensus 124 ~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~ 203 (307)
.++|||++|.|...+.. .. ...| +++.+++++ ..||++++-+-
T Consensus 205 AsWGVDyLKyD~c~~~~------------~~---------------~~ey-----~~ms~AL~a---TGRPIvySLsp-- 247 (633)
T PLN02899 205 AEWGVDFVKHDCVFGDD------------FD---------------LEEI-----TYVSEVLKE---LDRPIVYSLSP-- 247 (633)
T ss_pred HHhCCCEEEEcCCCCCC------------CC---------------hHHH-----HHHHHHHHH---hCCCeEEEecC--
Confidence 89999999999642210 00 0122 344566654 46899998763
Q ss_pred CCC----------cceeee--cCCCCCCchHHHHHHHHH
Q 021825 204 GSQ----------RYAATW--TGDNVSNWEHLHMSISMV 230 (307)
Q Consensus 204 G~q----------r~~~~w--~GD~~s~W~~L~~~i~~~ 230 (307)
|.+ .++..| +||...+|..+...+..+
T Consensus 248 G~~~~p~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~ 286 (633)
T PLN02899 248 GTSATPTMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVS 286 (633)
T ss_pred CcccchhhhhhhhccCccceecCCcccchHHHHHHHHHH
Confidence 222 233455 699999999988766544
No 30
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=98.25 E-value=1.1e-05 Score=73.74 Aligned_cols=190 Identities=23% Similarity=0.303 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHcC---CCcceEEecccccCCcce----eeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccccCCCcc
Q 021825 2 ILIREFVRTFREKG---IPCDVIWMDIDYMDGFRC----FTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYF 73 (307)
Q Consensus 2 ~~v~~~~~~~~~~~---iP~d~i~lD~~w~~~~~~----f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~ 73 (307)
+-+.++++.+.+.+ +...-|.+|+=|.+..++ ..-|+++||+ .+++.+.+|.+|+|+++..+-...+..+
T Consensus 60 ~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g-- 137 (414)
T KOG2366|consen 60 QLFKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAG-- 137 (414)
T ss_pred HHHHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhcc--
Confidence 44567778887755 888999999999865444 5678999998 8999999999999999875533111111
Q ss_pred ccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCcccCCCCCCCCCCcc
Q 021825 74 VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNI 153 (307)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~~~~~~~~~~p~~~~ 153 (307)
.|| ....-..-.+.+.++|||.+|+|.+.... .
T Consensus 138 ------------------------~PG-----------S~~~e~~DA~tFA~WgvDylKlD~C~~~~---------~--- 170 (414)
T KOG2366|consen 138 ------------------------YPG-----------SLGHEESDAKTFADWGVDYLKLDGCFNNL---------I--- 170 (414)
T ss_pred ------------------------CCc-----------ccchhhhhhhhhHhhCCcEEecccccccc---------c---
Confidence 112 11111122345668999999999875321 0
Q ss_pred cCCCCCCCCccccccccchhHHHHHHHHHHHHHhhcCCCCcEEEE-cc---ccCC---------CCcceeee--cCCCCC
Q 021825 154 HRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLT-RA---GFIG---------SQRYAATW--TGDNVS 218 (307)
Q Consensus 154 ~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~s-Rs---~~~G---------~qr~~~~w--~GD~~s 218 (307)
...-.|+.+ ++ ++ +...||++.+ ++ ...+ .+.++..| .+|...
T Consensus 171 --------------~~~~~Yp~m-s~----aL---N~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~d 228 (414)
T KOG2366|consen 171 --------------TMPEGYPIM-SR----AL---NNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQD 228 (414)
T ss_pred --------------cccccchhH-HH----HH---hccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhh
Confidence 112233332 22 22 2457899998 54 1122 23444556 589999
Q ss_pred CchHHHHHHHHHHHhcccCCCcccccCCCCCC---------CCChhHHHHHHHhhhh
Q 021825 219 NWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG---------NATPRLFGRWMGIGAM 266 (307)
Q Consensus 219 ~W~~L~~~i~~~l~~~l~G~p~~g~DigGf~~---------~~~~EL~~RW~Q~~af 266 (307)
+|..+.+.|...-...-.=.|.-|+ ||... .-+.|+|. .||+..
T Consensus 229 tW~Sv~~I~d~~~~nqd~~~~~agP--g~WNDpDmL~iGN~G~s~e~y~--~qf~lW 281 (414)
T KOG2366|consen 229 TWKSVDSIIDYICWNQDRIAPLAGP--GGWNDPDMLEIGNGGMSYEEYK--GQFALW 281 (414)
T ss_pred HHHHHHHHHHHHhhhhhhhccccCC--CCCCChhHhhcCCCCccHHHHH--HHHHHH
Confidence 9998877777655565555676676 77642 24677776 454443
No 31
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=97.67 E-value=0.00039 Score=69.37 Aligned_cols=129 Identities=12% Similarity=0.162 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCc--------------------ceeeecCCCCC--------------ChHHH
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGF--------------------RCFTFDKERFP--------------DPKSL 47 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~--------------------~~f~~d~~~FP--------------d~~~~ 47 (307)
+.|++.++.+.+.++|+..+.||++|+.-. ..|+-+. +|| .++.+
T Consensus 220 ~~I~~~l~~l~~~g~p~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~~n~-KF~~~~~~~~~~~~~~~Glk~~ 298 (758)
T PLN02355 220 EGVKQGLESLEKGGVTPKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIKENH-KFQKNGKEGHRVDDPALGLGHI 298 (758)
T ss_pred HHHHHHHHHHHhCCCCccEEEEeccccccccccccccccccccchhhhhhccccccc-cccccccccccccCCCCcHHHH
Confidence 678999999999999999999999998521 1233333 566 67899
Q ss_pred HHHHHH-CCCeEE-eecC-----CccccCCC-cccccccc-----ccceeEEcCCCCceeeeecCCCccCCCCCChH-HH
Q 021825 48 AADLHL-NGFKAI-WMLD-----PGIKHEDG-YFVYDSGS-----KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSK-VR 113 (307)
Q Consensus 48 ~~~l~~-~G~k~~-~~~~-----P~i~~~~~-~~~~~~~~-----~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~-a~ 113 (307)
++.||+ .|+|.+ +|-. =.|.++.. ...|+... ..++....++.. ....-++...++ +|+ +.
T Consensus 299 V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~~~~a--~d~i~~~G~glv---~Pe~~~ 373 (758)
T PLN02355 299 VTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNEPCDA--LESITTNGLGLV---NPEKVF 373 (758)
T ss_pred HHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccCcchh--hhhcccCceecc---CHHHHH
Confidence 999997 588854 5621 11222111 11122111 111111111100 000001122333 455 66
Q ss_pred HHHHHHHHHHhhcCccEEEecCC
Q 021825 114 SWWGSLVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 114 ~ww~~~l~~l~~~Gvdg~w~D~~ 136 (307)
.+|.+....|.+.||||+|.|..
T Consensus 374 ~FY~~~hsyL~s~GVDgVKVD~Q 396 (758)
T PLN02355 374 SFYNELHSYLASAGIDGVKVDVQ 396 (758)
T ss_pred HHHHHHHHHHHHcCCCeEEEchh
Confidence 88998888898999999999964
No 32
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=97.57 E-value=0.00061 Score=67.90 Aligned_cols=131 Identities=19% Similarity=0.187 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC--------------------cceeeecCC--------CCCC-hHHHHHHHH
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG--------------------FRCFTFDKE--------RFPD-PKSLAADLH 52 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~--------------------~~~f~~d~~--------~FPd-~~~~~~~l~ 52 (307)
+.|++.++.+.+.++|+..+.||++|+.- ...|+-+++ .||. ++.+++.+|
T Consensus 216 ~~I~~~l~~l~e~gip~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF~~~~~~~~fp~Glk~~V~~iK 295 (775)
T PLN02219 216 EGVDEGLKSLSEGGTPPKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKFQKNDQKNEQVSGLKHVVDDAK 295 (775)
T ss_pred HHHHHHHHHHHhCCCCceEEEEccCccccccccccccccccccchhhhhhccccccccccccccccCCCCcHHHHHHHHH
Confidence 67899999999999999999999999842 112332221 3554 899999999
Q ss_pred H-CCCeEE-eecC-----CccccCC-CccccccccccceeEEcCCC---Cceee--eecCCCccCCCCCChHHHHHHHHH
Q 021825 53 L-NGFKAI-WMLD-----PGIKHED-GYFVYDSGSKIDVWIQKADG---TPFIG--EVWPGPCVFPDYTQSKVRSWWGSL 119 (307)
Q Consensus 53 ~-~G~k~~-~~~~-----P~i~~~~-~~~~~~~~~~~~~~~~~~~g---~~~~~--~~w~g~~~~~Dftnp~a~~ww~~~ 119 (307)
+ .|+|.+ +|-. =.|.++. ....|+... .+-+.+++- .|-+. ..-.+...++| ..++.++|.+.
T Consensus 296 ~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~--~~p~~spg~~~~~pd~a~d~l~~~G~glV~--P~~~~~FYd~~ 371 (775)
T PLN02219 296 QRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSAL--AYPVQSPGVLGNQPDIVMDSLSVHGLGLVN--PKKVFNFYNEL 371 (775)
T ss_pred hccCCcEEEEeeeccceecCcCCCCcccccccccc--cccccCCCccccCcchhhhhhhhCCccccC--HHHHHHHHHHH
Confidence 6 488854 5521 1222221 111233211 111222110 11110 00011223443 24567899998
Q ss_pred HHHHhhcCccEEEecCC
Q 021825 120 VKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 120 l~~l~~~Gvdg~w~D~~ 136 (307)
+..|.+.||||+|.|.-
T Consensus 372 hsyLas~GVDgVKVDvQ 388 (775)
T PLN02219 372 HAYLASCGVDGVKVDVQ 388 (775)
T ss_pred HHHHHHcCCCEEEEchh
Confidence 88899999999999954
No 33
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=97.56 E-value=0.0008 Score=67.12 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcc-------------------------eeeec---------CCCCC-ChHH
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFR-------------------------CFTFD---------KERFP-DPKS 46 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~-------------------------~f~~d---------~~~FP-d~~~ 46 (307)
+.|++-++.+++.++|+..+.||++|+.-.. .|+-+ ++.|| .++.
T Consensus 230 egI~~gl~~L~~~Gip~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~KF~~~~~~~~~~p~Glk~ 309 (777)
T PLN02711 230 QGVWEGVKGLVDGGCPPGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENYKFRDYVSPKSLSNKGMGA 309 (777)
T ss_pred HHHHHHHHHHHhCCCCccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccccccccccccCCCCCcHHH
Confidence 6789999999999999999999999985211 12222 22243 3788
Q ss_pred HHHHHHHC--CCeEE-eecC-----CccccCCCccccccccccceeEEcCCC----Ccee--eeecCCCccCCCCCChH-
Q 021825 47 LAADLHLN--GFKAI-WMLD-----PGIKHEDGYFVYDSGSKIDVWIQKADG----TPFI--GEVWPGPCVFPDYTQSK- 111 (307)
Q Consensus 47 ~~~~l~~~--G~k~~-~~~~-----P~i~~~~~~~~~~~~~~~~~~~~~~~g----~~~~--~~~w~g~~~~~Dftnp~- 111 (307)
+++.||++ |+|.+ +|-. =.|.++.. ...+ .+-++.+...| .+-+ ...-.+...++ +|+
T Consensus 310 ~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~--~~~~--~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv---~Pe~ 382 (777)
T PLN02711 310 FIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVP--GLPE--SKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLV---PPEL 382 (777)
T ss_pred HHHHHHhhCCCCCEEEEeeeccCcccCcCCCCC--CCcc--ceeeccccCcccccccccccccccccCccccc---CHHH
Confidence 89999995 68754 5521 11222211 0000 00111111111 0000 00001112233 344
Q ss_pred HHHHHHHHHHHHhhcCccEEEecCC
Q 021825 112 VRSWWGSLVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 112 a~~ww~~~l~~l~~~Gvdg~w~D~~ 136 (307)
+.++|.+....|.+.||||+|.|.-
T Consensus 383 ~~~FY~~~hs~Las~GVDgVKVDvQ 407 (777)
T PLN02711 383 AYQMYEGLHSHLQSVGIDGVKVDVI 407 (777)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEchh
Confidence 5678988888898999999999953
No 34
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=97.55 E-value=0.00087 Score=66.20 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCC---c----ce-eeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDG---F----RC-FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHED 70 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~---~----~~-f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~ 70 (307)
.|.+-++.+++ +.+++|||-+=+... . .+ +.+|+ +|.+ +++||+.+|++|+|+++-+.+ +++.+.
T Consensus 29 gi~~~Ldyl~~--LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~-~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~ 105 (539)
T TIGR02456 29 GLTSKLDYLKW--LGVDALWLLPFFQSPLRDDGYDVSDYRAILP-EFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQH 105 (539)
T ss_pred HHHHhHHHHHH--CCCCEEEECCCcCCCCCCCCCCcccccccCh-hhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCC
Confidence 34555565554 777889988655321 1 22 45554 4544 689999999999999987665 444333
Q ss_pred Ccccccc------ccccceeEEcCCCCceee----------eecC--------------CCccCCCCCChHHHHHHHHHH
Q 021825 71 GYFVYDS------GSKIDVWIQKADGTPFIG----------EVWP--------------GPCVFPDYTQSKVRSWWGSLV 120 (307)
Q Consensus 71 ~~~~~~~------~~~~~~~~~~~~g~~~~~----------~~w~--------------g~~~~~Dftnp~a~~ww~~~l 120 (307)
. .|++ ....++|+....+..+.. ..|. ....-+|+.||++++...+.+
T Consensus 106 ~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~ 183 (539)
T TIGR02456 106 P--WFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVM 183 (539)
T ss_pred H--HHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHH
Confidence 2 1111 111244443222211110 1121 011237788999999999999
Q ss_pred HHHhhcCccEEEecCC
Q 021825 121 KDFIYNGVDGIWNDMN 136 (307)
Q Consensus 121 ~~l~~~Gvdg~w~D~~ 136 (307)
+.+.+.|||||-+|..
T Consensus 184 ~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 184 RFWLDLGVDGFRLDAV 199 (539)
T ss_pred HHHHHcCCCEEEEecH
Confidence 9888999999999964
No 35
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=97.42 E-value=0.0016 Score=65.00 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcc-------------------eeeecCCCCC-------ChHHHHHHHH-HC
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFR-------------------CFTFDKERFP-------DPKSLAADLH-LN 54 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~-------------------~f~~d~~~FP-------d~~~~~~~l~-~~ 54 (307)
+.|++.++.+.+.++|+..+.||++|+.-.+ .|+-+ ++|| .++.+++.|| +.
T Consensus 219 ~~I~~~l~~l~~~g~p~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~~p~~Glk~~V~~iK~~~ 297 (750)
T PLN02684 219 EGVEAGLKSLAAGGTPPKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKDDPNVGIKNIVNIAKEKH 297 (750)
T ss_pred HHHHHHHHHHHhCCCCceEEEEecccccccccccccccccccchhhhhhccCccc-cccccccCCCccHHHHHHHHHhhc
Confidence 5789999999999999999999999985221 12222 4565 5899999998 45
Q ss_pred CCeEE-eecC-----CccccCCC-cccccccc-----ccceeEEcCC--CCceeeeecCCCccCCCCCChHHHHHHHHHH
Q 021825 55 GFKAI-WMLD-----PGIKHEDG-YFVYDSGS-----KIDVWIQKAD--GTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 120 (307)
Q Consensus 55 G~k~~-~~~~-----P~i~~~~~-~~~~~~~~-----~~~~~~~~~~--g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l 120 (307)
|+|.+ +|-. =.|.++.. ...|+... .+++....++ +.... -+| .+++|- .++.++|.+..
T Consensus 298 ~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~---~~g-~glv~P--~~~~~FYd~~h 371 (750)
T PLN02684 298 GLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMT---LQG-LGLVNP--KKVYKFYNELH 371 (750)
T ss_pred CCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccccc---cCc-ccccCH--HHHHHHHHHHH
Confidence 88854 5521 12222210 11122111 1122111111 00000 011 122331 34678899988
Q ss_pred HHHhhcCccEEEecCC
Q 021825 121 KDFIYNGVDGIWNDMN 136 (307)
Q Consensus 121 ~~l~~~Gvdg~w~D~~ 136 (307)
..|.+.||||+|.|..
T Consensus 372 syL~s~GVDgVKVD~Q 387 (750)
T PLN02684 372 SYLADAGIDGVKVDVQ 387 (750)
T ss_pred HHHHHcCCCeEEEChh
Confidence 8899999999999964
No 36
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.39 E-value=0.0022 Score=58.91 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC--c-ce-------eeecCCCCC--C-hHHHHHHHHHCCCeEEeecCCcccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG--F-RC-------FTFDKERFP--D-PKSLAADLHLNGFKAIWMLDPGIKH 68 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~--~-~~-------f~~d~~~FP--d-~~~~~~~l~~~G~k~~~~~~P~i~~ 68 (307)
+++.++++.+++.+ +-+|.++.-..+. + .. .+-.+..=| | ++.+|++.|++|+++-.|+...+..
T Consensus 19 ~~~~~~l~~l~~~~--~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 19 EQIDEMLDDLKSAG--FNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHHHcC--CCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 67899999999999 5667777544321 0 00 111111111 3 5899999999999999888433322
Q ss_pred CCCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecC
Q 021825 69 EDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDM 135 (307)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~ 135 (307)
.....+.+ .+...+..+..|.......-.+...++|..+||++++..+.++++. .+.|||+-+|.
T Consensus 97 ~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 97 PDVSHILK--KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred Cchhhhhh--cCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 21111111 1112222222221111100124557899999999999999999987 58999999993
No 37
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.37 E-value=0.00088 Score=53.50 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCcceEEeccc--cc-----CCcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccccCCCcccc
Q 021825 4 IREFVRTFREKGIPCDVIWMDID--YM-----DGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVY 75 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~--w~-----~~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~ 75 (307)
..++++.+++.++ +++.+... +. +..+. -.+..=.| +.++++.+|+.|+|++..++..... . ++
T Consensus 2 ~~~~~~~lk~~~v--~si~i~a~~h~g~ayYPt~~~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~-~---~~ 73 (132)
T PF14871_consen 2 PEQFVDTLKEAHV--NSITIFAKCHGGYAYYPTKVGP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDE-D---AA 73 (132)
T ss_pred HHHHHHHHHHhCC--CEEEEEcccccEEEEccCCCCc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecCh-H---HH
Confidence 4567778877765 45665432 11 11100 00100024 4899999999999999988876222 1 23
Q ss_pred ccccccceeEEcCCCCceeeeecCCC-ccCCCCCChHHHHHHHHHHHHHhh-cCccEEEecC
Q 021825 76 DSGSKIDVWIQKADGTPFIGEVWPGP-CVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 135 (307)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~~w~g~-~~~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~ 135 (307)
+ .+.++++++++|++......... ....-++ ..-++....+++++.+ .++||+++|+
T Consensus 74 ~--~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n-s~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 74 E--RHPEWFVRDADGRPMRGERFGYPGWYTCCLN-SPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred H--hCCceeeECCCCCCcCCCCcCCCCceecCCC-ccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 3 67889999999986322211111 2223443 4556788888888874 8999999996
No 38
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=97.29 E-value=0.00049 Score=62.14 Aligned_cols=131 Identities=21% Similarity=0.374 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCCcceEEecccccC-----Cc--ce-eeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCC
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMD-----GF--RC-FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDG 71 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~-----~~--~~-f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~ 71 (307)
|.+-++.+++ +.+++|||-+-+.. ++ .+ +..|+ +|.. +++||+.+|++|+|+++-+.+ +++....
T Consensus 6 i~~kLdyl~~--lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~ 82 (316)
T PF00128_consen 6 IIDKLDYLKD--LGVNAIWLSPIFESPNGYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHP 82 (316)
T ss_dssp HHHTHHHHHH--HTESEEEESS-EESSSSTTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSH
T ss_pred HHHhhHHHHH--cCCCceecccccccccccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeeccccccccc
Confidence 4455565555 56778998764432 12 23 45665 6654 789999999999999987766 4444332
Q ss_pred cc----ccccccccceeEEc-------------CCCCceeeeecC----C--CccCCCCCChHHHHHHHHHHHHHhhcCc
Q 021825 72 YF----VYDSGSKIDVWIQK-------------ADGTPFIGEVWP----G--PCVFPDYTQSKVRSWWGSLVKDFIYNGV 128 (307)
Q Consensus 72 ~~----~~~~~~~~~~~~~~-------------~~g~~~~~~~w~----g--~~~~~Dftnp~a~~ww~~~l~~l~~~Gv 128 (307)
++ ........+++... .++..+....|. . ...-+|+.||++++...+.++...+.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~gi 162 (316)
T PF00128_consen 83 WFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEEGI 162 (316)
T ss_dssp HHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHTTE
T ss_pred cccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhceE
Confidence 21 00010122233311 111122211111 1 1233678999999999998888889999
Q ss_pred cEEEecCCC
Q 021825 129 DGIWNDMNE 137 (307)
Q Consensus 129 dg~w~D~~e 137 (307)
|||-+|...
T Consensus 163 DGfR~D~~~ 171 (316)
T PF00128_consen 163 DGFRLDAAK 171 (316)
T ss_dssp SEEEETTGG
T ss_pred eEEEEcccc
Confidence 999999753
No 39
>PRK10785 maltodextrin glucosidase; Provisional
Probab=97.26 E-value=0.0026 Score=63.57 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCC--c----ce-eeecCCCCC---ChHHHHHHHHHCCCeEEeecCC-ccccCCC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDG--F----RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKHEDG 71 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~--~----~~-f~~d~~~FP---d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~ 71 (307)
-|.+-++.+++ +.+++|||-+=+... + .+ +..|+ +|. ++++|++.+|++|+|+++-+.+ +++.++.
T Consensus 180 GI~~kLdYL~~--LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~ 256 (598)
T PRK10785 180 GISEKLPYLKK--LGVTALYLNPIFTAPSVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP 256 (598)
T ss_pred HHHHHHHHHHH--cCCCEEEeCCcccCCCCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH
Confidence 34555555654 667889998755321 1 22 44554 444 4789999999999999987655 4444332
Q ss_pred ccc-ccc----------ccccceeEEcCCCCceeeeecCCCccC--CCCCChHHHHHHHH----HHHHHhh--cCccEEE
Q 021825 72 YFV-YDS----------GSKIDVWIQKADGTPFIGEVWPGPCVF--PDYTQSKVRSWWGS----LVKDFIY--NGVDGIW 132 (307)
Q Consensus 72 ~~~-~~~----------~~~~~~~~~~~~g~~~~~~~w~g~~~~--~Dftnp~a~~ww~~----~l~~l~~--~Gvdg~w 132 (307)
++. +.. ..-.++|....+|. + ..|.|.... +|+.||+++++..+ .++..++ .|||||-
T Consensus 257 ~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~-~--~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~R 333 (598)
T PRK10785 257 WFDRHNRGTGGACHHPDSPWRDWYSFSDDGR-A--LDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWR 333 (598)
T ss_pred HHHHhhccccccccCCCCCcceeeEECCCCC-c--CCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEE
Confidence 221 000 11123444443332 1 345554444 45789999998764 5677665 4999999
Q ss_pred ecCC
Q 021825 133 NDMN 136 (307)
Q Consensus 133 ~D~~ 136 (307)
+|..
T Consensus 334 lDva 337 (598)
T PRK10785 334 LDVV 337 (598)
T ss_pred EecH
Confidence 9976
No 40
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=97.25 E-value=0.0031 Score=62.39 Aligned_cols=130 Identities=17% Similarity=0.297 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccC-----Cc--ce-eeecCCCCC---ChHHHHHHHHHCCCeEEeecCC-ccccCC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMD-----GF--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKHED 70 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~-----~~--~~-f~~d~~~FP---d~~~~~~~l~~~G~k~~~~~~P-~i~~~~ 70 (307)
.|.+-++.++ ++.+++|||-+-+.. ++ .+ +..|+ +|. ++++||+.+|++|+|+++-+.+ +++.+.
T Consensus 34 gi~~~ldyl~--~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~ 110 (551)
T PRK10933 34 GVTQRLDYLQ--KLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQH 110 (551)
T ss_pred HHHHhhHHHH--hCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCch
Confidence 3455556665 456678998765421 11 22 34443 444 4789999999999999987665 344332
Q ss_pred Ccccccccc-----ccceeEEcC--CCC---cee----eee--cCC------------CccCCCCCChHHHHHHHHHHHH
Q 021825 71 GYFVYDSGS-----KIDVWIQKA--DGT---PFI----GEV--WPG------------PCVFPDYTQSKVRSWWGSLVKD 122 (307)
Q Consensus 71 ~~~~~~~~~-----~~~~~~~~~--~g~---~~~----~~~--w~g------------~~~~~Dftnp~a~~ww~~~l~~ 122 (307)
.+ +.++. -.++|+-.. ++. .+. +.. |.. ...-+|+.||++++...+.++.
T Consensus 111 ~w--f~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~ 188 (551)
T PRK10933 111 AW--FREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEF 188 (551)
T ss_pred hH--HHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHH
Confidence 22 11110 012332211 000 000 000 110 1223677899999999999998
Q ss_pred HhhcCccEEEecCCC
Q 021825 123 FIYNGVDGIWNDMNE 137 (307)
Q Consensus 123 l~~~Gvdg~w~D~~e 137 (307)
+.+.|||||-+|...
T Consensus 189 W~~~GvDGfRlDa~~ 203 (551)
T PRK10933 189 WADRGVDGLRLDVVN 203 (551)
T ss_pred HHHCCCcEEEEcchh
Confidence 889999999999654
No 41
>PLN00196 alpha-amylase; Provisional
Probab=97.23 E-value=0.0066 Score=58.15 Aligned_cols=131 Identities=17% Similarity=0.184 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCCcceEEecccccC----Cc--c-eeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCC--
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMD----GF--R-CFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHED-- 70 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~----~~--~-~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~-- 70 (307)
|.+-++.+++ +.+++|||-+-... ++ . .|..|+++|-+ +++||+.+|++|+|+++=+.+ +.+.+.
T Consensus 46 i~~kldyL~~--LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~ 123 (428)
T PLN00196 46 LMGKVDDIAA--AGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKD 123 (428)
T ss_pred HHHHHHHHHH--cCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCccccccc
Confidence 5556666655 55677999875542 22 2 26677778874 789999999999999986654 333211
Q ss_pred ---Cccccccccc---cceeE--EcCCCCcee---e--eecCCCccC--CCCCChHHHHHHHHHHHHHh-hcCccEEEec
Q 021825 71 ---GYFVYDSGSK---IDVWI--QKADGTPFI---G--EVWPGPCVF--PDYTQSKVRSWWGSLVKDFI-YNGVDGIWND 134 (307)
Q Consensus 71 ---~~~~~~~~~~---~~~~~--~~~~g~~~~---~--~~w~g~~~~--~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D 134 (307)
.|..+..+.. ..++- ...+.+.+. + ..|.+...+ +|.+||++++...+.++-+. +.|||||-+|
T Consensus 124 ~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD 203 (428)
T PLN00196 124 GRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLD 203 (428)
T ss_pred CCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEee
Confidence 1111211111 11100 000000000 0 112222233 56779999999888877665 5899999999
Q ss_pred CC
Q 021825 135 MN 136 (307)
Q Consensus 135 ~~ 136 (307)
..
T Consensus 204 ~a 205 (428)
T PLN00196 204 FA 205 (428)
T ss_pred hh
Confidence 76
No 42
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=97.23 E-value=0.0032 Score=63.18 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=70.8
Q ss_pred HHHHHcCCCcceEEecccccC------Cc---ceeeecCCCCC---ChHHHHHHHHHCCCeEEeecCC-ccccCCCc-cc
Q 021825 9 RTFREKGIPCDVIWMDIDYMD------GF---RCFTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKHEDGY-FV 74 (307)
Q Consensus 9 ~~~~~~~iP~d~i~lD~~w~~------~~---~~f~~d~~~FP---d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~-~~ 74 (307)
+.+++ +.+.+|+|-+-... ++ ..|..+ .+|. ++++||+.+|++|++|++-+.+ ++..+... ..
T Consensus 164 dyl~~--LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 240 (613)
T TIGR01515 164 PYVKE--LGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAE 240 (613)
T ss_pred HHHHH--cCCCEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhc
Confidence 44455 55667887542211 11 225554 4676 4789999999999999998765 44433211 01
Q ss_pred cccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCC
Q 021825 75 YDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~ 136 (307)
++ + ..-++..+... . ....|. ..-+|+.||+++++..+.++.++ +.|||||-+|..
T Consensus 241 ~~-~-~~~y~~~~~~~-~-~~~~w~--~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 241 FD-G-TPLYEHKDPRD-G-EHWDWG--TLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred cC-C-CcceeccCCcc-C-cCCCCC--CceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 11 0 01111111110 0 011232 23479999999999999999877 479999999974
No 43
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=97.20 E-value=0.0029 Score=62.55 Aligned_cols=129 Identities=19% Similarity=0.340 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCC-----c--ce-eeecCCCCC---ChHHHHHHHHHCCCeEEeecCC-ccccCCC
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDG-----F--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKHEDG 71 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~-----~--~~-f~~d~~~FP---d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~ 71 (307)
|.+-++.+++ +.+++|||-+-+... + .+ +.+|+ +|. +++.||+.+|++|+|+++-+.| +++.++.
T Consensus 29 i~~~l~yl~~--lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~ 105 (543)
T TIGR02403 29 IIEKLDYLKK--LGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHE 105 (543)
T ss_pred HHHhHHHHHH--cCCCEEEECCcccCCCCCCCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECccccccchH
Confidence 4455555544 677889998766422 1 22 45654 354 4789999999999999987665 4443332
Q ss_pred ccccccc-----cccceeEEc-CCCCc---ee----eeecCCC--------------ccCCCCCChHHHHHHHHHHHHHh
Q 021825 72 YFVYDSG-----SKIDVWIQK-ADGTP---FI----GEVWPGP--------------CVFPDYTQSKVRSWWGSLVKDFI 124 (307)
Q Consensus 72 ~~~~~~~-----~~~~~~~~~-~~g~~---~~----~~~w~g~--------------~~~~Dftnp~a~~ww~~~l~~l~ 124 (307)
+ +.++ .-.++|+-. ..|.+ +. +..|... ..-+|+.||++++...+.++.+.
T Consensus 106 ~--f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~ 183 (543)
T TIGR02403 106 W--FKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR 183 (543)
T ss_pred H--HHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH
Confidence 2 1111 112333221 11110 00 1112211 12367889999999888888888
Q ss_pred hcCccEEEecCCC
Q 021825 125 YNGVDGIWNDMNE 137 (307)
Q Consensus 125 ~~Gvdg~w~D~~e 137 (307)
+.|||||-+|...
T Consensus 184 ~~giDGfRlDa~~ 196 (543)
T TIGR02403 184 DKGVDGFRLDVIN 196 (543)
T ss_pred HcCCCEEEEeeeh
Confidence 8999999999763
No 44
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=97.14 E-value=0.0043 Score=62.37 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcc-----------------ee-----eec-------------CCCCCC-hH
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFR-----------------CF-----TFD-------------KERFPD-PK 45 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~-----------------~f-----~~d-------------~~~FPd-~~ 45 (307)
+.|++-++.+++.++|+..+.||++|+.-.. .| .+. .+.||. ++
T Consensus 212 ~~i~~~l~~L~~~gi~~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~kF~~~~~~~~~~~~~~GL~ 291 (747)
T PF05691_consen 212 EGILEGLKSLEEGGIPPRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSKFRAYKSGKSPEAFPSGLK 291 (747)
T ss_pred HHHHHHHHHHHhCCCCceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhhhhhccCCCcccCCcccHH
Confidence 5789999999999999999999999984110 11 111 123554 89
Q ss_pred HHHHHHHHC--CCeEE-eecC-----CccccCCCccccccc-----cccceeEEcCCCCceeeeecCCCccCCCCCCh-H
Q 021825 46 SLAADLHLN--GFKAI-WMLD-----PGIKHEDGYFVYDSG-----SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQS-K 111 (307)
Q Consensus 46 ~~~~~l~~~--G~k~~-~~~~-----P~i~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp-~ 111 (307)
.+++.||++ |+|.+ +|.. -.|.++.. ..|+.. ..+++-...++- .....-.+...+ -+| +
T Consensus 292 ~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~-~~~~~k~~~~~~spg~~~~~~d~--~~d~~~~~g~gl---v~p~~ 365 (747)
T PF05691_consen 292 HFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGM-LAYNYKLVYPKLSPGLQGNMPDL--AVDSIVKGGLGL---VDPED 365 (747)
T ss_pred HHHHHHHhhCCCCCEEEEeehhcceecCcCCCCc-cccccceeecccCCcccccCccc--cccccccCcccc---cCHHH
Confidence 999999999 78854 5632 22333211 011100 001100000000 000000011122 235 4
Q ss_pred HHHHHHHHHHHHhhcCccEEEecCC
Q 021825 112 VRSWWGSLVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 112 a~~ww~~~l~~l~~~Gvdg~w~D~~ 136 (307)
+.++|.+.+..|.+.||||+|.|..
T Consensus 366 ~~~FYd~~hsyL~s~GVDgVKVD~Q 390 (747)
T PF05691_consen 366 AFRFYDDFHSYLASAGVDGVKVDVQ 390 (747)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchh
Confidence 7789999999999999999999964
No 45
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=96.99 E-value=0.0076 Score=60.44 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHCCCeEEeecCC-ccccCCCccccccccccceeEE-cCCCCceeeeecCCCccCCCCCChHHHHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 120 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l 120 (307)
++++||+.+|++|++|++-+.+ +...... ..|+. ....++.. +.+|.... +.|-..-++..||+++++..+.+
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~-~~f~~-~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~v~~~i~~~~ 304 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREE-SPFEK-TVPGYYYRYNEDGTLSN---GTGVGNDTASEREMMRKFIVDSV 304 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCC-CcccC-CCCCeeEEECCCCCccC---CCcccCCcccCCHHHHHHHHHHH
Confidence 4899999999999999987654 3332111 12332 22344443 33332111 11212236788999999999988
Q ss_pred HHHh-hcCccEEEecCC
Q 021825 121 KDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 121 ~~l~-~~Gvdg~w~D~~ 136 (307)
+... +.|||||-+|..
T Consensus 305 ~~W~~e~~iDGfR~D~~ 321 (605)
T TIGR02104 305 LYWVKEYNIDGFRFDLM 321 (605)
T ss_pred HHHHHHcCCCEEEEech
Confidence 8876 489999999965
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.96 E-value=0.014 Score=53.42 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeee------------cCCCCCChHHHHHHHHHCCCeEEeecCCccccCC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTF------------DKERFPDPKSLAADLHLNGFKAIWMLDPGIKHED 70 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~------------d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~ 70 (307)
.+.++++.+++.++. +++||.- +..|..++ .+....|++++++.||++|+.++-.+.-|= +.
T Consensus 14 ~~~~~~~~i~~t~lN--avVIDvK--dd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk--D~ 87 (316)
T PF13200_consen 14 RLDKLLDLIKRTELN--AVVIDVK--DDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK--DP 87 (316)
T ss_pred HHHHHHHHHHhcCCc--eEEEEEe--cCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec--Ch
Confidence 456777777777665 5777742 12222222 222347999999999999999887664331 11
Q ss_pred CccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCC
Q 021825 71 GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 137 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e 137 (307)
...+ ...++-+++.+|+++.. .....++|.++++++++--+..+++.+.|||.+-+|.-.
T Consensus 88 ---~la~-~~pe~av~~~~G~~w~d---~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIR 147 (316)
T PF13200_consen 88 ---VLAE-AHPEWAVKTKDGSVWRD---NEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIR 147 (316)
T ss_pred ---HHhh-hChhhEEECCCCCcccC---CCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeee
Confidence 0111 13445556666654331 123568999999999999999899999999999999764
No 47
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.0049 Score=58.15 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHcCCCcceEE-eccccc---CCcceeeec------CCCCCC-hHHHHHHHHHCCCeEEeecCCccccCC
Q 021825 2 ILIREFVRTFREKGIPCDVIW-MDIDYM---DGFRCFTFD------KERFPD-PKSLAADLHLNGFKAIWMLDPGIKHED 70 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~-lD~~w~---~~~~~f~~d------~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~ 70 (307)
+|+.+.++++++.|+.-=.+. ...++. .....++-+ .+..-| ++.+|++-|++|+++..|+.|+.....
T Consensus 64 ~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~ 143 (418)
T COG1649 64 QELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPP 143 (418)
T ss_pred HHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCC
Confidence 688999999999997643332 222332 111112222 222334 589999999999999999999665432
Q ss_pred CccccccccccceeEEcCCCCceeeeecCC--CccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCC
Q 021825 71 GYFVYDSGSKIDVWIQKADGTPFIGEVWPG--PCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g--~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~ 136 (307)
.-.. ...+........++..+.-. .| ...++|-.+|++++|..+.+-++. ++.|||+-+|--
T Consensus 144 ~s~~--~~~~p~~~~~~~~~~~~~~~--~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 144 TSPL--TKRHPHWLTTKRPGWVYVRH--QGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred CChh--HhhCCCCcccCCCCeEEEec--CCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceeccee
Confidence 1111 11222222222233322210 11 467899999999999999998876 689999999953
No 48
>PRK03705 glycogen debranching enzyme; Provisional
Probab=96.80 E-value=0.0058 Score=61.57 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHCCCeEEeecCC-ccccC---CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP-GIKHE---DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 118 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P-~i~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 118 (307)
++++||+.+|++|++|++-+.. +.... ..+..+.......++..+.+|. + ..|.+...-+++.||+++++..+
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~-~--~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGD-Y--HNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCC-c--CCCCCccCcccCCCHHHHHHHHH
Confidence 4899999999999999986654 33221 1111121111223444344432 1 23444334578899999999999
Q ss_pred HHHHHhh-cCccEEEecCC
Q 021825 119 LVKDFIY-NGVDGIWNDMN 136 (307)
Q Consensus 119 ~l~~l~~-~Gvdg~w~D~~ 136 (307)
.++...+ .|||||-+|..
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9998775 79999999964
No 49
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=96.56 E-value=0.05 Score=53.05 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.0
Q ss_pred CCCCChHHHHHHHHHHHHHhh-cCccEEEecCCC
Q 021825 105 PDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 137 (307)
Q Consensus 105 ~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~~e 137 (307)
+|..||++++...+.++.+++ .|||||-+|...
T Consensus 203 Ln~~np~V~~~l~~~~~~w~~~~giDGfRlDavk 236 (479)
T PRK09441 203 IDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK 236 (479)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc
Confidence 455789999998888888886 899999999764
No 50
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=96.45 E-value=0.012 Score=63.29 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHCCCeEEeecCC-ccccCCCcc---ccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYF---VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 118 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 118 (307)
++++||+.+|++|++||+-+.+ +......+. .+.......+|..+. +.+..-..|.|....+|+.||+++++..+
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~-~~~~~y~~~~G~gn~~n~~~p~v~~~i~d 326 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEP-GNPKEYENWWGCGNLPNLERPFILRLPMD 326 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecC-CCCCcccCCCCCCCccccCCHHHHHHHHH
Confidence 5899999999999999987654 333222110 011011122332221 11111123445555789999999999999
Q ss_pred HHHHHhhcCccEEEecCC
Q 021825 119 LVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 119 ~l~~l~~~Gvdg~w~D~~ 136 (307)
.++..++.|||||-+|..
T Consensus 327 ~lr~Wv~~gVDGfRfDla 344 (1221)
T PRK14510 327 VLRSWAKRGVDGFRLDLA 344 (1221)
T ss_pred HHHHHHHhCCCEEEEech
Confidence 999877799999999954
No 51
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.37 E-value=0.053 Score=54.72 Aligned_cols=120 Identities=20% Similarity=0.237 Sum_probs=70.5
Q ss_pred HHHHHHcCCCcceEEecccccC------Cc---ceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCCc-c
Q 021825 8 VRTFREKGIPCDVIWMDIDYMD------GF---RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDGY-F 73 (307)
Q Consensus 8 ~~~~~~~~iP~d~i~lD~~w~~------~~---~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~-~ 73 (307)
++.+++ +.+++|+|-+=+.. ++ ..|..++ +|-. +++||+.+|++|++|++-+.+ +++.+... .
T Consensus 177 l~yl~~--LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~ 253 (633)
T PRK12313 177 IPYVKE--MGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLA 253 (633)
T ss_pred HHHHHH--cCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccccc
Confidence 455555 55667887643211 11 2245543 5544 689999999999999997665 44332211 0
Q ss_pred cccccccccee-EEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-cCccEEEecCCC
Q 021825 74 VYDSGSKIDVW-IQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 137 (307)
Q Consensus 74 ~~~~~~~~~~~-~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~~e 137 (307)
.++ + ..++ ..++. ..+ ...|.. .-+|+.||+++++..+.++..++ .|||||-+|...
T Consensus 254 ~~~-~--~~~~~~~~~~-~~~-~~~w~~--~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~ 312 (633)
T PRK12313 254 YFD-G--TPLYEYQDPR-RAE-NPDWGA--LNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVS 312 (633)
T ss_pred ccC-C--CcceeecCCC-CCc-CCCCCC--cccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChh
Confidence 111 0 0111 11111 011 113432 34799999999999888888775 799999999764
No 52
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.35 E-value=0.019 Score=58.29 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHCCCeEEeecCC-ccccCCC---ccccccccccceeEEcCCC-CceeeeecCCCccCCCCCChHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP-GIKHEDG---YFVYDSGSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWG 117 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~---~~~~~~~~~~~~~~~~~~g-~~~~~~~w~g~~~~~Dftnp~a~~ww~ 117 (307)
++++||+.+|++|++|++-+.. ++..... ...+.......++-.+.+. ..+ ..|.|...-+|+.||+++++..
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~--~~~~g~gn~ln~~~p~vr~~i~ 323 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYY--INDTGTGNTLNLSHPRVLQMVM 323 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCcee--cCCCCccccccCCCHHHHHHHH
Confidence 4899999999999999987654 3332111 0111111112233333221 111 1222333458999999999998
Q ss_pred HHHHHHh-hcCccEEEecCCC
Q 021825 118 SLVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 118 ~~l~~l~-~~Gvdg~w~D~~e 137 (307)
+.++.+. +.|||||-+|...
T Consensus 324 d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 324 DSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred HHHHHHHHHcCCcEEEEechh
Confidence 8888877 5899999999754
No 53
>PLN02361 alpha-amylase
Probab=96.33 E-value=0.093 Score=49.84 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccC----Cc--ce-eeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-cccc-C-
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMD----GF--RC-FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKH-E- 69 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~----~~--~~-f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~-~- 69 (307)
.|.+-++.+++. .+++|||-+-... ++ .+ +..| .+|.. ++.||+.+|++|+|+++-+.+ +... .
T Consensus 30 ~i~~kl~~l~~l--G~t~iwl~P~~~~~~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~ 106 (401)
T PLN02361 30 NLEGKVPDLAKS--GFTSAWLPPPSQSLAPEGYLPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQ 106 (401)
T ss_pred HHHHHHHHHHHc--CCCEEEeCCCCcCCCCCCCCcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCC
Confidence 455666666554 5677998876532 11 22 4565 46764 789999999999999986543 2211 1
Q ss_pred ---CCccccccccccce---eE-EcCCCCceeeeecCCCccC--CCCCChHHHHHHHHHHHHHhh-cCccEEEecCCC
Q 021825 70 ---DGYFVYDSGSKIDV---WI-QKADGTPFIGEVWPGPCVF--PDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 137 (307)
Q Consensus 70 ---~~~~~~~~~~~~~~---~~-~~~~g~~~~~~~w~g~~~~--~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~~e 137 (307)
..|..|+ +...++ -+ .+..|.. ....+....++ +|.+||++++..++.++-+.+ .|||||-+|...
T Consensus 107 ~~~~~y~~~~-g~~~~wd~~~~~~~~~g~~-~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk 182 (401)
T PLN02361 107 GHGGMYNRYD-GIPLPWDEHAVTSCTGGLG-NRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAK 182 (401)
T ss_pred CCCCCcccCC-CCcCCCCccccccccCCCC-CccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 1111121 100000 00 0000100 00000111223 567899999998888877764 899999999763
No 54
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=96.16 E-value=0.023 Score=52.02 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=63.5
Q ss_pred CcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccc-ccc---cccceeEEcCCCCc
Q 021825 17 PCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVY-DSG---SKIDVWIQKADGTP 92 (307)
Q Consensus 17 P~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~-~~~---~~~~~~~~~~~g~~ 92 (307)
++|.+++|....+. +...|. ++-++.||+.|.+++..++- ..-.+|..| ++. ....++...
T Consensus 64 ~~d~vVID~~~~g~------~~~~fs--~~~i~~Lk~~g~~viaYlSv--Ge~E~~R~y~~~~~~~~~~~~l~~~----- 128 (315)
T TIGR01370 64 PFELVVIDYSKDGT------EDGTYS--PEEIVRAAAAGRWPIAYLSI--GAAEDYRFYWQKGWKVNAPAWLGNE----- 128 (315)
T ss_pred CCCEEEEccccccC------cccCCC--HHHHHHHHhCCcEEEEEEEc--hhccccchhhhhhhhcCCHHHhCCC-----
Confidence 57778887554211 111232 56788899999998876652 221222222 110 011111111
Q ss_pred eeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCC
Q 021825 93 FIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 137 (307)
Q Consensus 93 ~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e 137 (307)
...|||. .++|+.+|+-++...+.++.+.+.|+||+-+|.-+
T Consensus 129 --n~~W~g~-~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lD 170 (315)
T TIGR01370 129 --DPDWPGN-YDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLID 170 (315)
T ss_pred --CCCCCCc-eeEecccHHHHHHHHHHHHHHHHcCCCeEeeccch
Confidence 2347774 67899999988888888888889999999999754
No 55
>PLN02960 alpha-amylase
Probab=96.12 E-value=0.054 Score=55.68 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCCcceEEeccccc------CCc---ceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCCc
Q 021825 6 EFVRTFREKGIPCDVIWMDIDYM------DGF---RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDGY 72 (307)
Q Consensus 6 ~~~~~~~~~~iP~d~i~lD~~w~------~~~---~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~ 72 (307)
+.+..+++.|+ .+|+|=+=.. -++ ..|..+ .+|-. ++.||+.+|++|++|++-+.| ++..+...
T Consensus 421 ~~LdYLk~LGv--t~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~ 497 (897)
T PLN02960 421 KVLPHVKKAGY--NAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV 497 (897)
T ss_pred HHHHHHHHcCC--CEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCcccc
Confidence 44666666654 4566543221 011 224443 35544 689999999999999997665 44443221
Q ss_pred --cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCCC
Q 021825 73 --FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 138 (307)
Q Consensus 73 --~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e~ 138 (307)
..|+ +....++-....| ....|. ...+|+.+|+++++..+.++..+ +.+||||-+|.-..
T Consensus 498 ~L~~FD-G~~~~Yf~~~~~g---~~~~WG--~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~s 560 (897)
T PLN02960 498 GLSLFD-GSNDCYFHSGKRG---HHKRWG--TRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGS 560 (897)
T ss_pred chhhcC-CCccceeecCCCC---ccCCCC--CcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccce
Confidence 1222 1111222221111 122453 24589999999999998888876 57999999996643
No 56
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.08 E-value=0.06 Score=54.24 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=59.2
Q ss_pred eeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCCccccccccccceeEEcCCCCceeeeecCCCccCCCCCC
Q 021825 34 FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQ 109 (307)
Q Consensus 34 f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftn 109 (307)
|..+ .+|-. ++.||+.+|++|++|++-+.+ ++..+.....+-++.. -+...++. .-....|. ...+|+.+
T Consensus 207 ~~~~-~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~-~y~~~~~~--~g~~~~w~--~~~~~~~~ 280 (639)
T PRK14706 207 YAPT-SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGP-LYEYADPR--KGYHYDWN--TYIFDYGR 280 (639)
T ss_pred cccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCc-ceeccCCc--CCcCCCCC--CcccCCCC
Confidence 5554 45654 689999999999999987665 4433221110000100 01111111 00112342 23489999
Q ss_pred hHHHHHHHHHHHHHh-hcCccEEEecCCC
Q 021825 110 SKVRSWWGSLVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 110 p~a~~ww~~~l~~l~-~~Gvdg~w~D~~e 137 (307)
|+++++..+.++..+ +.+||||-+|...
T Consensus 281 ~eVr~~l~~~~~~W~~e~~iDG~R~Dav~ 309 (639)
T PRK14706 281 NEVVMFLIGSALKWLQDFHVDGLRVDAVA 309 (639)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeeh
Confidence 999999988888876 5899999999754
No 57
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=96.06 E-value=0.034 Score=54.00 Aligned_cols=129 Identities=22% Similarity=0.260 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCCcceEEecccccC---Cc----ce-eeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCCc
Q 021825 5 REFVRTFREKGIPCDVIWMDIDYMD---GF----RC-FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDGY 72 (307)
Q Consensus 5 ~~~~~~~~~~~iP~d~i~lD~~w~~---~~----~~-f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~ 72 (307)
.+-++.+++ +.+++|||.+-+.. .. .+ ...|+ .|.. ++++++.+|++|+|+++-+.. +.+.+..+
T Consensus 32 ~~~LdYl~~--LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~-~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~ 108 (505)
T COG0366 32 TEKLDYLKE--LGVDAIWLSPIFESPQADHGYDVSDYTKVDP-HFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPW 108 (505)
T ss_pred HHhhhHHHH--hCCCEEEeCCCCCCCccCCCccccchhhcCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHH
Confidence 344445543 56788998865543 11 22 23443 5554 689999999999999986542 22222211
Q ss_pred ccccc-cc---c-cceeEE---------------cCCCCcee-----ee-ec-CCCcc-CCCCCChHHHHHHHHHHHHHh
Q 021825 73 FVYDS-GS---K-IDVWIQ---------------KADGTPFI-----GE-VW-PGPCV-FPDYTQSKVRSWWGSLVKDFI 124 (307)
Q Consensus 73 ~~~~~-~~---~-~~~~~~---------------~~~g~~~~-----~~-~w-~g~~~-~~Dftnp~a~~ww~~~l~~l~ 124 (307)
+.... .. . ..+++- ...+.... .. .+ ..... -+++.||+++++..+.++...
T Consensus 109 f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~ 188 (505)
T COG0366 109 FKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL 188 (505)
T ss_pred HHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 11000 00 0 122221 01111110 00 01 11112 278999999999888888888
Q ss_pred hcCccEEEecCC
Q 021825 125 YNGVDGIWNDMN 136 (307)
Q Consensus 125 ~~Gvdg~w~D~~ 136 (307)
+.|||||-+|.-
T Consensus 189 ~~gvDGfRlDa~ 200 (505)
T COG0366 189 DKGVDGFRLDAA 200 (505)
T ss_pred HcCCCeEEeccH
Confidence 899999999865
No 58
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.05 E-value=0.045 Score=58.56 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=70.6
Q ss_pred HHHHHHHcCCCcceEEeccc--------ccCC-cceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCCcc
Q 021825 7 FVRTFREKGIPCDVIWMDID--------YMDG-FRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDGYF 73 (307)
Q Consensus 7 ~~~~~~~~~iP~d~i~lD~~--------w~~~-~~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~ 73 (307)
+++.+++. .+.+|+|=+= |.-. .+.|..+ .+|-. ++.||+.+|++|++||+-+.| ++..+. ..
T Consensus 771 lldYlk~L--Gvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~~ 846 (1224)
T PRK14705 771 LVDYVKWL--GFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-WA 846 (1224)
T ss_pred HHHHHHHh--CCCEEEECccccCCCCCCCCCCccccCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch-hh
Confidence 35556554 4555765432 2111 1235553 46655 689999999999999997666 343322 11
Q ss_pred ccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCC
Q 021825 74 VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e 137 (307)
+.. .....+....+...-....|.. ..+|+.+|+++++..+.++..+ +.+||||-+|.-.
T Consensus 847 l~~--fdg~~~y~~~d~~~g~~~~Wg~--~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~ 907 (1224)
T PRK14705 847 LAQ--FDGQPLYEHADPALGEHPDWGT--LIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVA 907 (1224)
T ss_pred hhh--cCCCcccccCCcccCCCCCCCC--ceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehh
Confidence 100 0000011111111001123533 3489999999999988888877 4799999999854
No 59
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.04 E-value=0.064 Score=53.10 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCCcceEEeccccc----CCc-----ceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYM----DGF-----RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHE 69 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~----~~~-----~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~ 69 (307)
.|.+-++.+++ +.+++|+|-+=.. .++ ..|..+ .+|-. +++||+.+|++|++|++-+.+ ++..+
T Consensus 112 gi~~~l~yl~~--LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~ 188 (542)
T TIGR02402 112 AAIEKLPYLAD--LGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPE 188 (542)
T ss_pred HHHHhhHHHHH--cCCCEEEeCccccCCCCCCCCCCccCccccc-cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCc
Confidence 34455666655 4556687654321 111 124444 35554 689999999999999997654 44433
Q ss_pred CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCCh---HHHHHHHHHHHHHh-hcCccEEEecCC
Q 021825 70 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQS---KVRSWWGSLVKDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp---~a~~ww~~~l~~l~-~~Gvdg~w~D~~ 136 (307)
..|. .. ... +|-.. . ...|. . -+|+.+| +++++..+.++..+ +.|||||-+|..
T Consensus 189 ~~~~--~~-~~~-y~~~~-~-----~~~wg-~--~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~ 246 (542)
T TIGR02402 189 GNYL--PR-YAP-YFTDR-Y-----STPWG-A--AINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAV 246 (542)
T ss_pred cccc--cc-cCc-cccCC-C-----CCCCC-C--ccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCH
Confidence 3321 10 011 33111 1 12332 2 3899999 99999888888876 579999999965
No 60
>PLN02784 alpha-amylase
Probab=95.97 E-value=0.14 Score=52.71 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccC----Cc--ce-eeecCCCCC---ChHHHHHHHHHCCCeEEeecCC-ccccC--
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMD----GF--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIKHE-- 69 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~----~~--~~-f~~d~~~FP---d~~~~~~~l~~~G~k~~~~~~P-~i~~~-- 69 (307)
.|.+-++.+++. .+++|||-+-... +| .+ |..| .+|. +++.||+.+|++|+++++-+.+ +....
T Consensus 522 ~I~ekldyL~~L--G~taIWLpP~~~s~s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~ 598 (894)
T PLN02784 522 ELGEKAAELSSL--GFTVVWLPPPTESVSPEGYMPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQ 598 (894)
T ss_pred HHHHHHHHHHHh--CCCEEEeCCCCCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHHHHCCCEEEEEECccccccccc
Confidence 455666666554 5677998875431 22 22 5565 5676 4789999999999999986543 22211
Q ss_pred --C-CccccccccccceeEEcCCCCcee--eeecCCC--cc--CCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCC
Q 021825 70 --D-GYFVYDSGSKIDVWIQKADGTPFI--GEVWPGP--CV--FPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 70 --~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~w~g~--~~--~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e 137 (307)
. .+..|.....-+-.....+...+. +..+.|. .. =+|.+||++++-..+-++-+. +.|||||-+|+.-
T Consensus 599 ~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 599 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred CCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 1 011111000000000000000011 1112121 12 366789999998777777666 5899999999874
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=95.92 E-value=0.081 Score=53.77 Aligned_cols=121 Identities=14% Similarity=0.178 Sum_probs=70.1
Q ss_pred HHHHHHHcCCCcceEEecccccC------C---cceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCC-c
Q 021825 7 FVRTFREKGIPCDVIWMDIDYMD------G---FRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDG-Y 72 (307)
Q Consensus 7 ~~~~~~~~~iP~d~i~lD~~w~~------~---~~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~-~ 72 (307)
+++.+++. .+..|+|-+=... + .+.|..+ .+|.. ++.||+.+|++|++|++-+.| ++..+.. .
T Consensus 275 ll~ylk~L--Gvt~I~LmPi~e~~~~~~wGY~~~~~~a~~-~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l 351 (730)
T PRK12568 275 LIPYVQQL--GFTHIELLPITEHPFGGSWGYQPLGLYAPT-ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGL 351 (730)
T ss_pred HHHHHHHc--CCCEEEECccccCCCCCCCCCCCCcCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccccc
Confidence 34555554 4555765432110 1 1235554 46765 689999999999999997665 3333211 0
Q ss_pred cccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCC
Q 021825 73 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~ 136 (307)
..|+ + ..++ ...+...-....|. ...+|+.+|+++++..+.++..+ +.|||||-+|.-
T Consensus 352 ~~fd-g--~~~Y-e~~d~~~g~~~~W~--~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 352 AQFD-G--AALY-EHADPREGMHRDWN--TLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred ccCC-C--cccc-ccCCCcCCccCCCC--CeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 1111 0 0111 11111000112343 23579999999999988888876 579999999964
No 62
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=95.86 E-value=0.068 Score=54.50 Aligned_cols=125 Identities=15% Similarity=0.195 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCCcceEEeccccc----C--Cc---ceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCC--
Q 021825 6 EFVRTFREKGIPCDVIWMDIDYM----D--GF---RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHED-- 70 (307)
Q Consensus 6 ~~~~~~~~~~iP~d~i~lD~~w~----~--~~---~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~-- 70 (307)
+.+..+++.| +++|+|=+=+. . ++ ..|..+ .+|.. ++.||+.+|++|++|++-+.+ +++.+.
T Consensus 255 ~~L~ylk~LG--~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~ 331 (758)
T PLN02447 255 DVLPRIKALG--YNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLD 331 (758)
T ss_pred HHHHHHHHcC--CCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccc
Confidence 4566666555 45576554221 1 11 225554 46755 689999999999999997665 444322
Q ss_pred CccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-cCccEEEecCCCCc
Q 021825 71 GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPA 139 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~~e~~ 139 (307)
+...|+ +....+|-.+..|. ...|. ...+|+.+|+++++..+.++..++ .+||||-+|.....
T Consensus 332 gl~~fD-g~~~~Yf~~~~~g~---~~~w~--~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~sm 395 (758)
T PLN02447 332 GLNGFD-GTDGSYFHSGPRGY---HWLWD--SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSM 395 (758)
T ss_pred cccccC-CCCccccccCCCCC---cCcCC--CceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhh
Confidence 111222 22233443322221 12342 335899999999999998888774 79999999976543
No 63
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.85 E-value=0.11 Score=53.36 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHcCCCcceEEecccccC------Cc---ceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCCc-cc
Q 021825 9 RTFREKGIPCDVIWMDIDYMD------GF---RCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDGY-FV 74 (307)
Q Consensus 9 ~~~~~~~iP~d~i~lD~~w~~------~~---~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~-~~ 74 (307)
+.+++ +.+.+|+|-+=... ++ ..|..++ +|-. ++.||+.+|++|++|++-+.| +...+... ..
T Consensus 273 ~ylk~--LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 349 (726)
T PRK05402 273 PYVKE--MGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLAR 349 (726)
T ss_pred HHHHH--cCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhc
Confidence 44555 55666877643221 11 1245543 4554 689999999999999997665 33332211 01
Q ss_pred cccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-cCccEEEecCCC
Q 021825 75 YDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 137 (307)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~~e 137 (307)
|+ + ...+...++. .. ....|.+ ..+|+.||+++++..+.++..++ .|||||-+|...
T Consensus 350 ~~-~-~~~y~~~~~~-~~-~~~~w~~--~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~ 407 (726)
T PRK05402 350 FD-G-TALYEHADPR-EG-EHPDWGT--LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVA 407 (726)
T ss_pred cC-C-CcceeccCCc-CC-ccCCCCC--ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHH
Confidence 11 0 0011111110 00 0112322 35799999999999888888774 799999999643
No 64
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=95.84 E-value=0.043 Score=58.27 Aligned_cols=86 Identities=22% Similarity=0.226 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHCCCeEEeecCC-ccccCCCccccccccccceeE-EcCCCCceeeeecCCCccCCCCCChHHHHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 120 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l 120 (307)
++++||+.||++|++||+-+.+ +....+ .|+. ...++|. .+.+|.+.. .|.| .-++..||.++++..+.+
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~---~f~~-~~p~Yy~~~~~~G~~~~--~~~g--~~l~~e~~~vrk~iiDsl 627 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVY---IFED-LEPNYYHFMDADGTPRT--SFGG--GRLGTTHEMSRRILVDSI 627 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccc---cccc-cCCCceEeeCCCCCccc--ccCC--CCCCcCCHHHHHHHHHHH
Confidence 4899999999999999987654 333322 2332 2334443 334554432 2222 337888999999998888
Q ss_pred HHHh-hcCccEEEecCC
Q 021825 121 KDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 121 ~~l~-~~Gvdg~w~D~~ 136 (307)
+.+. +.|||||-+|..
T Consensus 628 ~yWv~ey~VDGFRfDl~ 644 (1111)
T TIGR02102 628 KYLVDEFKVDGFRFDMM 644 (1111)
T ss_pred HHHHHhcCCcEEEEecc
Confidence 8876 589999999964
No 65
>PLN03244 alpha-amylase; Provisional
Probab=95.63 E-value=0.035 Score=56.26 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=60.1
Q ss_pred CCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCCcc--ccccccccceeEEcCCCCceeeeecCCCccCCCCCChHH
Q 021825 39 ERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDGYF--VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKV 112 (307)
Q Consensus 39 ~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a 112 (307)
.+|-. ++.||+.+|++|++|++-+.+ +...+.... .|+ +....+|-....|. ...| | +..+|+.+|++
T Consensus 435 sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fD-Gt~~~Yf~~~~~g~---~~~W-G-s~~fnyg~~EV 508 (872)
T PLN03244 435 SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFD-GSNDCYFHTGKRGH---HKHW-G-TRMFKYGDLDV 508 (872)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcC-CCccceeccCCCCc---cCCC-C-CceecCCCHHH
Confidence 35544 689999999999999997655 444332111 121 22222333222221 1245 2 25689999999
Q ss_pred HHHHHHHHHHHh-hcCccEEEecCCC
Q 021825 113 RSWWGSLVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 113 ~~ww~~~l~~l~-~~Gvdg~w~D~~e 137 (307)
+++..+.++-.+ +.+||||-+|.-.
T Consensus 509 r~FLLsna~yWleEyhIDGFRfDaVt 534 (872)
T PLN03244 509 LHFLISNLNWWITEYQIDGFQFHSLA 534 (872)
T ss_pred HHHHHHHHHHHHHHhCcCcceeecch
Confidence 999988888876 6899999999653
No 66
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=95.58 E-value=0.067 Score=54.04 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHCCCeEEeecC-CccccC---CCccccccccccc-eeEEcCCCCceeeeecCCCccCCCCCChHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLD-PGIKHE---DGYFVYDSGSKID-VWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWG 117 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~-P~i~~~---~~~~~~~~~~~~~-~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 117 (307)
.+|.||+.||+.|+.||+-|. .+.... .+-..++ +..+. |+..+++|.. ..+.|.+--+.-+||-+++|.-
T Consensus 266 EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~-~id~~~Yyr~~~dg~~---~N~TGcGNtln~~hpmvrk~iv 341 (697)
T COG1523 266 EFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFR-GIDPNYYYRLDPDGYY---SNGTGCGNTLNTEHPMVRKLIV 341 (697)
T ss_pred HHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccc-cCCcCceEEECCCCCe---ecCCccCcccccCChHHHHHHH
Confidence 468999999999999998653 333210 0111222 34444 4455666432 1234444458889999999999
Q ss_pred HHHHHHh-hcCccEEEecCC
Q 021825 118 SLVKDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 118 ~~l~~l~-~~Gvdg~w~D~~ 136 (307)
+.|+.+. +++||||-+|..
T Consensus 342 DsLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 342 DSLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred HHHHHHHHHhCCCceeecch
Confidence 9998876 589999999987
No 67
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.071 Score=52.77 Aligned_cols=124 Identities=26% Similarity=0.333 Sum_probs=72.5
Q ss_pred cCCCcceEEecccccCC-------cceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCCcccc-CCCcccccccccc-
Q 021825 14 KGIPCDVIWMDIDYMDG-------FRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDPGIKH-EDGYFVYDSGSKI- 81 (307)
Q Consensus 14 ~~iP~d~i~lD~~w~~~-------~~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P~i~~-~~~~~~~~~~~~~- 81 (307)
++++++++|+-+-.... ..++..=..+|.. ++++++.+|+.|+++|+-+.|.-.. +..++.-....+.
T Consensus 50 ~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~ 129 (545)
T KOG0471|consen 50 KELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTG 129 (545)
T ss_pred HhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCcccccc
Confidence 45788999998766432 2343333367764 6899999999999999876553222 1111110000111
Q ss_pred --ceeEEcCCC-----C---c------eeeeecC----------CC----ccCCCCCChHHHHHHHHHHHH-HhhcCccE
Q 021825 82 --DVWIQKADG-----T---P------FIGEVWP----------GP----CVFPDYTQSKVRSWWGSLVKD-FIYNGVDG 130 (307)
Q Consensus 82 --~~~~~~~~g-----~---~------~~~~~w~----------g~----~~~~Dftnp~a~~ww~~~l~~-l~~~Gvdg 130 (307)
+++.-...+ + | ..+..|+ +. ..=+|+.||++++-+++.++. ..+.||||
T Consensus 130 y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~~gvdG 209 (545)
T KOG0471|consen 130 YEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLEKGVDG 209 (545)
T ss_pred ceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Confidence 122211110 0 0 1122232 11 223678899999999999994 55899999
Q ss_pred EEecCCC
Q 021825 131 IWNDMNE 137 (307)
Q Consensus 131 ~w~D~~e 137 (307)
|-+|...
T Consensus 210 fRiD~v~ 216 (545)
T KOG0471|consen 210 FRIDAVK 216 (545)
T ss_pred EEEEccc
Confidence 9999875
No 68
>PRK09505 malS alpha-amylase; Reviewed
Probab=95.43 E-value=0.17 Score=51.31 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHhh-cCccEEEecCCC
Q 021825 109 QSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 137 (307)
Q Consensus 109 np~a~~ww~~~l~~l~~-~Gvdg~w~D~~e 137 (307)
||++++...+.++..++ .|||||-+|...
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaak 464 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTAK 464 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEechH
Confidence 56888988888888774 799999999764
No 69
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=95.16 E-value=0.16 Score=50.62 Aligned_cols=127 Identities=21% Similarity=0.309 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCC------CcceEEeccccc-CCcceeeecCCCCCC---hHHHHHHHHHCCCeEEeecCC-ccccCCC
Q 021825 3 LIREFVRTFREKGI------PCDVIWMDIDYM-DGFRCFTFDKERFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDG 71 (307)
Q Consensus 3 ~v~~~~~~~~~~~i------P~d~i~lD~~w~-~~~~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P-~i~~~~~ 71 (307)
-+.+.+..+++.|| |+.-+=.|-+|. ...+.|.. ..+|-. ++.+|+.+|++|+-|++-+.| ++.++..
T Consensus 166 ~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp-~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~ 244 (628)
T COG0296 166 LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAP-TSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGN 244 (628)
T ss_pred HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccc-cccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc
Confidence 35667777777773 444444555553 22344666 568876 478999999999999986555 5555443
Q ss_pred cc-ccccccccceeEEcCCCCceee--eecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCCC
Q 021825 72 YF-VYDSGSKIDVWIQKADGTPFIG--EVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 138 (307)
Q Consensus 72 ~~-~~~~~~~~~~~~~~~~g~~~~~--~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e~ 138 (307)
|. .|+ ...+-...+ |..+ ..| ....-|+.++++|.+.-+.....+ +..|||+-+|.-.-
T Consensus 245 ~L~~fd----g~~~~e~~~--~~~~~~~~W--g~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~s 307 (628)
T COG0296 245 YLARFD----GTFLYEHED--PRRGEHTDW--GTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVAS 307 (628)
T ss_pred hhhhcC----CccccccCC--cccccCCCc--ccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhh
Confidence 31 111 001111111 1111 123 223334449999999877766544 68999999997643
No 70
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=95.08 E-value=0.089 Score=54.73 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHCCCeEEeecCC-ccccCCCc--cccccccccceeEEc-CCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGY--FVYDSGSKIDVWIQK-ADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 118 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~--~~~~~~~~~~~~~~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 118 (307)
++++||+.||++|++|++-+.. ++...... ..++. ...++|.+. .+|......++ .-++..||.++++..+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~-~~P~YY~r~~~~G~~~n~~~~----~d~a~e~~~Vrk~iiD 479 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDK-IVPGYYHRLNEDGGVENSTCC----SNTATEHRMMAKLIVD 479 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccccccCccCcccccc-cCcHhhEeeCCCCCeecCCCC----cCCCCCCHHHHHHHHH
Confidence 5889999999999999986543 33321110 11221 223455443 23321111122 2246789999999999
Q ss_pred HHHHHh-hcCccEEEecCC
Q 021825 119 LVKDFI-YNGVDGIWNDMN 136 (307)
Q Consensus 119 ~l~~l~-~~Gvdg~w~D~~ 136 (307)
.++... +.|||||-+|.-
T Consensus 480 sl~~W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 480 SLVVWAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHHHHHcCCCEEEEech
Confidence 888876 689999999955
No 71
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=94.61 E-value=0.13 Score=46.09 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCc--ceeeecCCCC--CChHHHHHHHHHCCCeEEeecC
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGF--RCFTFDKERF--PDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~--~~f~~d~~~F--Pd~~~~~~~l~~~G~k~~~~~~ 63 (307)
+..+++|+-..++||+. +.+|.+|.... ..+++. +.. .+++++++.-+++|+++.+|.+
T Consensus 32 ~~~k~yIDfAa~~G~eY--vlvD~GW~~~~~~~~~d~~-~~~~~~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEY--VLVDAGWYGWEKDDDFDFT-KPIPDFDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp HHHHHHHHHHHHTT-SE--EEEBTTCCGS--TTT--TT--B-TT--HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHcCCCE--EEecccccccccccccccc-ccCCccCHHHHHHHHHHcCCCEEEEEe
Confidence 45678888888888887 66799996421 122221 122 4689999999999999999976
No 72
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=94.29 E-value=0.32 Score=48.04 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCc-ceeeecC----CCCCC----------hHHHHHHHHHCCCeEEeecCCcc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGF-RCFTFDK----ERFPD----------PKSLAADLHLNGFKAIWMLDPGI 66 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~-~~f~~d~----~~FPd----------~~~~~~~l~~~G~k~~~~~~P~i 66 (307)
++..+.++++.+..|.. +..= ||+..+ ..+--+. ..|+| .++.|+.+|+.|+|.+...--+
T Consensus 118 ~~~~~~i~~L~~yHIN~--~QFY-DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiy- 193 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHING--LQFY-DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIY- 193 (559)
T ss_dssp HHHHHHHHHHHHTT--E--EEET-S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESS-
T ss_pred hhHHHHHHHHHhhCcCe--EEEE-eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhh-
Confidence 45678888888866654 3322 444221 1111111 34444 5799999999999998874322
Q ss_pred ccCCCccccccccccce-eEEcCCCCc---e-eeeecCCCccCCCCCChHHHHHHHHHHHHHh-hcCccEEEecCCCCcc
Q 021825 67 KHEDGYFVYDSGSKIDV-WIQKADGTP---F-IGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAV 140 (307)
Q Consensus 67 ~~~~~~~~~~~~~~~~~-~~~~~~g~~---~-~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~-~~Gvdg~w~D~~e~~~ 140 (307)
....+|. ..+....+ +.++..+.. + ++..|+....+.|..||+=++++-+++++.+ ..|||||-+|.=-..
T Consensus 194 aa~~~~~--~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~- 270 (559)
T PF13199_consen 194 AANNNYE--EDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNR- 270 (559)
T ss_dssp EEETT----S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--E-
T ss_pred ccccCcc--cccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCC-
Confidence 2222221 12233222 233333321 1 2334665567899999998888888888766 489999999963210
Q ss_pred cCCCCCCCCCCc-ccCCCCCCCCccccc-cccchhHHHHHHHHHHHHHhhcCCCCcEEEEccccCCC--------C--cc
Q 021825 141 FKSVTKTMPESN-IHRGDDEIGGCQNHS-YYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS--------Q--RY 208 (307)
Q Consensus 141 ~~~~~~~~p~~~-~~~~~~~~~~~~~~~-~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~--------q--r~ 208 (307)
... ...| . .. .+...|.-+.. ++++..+++ ++++---+.-|. + -|
T Consensus 271 ---------~~~~d~~G-----~---~i~~l~~~y~~Fi~-----~~K~~~~~k-~lv~N~V~~~g~~~~a~~~~~d~lY 327 (559)
T PF13199_consen 271 ---------GTVYDYDG-----N---KIYDLSDGYASFIN-----AMKEALPDK-YLVFNAVSGYGIEQIAKTSKVDFLY 327 (559)
T ss_dssp ---------EEEGGTT-----------GGECHHHHHHHHH-----HHHHHSTTS-EEEEB-GGGTTHHHHTT-S--SSEE
T ss_pred ---------CccccCCC-----C---CchhhHHHHHHHHH-----HHHHhCCCC-ceeeeccCccchhhhhcccccceee
Confidence 000 0111 1 11 34555544422 334444444 466643322222 2 23
Q ss_pred eeeecCCCCCCchHHHHHHHHHHHh
Q 021825 209 AATWTGDNVSNWEHLHMSISMVLQL 233 (307)
Q Consensus 209 ~~~w~GD~~s~W~~L~~~i~~~l~~ 233 (307)
.=+| +...+...|+..|...=..
T Consensus 328 ~EvW--~~~~~Y~~Lk~~i~~~r~~ 350 (559)
T PF13199_consen 328 NEVW--DDYDTYGDLKRIIDQNRKY 350 (559)
T ss_dssp EE----SBS-BHHHHHHHHHHHHHH
T ss_pred eecc--cccccHHHHHHHHHHHhhh
Confidence 3488 6677888898888776655
No 73
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=94.09 E-value=0.31 Score=43.40 Aligned_cols=108 Identities=23% Similarity=0.344 Sum_probs=66.3
Q ss_pred cCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccc-c---cccccceeEEcCC
Q 021825 14 KGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVY-D---SGSKIDVWIQKAD 89 (307)
Q Consensus 14 ~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~-~---~~~~~~~~~~~~~ 89 (307)
++-|+|.+++|.+|.+. ..=|-.++=++.+++-|.+++-.++ |....+|..| + ....+++ +-..|
T Consensus 40 ~~~~f~llVVDps~~g~--------~~~~~~~eelr~~~~gg~~pIAYls--Ig~ae~yR~Ywd~~w~~~~p~w-Lg~ed 108 (300)
T COG2342 40 LNSPFDLLVVDPSYCGP--------FNTPWTIEELRTKADGGVKPIAYLS--IGEAESYRFYWDKYWLTGRPDW-LGEED 108 (300)
T ss_pred hcCCCcEEEEeccccCC--------CCCcCcHHHHHHHhcCCeeEEEEEe--chhhhhhhhHhhhhhhcCCccc-ccCCC
Confidence 45688999999877422 1123456677777888877776655 2222333322 1 1112222 21111
Q ss_pred CCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCCCc
Q 021825 90 GTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPA 139 (307)
Q Consensus 90 g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e~~ 139 (307)
..|||... +-|=.|+=++-+++.++++.+.||||+-+|--++-
T Consensus 109 ------P~W~Gny~-VkYW~~eWkdii~~~l~rL~d~GfdGvyLD~VD~y 151 (300)
T COG2342 109 ------PEWPGNYA-VKYWEPEWKDIIRSYLDRLIDQGFDGVYLDVVDAY 151 (300)
T ss_pred ------CCCCCCce-eeccCHHHHHHHHHHHHHHHHccCceEEEeeechH
Confidence 24888642 35566777777888889999999999999987653
No 74
>PRK13840 sucrose phosphorylase; Provisional
Probab=93.90 E-value=1.3 Score=43.29 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=73.4
Q ss_pred hHHHHHHHH-HHHcCCCcceEEecccccC--C----c--ce-eeecCCCCCChHHHHHHHHHCCCeEEeecCC-ccccCC
Q 021825 2 ILIREFVRT-FREKGIPCDVIWMDIDYMD--G----F--RC-FTFDKERFPDPKSLAADLHLNGFKAIWMLDP-GIKHED 70 (307)
Q Consensus 2 ~~v~~~~~~-~~~~~iP~d~i~lD~~w~~--~----~--~~-f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P-~i~~~~ 70 (307)
+.|.+.++. ++. + ++.|||-+-+.. . + .| +.+|+ +|-+.+++.+-++ |+|+|+-+.+ +++.++
T Consensus 20 ~gl~~kLd~yL~~--l-v~~vhllPff~psp~sD~GYdv~DY~~VDP-~fGt~eDf~~L~~--giklmlDlV~NHtS~~h 93 (495)
T PRK13840 20 KSLTALLDGRLDG--L-FGGVHILPFFYPIDGADAGFDPIDHTKVDP-RLGDWDDVKALGK--THDIMADLIVNHMSAES 93 (495)
T ss_pred hHHHHHHHHHHHH--H-hCeEEECCCccCCCCCCCCCCCcChhhcCc-ccCCHHHHHHHHh--CCeEEEEECCCcCCCCc
Confidence 345666664 433 5 899998876621 1 1 22 33553 6777666555553 8999976543 445444
Q ss_pred Cccccccc-------cccceeEEcC-------------------CCCcee---------eeecCCC---ccCCCCCChHH
Q 021825 71 GYFVYDSG-------SKIDVWIQKA-------------------DGTPFI---------GEVWPGP---CVFPDYTQSKV 112 (307)
Q Consensus 71 ~~~~~~~~-------~~~~~~~~~~-------------------~g~~~~---------~~~w~g~---~~~~Dftnp~a 112 (307)
.+| .+. .-.++|+... .|.++. ..+|..- ..=+|+.||++
T Consensus 94 ~WF--qd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V 171 (495)
T PRK13840 94 PQF--QDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAG 171 (495)
T ss_pred HHH--HHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHH
Confidence 322 211 1123444211 011111 1133221 12367889999
Q ss_pred HHHHHHHHHHHhhcCccEEEecCC
Q 021825 113 RSWWGSLVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 113 ~~ww~~~l~~l~~~Gvdg~w~D~~ 136 (307)
++...+.++.+.+.|||||-+|.-
T Consensus 172 ~~~i~~il~fwl~~GVDgfRLDAv 195 (495)
T PRK13840 172 WEYLMSILDRFAASHVTLIRLDAA 195 (495)
T ss_pred HHHHHHHHHHHHHCCCCEEEEech
Confidence 999999999988999999999974
No 75
>PLN02877 alpha-amylase/limit dextrinase
Probab=93.58 E-value=0.3 Score=51.15 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHCCCeEEeecCC-ccccCCC---ccccccccccceeEE-cCCCCceeeeecCCCccCCCCCChHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP-GIKHEDG---YFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWG 117 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P-~i~~~~~---~~~~~~~~~~~~~~~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 117 (307)
++++||+.||++|++|++-+.. +...... ...++ ....++|.+ +.+|..-...|. .-..-.++.++++..
T Consensus 467 efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld-~~vP~YY~r~~~~G~~~ns~c~----n~~Ase~~mvrklIl 541 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLD-KIVPGYYLRRNSDGFIENSTCV----NNTASEHYMVDRLIV 541 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhccc-CCCCCceEEECCCCCcccCCcc----CCCccCCHHHHHHHH
Confidence 3899999999999999987653 3321110 01122 233456555 344432111111 123446788999988
Q ss_pred HHHHHHh-hcCccEEEecCCC
Q 021825 118 SLVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 118 ~~l~~l~-~~Gvdg~w~D~~e 137 (307)
+.++... +.|||||-+|...
T Consensus 542 Dsl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 542 DDLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred HHHHHHHHHhCCCEEEEEccc
Confidence 8888766 6999999999764
No 76
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=93.21 E-value=0.27 Score=49.26 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHCCCeEEeec-CCccccC--CCccccccccc-cceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHH
Q 021825 43 DPKSLAADLHLNGFKAIWML-DPGIKHE--DGYFVYDSGSK-IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 118 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~-~P~i~~~--~~~~~~~~~~~-~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 118 (307)
++|.||+.+|.+|+-|++-| +-+.+.+ .+...++ |.. ..||-..+. +..+.+.+...+..+|++.+...+
T Consensus 312 efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fd-Gid~~~Yf~~~~r-----~~h~~~~~r~fn~~~~~V~rflL~ 385 (757)
T KOG0470|consen 312 EFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFD-GIDNSVYFHSGPR-----GYHNSWCSRLFNYNHPVVLRFLLS 385 (757)
T ss_pred HHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhcc-CcCCceEEEeCCc-----ccccccccccccCCCHHHHHHHHH
Confidence 68999999999999988754 3343332 2333333 445 344444442 223334556789999999999888
Q ss_pred HHHHHh-hcCccEEEecCCC
Q 021825 119 LVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 119 ~l~~l~-~~Gvdg~w~D~~e 137 (307)
.++..+ ++.||||-+|...
T Consensus 386 nLr~WVtEY~vDGFRFD~~s 405 (757)
T KOG0470|consen 386 NLRWWVTEYHVDGFRFDLVS 405 (757)
T ss_pred HHHHHHHheeccceEEcchh
Confidence 888766 6899999999764
No 77
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=90.01 E-value=1.4 Score=41.43 Aligned_cols=123 Identities=18% Similarity=0.131 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccc---cCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDY---MDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 78 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w---~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~ 78 (307)
+++.+.++.+++.|+.+=.|. ...| ....+.|+|+ .++.+++.+++.|+|+++.+.....+ .+ +.+
T Consensus 10 e~~~~d~~~m~~~G~n~vri~-~~~W~~lEP~eG~ydF~-----~lD~~l~~a~~~Gi~viL~~~~~~~P--~W-l~~-- 78 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIG-EFSWSWLEPEEGQYDFS-----WLDRVLDLAAKHGIKVILGTPTAAPP--AW-LYD-- 78 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE--CCEHHHH-SBTTB---H-----HHHHHHHHHHCTT-EEEEEECTTTS---HH-HHC--
T ss_pred HHHHHHHHHHHHcCCCEEEEE-EechhhccCCCCeeecH-----HHHHHHHHHHhccCeEEEEecccccc--cc-hhh--
Confidence 578899999999988775432 2344 2233445443 38999999999999999865422111 01 111
Q ss_pred cccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-----cCccEEEecCCCCcc
Q 021825 79 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-----NGVDGIWNDMNEPAV 140 (307)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-----~Gvdg~w~D~~e~~~ 140 (307)
...+....+.+|.... .|.....++.+|..++.....++.+.+ -.|-||-+| ||+..
T Consensus 79 ~~Pe~~~~~~~g~~~~----~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~ 140 (374)
T PF02449_consen 79 KYPEILPVDADGRRRG----FGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGY 140 (374)
T ss_dssp CSGCCC-B-TTTSBEE----CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTC
T ss_pred hcccccccCCCCCcCc----cCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCc
Confidence 1223334445554321 233344678899998887777766542 247788887 78754
No 78
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=88.11 E-value=4.6 Score=39.26 Aligned_cols=130 Identities=13% Similarity=0.183 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC----c--ce-eeecCCCCCChHHHHHHHHHCCCeEEeecCC-ccccCCCcc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG----F--RC-FTFDKERFPDPKSLAADLHLNGFKAIWMLDP-GIKHEDGYF 73 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~----~--~~-f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~ 73 (307)
.++..+++++-+.+ +++|||-+-+-.. + .| ...|+ +|-+.+++.+-+++ +|+++-+.+ +++.++.+|
T Consensus 17 gdl~g~l~~yL~~~--v~~i~LlPffps~sD~GYdv~DY~~VDP-~~Gt~~Df~~L~~~--~kvmlDlV~NHtS~~h~WF 91 (470)
T TIGR03852 17 KELNKVLENYFKDA--VGGVHLLPFFPSTGDRGFAPMDYTEVDP-AFGDWSDVEALSEK--YYLMFDFMINHISRQSEYY 91 (470)
T ss_pred hhHHHHHHHHHHHh--CCEEEECCCCcCCCCCCcCchhhceeCc-ccCCHHHHHHHHHh--hhHHhhhcccccccchHHH
Confidence 46778888777663 8999988755321 1 23 33543 66666665555554 566654332 333333221
Q ss_pred cc--c---cccccceeEEc----CC----------------CCceee---------eecC---CCccCCCCCChHHHHHH
Q 021825 74 VY--D---SGSKIDVWIQK----AD----------------GTPFIG---------EVWP---GPCVFPDYTQSKVRSWW 116 (307)
Q Consensus 74 ~~--~---~~~~~~~~~~~----~~----------------g~~~~~---------~~w~---g~~~~~Dftnp~a~~ww 116 (307)
.- + +..-.++|+.- ++ ..++.. .+|- ....=+||.||++++..
T Consensus 92 q~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i 171 (470)
T TIGR03852 92 QDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFI 171 (470)
T ss_pred HHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHH
Confidence 10 0 01113445511 00 011111 1121 11223678999999999
Q ss_pred HHHHHHHhhcCccEEEecCC
Q 021825 117 GSLVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 117 ~~~l~~l~~~Gvdg~w~D~~ 136 (307)
.+.++.+.+.|||||-+|.-
T Consensus 172 ~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 172 RDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred HHHHHHHHHcCCCEEEEecc
Confidence 99999988999999999976
No 79
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=87.70 E-value=6.8 Score=40.15 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~ 29 (307)
+-|.+=++.+.+-|+|...+.||++|+.
T Consensus 239 ~GV~~Gv~~l~~gG~pprfvIIDDGWQs 266 (865)
T PLN02982 239 VGVWHGVKEFAEGGVPPRFLIIDDGWQS 266 (865)
T ss_pred HHHHHHHHHHhcCCCCccEEEEecchhh
Confidence 4577889999999999999999999983
No 80
>smart00642 Aamy Alpha-amylase domain.
Probab=87.17 E-value=1.8 Score=35.81 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCC--------c--ce-eeecCCCCC---ChHHHHHHHHHCCCeEEeecCC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDG--------F--RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~--------~--~~-f~~d~~~FP---d~~~~~~~l~~~G~k~~~~~~P 64 (307)
.|.+.++.+++ +.+++|||-+-+... + .+ +..++ +|- ++++|++.+|++|+++++-+.|
T Consensus 20 gi~~~l~yl~~--lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 20 GIIEKLDYLKD--LGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHH--CCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 34555555555 557889987654322 1 12 23332 444 3789999999999999987665
No 81
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=85.88 E-value=4.1 Score=40.97 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=26.3
Q ss_pred CCCCChH--HHHHHH-HHHHHHhhcCccEEEecCC
Q 021825 105 PDYTQSK--VRSWWG-SLVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 105 ~Dftnp~--a~~ww~-~~l~~l~~~Gvdg~w~D~~ 136 (307)
++|.||. +++-.. +.+..+.+.|++||-+|.+
T Consensus 262 LNw~dPs~av~~~~~gdal~~w~~lG~~GfRLDAv 296 (688)
T TIGR02455 262 LNWLDPTFAAQQLIIGDALHAIDCLGARGLRLDAN 296 (688)
T ss_pred cCccCccHHHHHHHHHHHHHHHHHhccccceeccc
Confidence 6788999 887655 6677778999999999975
No 82
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=85.47 E-value=8.1 Score=35.98 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCc-------ceeeecCCCC-CC-hHHHHHHHHHCCCeEEeecCCccccCCCccc
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGF-------RCFTFDKERF-PD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFV 74 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~-------~~f~~d~~~F-Pd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~ 74 (307)
..+.++.++++|+..-++. ..+.+++ .+|+.-..-+ -| .+++++.+|+.|+|+++..+|. .-..+ .
T Consensus 93 ~dqW~~~ak~aGakY~VlT--akHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~~--~ 167 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLT--AKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHHP--D 167 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEE--EE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCCT--T
T ss_pred HHHHHHHHHHcCCCEEEee--hhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcCc--c
Confidence 4567778888888775554 2232222 2222111111 13 4788888888888888877765 21111 1
Q ss_pred cccccccceeEEcCCCCceeeeecCCCccCCCCCChH-HHHHHHHHHHHHh-hcCccEEEecCCCC
Q 021825 75 YDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSK-VRSWWGSLVKDFI-YNGVDGIWNDMNEP 138 (307)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~-a~~ww~~~l~~l~-~~Gvdg~w~D~~e~ 138 (307)
+........ .+ + .. ..-..++ ..++|..++++|+ ++.+|.+|+|.+-+
T Consensus 168 ~~~~~~~~~-----~~-~--------~~--~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~ 217 (346)
T PF01120_consen 168 YPPDEEGDE-----NG-P--------AD--GPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP 217 (346)
T ss_dssp TTSSCHCHH-----CC-----------H--CCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS
T ss_pred cCCCccCCc-----cc-c--------cc--cchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC
Confidence 110000000 00 0 00 0000022 2347888899987 47999999998754
No 83
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=82.85 E-value=3.1 Score=30.02 Aligned_cols=55 Identities=24% Similarity=0.503 Sum_probs=37.4
Q ss_pred ccceeEEcCCCCceeeeecCCCc---cCCCCCChHHHHHHHHHHHH-HhhcCccEEEecCC
Q 021825 80 KIDVWIQKADGTPFIGEVWPGPC---VFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMN 136 (307)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~w~g~~---~~~Dftnp~a~~ww~~~l~~-l~~~Gvdg~w~D~~ 136 (307)
...++.++.+|+- + ..|+|.. -..+..+|..|+||.+.+.+ +...++||+.+|..
T Consensus 18 ~~~w~a~~~~g~~-i-~~W~~~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 18 RADWFAKTANGSR-I-SEWPGYPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred CchhhccccCccc-e-eecCCCCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 3445566666643 2 4565543 23566779999999988875 44679999999964
No 84
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=82.59 E-value=16 Score=37.23 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEe--cccccCCcceeeecCCCCCC---------hHHHHHH-HHHCCCeEEeecCCc-ccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWM--DIDYMDGFRCFTFDKERFPD---------PKSLAAD-LHLNGFKAIWMLDPG-IKH 68 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~l--D~~w~~~~~~f~~d~~~FPd---------~~~~~~~-l~~~G~k~~~~~~P~-i~~ 68 (307)
+++.++++++++.|+.-=.+.. |++ ++=.++...||+ +..+.=. -|+.|+|+--|+.|. +..
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~-----gd~~~~s~yfP~~~lp~r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPD-----GDGLVKELYFPNRLLPMRADLFNRVAWQLRTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCC-----CCccccccccCccccccccCCcCHHHHHHHHhhCCEEEEeccceeecc
Confidence 4677889999888876544443 322 333344455554 2222222 467799999999986 443
Q ss_pred CCCccccccccccceeEEcCCCCce-eeeecCCCccCCCCCChHHHHHHHHHHHHHhh-cCccEEEecC
Q 021825 69 EDGYFVYDSGSKIDVWIQKADGTPF-IGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 135 (307)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~ 135 (307)
..+...-. +. +.++.+. +..-|.+. +|.+.|++|+|.++..+.+.. ..|||+-+|-
T Consensus 409 ~~~~~~~~---~~-----~~~~~~~~~~~~~~~r---l~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 409 DPTLPRVK---RL-----DTGEGKAQIHPEQYRR---LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred CCCcchhh---hc-----cccCCccccCCCCCcC---CCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 22211111 10 1111111 11123222 899999999999999999886 5899998864
No 85
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=81.36 E-value=2.3 Score=39.16 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC-CcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCC
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD-GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG 71 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~ 71 (307)
+.-++.++++++.|+.+=.+.+-+.+.. ..+.|+|.. .-|+..+++..++.|++|++..-|+|+.+..
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g--~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~ 92 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTG--NRDLDRFLDLAQENGLYVILRPGPYICAEWD 92 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SG--GG-HHHHHHHHHHTT-EEEEEEES---TTBG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccc--hhhHHHHHHHHHHcCcEEEecccceeccccc
Confidence 3457889999999998877776665543 345566642 3689999999999999999999999998654
No 86
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.17 E-value=8.5 Score=26.32 Aligned_cols=57 Identities=14% Similarity=0.447 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEe
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIW 60 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~ 60 (307)
.+.++.+.+.++++.+..+.....-..+.....+.-+. +++..+.+.|+++|+++.+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeeeC
Confidence 56788899999999999887553212233333333222 5677999999999998764
No 87
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.12 E-value=6.8 Score=35.86 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeec-CCccccCCCccccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWML-DPGIKHEDGYFVYDSGSK 80 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~-~P~i~~~~~~~~~~~~~~ 80 (307)
++|..+++.+|+.+|-+.+++|- .| .++ |-...+.++|..+|+++-+.. .+.-..+-+--+-++|..
T Consensus 92 ~dV~RLID~frel~~~v~sVViT-qy----------ed~-p~a~aF~~rLEr~Gikvy~H~~ikGYPtD~~~IvS~EG~G 159 (493)
T COG4868 92 QDVFRLIDKFRELDIKVGSVVIT-QY----------EDQ-PAADAFRTRLERNGIKVYLHYPIKGYPTDVDHIVSDEGMG 159 (493)
T ss_pred HHHHHHHHHHHhcCeeeeeEEEE-ec----------CCC-hhHHHHHHHHHhcCcceEEecccCCCCCchhheeCcccCC
Confidence 68999999999999999999986 44 223 667889999999999987643 233222222223345555
Q ss_pred cceeEEcC
Q 021825 81 IDVWIQKA 88 (307)
Q Consensus 81 ~~~~~~~~ 88 (307)
++-++++.
T Consensus 160 kN~YieTt 167 (493)
T COG4868 160 KNAYIETT 167 (493)
T ss_pred ccchhhcc
Confidence 55566543
No 88
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=72.97 E-value=42 Score=31.83 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHHHH---HHHHHHHh-hcCccEEEecCCC
Q 021825 111 KVRSWW---GSLVKDFI-YNGVDGIWNDMNE 137 (307)
Q Consensus 111 ~a~~ww---~~~l~~l~-~~Gvdg~w~D~~e 137 (307)
.-.++. ..++++|+ ++|-|.+|+|.+-
T Consensus 173 ~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 173 RFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 334454 78888888 4788999999864
No 89
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=70.16 E-value=36 Score=31.24 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHcCCCcceEEeccc--cc---CCcceeee---cCCCCC--ChHHHHHHHHHCCCeEEeecC-CccccC-
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDID--YM---DGFRCFTF---DKERFP--DPKSLAADLHLNGFKAIWMLD-PGIKHE- 69 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~--w~---~~~~~f~~---d~~~FP--d~~~~~~~l~~~G~k~~~~~~-P~i~~~- 69 (307)
+.|+++++.+...++..=.+++-++ |- ..+..++- ....+. +++++++..++.|++++.-++ |.-...
T Consensus 18 ~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~~a~ 97 (311)
T cd06570 18 AVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHASAI 97 (311)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccchHHH
Confidence 6899999999999999877776433 31 11111110 011121 478999999999999998765 532211
Q ss_pred -CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 70 -DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
..|+-+. ...+... ....|.-....+|.++|++.++.++.++++.+
T Consensus 98 ~~~ypel~---------~~~~~~~-~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 98 AVAYPELA---------SGPGPYV-IERGWGVFEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred HHhCHHhc---------cCCCccc-cccccccCCCccCCCChhHHHHHHHHHHHHHH
Confidence 1121111 0000000 01122222346899999999999999888764
No 90
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=68.98 E-value=5.2 Score=23.11 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=12.5
Q ss_pred HHHHHhhcCccEEEecC
Q 021825 119 LVKDFIYNGVDGIWNDM 135 (307)
Q Consensus 119 ~l~~l~~~Gvdg~w~D~ 135 (307)
.++.+++.||||+..|.
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 44778889999999984
No 91
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=68.42 E-value=8.5 Score=27.22 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHCCCeEEeecCC
Q 021825 43 DPKSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P 64 (307)
..++.|+.||++|.+++..++-
T Consensus 37 ~~~~~I~~L~~~G~~vicY~s~ 58 (74)
T PF03537_consen 37 FSKEEIARLKAQGKKVICYFSI 58 (74)
T ss_dssp --HHHHHHHHHTT-EEEEEEES
T ss_pred CCHHHHHHHHHCCCEEEEEEeC
Confidence 5689999999999999887663
No 92
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=67.30 E-value=21 Score=32.51 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccc--cc---CCcceee---------ecCCCC--CChHHHHHHHHHCCCeEEeecC-
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDID--YM---DGFRCFT---------FDKERF--PDPKSLAADLHLNGFKAIWMLD- 63 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~--w~---~~~~~f~---------~d~~~F--Pd~~~~~~~l~~~G~k~~~~~~- 63 (307)
+++|+++++.+...++..=.+++.++ |- ..+..++ -....+ .+++++++..++.|++++.-++
T Consensus 15 ~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEiD~ 94 (303)
T cd02742 15 VESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEIDM 94 (303)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEeccc
Confidence 46899999999999999988887754 21 1111111 001111 2478999999999999997765
Q ss_pred CccccCCCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 64 PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 64 P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
|.-...- ...+.+ +......+ ..+......+|.++|++.++.++.++++.+
T Consensus 95 PGH~~a~-~~~~p~-----l~~~~~~~-----~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~ 145 (303)
T cd02742 95 PGHSTAF-VKSFPK-----LLTECYAG-----LKLRDVFDPLDPTLPKGYDFLDDLFGEIAE 145 (303)
T ss_pred hHHHHHH-HHhCHH-----hccCcccc-----CCCCCCCCccCCCCccHHHHHHHHHHHHHH
Confidence 4321100 000100 00000011 112223356899999999999999888774
No 93
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=66.36 E-value=13 Score=32.30 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=46.5
Q ss_pred HHHHHHHHc-CCCcceEE--ecc-ccc-----CCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccC
Q 021825 6 EFVRTFREK-GIPCDVIW--MDI-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 69 (307)
Q Consensus 6 ~~~~~~~~~-~iP~d~i~--lD~-~w~-----~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~ 69 (307)
.+++.+|+. .+|+|+-. .++ .|. .+-...++-.|.-+++...++.+|+.|.|.++.++|....+
T Consensus 51 ~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~ 123 (220)
T COG0036 51 PVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLE 123 (220)
T ss_pred HHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHH
Confidence 456677775 68888754 221 111 22344677778899999999999999999999999976653
No 94
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=63.99 E-value=8 Score=35.60 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEe
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIW 60 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~ 60 (307)
+.++++|+.+++.|+|+|+|-+..-+. .+.. ...+.++++++.+.|+.+.+
T Consensus 188 ~~~~~lv~~l~~~gvpIdgIG~Q~H~~-------~~~~-~~~i~~~l~~~~~~Gl~i~I 238 (320)
T PF00331_consen 188 DAYLNLVKDLKARGVPIDGIGLQSHFD-------AGYP-PEQIWNALDRFASLGLPIHI 238 (320)
T ss_dssp HHHHHHHHHHHHTTHCS-EEEEEEEEE-------TTSS-HHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhCCCccceechhhccC-------CCCC-HHHHHHHHHHHHHcCCceEE
Confidence 468899999999999999998763221 1111 22468899999999987655
No 95
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=63.09 E-value=12 Score=31.85 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=33.4
Q ss_pred CcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccC
Q 021825 30 GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 69 (307)
Q Consensus 30 ~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~ 69 (307)
+-.-|||.-+.=.++.++++++|+.|+|+.+.+.|....+
T Consensus 87 gas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve 126 (224)
T KOG3111|consen 87 GASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVE 126 (224)
T ss_pred CcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHH
Confidence 3455888777777899999999999999999999976654
No 96
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.92 E-value=47 Score=32.12 Aligned_cols=124 Identities=9% Similarity=0.101 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccc--cc---C---------Ccceeeec-------------------CCCCC--ChH
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDID--YM---D---------GFRCFTFD-------------------KERFP--DPK 45 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~--w~---~---------~~~~f~~d-------------------~~~FP--d~~ 45 (307)
+++|+++|+.+...++..=.++|-++ |- . .++.++.. ...|. +++
T Consensus 21 ~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di~ 100 (445)
T cd06569 21 KETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADYI 100 (445)
T ss_pred HHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHHH
Confidence 36899999999999999988888654 31 0 11111111 01122 478
Q ss_pred HHHHHHHHCCCeEEeecC-CccccC------CCcccccc-cc---ccceeEEcCCC-CceeeeecCCCccCCCCCChHHH
Q 021825 46 SLAADLHLNGFKAIWMLD-PGIKHE------DGYFVYDS-GS---KIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVR 113 (307)
Q Consensus 46 ~~~~~l~~~G~k~~~~~~-P~i~~~------~~~~~~~~-~~---~~~~~~~~~~g-~~~~~~~w~g~~~~~Dftnp~a~ 113 (307)
++++..+++|+++|.-|+ |.-... ..|+-+.. +. ...+.+.++.. ..+. ...+-....+|.++|++.
T Consensus 101 eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~L~p~~~~ty 179 (445)
T cd06569 101 EILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYL-SVQFYTDNVINPCMPSTY 179 (445)
T ss_pred HHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccc-cccccccccccCCchhHH
Confidence 999999999999998775 532210 11222211 10 01122222211 1111 011112246899999999
Q ss_pred HHHHHHHHHHhh
Q 021825 114 SWWGSLVKDFIY 125 (307)
Q Consensus 114 ~ww~~~l~~l~~ 125 (307)
++.++.++++.+
T Consensus 180 ~fl~~vl~Ev~~ 191 (445)
T cd06569 180 RFVDKVIDEIAR 191 (445)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 97
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=61.92 E-value=12 Score=31.73 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCC-CChHHHHHHHHHCCCeEEeecCCc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERF-PDPKSLAADLHLNGFKAIWMLDPG 65 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~F-Pd~~~~~~~l~~~G~k~~~~~~P~ 65 (307)
+|+..+++.++..++..+.++||..... +.++.+.+.- ..++++++.+++.|.++++...+.
T Consensus 71 ~Qa~~f~~~~~~~~~~~~~i~lDiE~~~--~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 71 GQVQTFLQYLKANGIKYGTVWIDIEQNP--CQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCCceeEEEEEEecCC--CCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCcc
Confidence 5677778888777777777888866531 1122111111 125788999999999999887763
No 98
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=61.55 E-value=40 Score=30.82 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCccccccccccc
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKID 82 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~ 82 (307)
.+.++++.+.+-||.. ++|+- . +....-..++.-+..+.+.+-++.-|+|+.+.++=. ++ .+.
T Consensus 58 R~~~YARllASiGINg--vvlNN--V-Na~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFa-sP----------~~l- 120 (328)
T PF07488_consen 58 RYRDYARLLASIGING--VVLNN--V-NANPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFA-SP----------IEL- 120 (328)
T ss_dssp HHHHHHHHHHHTT--E--EE-S---S-S--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TT-HH----------HHT-
T ss_pred HHHHHHHHHhhcCCce--EEecc--c-ccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeecc-CC----------ccc-
Confidence 4556666666655554 44430 0 111123334455667888888888888888765411 10 000
Q ss_pred eeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhc--CccEE--Eec
Q 021825 83 VWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN--GVDGI--WND 134 (307)
Q Consensus 83 ~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~--Gvdg~--w~D 134 (307)
.| -.--|-..|++++||++..+++++. .+-|| |.|
T Consensus 121 ------gg-----------L~TaDPld~~V~~WW~~k~~eIY~~IPDfgGflVKAd 159 (328)
T PF07488_consen 121 ------GG-----------LPTADPLDPEVRQWWKDKADEIYSAIPDFGGFLVKAD 159 (328)
T ss_dssp ------TS------------S---TTSHHHHHHHHHHHHHHHHH-TT--EEEE--S
T ss_pred ------CC-----------cCcCCCCCHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 00 0113667799999999999998863 46666 444
No 99
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.30 E-value=35 Score=31.44 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHcCCCcceEEecccccCCccee---e--------------------ecCCCC--CChHHHHHHHHHCC
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDIDYMDGFRCF---T--------------------FDKERF--PDPKSLAADLHLNG 55 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f---~--------------------~d~~~F--Pd~~~~~~~l~~~G 55 (307)
++.|+++++.+...++..=.+++.++|.-....+ + -....+ .+++++++..++.|
T Consensus 16 ~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rg 95 (326)
T cd06564 16 MDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDRG 95 (326)
T ss_pred HHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHcC
Confidence 3689999999999999998888887663110000 0 011122 24789999999999
Q ss_pred CeEEeecC-CccccC--CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 56 FKAIWMLD-PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 56 ~k~~~~~~-P~i~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
++++.-++ |.-... ..|+... . ... .. ......+|.++|++.++.++.++++.+
T Consensus 96 I~vIPEID~PGH~~a~~~~~pel~---~------~~~------~~-~~~~~~l~~~~~~t~~f~~~l~~E~~~ 152 (326)
T cd06564 96 VNIIPEIDSPGHSLAFTKAMPELG---L------KNP------FS-KYDKDTLDISNPEAVKFVKALFDEYLD 152 (326)
T ss_pred CeEeccCCCcHHHHHHHHhhHHhc---C------CCc------cc-CCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 99997665 432110 1111100 0 000 00 123345899999999999999888764
No 100
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=61.00 E-value=14 Score=27.83 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHhhh
Q 021825 251 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFW 303 (307)
Q Consensus 251 ~~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i~l~~~ 303 (307)
+.++++..+|.++|.+-|.-. ..+-|.|+......++++.+|.+=
T Consensus 18 gi~~~~l~eLve~GlIep~~~--------~~~~~~F~~~~l~r~~~a~rL~~d 62 (101)
T PRK10265 18 GVSEEELNEIVGLGVIEPREI--------QETTWVFDDHAAIVVQRAVRLRHE 62 (101)
T ss_pred CcCHHHHHHHHHCCCeecCCC--------CcccceECHHHHHHHHHHHHHHHH
Confidence 358999999999999998442 357799998889999999988763
No 101
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=59.32 E-value=32 Score=24.00 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcc---eeeecCCCCCChHHHHHHHHHCC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFR---CFTFDKERFPDPKSLAADLHLNG 55 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~---~f~~d~~~FPd~~~~~~~l~~~G 55 (307)
+++++..-+|-.++|+++......+....+ ....+.+.++|...+++.|++++
T Consensus 18 ~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~~ 73 (73)
T cd03078 18 ECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLTSGTKISGPEKIIEYLRKQG 73 (73)
T ss_pred HHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEECCEEecChHHHHHHHHHcC
Confidence 467777788889999998875544543222 35667889999999999998864
No 102
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=59.25 E-value=18 Score=31.90 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC---hHHHHHHHHHCCCeEEe
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD---PKSLAADLHLNGFKAIW 60 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd---~~~~~~~l~~~G~k~~~ 60 (307)
.++++++.+++.|+|+|+|-+..-.. . ..|+ +++.++++.+.|+.+.+
T Consensus 137 ~~~~~v~~l~~~g~~iDgiGlQ~H~~-------~---~~~~~~~~~~~l~~~~~~g~pi~i 187 (254)
T smart00633 137 AIYELVKKLKAKGVPIDGIGLQSHLS-------L---GSPNIAEIRAALDRFASLGLEIQI 187 (254)
T ss_pred HHHHHHHHHHHCCCccceeeeeeeec-------C---CCCCHHHHHHHHHHHHHcCCceEE
Confidence 56788888999999998888752211 0 1244 56677777777766554
No 103
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=58.83 E-value=53 Score=29.90 Aligned_cols=108 Identities=7% Similarity=0.057 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccccc-CCcceeeecCCCCC--ChHHHHHHHHHCCCeEEeecC-CccccC-CCcccc
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDIDYM-DGFRCFTFDKERFP--DPKSLAADLHLNGFKAIWMLD-PGIKHE-DGYFVY 75 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~-~~~~~f~~d~~~FP--d~~~~~~~l~~~G~k~~~~~~-P~i~~~-~~~~~~ 75 (307)
++.++++++.+...++..=.+++.+.+. .+...+.-++..+- +++++++..++.|+.++.-++ |.-... -..+.|
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~~~~~ 95 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILKHPEF 95 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHhCccc
Confidence 3678999999999999887777776442 11111111223332 478999999999999997654 321100 000011
Q ss_pred ccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 76 DSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
... .+ ++.....+|.++|++.++.++.++++.+
T Consensus 96 ~~l---------~~--------~~~~~~~l~~~~~~t~~fi~~li~ev~~ 128 (301)
T cd06565 96 RHL---------RE--------VDDPPQTLCPGEPKTYDFIEEMIRQVLE 128 (301)
T ss_pred ccc---------cc--------cCCCCCccCCCChhHHHHHHHHHHHHHH
Confidence 100 00 0112345899999999999999988775
No 104
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=57.80 E-value=1.2e+02 Score=31.14 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHcCCCcceE-EecccccC-CcceeeecCCCCCChHHHHHHHHHCCCeEEeecCC-ccccCCCccccccc
Q 021825 2 ILIREFVRTFREKGIPCDVI-WMDIDYMD-GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSG 78 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i-~lD~~w~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P-~i~~~~~~~~~~~~ 78 (307)
+.+.+.++.|++.++..=.+ .+-+.+.. ..+.|.|. +-|.. +++.++++|+++++-..| ...+ .....
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~---~~D~~-~l~~a~~~Gl~vil~t~P~g~~P-----~Wl~~ 100 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT---WLDEI-FLERAYKAGLYVILRTGPTGAPP-----AWLAK 100 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc---cchHH-HHHHHHhcCceEEEecCCCCCCc-----hHHhc
Confidence 45678889999998877555 54545443 34555554 45666 799999999999987667 2221 12222
Q ss_pred cccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHH----HHhhc--CccEEEecCCCCcc
Q 021825 79 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK----DFIYN--GVDGIWNDMNEPAV 140 (307)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~----~l~~~--Gvdg~w~D~~e~~~ 140 (307)
....++..++++....- +.-..+.+++|-=++.-...++ .++.. .|-+|.+|. |+..
T Consensus 101 ~~PeiL~~~~~~~~~~~----g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~ 163 (673)
T COG1874 101 KYPEILAVDENGRVRSD----GARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGG 163 (673)
T ss_pred CChhheEecCCCcccCC----CcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCC
Confidence 23445555555533221 1122367777732222222222 22333 477888885 5443
No 105
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=56.24 E-value=24 Score=30.63 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=44.2
Q ss_pred HHHHHHHHc--CCCcceEEe--cc-ccc-----CCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCcccc
Q 021825 6 EFVRTFREK--GIPCDVIWM--DI-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 68 (307)
Q Consensus 6 ~~~~~~~~~--~iP~d~i~l--D~-~w~-----~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~ 68 (307)
++++.+|+. ++|+|+-.. ++ .|- .+-...++--|.=+++..+++.+|+.|+|.++.++|....
T Consensus 47 ~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~ 119 (220)
T PRK08883 47 PICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPL 119 (220)
T ss_pred HHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 467788875 799887641 11 111 1223466666655789999999999999999999997544
No 106
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=56.00 E-value=43 Score=26.57 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHH-cCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCC-ccc
Q 021825 2 ILIREFVRTFRE-KGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP-GIK 67 (307)
Q Consensus 2 ~~v~~~~~~~~~-~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P-~i~ 67 (307)
+++.+.++.+++ .++|..-+. ..|+...+.-.|- =|+..+.++.|.++|+|-++.+.| |+.
T Consensus 41 ~~~~~~~~~v~~~l~~~~~~~~--~~fqS~~g~~~Wl---~P~~~~~l~~l~~~G~~~i~v~p~gF~~ 103 (135)
T cd00419 41 DQCEETARLVAERLGLPFDEYE--LAYQSRFGPGEWL---EPSTDDALEELAKEGVKNVVVVPIGFVS 103 (135)
T ss_pred HHHHHHHHHHHHHhCCCCCCEE--EEecCCCCCCCCC---CCCHHHHHHHHHHcCCCeEEEECCcccc
Confidence 456666666653 444443222 3455443322232 278899999999999998888888 444
No 107
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=55.29 E-value=61 Score=21.73 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEE
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAI 59 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~ 59 (307)
.+.++.+.+.++++.++.+..-.. .....+.++. .+++...+.|+++|+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~--~~~~~~rl~~---~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADT--SEFGILRLIV---SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEec--CCCCEEEEEE---CCHHHHHHHHHHCCCEEE
Confidence 567889999999999999886432 1224444432 457899999999999875
No 108
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=55.05 E-value=83 Score=29.09 Aligned_cols=115 Identities=9% Similarity=0.081 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccc--cc---CCcceeeec----------CCCC--CChHHHHHHHHHCCCeEEeecC
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDID--YM---DGFRCFTFD----------KERF--PDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~--w~---~~~~~f~~d----------~~~F--Pd~~~~~~~l~~~G~k~~~~~~ 63 (307)
+++|+++++.+...++..=.++|-++ |- ..+-.++-. ...+ .+++++++..++.|+++|.-++
T Consensus 17 ~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD 96 (329)
T cd06568 17 VAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEID 96 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 36899999999999999988887653 31 111111110 1112 2478999999999999998775
Q ss_pred -CccccC--CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 64 -PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 64 -P~i~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
|.-... ..|+-+... +. ....+. .+.-....+|.++|++.++.++.++++.+
T Consensus 97 ~PGH~~a~~~~~p~l~~~---~~-----~~~~~~--~~~~~~~~l~~~~~~t~~fl~~v~~E~~~ 151 (329)
T cd06568 97 MPGHTNAALAAYPELNCD---GK-----AKPLYT--GIEVGFSSLDVDKPTTYEFVDDVFRELAA 151 (329)
T ss_pred CcHHHHHHHHhChhhccC---CC-----CCcccc--ccCCCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 432210 111111100 00 000000 00001235899999999999999888864
No 109
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=54.63 E-value=24 Score=32.47 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccc--cc---CCccee----eecCC----CC--CChHHHHHHHHHCCCeEEeecC-C
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDID--YM---DGFRCF----TFDKE----RF--PDPKSLAADLHLNGFKAIWMLD-P 64 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~--w~---~~~~~f----~~d~~----~F--Pd~~~~~~~l~~~G~k~~~~~~-P 64 (307)
++.|+++|+.+...++..=.+++.++ |- ..+... ..... .+ -+++++++..++.|+++|.-++ |
T Consensus 17 ~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid~P 96 (351)
T PF00728_consen 17 VDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEIDTP 96 (351)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeeccCc
Confidence 36899999999999999877777655 11 111110 01110 12 2578999999999999997665 4
Q ss_pred ccccC--CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 65 GIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 65 ~i~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
.-... ..++.+... . + ..+........+......+|.++|++.++.++.++++.+
T Consensus 97 GH~~~~l~~~p~~~~~---~-~--~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~ 153 (351)
T PF00728_consen 97 GHAEAWLKAYPELGCS---A-W--PEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVAD 153 (351)
T ss_dssp SS-HHHHHHHHHHCCC---H-T--TCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCchhhcc---c-c--ccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHh
Confidence 32110 011111100 0 0 001111111122223346899999999999999988764
No 110
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=54.31 E-value=31 Score=30.38 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEee
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~ 61 (307)
++++++++-+.+++||+-+.++- .+.+....-+++-...|++.+.++.+.++|-.+++.
T Consensus 16 ~~l~~i~d~l~~~~ipf~v~vIP-~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 16 EKLKEIADYLYKYGIPFSVAVIP-VYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEe-cccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 57889999999999999888876 443322222333334566677777888899887753
No 111
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.20 E-value=96 Score=28.96 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccc--cc---CC------cceeee-----------c----CCCC--CChHHHHHHHH
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDID--YM---DG------FRCFTF-----------D----KERF--PDPKSLAADLH 52 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~--w~---~~------~~~f~~-----------d----~~~F--Pd~~~~~~~l~ 52 (307)
+++|+++|+.+...++..=.++|-++ |- .. .+.+.- + ...+ .+++++++..+
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 36899999999999999877777543 21 11 111111 0 0112 24789999999
Q ss_pred HCCCeEEeecC-CccccC--CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 53 LNGFKAIWMLD-PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 53 ~~G~k~~~~~~-P~i~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
+.|+++|.-++ |.-... ..|+-+. .......+.. ........+|.++|++.++.++.++++.+
T Consensus 97 ~rgI~VIPEID~PGH~~a~l~~~pel~--------~~~~~~~~~~--~~~~~~~~L~~~~~~t~~f~~~ll~E~~~ 162 (357)
T cd06563 97 ERGITVIPEIDMPGHALAALAAYPELG--------CTGGPGSVVS--VQGVVSNVLCPGKPETYTFLEDVLDEVAE 162 (357)
T ss_pred HcCCEEEEecCCchhHHHHHHhCcccc--------CCCCCCcccc--ccCcCCCccCCCChhHHHHHHHHHHHHHH
Confidence 99999997765 432110 0111111 0000000000 00112346899999999999999888764
No 112
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=53.12 E-value=53 Score=28.80 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.0
Q ss_pred hHHHHHHHHHCCCeEEeecC
Q 021825 44 PKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 44 ~~~~~~~l~~~G~k~~~~~~ 63 (307)
.++.+..||++|.|+++.+.
T Consensus 53 ~~~~i~~l~~kG~KVl~sig 72 (255)
T cd06542 53 KETYIRPLQAKGTKVLLSIL 72 (255)
T ss_pred HHHHHHHHhhCCCEEEEEEC
Confidence 47899999999999998654
No 113
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=53.08 E-value=86 Score=29.19 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHcCCCcceEEeccc--cc---CCcceee----ecCC-CC--CChHHHHHHHHHCCCeEEeecC-Cccc
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDID--YM---DGFRCFT----FDKE-RF--PDPKSLAADLHLNGFKAIWMLD-PGIK 67 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~--w~---~~~~~f~----~d~~-~F--Pd~~~~~~~l~~~G~k~~~~~~-P~i~ 67 (307)
+++|+++++.+...++..=.++|.++ |- ..+...+ +.+. .| .+++++++..++.|+.++.-++ |.-.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~ 96 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPGHT 96 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCchhh
Confidence 36899999999999999988887643 21 1111111 1111 12 2578999999999999998775 5322
Q ss_pred cC--CCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh
Q 021825 68 HE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 125 (307)
Q Consensus 68 ~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~ 125 (307)
.. ..++- +.+...+. ....+-......+|.++|++.++.++.++++.+
T Consensus 97 ~a~~~~~p~--------l~~~~~~~--~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~ 146 (348)
T cd06562 97 GSWGQGYPE--------LLTGCYAV--WRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSE 146 (348)
T ss_pred HHHHHhChh--------hhCCCCcc--ccccccCCCCccccCCChhHHHHHHHHHHHHHH
Confidence 11 11110 00000000 000000012345899999999999999988765
No 114
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=52.77 E-value=30 Score=30.13 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=43.6
Q ss_pred HHHHHHHHc--CCCcceEEe--cc-ccc-----CCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCcccc
Q 021825 6 EFVRTFREK--GIPCDVIWM--DI-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 68 (307)
Q Consensus 6 ~~~~~~~~~--~iP~d~i~l--D~-~w~-----~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~ 68 (307)
++++.+|+. ++|+|+-.. ++ .|. .+-...++--|.=+++..+++.+|+.|+|.++.++|....
T Consensus 51 ~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~ 123 (223)
T PRK08745 51 MVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPV 123 (223)
T ss_pred HHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCH
Confidence 467778875 799887541 11 111 1223355555555789999999999999999999997654
No 115
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=50.46 E-value=80 Score=28.59 Aligned_cols=57 Identities=9% Similarity=0.170 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHcCCCcceEEecccccCCcc-e-eeec-CCCCCChHHHHHHHHHCCCeEEee
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDIDYMDGFR-C-FTFD-KERFPDPKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~-~-f~~d-~~~FPd~~~~~~~l~~~G~k~~~~ 61 (307)
.++|+++++.|.+. --+|++.+-++..- . =-+| ...|....+-+.++|+.|+|++..
T Consensus 128 pd~VldlL~e~~~r----~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~H 187 (312)
T COG1242 128 PDDVLDLLAEYNKR----YEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTH 187 (312)
T ss_pred cHHHHHHHHHHhhh----eEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEE
Confidence 36899999999888 34688877765321 1 0111 234556788999999999998753
No 116
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.38 E-value=64 Score=21.10 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeE
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKA 58 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~ 58 (307)
.+.++++.+.++++.+..+..-..=..+.....+.-+. ++...+.|+++|+++
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~---~~~~~~~L~~~G~~v 64 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED---IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC---HHHHHHHHHHCCceE
Confidence 46788899999999998776421100233334433322 889999999999875
No 117
>PHA02119 hypothetical protein
Probab=50.27 E-value=9.7 Score=26.44 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=34.1
Q ss_pred HHHHHcCCCcceEEecccccCCcceeeecCCCCCC--hHHHHHHHHHCCCe
Q 021825 9 RTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD--PKSLAADLHLNGFK 57 (307)
Q Consensus 9 ~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd--~~~~~~~l~~~G~k 57 (307)
++++.+=.|+.-++-|---....-..+|+-.+||. ++++++.|++.|+.
T Consensus 19 eelkrklapvgkfvademi~~r~f~isf~~~kfp~i~~~divdylr~lgy~ 69 (87)
T PHA02119 19 EELKRKLAPVGKFVADEMIRQRSFKISFDVAKFPAIMPKDIVDYLRSLGYD 69 (87)
T ss_pred HHHHHhccchhhHHHHHHHHhheeEEEeccccCCccccHHHHHHHHHccch
Confidence 34455557888887663322222235688899998 69999999999974
No 118
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=49.67 E-value=29 Score=30.34 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHcCCCcceEEeccccc----------CCcceeeecC------------CCCCChHHHHHHHHHCCCeEE
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYM----------DGFRCFTFDK------------ERFPDPKSLAADLHLNGFKAI 59 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~----------~~~~~f~~d~------------~~FPd~~~~~~~l~~~G~k~~ 59 (307)
++++.+++.....+=..+++++|.|=. ..++.-.+|+ ...|...++++.|+++|++++
T Consensus 61 ~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf 140 (229)
T TIGR01675 61 DEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIF 140 (229)
T ss_pred HHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEE
Confidence 456666777666666778999997732 1122211222 233455789999999999987
Q ss_pred eec
Q 021825 60 WML 62 (307)
Q Consensus 60 ~~~ 62 (307)
+..
T Consensus 141 ~lT 143 (229)
T TIGR01675 141 LLS 143 (229)
T ss_pred EEc
Confidence 754
No 119
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=47.82 E-value=2.3e+02 Score=26.07 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCCcceEEec--ccccCCcceeee-----------cCCCCCChHHHHHHHHHCCCeEEeecCCccccCC
Q 021825 4 IREFVRTFREKGIPCDVIWMD--IDYMDGFRCFTF-----------DKERFPDPKSLAADLHLNGFKAIWMLDPGIKHED 70 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD--~~w~~~~~~f~~-----------d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~ 70 (307)
+-+..+.+++.+|.. +++| +++ |..++ .-..|-|++-++++++++|+-++.=+.-+ .++
T Consensus 79 ~de~fk~ikdn~~Na--~ViD~Kdd~----G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvF--KD~ 150 (400)
T COG1306 79 LDELFKLIKDNNINA--FVIDVKDDY----GELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVF--KDT 150 (400)
T ss_pred HHHHHHHHHhCCCCE--EEEEecCCC----ccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEe--eee
Confidence 335556666777765 6665 333 32222 12458999999999999998665322211 111
Q ss_pred CccccccccccceeEEcCCCCceeeeecC------CCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecCCC
Q 021825 71 GYFVYDSGSKIDVWIQKADGTPFIGEVWP------GPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 137 (307)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~~~~~w~------g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~~e 137 (307)
-++.++ +-+. -|. .+|+|..+-.-+ -.-+++|-.+|++-++=-...|+..+-|||=+-+|.-.
T Consensus 151 ~l~~~n-~fk~--av~-~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYIR 219 (400)
T COG1306 151 ILAKEN-PFKI--AVY-KDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYIR 219 (400)
T ss_pred eEEeec-CceE--EEE-cCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHcCccceeeeEEE
Confidence 111011 0010 111 123332211111 12356899999988776666677888999999888643
No 120
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=47.75 E-value=40 Score=30.91 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCcceEEe-cccccCCcceeeecCCCCCC-----hHHHHHHHHHCCCeEEeecCCccccCCCccccc
Q 021825 3 LIREFVRTFREKGIPCDVIWM-DIDYMDGFRCFTFDKERFPD-----PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 76 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~l-D~~w~~~~~~f~~d~~~FPd-----~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~ 76 (307)
+=+++++-+.+.++..=..-- |+.|.. -.| ++.+|. ++++++.-++.|++++.-++|+....
T Consensus 16 ~R~~l~~f~~~~kmN~YiYAPKdDpyhr----~~W-re~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~------- 83 (306)
T PF07555_consen 16 DRLDLIRFLGRYKMNTYIYAPKDDPYHR----SKW-REPYPEEELAELKELADAAKANGVDFVYAISPGLDIC------- 83 (306)
T ss_dssp HHHHHHHHHHHTT--EEEE--TT-TTTT----TTT-TS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT---------
T ss_pred HHHHHHHHHHHcCCceEEECCCCChHHH----hhh-cccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccc-------
Confidence 345667777777766422211 122211 123 456665 78999999999999999999975532
Q ss_pred cccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhcCccEEEecC
Q 021825 77 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDM 135 (307)
Q Consensus 77 ~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~Gvdg~w~D~ 135 (307)
|+.++..+=...+++++.+.||+.|-+-+
T Consensus 84 ------------------------------~s~~~d~~~L~~K~~ql~~lGvr~Failf 112 (306)
T PF07555_consen 84 ------------------------------YSSEEDFEALKAKFDQLYDLGVRSFAILF 112 (306)
T ss_dssp ------------------------------TSHHHHHHHHHHHHHHHHCTT--EEEEE-
T ss_pred ------------------------------cCcHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 22344455566778888899999876643
No 121
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=47.08 E-value=38 Score=26.98 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCCc-ceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEee
Q 021825 3 LIREFVRTFREKGIPC-DVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~-d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~ 61 (307)
+-.+-+...++.|+|- ..|++|.++ ...+-+++..--|=++...+.|+..|+++.+.
T Consensus 78 dA~~A~~~A~~lG~p~gt~IYfavD~--d~~~~~~~~~i~~Y~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 78 DARDAVAAARALGFPAGTPIYFAVDY--DATDAECDSAILPYFRGWNSALGASGYRPGVY 135 (136)
T ss_dssp HHHHHHHHHHHTT--SS-EEEEE--T--S-B-HH-------HHHHHHHHHGGGT-EEEEE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeec--CCCchhhhhHHHHHHHHHHHHHhhCCCcceee
Confidence 4567788889999999 677888774 23444555555566799999999999988763
No 122
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=46.81 E-value=25 Score=32.90 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC-hHHHHHHHHHCCCeEEe
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIW 60 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~ 60 (307)
+++|.+++.+++++++|+.+|++.+ -+..-|| ...-|+ ++++-+.++..|+.+++
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEP-IQsEGGD----nhaSp~Ff~kLrdi~~Kh~v~fiv 310 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEP-IQSEGGD----NHASPDFFRKLRDITKKHGVAFIV 310 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeec-hhccCCC----ccCCHHHHHHHHHHHHhcCeEEEe
Confidence 4789999999999999999999883 2222222 334445 36777777888877665
No 123
>PLN02635 disproportionating enzyme
Probab=45.63 E-value=36 Score=33.82 Aligned_cols=76 Identities=14% Similarity=0.325 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCeEEeecCCccccCCCccccccccccceeEEcCCCCcee------------eeecCCCccCCCCCChHH
Q 021825 45 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFI------------GEVWPGPCVFPDYTQSKV 112 (307)
Q Consensus 45 ~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~w~g~~~~~Dftnp~a 112 (307)
+++-+..++.|++++.-+.=+|..++. .+. ...++|..+.+|.|.. |..|+....-++--..+.
T Consensus 227 ~~l~~yA~~~Gi~L~gDlpi~Va~dSa-DvW---a~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~y~w~~l~~~g 302 (538)
T PLN02635 227 QAVRSYANEKGISIIGDMPIYVGGHSA-DVW---ANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMAKDG 302 (538)
T ss_pred HHHHHHHHHCCCEEEEEeecccCCCcH-HHh---cCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcCcCHHHHHhcC
Confidence 455666788999876555445665442 122 3444555554443321 334433221111111223
Q ss_pred HHHHHHHHHHHh
Q 021825 113 RSWWGSLVKDFI 124 (307)
Q Consensus 113 ~~ww~~~l~~l~ 124 (307)
-.||.++++...
T Consensus 303 y~ww~~Rlr~~~ 314 (538)
T PLN02635 303 YSWWAGRMRRAL 314 (538)
T ss_pred cHHHHHHHHHHH
Confidence 468999998654
No 124
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=45.27 E-value=1.2e+02 Score=28.45 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=29.3
Q ss_pred cceEEeccc-ccCCcceeeecCCCCC--ChHHHHHHHHHCCCeEEeecCCccc
Q 021825 18 CDVIWMDID-YMDGFRCFTFDKERFP--DPKSLAADLHLNGFKAIWMLDPGIK 67 (307)
Q Consensus 18 ~d~i~lD~~-w~~~~~~f~~d~~~FP--d~~~~~~~l~~~G~k~~~~~~P~i~ 67 (307)
.|+|++--. +.. +.+. ..|+ ++++.++.+|+.|.|+.+.++..+.
T Consensus 27 ADaVY~G~~~~~~--R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~ 74 (347)
T COG0826 27 ADAVYIGEKEFGL--RRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLLH 74 (347)
T ss_pred CCEEEeCCccccc--cccc---ccCCHHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 888887633 211 1111 1233 4899999999999999877665443
No 125
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=44.23 E-value=50 Score=28.91 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=43.2
Q ss_pred HHHHHHHHc-CCCcceEE--ecc-ccc-----CCcceeeecCCC-CCChHHHHHHHHHCCCeEEeecCCcccc
Q 021825 6 EFVRTFREK-GIPCDVIW--MDI-DYM-----DGFRCFTFDKER-FPDPKSLAADLHLNGFKAIWMLDPGIKH 68 (307)
Q Consensus 6 ~~~~~~~~~-~iP~d~i~--lD~-~w~-----~~~~~f~~d~~~-FPd~~~~~~~l~~~G~k~~~~~~P~i~~ 68 (307)
++++.+|+. ++|+|+-. .++ .|. .+-...++.-|. ..++..+++.+|+.|+|.++.++|....
T Consensus 49 ~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~ 121 (229)
T PRK09722 49 FFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPV 121 (229)
T ss_pred HHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 456667664 68888754 221 121 122336777674 4689999999999999999999997554
No 126
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=44.01 E-value=58 Score=34.08 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC------Cc--ce-eeecCCCCCC---hHHHHHHHHHCCCeEEeecCC
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD------GF--RC-FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~------~~--~~-f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P 64 (307)
+.+.+.++.+++.|| +.||+.+-+.. ++ .+ +..|+ .|.. ++.+++.+|++|+++++-+.|
T Consensus 16 ~~~~~~L~YL~~LGv--~~V~lsPi~~a~~gs~hGYdv~D~~~idp-~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 16 DDAAALLPYLKSLGV--SHLYLSPILTAVPGSTHGYDVVDHSEINP-ELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHhhHHHHHcCC--CEEEeCcCccCCCCCCCCCCCCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456777777776665 78998875542 11 12 34443 4443 789999999999999987765
No 127
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=43.37 E-value=43 Score=29.14 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=29.3
Q ss_pred cceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 18 CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 18 ~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
++.+.+|. | +..--...-||...++++.|+++|+++.+..+
T Consensus 8 ~~~~~~D~-d----G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN 48 (242)
T TIGR01459 8 YDVFLLDL-W----GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSN 48 (242)
T ss_pred CCEEEEec-c----cccccCCccCccHHHHHHHHHHCCCEEEEEeC
Confidence 55677773 2 22222245699999999999999999987555
No 128
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.32 E-value=51 Score=22.14 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCcceEEeccccc--CCcceeeecCCCCCChHHHHHHHHHCCCeE
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYM--DGFRCFTFDKERFPDPKSLAADLHLNGFKA 58 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~--~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~ 58 (307)
.+.++++.+.++++.+..+.....-. .+...+.++-. .+.+.+.+.|+++|+++
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ--EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH--HHHHHHHHHHHHcCCcC
Confidence 56789999999999998887554321 22234555422 26789999999999864
No 129
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=43.08 E-value=40 Score=29.59 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.8
Q ss_pred HHHHHhhcCccEEEecCCC
Q 021825 119 LVKDFIYNGVDGIWNDMNE 137 (307)
Q Consensus 119 ~l~~l~~~Gvdg~w~D~~e 137 (307)
.++.+.+.||||+..|.-+
T Consensus 222 ~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 222 RARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHcCCCEEEeCChH
Confidence 4567778999999999643
No 130
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=43.07 E-value=77 Score=25.94 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC-hHHHHHHHHHCCCeEEeec
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~ 62 (307)
..+.++-+.+.+||+++-++. .+|=|+ +.++++..+++|+++++-.
T Consensus 18 mk~Aa~~L~~fgi~ye~~VvS-------------AHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 18 MKKAAEILEEFGVPYEVRVVS-------------AHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred HHHHHHHHHHcCCCeEEEEEe-------------ccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 455667777889999998866 567777 5788999999999998753
No 131
>PRK08005 epimerase; Validated
Probab=42.87 E-value=54 Score=28.27 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=40.4
Q ss_pred HHHHHHHH-cCCCcceEE--ecc-ccc-----CCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCcccc
Q 021825 6 EFVRTFRE-KGIPCDVIW--MDI-DYM-----DGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKH 68 (307)
Q Consensus 6 ~~~~~~~~-~~iP~d~i~--lD~-~w~-----~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~ 68 (307)
++++.+|+ .++|+|+-. .++ .|. .+-...++.-|.=+++..+++.+|+.|.|+++.++|....
T Consensus 48 ~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~ 119 (210)
T PRK08005 48 KTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPL 119 (210)
T ss_pred HHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCH
Confidence 34555655 357777653 111 111 1222355555544788999999999999999999997544
No 132
>PF11308 GHL1-3: Glycosyl hydrolases related to GH101 family, GHL1-GHL3; InterPro: IPR021459 Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed. Currently no function is known.
Probab=42.73 E-value=74 Score=29.20 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=34.3
Q ss_pred ccceeEEcCCCCceeeeecCCCc-c--CCCCCChHHHHHHHHHHHHHhh-cCccEEEecC
Q 021825 80 KIDVWIQKADGTPFIGEVWPGPC-V--FPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 135 (307)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~w~g~~-~--~~Dftnp~a~~ww~~~l~~l~~-~Gvdg~w~D~ 135 (307)
..+.-|..+||++..+-.|++.. . .+-+..| ..++.++++.+ .|++++-+|.
T Consensus 72 ~~~~~v~~~dGt~~~gf~w~~g~~~~~~p~~~~~----~v~~r~~~i~~~~~~ns~FlDv 127 (307)
T PF11308_consen 72 YEDAAVRNADGTKKEGFRWGGGRYLNVCPTCALP----YVKRRVEEILKGIGFNSWFLDV 127 (307)
T ss_pred cccceeecCCCCCccceecCCcceeccCcccccH----HHHHHHHHHHHhCCCCeEEEec
Confidence 34456778899888776675532 2 2444444 45557777665 7899999985
No 133
>PRK15447 putative protease; Provisional
Probab=42.58 E-value=45 Score=30.37 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCcc
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGI 66 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i 66 (307)
.++++...+.+.+ .|+|++...-.+.+..|+. .++++.++.+|+.|.|+.+.+ |.|
T Consensus 16 ~~~~~~~~~~~~g--aDaVY~g~~~~~~R~~f~~-----~~l~e~v~~~~~~gkkvyva~-p~i 71 (301)
T PRK15447 16 TVRDFYQRAADSP--VDIVYLGETVCSKRRELKV-----GDWLELAERLAAAGKEVVLST-LAL 71 (301)
T ss_pred CHHHHHHHHHcCC--CCEEEECCccCCCccCCCH-----HHHHHHHHHHHHcCCEEEEEe-ccc
Confidence 3455666665555 9999998555444433322 468999999999999987744 443
No 134
>PRK13663 hypothetical protein; Provisional
Probab=41.62 E-value=1.6e+02 Score=28.35 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEee
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~ 61 (307)
++|+.+++.||+.|+=+.+++|- .|.+ =|....+.++|..+|+|+-..
T Consensus 92 ~dVLRLiD~fr~~gl~V~sVVIT-qy~~-----------qp~a~~F~~rLe~~GIkvy~H 139 (493)
T PRK13663 92 QDVLRLIDDFRELGLYVGSVVIT-QYDG-----------QPAADAFRNRLERLGIKVYRH 139 (493)
T ss_pred HHHHHHHHHHHhcCceeeeEEEE-ecCC-----------ChHHHHHHHHHHHCCCceEEe
Confidence 68999999999999999999986 3311 134578999999999998753
No 135
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=41.22 E-value=1.1e+02 Score=27.99 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=36.0
Q ss_pred hHHHHHHHHHCCCeEEeecCCccccCCCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHH
Q 021825 44 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 123 (307)
Q Consensus 44 ~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l 123 (307)
+++.++.+|++|+|+++.+- .... . ..+..++.++-+-+.+.++
T Consensus 62 ~~~~i~~~q~~G~KVllSiG----G~~~-----------------------------~---~~~~~~~~~~~fa~sl~~~ 105 (312)
T cd02871 62 FKADIKALQAKGKKVLISIG----GANG-----------------------------H---VDLNHTAQEDNFVDSIVAI 105 (312)
T ss_pred HHHHHHHHHHCCCEEEEEEe----CCCC-----------------------------c---cccCCHHHHHHHHHHHHHH
Confidence 56778889999999998753 1110 0 0123455555444555554
Q ss_pred -hhcCccEEEecCC
Q 021825 124 -IYNGVDGIWNDMN 136 (307)
Q Consensus 124 -~~~Gvdg~w~D~~ 136 (307)
.+.|+||+=+|.=
T Consensus 106 ~~~~g~DGiDiD~E 119 (312)
T cd02871 106 IKEYGFDGLDIDLE 119 (312)
T ss_pred HHHhCCCeEEEecc
Confidence 4689999999874
No 136
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=41.01 E-value=1.4e+02 Score=28.95 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCccccccccccc
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKID 82 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~ 82 (307)
.+.+.++...+.||.. ++++-=-....-.+-.+....|+.+++.+..+.-|+|+-+.++ ..|+ .+- +
T Consensus 184 R~kDYAR~laSiGINg--~v~NNVNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin----faSP--~~l-----G 250 (684)
T COG3661 184 RMKDYARALASIGING--TVLNNVNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN----FASP--MEL-----G 250 (684)
T ss_pred HHHHHHHHHhhcCcce--EEecccccchhhhheechHhHHHHHHHHHHhhhccceEEEEec----cCCc--ccc-----C
Confidence 3445555555555443 3332111111122335555567778888888888888777644 1111 110 0
Q ss_pred eeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhhc--CccEE--Eec
Q 021825 83 VWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN--GVDGI--WND 134 (307)
Q Consensus 83 ~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~~--Gvdg~--w~D 134 (307)
- +++ -|--.+++++||++....+++. .+-|| |.|
T Consensus 251 g-L~T-----------------ADPLDe~VrawWkeka~~IY~yIPDFGGFLVKAd 288 (684)
T COG3661 251 G-LKT-----------------ADPLDEAVRAWWKEKADEIYKYIPDFGGFLVKAD 288 (684)
T ss_pred C-cCc-----------------CCcccHHHHHHHHHHHHHHHHhcccccceEEecc
Confidence 0 001 2444599999999999888753 45565 455
No 137
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=40.90 E-value=1.1e+02 Score=22.25 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHC
Q 021825 7 FVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN 54 (307)
Q Consensus 7 ~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~ 54 (307)
.-+..+++++|...+-....+-...-.|-+..+.-+|+.++++.|+..
T Consensus 31 c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~ 78 (88)
T PF04468_consen 31 CRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLARE 78 (88)
T ss_pred HHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 334566678877655444333233345777788899999999999876
No 138
>PRK15063 isocitrate lyase; Provisional
Probab=40.86 E-value=50 Score=31.69 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=26.3
Q ss_pred ceeeecCCCCCC--hHHHHHHHHHCCCeEEeecCCcc
Q 021825 32 RCFTFDKERFPD--PKSLAADLHLNGFKAIWMLDPGI 66 (307)
Q Consensus 32 ~~f~~d~~~FPd--~~~~~~~l~~~G~k~~~~~~P~i 66 (307)
..|+|... |.| ++.++++|.++|+++.++....+
T Consensus 315 PsfnW~~~-~~~~~~~~f~~eL~~~Gy~~~~~~la~~ 350 (428)
T PRK15063 315 PSFNWKKN-LDDATIAKFQRELGAMGYKFQFITLAGF 350 (428)
T ss_pred CCcccccc-cCHHHHHHHHHHHHHcCceEEEechHHH
Confidence 35888775 766 68899999999999988754433
No 139
>PLN02645 phosphoglycolate phosphatase
Probab=40.56 E-value=86 Score=28.56 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=31.2
Q ss_pred CcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 17 PCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 17 P~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
.+++|.+|.+ |.+--+.+-||...+.++.|+++|+++++..+
T Consensus 27 ~~~~~~~D~D-----Gtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN 68 (311)
T PLN02645 27 SVETFIFDCD-----GVIWKGDKLIEGVPETLDMLRSMGKKLVFVTN 68 (311)
T ss_pred hCCEEEEeCc-----CCeEeCCccCcCHHHHHHHHHHCCCEEEEEeC
Confidence 3678888832 33322345789999999999999999987665
No 140
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=40.55 E-value=1.4e+02 Score=22.69 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHC-CCeEEeec
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFKAIWML 62 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~-G~k~~~~~ 62 (307)
.+...++.+.+.++ |+|++-.=-..+. ....=|..+.+.+.|+++ |++++...
T Consensus 53 ~~~~~~~~l~~~~~--d~IHlssC~~~~~-----~~~~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 53 KLVRRIKKLKKNGA--DVIHLSSCMVKGN-----PHGPCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred HHHHHHHHHHHCCC--CEEEEcCCEecCC-----CCCCCCCHHHHHHHHHHHhCCCEeeec
Confidence 56778888887764 5888762221110 112668899999999999 99988653
No 141
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=40.18 E-value=32 Score=33.83 Aligned_cols=74 Identities=20% Similarity=0.393 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCeEEeecCCccccCCCccccccccccceeEEcCCCCce------------eeeecCCCccCCCCCC--h
Q 021825 45 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPF------------IGEVWPGPCVFPDYTQ--S 110 (307)
Q Consensus 45 ~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~w~g~~~~~Dftn--p 110 (307)
+++.+..+++|++++.-+.-+|..++. .+. ...++|..+.+|+|. .|..|+... .|+.. .
T Consensus 201 ~~~~~yA~~~Gi~L~gDLpigV~~dsa-DvW---a~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~--y~w~~l~~ 274 (497)
T PRK14508 201 KALKAYANDKGIEIIGDLPIYVAYDSA-DVW---ANPELFKLDEDGKPTVVAGVPPDYFSETGQLWGNPV--YNWDALRK 274 (497)
T ss_pred HHHHHHHHHCCCEEEEeeecccCCCCH-HHH---cChhhhcCCCCCCcceeeeCCCCCCCcccCcCCCCC--cCHHHHHh
Confidence 455666788999876655556666542 121 344455555444332 134443322 12211 1
Q ss_pred HHHHHHHHHHHHHh
Q 021825 111 KVRSWWGSLVKDFI 124 (307)
Q Consensus 111 ~a~~ww~~~l~~l~ 124 (307)
+..+||+++++...
T Consensus 275 ~gy~ww~~rlr~~~ 288 (497)
T PRK14508 275 DGYRWWIERLRRSF 288 (497)
T ss_pred cCcHHHHHHHHHHH
Confidence 23579999998654
No 142
>PLN03059 beta-galactosidase; Provisional
Probab=39.24 E-value=66 Score=33.67 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCcceEEecccccC-CcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccC
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMD-GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 69 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~ 69 (307)
=++.++++|+.|+..=..++-+.+.. ..+.|+|.. .-|+.++++..++.|+.+++=.-|+|..+
T Consensus 61 W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G--~~DL~~Fl~la~e~GLyvilRpGPYIcAE 125 (840)
T PLN03059 61 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFED--RYDLVKFIKVVQAAGLYVHLRIGPYICAE 125 (840)
T ss_pred HHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccc--hHHHHHHHHHHHHcCCEEEecCCcceeee
Confidence 35778888888776655554444433 356687754 45899999999999999999889999764
No 143
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=39.07 E-value=47 Score=30.47 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.6
Q ss_pred hHHHHHHHHHCCCeEEee
Q 021825 44 PKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 44 ~~~~~~~l~~~G~k~~~~ 61 (307)
+..+++++|+.|.+|.+|
T Consensus 253 ~~~f~~~~~~~g~~V~~~ 270 (309)
T cd08613 253 PNRFLARMEAAGTRVILV 270 (309)
T ss_pred CHHHHHHHHHcCCeEEEE
Confidence 578899999999998886
No 144
>PRK06769 hypothetical protein; Validated
Probab=38.59 E-value=36 Score=28.07 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=29.2
Q ss_pred CcceEEeccccc-CCcceeee--cCCCCCChHHHHHHHHHCCCeEEeec
Q 021825 17 PCDVIWMDIDYM-DGFRCFTF--DKERFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 17 P~d~i~lD~~w~-~~~~~f~~--d~~~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
|+-++.+|-+=. .++..+.. +-+.||+.+++++.||++|+++.+..
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~T 51 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFT 51 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEE
Confidence 455677773321 12211111 23458999999999999999987653
No 145
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=38.33 E-value=48 Score=29.46 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=13.8
Q ss_pred HHHHHhhcCccEEEecC
Q 021825 119 LVKDFIYNGVDGIWNDM 135 (307)
Q Consensus 119 ~l~~l~~~Gvdg~w~D~ 135 (307)
.++++.++||||+..|.
T Consensus 244 ~~~~l~~~GVdgIiTD~ 260 (264)
T cd08575 244 DFEEAFDLGADGVMTDS 260 (264)
T ss_pred HHHHHHhcCCCEEEeCC
Confidence 45677789999999985
No 146
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.15 E-value=53 Score=24.48 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.5
Q ss_pred cCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 37 DKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 37 d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
..+-+|...++++.|+++|.++.+..+
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTN 38 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTN 38 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeC
Confidence 456789999999999999998876533
No 147
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.50 E-value=85 Score=20.68 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCcceEEeccccc---CCc--ceeeecCCCCCChHHHHHHHHHCCCeEE
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYM---DGF--RCFTFDKERFPDPKSLAADLHLNGFKAI 59 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~---~~~--~~f~~d~~~FPd~~~~~~~l~~~G~k~~ 59 (307)
.+.++++.+.+.++-+..+....... .+. -.++++-..=.+++++++.|++.|+++.
T Consensus 11 ~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 11 QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 46788888999999998776543321 122 2244543222345699999999998764
No 148
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=37.12 E-value=25 Score=30.86 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCcceEEecc-cccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDI-DYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~-~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P 64 (307)
.+.+.++.+++.|+..==|.+.. .+......+..+.+.+..++++++.+++.|+++++-++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 35678888888887664444442 222122223455556667899999999999999876553
No 149
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=36.84 E-value=25 Score=34.73 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHCCCeEEeecCCccccCCCccccccccccceeEEcCC-CCc------ee-----eeecCCCccCCCCC--ChHH
Q 021825 47 LAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKAD-GTP------FI-----GEVWPGPCVFPDYT--QSKV 112 (307)
Q Consensus 47 ~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~-g~~------~~-----~~~w~g~~~~~Dft--np~a 112 (307)
+-+..+++|++++.-+.-+|..++. .+. ...++|..+.+ |.| .. |..|+... .|+. ..+.
T Consensus 217 l~~yA~~~~I~L~gDlpi~v~~dsa-DvW---a~~~~F~l~~~~GaP~~agvpPd~Fs~~GQ~WG~P~--y~w~~l~~~g 290 (513)
T TIGR00217 217 LKRYANDMGIGLYGDLPVFVAYDSA-DVW---ADPELFCLRASAGAPKPAGLGPDYFLEQGQNWGLPP--YDWNVLKARG 290 (513)
T ss_pred HHHHHhcCCcEEEEeCcceeCCCcH-HHH---hCHHHhCCCcccCCCCCCCCCCCcccccCCCCCCCC--cCHHHHHhcC
Confidence 3344556777776655556666542 121 23344444433 444 22 45564433 2222 1223
Q ss_pred HHHHHHHHHHHh
Q 021825 113 RSWWGSLVKDFI 124 (307)
Q Consensus 113 ~~ww~~~l~~l~ 124 (307)
..||.++++..+
T Consensus 291 y~ww~~rlr~~~ 302 (513)
T TIGR00217 291 YEWWIKRLGANM 302 (513)
T ss_pred cHHHHHHHHHHH
Confidence 479999998654
No 150
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=36.76 E-value=64 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=30.8
Q ss_pred CCcceEEecccccCCcceeeecC-CCCCChHHHHHHHHHCCCeEEeecC
Q 021825 16 IPCDVIWMDIDYMDGFRCFTFDK-ERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 16 iP~d~i~lD~~w~~~~~~f~~d~-~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
..+..+++|.+-. -...+. ..||+..++++.|+++|+++++..+
T Consensus 23 ~~v~~vv~D~Dgt----l~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 23 VGIKGVVLDKDNT----LVYPDHNEAYPALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred CCCCEEEEecCCc----cccCCCCCcChhHHHHHHHHHHcCCEEEEEeC
Confidence 4667788885432 111122 5699999999999999999876544
No 151
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=36.34 E-value=1e+02 Score=27.35 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHc--CCCcceEE-ecccccC------------CcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCcc
Q 021825 2 ILIREFVRTFREK--GIPCDVIW-MDIDYMD------------GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGI 66 (307)
Q Consensus 2 ~~v~~~~~~~~~~--~iP~d~i~-lD~~w~~------------~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i 66 (307)
+++.++++.+|+. ++|++.+. .++=+.. +.....+--.-+.+..++++.+++.|++.++.++|..
T Consensus 72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5788999999975 78987443 1110110 1111112112223467899999999999998888865
Q ss_pred c
Q 021825 67 K 67 (307)
Q Consensus 67 ~ 67 (307)
.
T Consensus 152 ~ 152 (256)
T TIGR00262 152 D 152 (256)
T ss_pred C
Confidence 4
No 152
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=36.29 E-value=67 Score=28.86 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=30.8
Q ss_pred cceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 18 CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 18 ~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
.+++.+|. +|..--..+.||.-.+.++.|+++|+++++..+
T Consensus 8 y~~~l~Dl-----DGvl~~G~~~ipga~e~l~~L~~~g~~~iflTN 48 (269)
T COG0647 8 YDGFLFDL-----DGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTN 48 (269)
T ss_pred cCEEEEcC-----cCceEeCCccCchHHHHHHHHHHcCCeEEEEeC
Confidence 35566661 233334578899999999999999999988765
No 153
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=36.28 E-value=40 Score=28.84 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=28.2
Q ss_pred eeecCCCCCChHHHHHHHHHCCCeEEeecCCccccC
Q 021825 34 FTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHE 69 (307)
Q Consensus 34 f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~ 69 (307)
.++-.|..+++.++++.+|+.|+|+++.++|....+
T Consensus 84 i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~ 119 (201)
T PF00834_consen 84 ITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVE 119 (201)
T ss_dssp EEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GG
T ss_pred EEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCch
Confidence 445556678999999999999999999999976553
No 154
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=35.93 E-value=1.6e+02 Score=26.57 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred CCCChHHHHHHHHHCCCeEEeecC
Q 021825 40 RFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 40 ~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
..|.+.+-|+.++++|+|+++.+-
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEEcc
Confidence 457889999999999999999754
No 155
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=35.75 E-value=96 Score=25.28 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=13.0
Q ss_pred HHHHHhhcCccEEEecC
Q 021825 119 LVKDFIYNGVDGIWNDM 135 (307)
Q Consensus 119 ~l~~l~~~Gvdg~w~D~ 135 (307)
.++.+.+.||||+-.|.
T Consensus 173 ~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 173 DARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHCCCCEEecCC
Confidence 55666778999998873
No 156
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=35.23 E-value=38 Score=32.20 Aligned_cols=82 Identities=15% Similarity=0.288 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCcceEEeccccc--CC--cceeeecCCCCCChHHHHHHHHHCCCeEEeec--CCc---cccC----
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYM--DG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWML--DPG---IKHE---- 69 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~--~~--~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~--~P~---i~~~---- 69 (307)
.+..-++.+++ +.+|.|.+|.-|. .. -+.|+|. --+++++-+++.|+|+...+ +-. |..+
T Consensus 17 ~~~~~L~~LK~--~GV~GVmvdvWWGiVE~~~p~~ydWs-----~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 17 ALEAQLRALKS--AGVDGVMVDVWWGIVEGEGPQQYDWS-----GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp HHHHHHHHHHH--TTEEEEEEEEEHHHHTGSSTTB---H-----HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHH--cCCcEEEEEeEeeeeccCCCCccCcH-----HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 34555566655 4589999998773 22 2334443 46899999999999986543 311 1110
Q ss_pred CCccccccccccceeEEcCCCC
Q 021825 70 DGYFVYDSGSKIDVWIQKADGT 91 (307)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~ 91 (307)
-+-=+.+.+...+++.++..|.
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~ 111 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGN 111 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-
T ss_pred CCHHHHhccccCCcEEECCCCC
Confidence 0101334444558888888774
No 157
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=34.96 E-value=55 Score=27.55 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCcce-EEecccccCCcceeeecCCCC-CChHHHHHHHHHCCC-eEEeecCCc
Q 021825 3 LIREFVRTFREKGIPCDV-IWMDIDYMDGFRCFTFDKERF-PDPKSLAADLHLNGF-KAIWMLDPG 65 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~-i~lD~~w~~~~~~f~~d~~~F-Pd~~~~~~~l~~~G~-k~~~~~~P~ 65 (307)
|...+++..++.+++.+. +++|...... .... ...+.+++++++.|. +.++...+.
T Consensus 75 eA~~f~~~~~~~~~~~~~~~~lD~E~~~~-------~~~~~~~~~~F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 75 EARYFANTAKSLGLSKNTVMVADMEDSSS-------SGNATANVNAFWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEeecCCC-------cchHHHHHHHHHHHHHHcCCCCcEEEccHH
Confidence 455566666777776554 4566443211 1111 124789999999998 678877663
No 158
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=34.73 E-value=72 Score=27.89 Aligned_cols=35 Identities=17% Similarity=-0.074 Sum_probs=27.9
Q ss_pred eeecCCCCCChHHHHHHHHHCCC--eEEeecCCcccc
Q 021825 34 FTFDKERFPDPKSLAADLHLNGF--KAIWMLDPGIKH 68 (307)
Q Consensus 34 f~~d~~~FPd~~~~~~~l~~~G~--k~~~~~~P~i~~ 68 (307)
.++--|.=+++..+++.+|+.|. |.++.++|....
T Consensus 95 It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~ 131 (228)
T PRK08091 95 VTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPI 131 (228)
T ss_pred EEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCH
Confidence 45555555788999999999999 999999997654
No 159
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=34.60 E-value=45 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCCChHHHHHHHHHCCCeEEeecC
Q 021825 40 RFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 40 ~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
.||+..++++.|+++|+++++..+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeC
Confidence 369999999999999999887543
No 160
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=34.46 E-value=1.1e+02 Score=28.51 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=40.0
Q ss_pred CCC-hHHHHHHHHHCCCeEEeecCCccccCCCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHH-HHHH
Q 021825 41 FPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRS-WWGS 118 (307)
Q Consensus 41 FPd-~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~-ww~~ 118 (307)
|-+ .++++...|++|+|+++.. .+ .. ..+.+|+.|+ +-.+
T Consensus 62 ~~~~~~~~~~~A~~~~v~v~~~~--------~~-~~-----------------------------~~l~~~~~R~~fi~s 103 (358)
T cd02875 62 FGDIDDELLCYAHSKGVRLVLKG--------DV-PL-----------------------------EQISNPTYRTQWIQQ 103 (358)
T ss_pred cCCCCHHHHHHHHHcCCEEEEEC--------cc-CH-----------------------------HHcCCHHHHHHHHHH
Confidence 444 3689999999999988531 00 00 1245788887 4455
Q ss_pred HHHHHhhcCccEEEecCCCC
Q 021825 119 LVKDFIYNGVDGIWNDMNEP 138 (307)
Q Consensus 119 ~l~~l~~~Gvdg~w~D~~e~ 138 (307)
.++-+.+.|+||+-+|+--|
T Consensus 104 iv~~~~~~gfDGIdIDwE~p 123 (358)
T cd02875 104 KVELAKSQFMDGINIDIEQP 123 (358)
T ss_pred HHHHHHHhCCCeEEEcccCC
Confidence 55555679999999998433
No 161
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=34.06 E-value=1.2e+02 Score=20.48 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCcc---eeeecCCCCCChHHHHHHHHH
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGFR---CFTFDKERFPDPKSLAADLHL 53 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~---~f~~d~~~FPd~~~~~~~l~~ 53 (307)
.+.+.--++.+|+|++.+.+|..+.+..+ .+..+.....+...+++.|.+
T Consensus 19 ~~~v~~~L~~~~i~~~~~~~~~~~~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 19 CLKVETYLRMAGIPYEVVFSSNPWRSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred HHHHHHHHHhCCCceEEEecCCcccCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 45566677889999999998876533221 244444445555666666554
No 162
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=33.98 E-value=47 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHCCCeEEeec
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
.-||+..++++.|+++|+++++..
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvS 52 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVT 52 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEe
Confidence 458999999999999999987653
No 163
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=33.94 E-value=1.2e+02 Score=21.20 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCC--ChHHHHHHHHHC
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFP--DPKSLAADLHLN 54 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FP--d~~~~~~~l~~~ 54 (307)
+.++.+.+.++++++|.|-.. ...-.|+.+...+. ..++++++|++-
T Consensus 18 ~~~If~~la~~~I~vd~I~~s----~~~isftv~~~~~~~~~l~~l~~el~~~ 66 (73)
T cd04934 18 LARIFAILDKYRLSVDLISTS----EVHVSMALHMENAEDTNLDAAVKDLQKL 66 (73)
T ss_pred HHHHHHHHHHcCCcEEEEEeC----CCEEEEEEehhhcChHHHHHHHHHHHHh
Confidence 467888999999999999753 23345888888775 467888998883
No 164
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=33.67 E-value=31 Score=29.91 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.8
Q ss_pred eecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 35 TFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 35 ~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
......||+..++++.||++|+++.+..+
T Consensus 91 ~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn 119 (220)
T TIGR01691 91 ELTSHLYPDVPPALEAWLQLGLRLAVYSS 119 (220)
T ss_pred CcccCcCcCHHHHHHHHHHCCCEEEEEeC
Confidence 44456899999999999999999876543
No 165
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=33.65 E-value=47 Score=27.27 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=20.2
Q ss_pred CCCChHHHHHHHHHCCCeEEeec
Q 021825 40 RFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 40 ~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
.||+..++++.|+++|+++.+..
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~T 49 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVT 49 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEe
Confidence 48999999999999999987643
No 166
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=32.74 E-value=1.9e+02 Score=20.85 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHCCCeEEeecCCccc
Q 021825 40 RFPDPKSLAADLHLNGFKAIWMLDPGIK 67 (307)
Q Consensus 40 ~FPd~~~~~~~l~~~G~k~~~~~~P~i~ 67 (307)
..|++++.++.|.++|++-++.+..++.
T Consensus 43 ~~P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 43 LGPDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 4799999999999999876665544433
No 167
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=32.72 E-value=37 Score=30.88 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCc
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPG 65 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~ 65 (307)
|.++++-+++++ +|.|.||..+... -|++.|.. ++++-+.||+.|..+.+.+.|.
T Consensus 92 i~~iv~~l~~~~--~DGidiDwE~~~~-----~d~~~~~~fl~~lr~~l~~~~~~lsv~~~p~ 147 (313)
T cd02874 92 INNILALAKKYG--YDGVNIDFENVPP-----EDREAYTQFLRELSDRLHPAGYTLSTAVVPK 147 (313)
T ss_pred HHHHHHHHHHhC--CCcEEEecccCCH-----HHHHHHHHHHHHHHHHhhhcCcEEEEEecCc
Confidence 345555555664 6999998766421 12333444 3667777777887766655554
No 168
>TIGR03356 BGL beta-galactosidase.
Probab=32.56 E-value=1.1e+02 Score=29.36 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCC--cceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccccCCCcccccccccc
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKI 81 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~--~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~ 81 (307)
..+-++.+++.|+ +++=+...|..- .++-.+|++.+--.+++++.|+++|++.++.+..+-.+ ..
T Consensus 56 y~eDi~l~~~~G~--~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P-----~~------ 122 (427)
T TIGR03356 56 YEEDVALMKELGV--DAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP-----QA------ 122 (427)
T ss_pred HHHHHHHHHHcCC--CeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc-----HH------
Confidence 3456666766654 446666677521 11123444444446799999999999999887653221 10
Q ss_pred ceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHHHhh-c--CccEEEecCCCCccc
Q 021825 82 DVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-N--GVDGIWNDMNEPAVF 141 (307)
Q Consensus 82 ~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~l~~-~--Gvdg~w~D~~e~~~~ 141 (307)
+.+.+ -|.+|+..+.|.+..+.+++ . .|+.| .=+|||..+
T Consensus 123 ---l~~~g----------------Gw~~~~~~~~f~~ya~~~~~~~~d~v~~w-~t~NEp~~~ 165 (427)
T TIGR03356 123 ---LEDRG----------------GWLNRDTAEWFAEYAAVVAERLGDRVKHW-ITLNEPWCS 165 (427)
T ss_pred ---HHhcC----------------CCCChHHHHHHHHHHHHHHHHhCCcCCEE-EEecCccee
Confidence 11111 24667777766666555543 2 36655 889999754
No 169
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=32.43 E-value=52 Score=26.16 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.7
Q ss_pred CCCChHHHHHHHHHCCCeEEeecC
Q 021825 40 RFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 40 ~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
-||+..++++.|+++|+++++..+
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~Sn 51 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVTN 51 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEeC
Confidence 489999999999999999886543
No 170
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=32.43 E-value=80 Score=26.55 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHC---CCeEEee
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN---GFKAIWM 61 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~---G~k~~~~ 61 (307)
+.|.+.+.+.+..|.++..|.||.|.. +.+-++..++.+.|+++ ++++.+.
T Consensus 27 ~~i~~~l~~W~~~G~~v~giQIDfDa~---------t~~L~~Y~~fL~~LR~~LP~~~~LSIT 80 (181)
T PF11340_consen 27 ARILQLLQRWQAAGNNVAGIQIDFDAA---------TSRLPAYAQFLQQLRQRLPPDYRLSIT 80 (181)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCcc---------ccchHHHHHHHHHHHHhCCCCceEeeE
Confidence 456777888899999999999996664 55667778899999887 5555443
No 171
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.38 E-value=96 Score=27.43 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=13.8
Q ss_pred HHHHHhhcCccEEEecCC
Q 021825 119 LVKDFIYNGVDGIWNDMN 136 (307)
Q Consensus 119 ~l~~l~~~Gvdg~w~D~~ 136 (307)
.++.+.+.||||+-.|.-
T Consensus 240 ~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 240 DYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHcCCCEEEcCCH
Confidence 455667889999988853
No 172
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=31.87 E-value=1.3e+02 Score=24.75 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC-hHHHHHHHHHCCCeEEeec
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~ 62 (307)
.++..+.+++.|||+|+-+.. -.|-|+ +.++++..+++|.++++-+
T Consensus 14 ~~~a~~~L~~~gi~~dv~V~S-------------aHRtp~~~~~~~~~a~~~g~~viIa~ 60 (156)
T TIGR01162 14 MKKAADILEEFGIPYELRVVS-------------AHRTPELMLEYAKEAEERGIKVIIAG 60 (156)
T ss_pred HHHHHHHHHHcCCCeEEEEEC-------------cccCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456777788899999988865 456665 6888999999999877653
No 173
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=31.51 E-value=59 Score=27.44 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCCc-ceEEecccccCCcceeeecCCCC-CChHHHHHHHHHCCCeEEeecCCc
Q 021825 4 IREFVRTFREKGIPC-DVIWMDIDYMDGFRCFTFDKERF-PDPKSLAADLHLNGFKAIWMLDPG 65 (307)
Q Consensus 4 v~~~~~~~~~~~iP~-d~i~lD~~w~~~~~~f~~d~~~F-Pd~~~~~~~l~~~G~k~~~~~~P~ 65 (307)
..-+++..+..++|. ..+++|....... +++.- ...+.++++|++.|++.++...+.
T Consensus 73 A~~f~~~~~~~~l~~~~~~~lDvE~~~~~-----~~~~~~~~~~~f~~~v~~~G~~~~iYt~~~ 131 (196)
T cd06415 73 ADYFLNSAQQAGLPKGSYLALDYEQGSGN-----SKAANTSAILAFMDTIKDAGYKPMLYSYKP 131 (196)
T ss_pred HHHHHHHhhhcCCCCCCEEEEEEecCCCC-----CHHHHHHHHHHHHHHHHHhCCCcEEEecHH
Confidence 333666666667754 4567775543211 11100 124788999999999988877654
No 174
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=31.38 E-value=1.2e+02 Score=32.10 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccC------Cc--ce-eeecCCCCCC---hHHHHHHHHHCCCeEEeecCC
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMD------GF--RC-FTFDKERFPD---PKSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~------~~--~~-f~~d~~~FPd---~~~~~~~l~~~G~k~~~~~~P 64 (307)
+.+.+.+..+++. .++.||+.+-+.. ++ .+ ...|+ .|.. ++.|++.+|++|+++++-+.|
T Consensus 20 ~~~~~~l~YL~~L--Gis~IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 20 DDAAELVPYFADL--GVSHLYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHHHhHHHHHc--CCCEEEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4567777777664 5677998865432 11 12 23443 3443 789999999999999987765
No 175
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=31.17 E-value=96 Score=28.65 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCCcceEEec
Q 021825 3 LIREFVRTFREKGIPCDVIWMD 24 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD 24 (307)
.|+++|+.++++|.|+|.|-+.
T Consensus 205 ~~~nlI~~LkekG~pIDgiG~Q 226 (345)
T COG3693 205 YVLNLIEELKEKGAPIDGIGIQ 226 (345)
T ss_pred HHHHHHHHHHHCCCCccceeee
Confidence 4677888888888888887765
No 176
>COG1878 Kynurenine formamidase [Amino acid transport and metabolism]
Probab=31.07 E-value=1.2e+02 Score=26.43 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCcceEEecccccCCccee-eecCCCCCCh-HHHHHHHHHCCCeEEeecCC
Q 021825 6 EFVRTFREKGIPCDVIWMDIDYMDGFRCF-TFDKERFPDP-KSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 6 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~f-~~d~~~FPd~-~~~~~~l~~~G~k~~~~~~P 64 (307)
+.++.....+ |.+.+.+-.+|...++.- .+ ...||.+ ++.++.|.++|+|.+..=.+
T Consensus 96 ~~~~a~~~~~-~g~~v~i~Tgw~~~~~~~~~f-~~~~Pg~~~eaa~~L~e~~VkaVGiDt~ 154 (218)
T COG1878 96 DDIEAWDAEH-PGDIVLIRTGWSKRWGDEPAF-QYHFPGISIEAAEYLIERGVKAVGIDTP 154 (218)
T ss_pred HHhhhhcccC-CccEEEEEccchhhcCCcchh-hccCcccCHHHHHHHHHcCCeEEEecCC
Confidence 3455555555 889999999998766541 11 5678887 68999999999997754333
No 177
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=30.34 E-value=1.2e+02 Score=29.07 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEee
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~ 61 (307)
++|+.+++.||+.|+-+.+++|- .|.+ =|....+.++|..+|+|+-..
T Consensus 91 ~dVLRLid~fr~~gl~V~sVVIT-~y~~-----------q~~a~~F~~kLe~~gIkvy~H 138 (491)
T PF08903_consen 91 QDVLRLIDDFRSRGLYVGSVVIT-QYEG-----------QPAADAFKNKLERLGIKVYRH 138 (491)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEE-CE-T------------HHHHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHHHHHhcCceeeeEEEE-ecCC-----------CHHHHHHHHHHHHCCCcEEEe
Confidence 68999999999999999999986 3321 133578999999999998754
No 178
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=30.31 E-value=44 Score=30.32 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=24.2
Q ss_pred eeecCCCCCCchHHHHHHHHHHHhcccCCCccc
Q 021825 210 ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSG 242 (307)
Q Consensus 210 ~~w~GD~~s~W~~L~~~i~~~l~~~l~G~p~~g 242 (307)
.+|.-|..| ++..+..+..+++.|+.+|.
T Consensus 261 ~Vw~~d~~S----l~~K~~~a~~~~l~Gva~W~ 289 (298)
T cd06549 261 EVWMLDAVT----LFNQLKAVQRLGPAGVALWR 289 (298)
T ss_pred EEEeccHHH----HHHHHHHHHHcCCCcEEEEe
Confidence 477767654 88888999999999999998
No 179
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=29.90 E-value=1.5e+02 Score=26.16 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCC
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P 64 (307)
+-..+.+++....++|...|+.|..| -+-..+++.|.+.|+.++.-+..
T Consensus 170 ~la~~~i~~a~~~g~~~~~vvaDs~y--------------~~~~~f~~~l~~~~~~~i~~vr~ 218 (273)
T PF13546_consen 170 ELALEMIDRARQAGIPARWVVADSWY--------------GSSPAFRKALRERGLHYIGRVRS 218 (273)
T ss_pred HHHHHHHHHHHhcccccceEEecccc--------------CChHHHHHHHHHCCceEEEeecc
Confidence 34678889999999999999988544 23477899999999988876553
No 180
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=29.08 E-value=42 Score=31.20 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC-hHHHHHHHHHC--CCeEEeecCC
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLN--GFKAIWMLDP 64 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd-~~~~~~~l~~~--G~k~~~~~~P 64 (307)
|.++++-+++++ +|.|.||..|-...+.-.-|++.|.. ++++.+.|++. ++.+.+.+.|
T Consensus 101 i~~iv~~l~~~~--~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av~~ 162 (362)
T cd02872 101 IKSAIAFLRKYG--FDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAAVSA 162 (362)
T ss_pred HHHHHHHHHHcC--CCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEecC
Confidence 445666666665 69999996664332211123334544 36777777887 5555544443
No 181
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=27.78 E-value=1.7e+02 Score=25.67 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHCCCeEEeecCCccccCCCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHH-H
Q 021825 43 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV-K 121 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l-~ 121 (307)
++..+++.+|+.|+|+++.+. .... ..+ .. =..+|+.|+=+-+.+ +
T Consensus 47 ~~~~~~~~~~~~~~kvl~sig----g~~~-~~~-------------------------~~---~~~~~~~r~~fi~~lv~ 93 (253)
T cd06545 47 ELNSVVNAAHAHNVKILISLA----GGSP-PEF-------------------------TA---ALNDPAKRKALVDKIIN 93 (253)
T ss_pred HHHHHHHHHHhCCCEEEEEEc----CCCC-Ccc-------------------------hh---hhcCHHHHHHHHHHHHH
Confidence 457889999999999987654 1110 000 00 124577776444444 4
Q ss_pred HHhhcCccEEEecCCC
Q 021825 122 DFIYNGVDGIWNDMNE 137 (307)
Q Consensus 122 ~l~~~Gvdg~w~D~~e 137 (307)
-+.+.|+||+-+|.-.
T Consensus 94 ~~~~~~~DGIdiDwE~ 109 (253)
T cd06545 94 YVVSYNLDGIDVDLEG 109 (253)
T ss_pred HHHHhCCCceeEEeec
Confidence 4457899999999843
No 182
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=27.44 E-value=27 Score=31.93 Aligned_cols=11 Identities=55% Similarity=0.933 Sum_probs=9.8
Q ss_pred CcccccCCCCC
Q 021825 239 PFSGPDIGGFD 249 (307)
Q Consensus 239 p~~g~DigGf~ 249 (307)
+++|+|||||.
T Consensus 131 iMfGPDICG~~ 141 (406)
T KOG0674|consen 131 IMFGPDICGFG 141 (406)
T ss_pred cccCCcccCCC
Confidence 67999999995
No 183
>PRK10904 DNA adenine methylase; Provisional
Probab=27.38 E-value=1.6e+02 Score=26.35 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=31.3
Q ss_pred CcceEEecccccCC--ccee-eecCCCCC-----ChHHHHHHHHHCCCeEEeecC
Q 021825 17 PCDVIWMDIDYMDG--FRCF-TFDKERFP-----DPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 17 P~d~i~lD~~w~~~--~~~f-~~d~~~FP-----d~~~~~~~l~~~G~k~~~~~~ 63 (307)
+-|.|.+|+.|... ...| .....-|. .+.++++.|+..|.|++++.+
T Consensus 174 ~~~fvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~La~~l~~l~~~~~k~ilS~~ 228 (271)
T PRK10904 174 KGSVVYCDPPYAPLSATANFTAYHTNSFSLEQQAHLAEIAEGLVERHIPVLISNH 228 (271)
T ss_pred CCcEEEECCCCCCCCCCCCCcCcccCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 67789999999632 1112 22233454 466788888889999998754
No 184
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.31 E-value=74 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 38 KERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 38 ~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
...||+..++++.|++.|+++++..+
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn 49 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTN 49 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEEC
Confidence 35689999999999999999877543
No 185
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.18 E-value=66 Score=17.59 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHcCCCcc
Q 021825 2 ILIREFVRTFREKGIPCD 19 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d 19 (307)
++..++.+++++.|+..|
T Consensus 17 ~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 17 EEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 467788888888888765
No 186
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=27.02 E-value=1.7e+02 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEeccccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYM 28 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~ 28 (307)
+.|.+.+.++++.|+..|+|+--.+|.
T Consensus 51 ~av~~a~~~L~~~Gf~PDvI~~H~GWG 77 (171)
T PF12000_consen 51 QAVARAARQLRAQGFVPDVIIAHPGWG 77 (171)
T ss_pred HHHHHHHHHHHHcCCCCCEEEEcCCcc
Confidence 457889999999999999999999995
No 187
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=26.28 E-value=1.1e+02 Score=23.55 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCcceEEecccccCCc----ce---eeecCCCCCC-----hHHHHHHHHHCCCe
Q 021825 5 REFVRTFREKGIPCDVIWMDIDYMDGF----RC---FTFDKERFPD-----PKSLAADLHLNGFK 57 (307)
Q Consensus 5 ~~~~~~~~~~~iP~d~i~lD~~w~~~~----~~---f~~d~~~FPd-----~~~~~~~l~~~G~k 57 (307)
.-++++|.+.|.-.+.-|.|..|.+.. .+ -.....-||+ +++-+..|+++|+.
T Consensus 55 ~lv~~EM~~RGY~~~~~W~d~~yRG~~~~~y~~l~~~~~~~PiY~eHd~~Yl~eCl~NL~~KgI~ 119 (120)
T TIGR02328 55 LLVMEEMATRGYHVSKQWLDPNYRGQNCPNYDLLEEIKLTTPIYPEHNDDYLNECLANLRAKGII 119 (120)
T ss_pred HHHHHHHHHcCCCCChhhcCccccCCcCCcccccchhhcCCCCChhhhHHHHHHHHHHHHHcCcc
Confidence 357899999999999999999996432 11 1233344554 56788889998873
No 188
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=25.99 E-value=1.9e+02 Score=24.79 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
.+.++++.+++.+.....|.+- ++ +|-..|+..++++.|+++|+++.+-.+
T Consensus 57 ~~~~I~~~i~~~~~~~~~V~lT----GG------EP~~~~~l~~Ll~~l~~~g~~~~lETn 107 (212)
T COG0602 57 SADEILADIKSLGYKARGVSLT----GG------EPLLQPNLLELLELLKRLGFRIALETN 107 (212)
T ss_pred CHHHHHHHHHhcCCCcceEEEe----CC------cCCCcccHHHHHHHHHhCCceEEecCC
Confidence 3556666776665555555544 11 133456788888888888888776543
No 189
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.79 E-value=1.4e+02 Score=20.14 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCcceEEecccc-cCCcceeeecCCCCC-ChHHHHHHHHHC
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDY-MDGFRCFTFDKERFP-DPKSLAADLHLN 54 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w-~~~~~~f~~d~~~FP-d~~~~~~~l~~~ 54 (307)
.+.++.+.+.+.++.++.+..+.+- ......|++...... .++++++.|++.
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i 66 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREI 66 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcC
Confidence 3567888899999999999875322 112345888877777 788999999876
No 190
>PRK15452 putative protease; Provisional
Probab=25.38 E-value=2.7e+02 Score=26.97 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=28.5
Q ss_pred CCCcceEEecccccC---CcceeeecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 15 GIPCDVIWMDIDYMD---GFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 15 ~iP~d~i~lD~~w~~---~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
....|+|++-..-.. ....|+. .++++.++..|+.|.|+.+.++
T Consensus 21 ~~GADaVY~G~~~~~~R~~~~~f~~-----edl~eav~~ah~~g~kvyvt~n 67 (443)
T PRK15452 21 AYGADAVYAGQPRYSLRVRNNEFNH-----ENLALGINEAHALGKKFYVVVN 67 (443)
T ss_pred HCCCCEEEECCCccchhhhccCCCH-----HHHHHHHHHHHHcCCEEEEEec
Confidence 346888987532111 1123443 3689999999999999877544
No 191
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.04 E-value=2.5e+02 Score=24.16 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCCh--HHHHHHHHHCCCeEEeecCCcccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDP--KSLAADLHLNGFKAIWMLDPGIKH 68 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~--~~~~~~l~~~G~k~~~~~~P~i~~ 68 (307)
+.+++.++++|+. +|.+++-.-|... .+..|.. +++.+.|-+.|+-+++--+|++..
T Consensus 162 ~~~~~~i~~lr~~---~D~vIv~~H~G~e-------~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 162 ERIAADIAEAKKK---ADIVIVSLHWGVE-------YSYYPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred HHHHHHHHHHhhc---CCEEEEEecCccc-------CCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 4577888888876 8999888666322 2245665 578888888999999988898764
No 192
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=25.00 E-value=2.8e+02 Score=24.50 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccC-CcceeeecCCCCCChHHHHHHHHHCCCeEEee-cCCcccc
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMD-GFRCFTFDKERFPDPKSLAADLHLNGFKAIWM-LDPGIKH 68 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~-~~P~i~~ 68 (307)
|-+++++.+.+.++|+-+=+.- .+.. ....-..-..+|-+.++|.+.|++++++.++- .|||-..
T Consensus 13 egr~la~~L~~~g~~v~~Svat-~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~ 79 (248)
T PRK08057 13 EARALARALAAAGVDIVLSLAG-RTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQ 79 (248)
T ss_pred HHHHHHHHHHhCCCeEEEEEcc-CCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHH
Confidence 5678899998888877654433 3322 11122333567889999999999999999885 5788643
No 193
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=24.88 E-value=2.2e+02 Score=18.93 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHC-CCeEE
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFKAI 59 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~-G~k~~ 59 (307)
.+.++.+.+.++++.+..+.....-.++.....+.-+. +.++++++.|++. |++-+
T Consensus 12 ~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~-~~~~~~~~~l~~~~~v~~v 68 (73)
T cd04902 12 VIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE-PVPDEVLEELRALPGILSA 68 (73)
T ss_pred HHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC-CCCHHHHHHHHcCCCccEE
Confidence 46678888999999998777543322334444443333 6678999999985 66543
No 194
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=24.85 E-value=51 Score=25.62 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHHHCCCeEEee
Q 021825 40 RFPDPKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 40 ~FPd~~~~~~~l~~~G~k~~~~ 61 (307)
.||+..++++.|+++|+++.+.
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~ 51 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALA 51 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEE
Confidence 5889999999999999998764
No 195
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.73 E-value=2.8e+02 Score=23.59 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHCCCeEEeecCC
Q 021825 42 PDPKSLAADLHLNGFKAIWMLDP 64 (307)
Q Consensus 42 Pd~~~~~~~l~~~G~k~~~~~~P 64 (307)
......+++++++|++++..-.+
T Consensus 67 ~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 67 DSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHhhcCceEEEEecc
Confidence 45678999999999998886555
No 196
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=24.67 E-value=61 Score=27.19 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=18.5
Q ss_pred hHHHHHHHHHCCCeEEeecCCc
Q 021825 44 PKSLAADLHLNGFKAIWMLDPG 65 (307)
Q Consensus 44 ~~~~~~~l~~~G~k~~~~~~P~ 65 (307)
.+++++.|++.|.++++...+.
T Consensus 115 ~~~f~~~v~~~G~~~~iY~~~~ 136 (191)
T cd06414 115 ANAFCETIEAAGYYPGIYANLS 136 (191)
T ss_pred HHHHHHHHHHcCCCeEEEecHH
Confidence 4788999999999999887764
No 197
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=24.42 E-value=66 Score=30.49 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=23.3
Q ss_pred eecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 35 TFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 35 ~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
.|++++| |+++.++.+++.|+|.++.+.
T Consensus 75 ~F~p~~f-D~~~Wa~~~k~AGakY~vlTa 102 (384)
T smart00812 75 QFTAEKF-DPEEWADLFKKAGAKYVVLTA 102 (384)
T ss_pred cCCchhC-CHHHHHHHHHHcCCCeEEeee
Confidence 3677777 899999999999999887543
No 198
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=24.14 E-value=95 Score=27.53 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCccc
Q 021825 6 EFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGIK 67 (307)
Q Consensus 6 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~ 67 (307)
.+++-+++++ +|.|-||+.|.. -|++.|.. ++++.+.|++.|.-.+..+.|...
T Consensus 104 S~~~~l~~~~--fDGiDiDwE~~~------~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~ 158 (253)
T cd06544 104 SLTSIIQTYN--LDGIDIDYEHFP------ADPDTFVECIGQLITELKNNGVIKVASIAPSED 158 (253)
T ss_pred HHHHHHHHhC--CCceeeecccCC------cCHHHHHHHHHHHHHHhhhcCCeEEEEecCCcc
Confidence 3444555554 888877766531 13445554 478899999888555555556543
No 199
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=24.09 E-value=2.3e+02 Score=25.87 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCCCCChHHHHHHHHHCC-CeEEeecC
Q 021825 38 KERFPDPKSLAADLHLNG-FKAIWMLD 63 (307)
Q Consensus 38 ~~~FPd~~~~~~~l~~~G-~k~~~~~~ 63 (307)
++.+|++.++++.+|+.| +++.+..+
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTN 117 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTN 117 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeC
Confidence 788999999999999999 56555544
No 200
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=24.01 E-value=2.5e+02 Score=24.81 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=14.8
Q ss_pred ChHHHHHHHHHCCCeEEeecC
Q 021825 43 DPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 43 d~~~~~~~l~~~G~k~~~~~~ 63 (307)
.+.+-++.|++.|+|+++.+-
T Consensus 60 ~~~~~i~~~~~~g~KVllSiG 80 (256)
T cd06546 60 TLWTELAILQSSGVKVMGMLG 80 (256)
T ss_pred HHHHHHHHHHhCCCEEEEEEC
Confidence 344445678889999998653
No 201
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.96 E-value=84 Score=26.95 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHCCCeEEeec
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
+.=|..++++..||++|.++.+.-
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liS 111 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLIS 111 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEc
Confidence 345789999999999999998763
No 202
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=23.75 E-value=63 Score=29.50 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCcceEEec-ccccCCcceeeecCCCCCC-hHHHHHHHHHCCCeEEeecCCcc
Q 021825 5 REFVRTFREKGIPCDVIWMD-IDYMDGFRCFTFDKERFPD-PKSLAADLHLNGFKAIWMLDPGI 66 (307)
Q Consensus 5 ~~~~~~~~~~~iP~d~i~lD-~~w~~~~~~f~~d~~~FPd-~~~~~~~l~~~G~k~~~~~~P~i 66 (307)
..+++-++++ .+|.|.|| ..+-...+. .-|++.|-. ++++-+.||+.|..+.+.+.|..
T Consensus 98 ~s~~~~~~~~--~~DGidiD~we~p~~~~~-~~d~~~~~~~l~el~~~l~~~~~~l~~~v~~~~ 158 (318)
T cd02876 98 KLLVTTAKKN--HFDGIVLEVWSQLAAYGV-PDKRKELIQLVIHLGETLHSANLKLILVIPPPR 158 (318)
T ss_pred HHHHHHHHHc--CCCcEEEechhhhcccCC-HHHHHHHHHHHHHHHHHHhhcCCEEEEEEcCcc
Confidence 3445555555 48888887 333221111 011222322 36777778888988888776644
No 203
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=23.60 E-value=1.9e+02 Score=22.63 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHH
Q 021825 1 MILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHL 53 (307)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~ 53 (307)
++||..+++.+|+.||.+.+++.-.=... .+-|-..=.---||..+.+.+++
T Consensus 67 ~~EV~pvi~aL~~~GI~vtAlHNH~l~e~-Prl~ymH~~~~gdp~~lA~~vr~ 118 (123)
T PF07485_consen 67 EDEVNPVISALRKNGIEVTALHNHWLFEQ-PRLFYMHIWGVGDPAKLARKVRA 118 (123)
T ss_pred HHHHHHHHHHHHHCCceEEEEecccccCC-CCEEEEEEEecCCHHHHHHHHHH
Confidence 36899999999999999999984422221 11111111122467888877775
No 204
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=23.56 E-value=75 Score=27.40 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCC-cceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccc
Q 021825 3 LIREFVRTFREKGIP-CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIK 67 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP-~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~ 67 (307)
+-.+-++..++.|+| -..|++|.++-... -+++..--|=++...+.|+..|+++.+.-+..+.
T Consensus 90 dA~~A~~~A~~lG~p~gs~IYfavD~d~~~--~~~~~~v~~Y~~a~~~~l~~~gY~~GiYg~~~~~ 153 (212)
T cd06418 90 DARDAVAAARALGFPPGTIIYFAVDFDALD--DEVTEVILPYFRGWNDALHEAGYRIGIYGSRNVC 153 (212)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeecCCCc--chhHHHHHHHHHHHHHHHHhcCCceeEEcChHHH
Confidence 456677888889999 56677776653211 1122222234689999999999999988776543
No 205
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=23.29 E-value=2e+02 Score=27.42 Aligned_cols=46 Identities=7% Similarity=0.066 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEE
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAI 59 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~ 59 (307)
++|.+-++.++++++++.+.. ++++.....++++++.+++.|++.+
T Consensus 153 ~~v~~~i~~l~~~gi~~~i~~------------vv~~~n~~~~~e~~~~~~~lg~~~~ 198 (412)
T PRK13745 153 VKVMKGINLLKKHGVEWNAMA------------VVNDFNADYPLDFYHFFKELDCHYI 198 (412)
T ss_pred HHHHHHHHHHHHcCCCEEEEE------------EEcCCccccHHHHHHHHHHcCCCeE
Confidence 457777888888888775543 3445566778999999999999864
No 206
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=23.27 E-value=64 Score=30.69 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecC-CCCCC-hHHHHHHHHHCCCeEEeecCCccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDK-ERFPD-PKSLAADLHLNGFKAIWMLDPGIK 67 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~-~~FPd-~~~~~~~l~~~G~k~~~~~~P~i~ 67 (307)
.+|.+.++..++.|-.+|+|++|+.=......-+|+- ..|++ .....+.|...|.-+..+.+..+.
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 5788999999999999999999987654433322321 12233 344555555556544444444433
No 207
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=23.25 E-value=1.5e+02 Score=24.86 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHC-CCeEEee
Q 021825 7 FVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFKAIWM 61 (307)
Q Consensus 7 ~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~-G~k~~~~ 61 (307)
++.-+++...++.+|++|.++ .||+.-++++++.++ |++++..
T Consensus 8 ll~L~~~~~~~~~vifvDTg~------------~FpET~~~~d~~~~~~~l~i~~~ 51 (191)
T TIGR02055 8 LVDLAAKVRPDVKVFFLDTGR------------LFKETYETIDQVRERYDILIDVL 51 (191)
T ss_pred HHHHHHhcCCCCcEEEecCCC------------CCHHHHHHHHHHHHHhCCceEEE
Confidence 445556666778899999877 388888888888776 7766554
No 208
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=23.17 E-value=1.3e+02 Score=27.61 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=27.8
Q ss_pred cCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHC-CCeEEee
Q 021825 14 KGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLN-GFKAIWM 61 (307)
Q Consensus 14 ~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~-G~k~~~~ 61 (307)
.++|+.++++|.+| .||..-++.+++.+. |+++++.
T Consensus 64 ~~~~~pvl~VDTG~------------~FpEt~efrD~~a~~~gl~Liv~ 100 (312)
T PRK12563 64 TRPPFPLLHVDTTW------------KFREMIDFRDRRAKELGLDLVVH 100 (312)
T ss_pred cCCCeeEEEeCCCC------------CCHHHHHHHHHHHHHhCCcEEEe
Confidence 37888899999777 488888888887665 8777654
No 209
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=22.98 E-value=1.8e+02 Score=26.36 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=38.3
Q ss_pred hHHHHHHHHHCCCeEEeecCCccccCCCccccccccccceeEEcCCCCceeeeecCCCccCCCCCChHHHHHHHHHHHH-
Q 021825 44 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD- 122 (307)
Q Consensus 44 ~~~~~~~l~~~G~k~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~l~~- 122 (307)
.+.+++..|++|+|+++.+.=.-. +. +. ... ... =+.+|++|+-+-+.+.+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~---~~--~~-------------~~~--------~~~--~l~~~~~r~~fi~~iv~~ 98 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTN---GN--FD-------------SEL--------AHA--VLSNPEARQRLINNILAL 98 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCC---CC--CC-------------HHH--------HHH--HhcCHHHHHHHHHHHHHH
Confidence 468999999999999976531110 00 00 000 000 02457878755444444
Q ss_pred HhhcCccEEEecCC
Q 021825 123 FIYNGVDGIWNDMN 136 (307)
Q Consensus 123 l~~~Gvdg~w~D~~ 136 (307)
+.+.|+||+-+|+-
T Consensus 99 l~~~~~DGidiDwE 112 (313)
T cd02874 99 AKKYGYDGVNIDFE 112 (313)
T ss_pred HHHhCCCcEEEecc
Confidence 44789999999983
No 210
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=22.94 E-value=1.9e+02 Score=33.03 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCC----c----ce-eeecCCCCC---ChHHHHHHHHHCCCeEEeecCC-ccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG----F----RC-FTFDKERFP---DPKSLAADLHLNGFKAIWMLDP-GIK 67 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~----~----~~-f~~d~~~FP---d~~~~~~~l~~~G~k~~~~~~P-~i~ 67 (307)
+++.+.+..+++ +.++.||+.+-+... + .+ +..|+ .|. +++.+++.+|++|+++++-+.| +++
T Consensus 758 ~~~~~~l~Yl~~--LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp-~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 758 ADAEAILPYLAA--LGISHVYASPILKARPGSTHGYDIVDHSQINP-EIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHhHHHHH--cCCCEEEECCCcCCCCCCCCCCCCCCCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 456677777765 566789998766521 1 12 23433 333 3789999999999999997766 443
No 211
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=22.87 E-value=1e+02 Score=25.45 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCC----cceeeecCCCCC-ChHHHHHHHHHCCCeEEeecC
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDG----FRCFTFDKERFP-DPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~----~~~f~~d~~~FP-d~~~~~~~l~~~G~k~~~~~~ 63 (307)
..+++.+.+...+ .|+|.+++.|.+. ...|+.....=| +..++++.....--++++.+.
T Consensus 57 ~~~~~~~~~~~~~-~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LP 120 (163)
T PF09445_consen 57 FFELLKRLKSNKI-FDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLP 120 (163)
T ss_dssp HHHHGGGB-------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEE
T ss_pred HHHHHhhcccccc-ccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeC
Confidence 3444444444445 8999999999641 234666443334 578888888777666666543
No 212
>PRK11440 putative hydrolase; Provisional
Probab=22.68 E-value=2.4e+02 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDY 27 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w 27 (307)
..+..+++.+|++|+|+ |++-..|
T Consensus 35 ~~i~~l~~~ar~~g~pV--i~~~~~~ 58 (188)
T PRK11440 35 ARAARLAAKFRASGSPV--VLVRVGW 58 (188)
T ss_pred HHHHHHHHHHHHcCCcE--EEEeccc
Confidence 45788999999999996 5543333
No 213
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.54 E-value=70 Score=26.61 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=19.1
Q ss_pred hHHHHHHHHHC-CCeEEeecCCcc
Q 021825 44 PKSLAADLHLN-GFKAIWMLDPGI 66 (307)
Q Consensus 44 ~~~~~~~l~~~-G~k~~~~~~P~i 66 (307)
.+++++.|++. |.++++...+..
T Consensus 105 ~~~f~~~v~~~~G~~~~iY~~~~~ 128 (184)
T cd06525 105 VLRFIEEFEKLSGLKVGIYTYTSF 128 (184)
T ss_pred HHHHHHHHHHHHCCCeEEEecHHH
Confidence 47899999998 999999887643
No 214
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=22.16 E-value=1.7e+02 Score=21.66 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=34.2
Q ss_pred HHHHHHHHcC---CCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCC-CeEEe
Q 021825 6 EFVRTFREKG---IPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNG-FKAIW 60 (307)
Q Consensus 6 ~~~~~~~~~~---iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G-~k~~~ 60 (307)
.+.......+ ..+.++....+-.--.....-.....+++.++++.|++.| +++..
T Consensus 22 ~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~~ 80 (122)
T PF02635_consen 22 RLANAAAAMGDYGHDVVVFFHGDGVKLALKDQKPNPEGDPPLQELLKELKEAGGVKIYV 80 (122)
T ss_dssp HHHHHHHHTTHTTSEEEEEE-GGGGGGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHcCCCCCcEEEEEEchHHHHHHhcccccccccccHHHHHHHHHhcCCcEEEE
Confidence 3444555666 8888777665443221212233456888999999999997 88764
No 215
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=22.03 E-value=1e+02 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCCCChHHHHHHHHHCCCeEEeecC
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
..||+..++++.|+++|+++.+..+
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn 116 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSN 116 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeC
Confidence 4689999999999999999877544
No 216
>PRK11587 putative phosphatase; Provisional
Probab=21.99 E-value=92 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHHHHCCCeEEeecC
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
..||+..++++.|+++|+++.+..+
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn 107 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTS 107 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcC
Confidence 4589999999999999999887544
No 217
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.88 E-value=2.7e+02 Score=21.19 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEE
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAI 59 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~ 59 (307)
+.+.++++++.+.|+. .+|+-.+ -.-+++++.+++.|++++
T Consensus 66 ~~~~~~v~~~~~~g~~--~v~~~~g---------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVK--AVWLQPG---------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHT-S--EEEE-TT---------------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHcCCC--EEEEEcc---------------hHHHHHHHHHHHcCCEEE
Confidence 3567888888888744 5666544 233678888888888876
No 218
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=21.61 E-value=1.4e+02 Score=27.95 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecCCccc
Q 021825 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLDPGIK 67 (307)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~P~i~ 67 (307)
++..+.++.++++|+- .|....---. +-..+....++++++.+|+.|+++++-|+|.+-
T Consensus 14 ~~~~~yi~~a~~~Gf~--~iFTSL~ipe-----~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 14 EENKAYIEKAAKYGFK--RIFTSLHIPE-----DDPEDYLERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp HHHHHHHHHHHCTTEE--EEEEEE--------------HHHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred HHHHHHHHHHHHCCCC--EEECCCCcCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 3556666666665542 2332211100 001223345688888889999998888888554
No 219
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.49 E-value=2.9e+02 Score=19.22 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCC---hH-HHHHHHHHCC
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPD---PK-SLAADLHLNG 55 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd---~~-~~~~~l~~~G 55 (307)
+.++.+.+.+++|++|.|... ...-.|+.+...... ++ ++++.|++.+
T Consensus 18 ~~~IF~~La~~~I~VDmI~~s----~~~iSftv~~~d~~~~~~~~~~l~~~l~~~~ 69 (75)
T cd04932 18 LAKVFGILAKHNISVDLITTS----EISVALTLDNTGSTSDQLLTQALLKELSQIC 69 (75)
T ss_pred HHHHHHHHHHcCCcEEEEeec----CCEEEEEEeccccchhHHHHHHHHHHHHhcc
Confidence 457888899999999999752 233458887766542 54 7888888844
No 220
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.40 E-value=48 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHCCCeEEeecCCc
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWMLDPG 65 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~~~P~ 65 (307)
.-|-|++-+++.+++.|+++++++.|.
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~Pv 59 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPV 59 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE---
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCC
Confidence 346678899999999999999988874
No 221
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=21.27 E-value=1.1e+02 Score=25.14 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=19.8
Q ss_pred CCCCChHHHHHHHHHCCCeEEee
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWM 61 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~ 61 (307)
..||+..++++.|+++|+++.+.
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~ 51 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVA 51 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEE
Confidence 35899999999999999998764
No 222
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=21.07 E-value=1.6e+02 Score=21.06 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=33.0
Q ss_pred CChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHhh
Q 021825 252 ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 302 (307)
Q Consensus 252 ~~~EL~~RW~Q~~af~P~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~i~l~~ 302 (307)
.+++...+|++.|..-|.-. . +=|.|+.+...-++++.+|.+
T Consensus 12 i~~~~l~~lve~Gli~p~~~--------~-~~~~f~~~~l~rl~~~~rL~~ 53 (84)
T PF13591_consen 12 IEPEFLRELVEEGLIEPEGE--------E-EEWYFSEEDLARLRRIRRLHR 53 (84)
T ss_pred cCHHHHHHHHHCCCeeecCC--------C-CeeeECHHHHHHHHHHHHHHH
Confidence 47888999999999999653 2 345698888888888888765
No 223
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=21.06 E-value=1.1e+02 Score=24.72 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHCCCeEEeec
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
..+|+..++++.|+++|+++.+..
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s 110 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALAS 110 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEe
Confidence 568999999999999999887643
No 224
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=21.04 E-value=1e+02 Score=27.96 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCcceEEecccccCCc--ceeeecCCCCCChHHHHHHHHHCCCeEEeec
Q 021825 4 IREFVRTFREKGIPCDVIWMDIDYMDGF--RCFTFDKERFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~lD~~w~~~~--~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
+.+.++.+.+.| +|.|+++++|.... ..=.|.+--.|-.+++++.+|+.|.++++.+
T Consensus 170 ~~~~~~~~~~~G--~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~ 228 (330)
T cd03465 170 IIRYADALIEAG--ADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHHHHHHHhC--CCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEE
Confidence 455666666664 58899998885321 1111222224667999999999887766543
No 225
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=20.87 E-value=1.7e+02 Score=25.94 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.7
Q ss_pred cceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 18 CDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 18 ~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
+++|.+|.+ |.+--..+.+|...+.++.|+++|+++++..+
T Consensus 2 ~~~~~~D~D-----Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tn 42 (279)
T TIGR01452 2 AQGFIFDCD-----GVLWLGERVVPGAPELLDRLARAGKAALFVTN 42 (279)
T ss_pred ccEEEEeCC-----CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeC
Confidence 356666632 23322355789999999999999999877654
No 226
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=20.63 E-value=1e+02 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHCCCeEEeecC
Q 021825 39 ERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 39 ~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
..||+..++++.|+++|+++.+..+
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn 118 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITN 118 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeC
Confidence 4689999999999999999876543
No 227
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=20.52 E-value=77 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=18.2
Q ss_pred eecCCCCCChHHHHHHHHHCCCeEEeec
Q 021825 35 TFDKERFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 35 ~~d~~~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
.|+++.| |+++.++.+++.|+|.++.+
T Consensus 85 ~F~p~~f-D~dqW~~~ak~aGakY~VlT 111 (346)
T PF01120_consen 85 QFNPTKF-DADQWAKLAKDAGAKYVVLT 111 (346)
T ss_dssp G---TT---HHHHHHHHHHTT-SEEEEE
T ss_pred hCCcccC-CHHHHHHHHHHcCCCEEEee
Confidence 4667777 89999999999999988754
No 228
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=20.48 E-value=1.1e+02 Score=25.41 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=21.3
Q ss_pred CCCCCChHHHHHHHHHCCCeEEeec
Q 021825 38 KERFPDPKSLAADLHLNGFKAIWML 62 (307)
Q Consensus 38 ~~~FPd~~~~~~~l~~~G~k~~~~~ 62 (307)
.+-||+..++++.|+++|+++.+..
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~S 68 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATAS 68 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEe
Confidence 4568999999999999999987643
No 229
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=20.43 E-value=1.1e+02 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 38 KERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 38 ~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
..-||+..++++.|+++|+++++..+
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn 99 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATG 99 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeC
Confidence 35689999999999999999877554
No 230
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=20.38 E-value=1e+02 Score=24.45 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCcceEEecccccCCcceeeecCCCCCChHHHHHHHHHCCCe-EEeecCCc
Q 021825 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLAADLHLNGFK-AIWMLDPG 65 (307)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~f~~d~~~FPd~~~~~~~l~~~G~k-~~~~~~P~ 65 (307)
|...+.+-+.++|+|-+.|.++..- .+.+-+.....+.+.+.|.+ +++..+|+
T Consensus 55 ea~~~~~~l~~~gvp~~~I~~e~~s----------~~T~ena~~~~~~~~~~~~~~iilVT~~~ 108 (155)
T PF02698_consen 55 EAEAMRDYLIELGVPEERIILEPKS----------TNTYENARFSKRLLKERGWQSIILVTSPY 108 (155)
T ss_dssp HHHHHHHHHHHT---GGGEEEE--------------SHHHHHHHHHHHHHT-SSS-EEEE--CC
T ss_pred HHHHHHHHHHhcccchheeEccCCC----------CCHHHHHHHHHHHHHhhcCCeEEEECCHH
Confidence 4455666777789999999987442 22344667788888888874 45544554
No 231
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=20.12 E-value=1.2e+02 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 38 KERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 38 ~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
...||+..++++.|+++|+++.+..+
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~ 109 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTN 109 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeC
Confidence 35789999999999999999876543
No 232
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=20.08 E-value=1.3e+02 Score=23.66 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=21.6
Q ss_pred CCCCCChHHHHHHHHHCCCeEEeecC
Q 021825 38 KERFPDPKSLAADLHLNGFKAIWMLD 63 (307)
Q Consensus 38 ~~~FPd~~~~~~~l~~~G~k~~~~~~ 63 (307)
...+|+..++++.|+++|+++++..+
T Consensus 76 ~~~~~~~~~~L~~l~~~~~~~~i~Sn 101 (176)
T PF13419_consen 76 LQPYPGVRELLERLKAKGIPLVIVSN 101 (176)
T ss_dssp EEESTTHHHHHHHHHHTTSEEEEEES
T ss_pred cchhhhhhhhhhhcccccceeEEeec
Confidence 35689999999999999999876543
No 233
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=20.03 E-value=2e+02 Score=25.57 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCeEEe-ecCCccccCCCccccccccccceeEEcCCC
Q 021825 45 KSLAADLHLNGFKAIW-MLDPGIKHEDGYFVYDSGSKIDVWIQKADG 90 (307)
Q Consensus 45 ~~~~~~l~~~G~k~~~-~~~P~i~~~~~~~~~~~~~~~~~~~~~~~g 90 (307)
..+-..|+++|+++.. =++|+++.+.+ +.+--.+..+||.+..+
T Consensus 20 as~g~ll~~~g~~v~~~K~DpYlNvd~G--tmsP~~HGEvfVt~DG~ 64 (255)
T cd03113 20 ASLGRLLKARGLKVTAQKLDPYLNVDPG--TMSPYQHGEVFVTDDGA 64 (255)
T ss_pred HHHHHHHHHCCCeEEEEeecccccCCCC--CCCCccceeEEEccCCC
Confidence 3466778999999865 48999988754 23333456778876544
Done!