Query 021826
Match_columns 307
No_of_seqs 112 out of 177
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04674 Phi_1: Phosphate-indu 100.0 3E-130 6E-135 914.7 25.5 267 39-307 1-273 (273)
2 PF15232 DUF4585: Domain of un 60.0 9.3 0.0002 30.6 2.8 39 263-303 3-41 (75)
3 PF07172 GRP: Glycine rich pro 46.2 14 0.0003 30.4 1.9 29 1-29 1-29 (95)
4 TIGR01432 QOXA cytochrome aa3 45.3 13 0.00028 34.2 1.7 13 137-149 137-149 (217)
5 MTH00139 COX2 cytochrome c oxi 34.4 25 0.00053 32.6 1.8 14 137-150 147-160 (226)
6 PF12553 DUF3742: Protein of u 27.2 1.1E+02 0.0024 22.9 3.8 51 219-273 3-54 (54)
7 MTH00038 COX2 cytochrome c oxi 27.2 39 0.00085 31.5 1.8 14 137-150 147-160 (229)
8 MTH00023 COX2 cytochrome c oxi 25.6 42 0.00091 31.5 1.7 14 137-150 158-171 (240)
9 MTH00168 COX2 cytochrome c oxi 24.8 45 0.00098 30.9 1.8 18 137-155 147-164 (225)
10 MTH00154 COX2 cytochrome c oxi 22.3 49 0.0011 30.8 1.5 19 137-156 147-165 (227)
11 MTH00008 COX2 cytochrome c oxi 20.3 63 0.0014 30.1 1.8 14 137-150 147-160 (228)
12 MTH00027 COX2 cytochrome c oxi 20.3 64 0.0014 31.0 1.8 14 137-150 181-194 (262)
13 PF11305 DUF3107: Protein of u 20.2 56 0.0012 26.0 1.2 10 285-294 45-54 (74)
No 1
>PF04674 Phi_1: Phosphate-induced protein 1 conserved region; InterPro: IPR006766 This entry represents a family of conserved plant proteins. A conserved region in these proteins was identified in a phosphate-induced protein of unknown function [].
Probab=100.00 E-value=2.7e-130 Score=914.70 Aligned_cols=267 Identities=62% Similarity=1.170 Sum_probs=259.2
Q ss_pred eeecCCceeecceEEEEEEeeccChhhHHHHHHHHHhcCCCC-CCCCchhhHhhhhhhccCCC-----CcEEEeeEEecC
Q 021826 39 LKYHNGALLKGNVTVNLIWYGKFTPIQRSIIVDFIHSLNFNR-APQPSTSSWWKTTENYKGGS-----SNLVVRHQVLLE 112 (307)
Q Consensus 39 l~YH~GpvLtg~i~V~lIwYG~f~p~qksii~DFl~Sls~~~-~~~Psvs~WW~t~~~Y~~~s-----~~v~l~~q~~D~ 112 (307)
|+|||||||+|+|+|||||||+|+|+||+||+|||+||++++ +++|||++||+|+++|++++ .+|+|++|+.|+
T Consensus 1 L~YH~GplLtg~i~V~lIWYG~ftp~QkaiI~DFl~SLs~~~~~~~PSVa~WW~t~~~Y~~~~~~~~~~~v~l~~qv~D~ 80 (273)
T PF04674_consen 1 LTYHGGPLLTGNINVYLIWYGRFTPAQKAIIRDFLRSLSSSAPAPSPSVAQWWKTTEKYYDQAGANVSGRVVLGGQVSDE 80 (273)
T ss_pred CCCCCCceeecCeeEEEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCChhhhhhhHHhhcccccccccceEEEeeEEecC
Confidence 799999999999999999999999999999999999999886 58999999999999999875 689999999999
Q ss_pred CCCCCccCchhhHHHHHhhhCCCCCCceEEEeccCCcccccccccccCCCCCCCCCCCCCcceeEEEecCCCCCCCCCCC
Q 021826 113 NYSLGKALKKVHLLALSKKVTNTLPTSINVVLTAKDVAVDGFCMNRCGTHGSALPGRGLASRGTYIWVGNSETQCPGYCA 192 (307)
Q Consensus 113 ~ySlGksLs~~~i~~lv~~a~P~~~~~vylVLTa~DV~v~gFC~~~CG~H~~~~~s~~~~~~~~YawVGNs~~qCPg~CA 192 (307)
+|||||+||++||++||+++. .++|+|||||||+||+||||||++||+|++++++ ..+.+++|+||||||+||||+||
T Consensus 81 ~ySlGksL~~~~i~~lv~~~~-~~~~gvylVLTa~DV~v~gFC~~~CG~H~~~~~~-~~~~~~~YawVGns~~qCPg~CA 158 (273)
T PF04674_consen 81 NYSLGKSLSRSQIQQLVAKAI-PDPNGVYLVLTAADVAVEGFCMSRCGFHGSTFPS-SVGKRLPYAWVGNSETQCPGQCA 158 (273)
T ss_pred CCCCCcccCHHHHHHHHHhcC-CCCCceEEEEecccceecccccccccCCcCCccc-ccccceeEEEecCccCCCCCCCC
Confidence 999999999999999999996 4899999999999999999999999999999876 45679999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHhhhhcCCCCCCcccCCCCCCcccccccCCcccCCCCCCCCceeee
Q 021826 193 WPFHQPIYGPQTPPLVAPNGDVGVDGMIINLATLLANTVTNPFNNGYFQGPPTAPIEAATACTGVFGSGSYPGYPGRVLV 272 (307)
Q Consensus 193 wPF~~p~ygPq~~pl~~PNgDvGvDGMvi~iA~~LA~~~TNP~~ng~yqg~~~aplEaadaC~giyG~GaypGy~G~ll~ 272 (307)
||||||+||||++||++||||||||||||||||||||++||||+||||||+++||+||+|+|+||||+||||||+|+|++
T Consensus 159 wPf~~p~ygp~~~~l~~PNgDvGvDGMvi~iA~~LA~~~TNP~~~g~yqg~~~aplEaa~aC~giyG~Gaypgy~G~l~v 238 (273)
T PF04674_consen 159 WPFHQPIYGPQGPPLVPPNGDVGVDGMVINIAHELAGAVTNPFGNGYYQGDATAPLEAADACAGIYGSGAYPGYPGQLLV 238 (273)
T ss_pred CCCcccccCCCCCCccCCCCCcchhhHHHHHHHHHHHhhcCccccccccCCCCCccchhhhccccccCCCCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCceeeeeccccCCCCCcccCC
Q 021826 273 DKVSGASYNAHGINGRKYLVPAMWDPQTSGCKTTV 307 (307)
Q Consensus 273 D~~tGASyN~~G~~GRkfLlpa~wdp~t~~C~~~~ 307 (307)
|++||||||++|+|||||||||||||+|++|+|+|
T Consensus 239 D~~tGaSyN~~G~~gRkfLlpa~wdP~t~~C~t~v 273 (273)
T PF04674_consen 239 DPATGASYNANGVNGRKFLLPALWDPETSSCSTLV 273 (273)
T ss_pred cCCCCceeeccccCCceEEeecccCCCcCcccccC
Confidence 99999999999999999999999999999999997
No 2
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=59.99 E-value=9.3 Score=30.57 Aligned_cols=39 Identities=28% Similarity=0.429 Sum_probs=26.8
Q ss_pred CCCCCceeeecCCCCcccccccCCCceeeeeccccCCCCCc
Q 021826 263 YPGYPGRVLVDKVSGASYNAHGINGRKYLVPAMWDPQTSGC 303 (307)
Q Consensus 263 ypGy~G~ll~D~~tGASyN~~G~~GRkfLlpa~wdp~t~~C 303 (307)
|+--.++||+|++||--|=+- . -|.=.+-.++||+|.+-
T Consensus 3 ~~~tqrKvL~DP~SG~Yy~vd-~-P~Qp~~k~lfDPETGqY 41 (75)
T PF15232_consen 3 YPATQRKVLQDPESGQYYVVD-A-PVQPKTKTLFDPETGQY 41 (75)
T ss_pred CCccCccEeecCCCCCEEEEe-c-CCCcceeeeecCCCCcE
Confidence 556678999999988766652 2 24444556789998753
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=46.25 E-value=14 Score=30.35 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=11.7
Q ss_pred CCCcchhHHHHHHHhhhcccchhhhhhhh
Q 021826 1 MAPIYSFPILFLFCSTLISPTLSTTRKLN 29 (307)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 29 (307)
|+|..++++.+||.+-++..|..++|++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~~ 29 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAARELE 29 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 77554333322222212222222566663
No 4
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=45.34 E-value=13 Score=34.17 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=8.9
Q ss_pred CCceEEEeccCCc
Q 021826 137 PTSINVVLTAKDV 149 (307)
Q Consensus 137 ~~~vylVLTa~DV 149 (307)
..-|.+.|||+||
T Consensus 137 g~~v~~~ltS~DV 149 (217)
T TIGR01432 137 DRPVLFKLQSADT 149 (217)
T ss_pred CCEEEEEEECCch
Confidence 3456777777777
No 5
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.35 E-value=25 Score=32.61 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=11.2
Q ss_pred CCceEEEeccCCcc
Q 021826 137 PTSINVVLTAKDVA 150 (307)
Q Consensus 137 ~~~vylVLTa~DV~ 150 (307)
..-+.+.+||.||-
T Consensus 147 ~~~v~~~~tS~DVi 160 (226)
T MTH00139 147 KSNIRALITAADVL 160 (226)
T ss_pred CCEEEEEEecCccc
Confidence 45678899999984
No 6
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=27.24 E-value=1.1e+02 Score=22.91 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccCCCCCCcccccccCCcccCCCCCCCCce-eeec
Q 021826 219 MIINLATLLANTVTNPFNNGYFQGPPTAPIEAATACTGVFGSGSYPGYPGR-VLVD 273 (307)
Q Consensus 219 Mvi~iA~~LA~~~TNP~~ng~yqg~~~aplEaadaC~giyG~GaypGy~G~-ll~D 273 (307)
+++.++-.-|.+++||-.+.-+.++ -|-.+.=.+..|.++|+=|.++ .++|
T Consensus 3 Lll~f~~iaaw~~~~~~~~~~~~~~----~e~~~~~E~R~G~~GfGlY~~~~~riD 54 (54)
T PF12553_consen 3 LLLVFAAIAAWMARNPDIDEDFFDD----DEETPEPEWREGPAGFGLYDGDEYRID 54 (54)
T ss_pred HHHHHHHHHHHHHhCCcccccccCc----ccccCcHhheecCCCcccccCCccccC
Confidence 5677778888999999765433332 2222335688899889988888 5544
No 7
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.21 E-value=39 Score=31.46 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=11.3
Q ss_pred CCceEEEeccCCcc
Q 021826 137 PTSINVVLTAKDVA 150 (307)
Q Consensus 137 ~~~vylVLTa~DV~ 150 (307)
..-+.+++||.||-
T Consensus 147 ~~~v~~~~tS~DVi 160 (229)
T MTH00038 147 QTPIRVLVSSADVL 160 (229)
T ss_pred CeEEEEEEEECCcc
Confidence 45678899999985
No 8
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.62 E-value=42 Score=31.54 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.5
Q ss_pred CCceEEEeccCCcc
Q 021826 137 PTSINVVLTAKDVA 150 (307)
Q Consensus 137 ~~~vylVLTa~DV~ 150 (307)
..-+.+++||.||-
T Consensus 158 ~~~v~~~~tS~DVi 171 (240)
T MTH00023 158 NTHVRILVTGADVL 171 (240)
T ss_pred CCEEEEEEEcCCcc
Confidence 46688899999984
No 9
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.80 E-value=45 Score=30.93 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=12.7
Q ss_pred CCceEEEeccCCccccccc
Q 021826 137 PTSINVVLTAKDVAVDGFC 155 (307)
Q Consensus 137 ~~~vylVLTa~DV~v~gFC 155 (307)
..-+.+.+||.|| ..+|-
T Consensus 147 ~~~v~~~~tS~DV-iHsf~ 164 (225)
T MTH00168 147 DSKIRVLVTSADV-LHSWT 164 (225)
T ss_pred CCEEEEEEEeCCh-hhccc
Confidence 4567889999998 43443
No 10
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.26 E-value=49 Score=30.83 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=13.4
Q ss_pred CCceEEEeccCCcccccccc
Q 021826 137 PTSINVVLTAKDVAVDGFCM 156 (307)
Q Consensus 137 ~~~vylVLTa~DV~v~gFC~ 156 (307)
..-+.+.+||+|| +++|.-
T Consensus 147 ~~~v~~~~tS~DV-iHsf~v 165 (227)
T MTH00154 147 NTQIRILITAADV-IHSWTV 165 (227)
T ss_pred CCEEEEEEEcCch-hhheec
Confidence 4567889999999 444433
No 11
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=20.30 E-value=63 Score=30.12 Aligned_cols=14 Identities=50% Similarity=0.610 Sum_probs=11.9
Q ss_pred CCceEEEeccCCcc
Q 021826 137 PTSINVVLTAKDVA 150 (307)
Q Consensus 137 ~~~vylVLTa~DV~ 150 (307)
..-+.+.+||+||.
T Consensus 147 ~~~v~~~~tS~DVi 160 (228)
T MTH00008 147 QTEIRVLVTAADVI 160 (228)
T ss_pred CCEEEEEEEeCCcc
Confidence 46788999999996
No 12
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.28 E-value=64 Score=30.96 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=11.0
Q ss_pred CCceEEEeccCCcc
Q 021826 137 PTSINVVLTAKDVA 150 (307)
Q Consensus 137 ~~~vylVLTa~DV~ 150 (307)
..-+.+++||+||-
T Consensus 181 ~~~v~~~ltS~DVi 194 (262)
T MTH00027 181 DTNVRVLITAADVL 194 (262)
T ss_pred CcEEEEEEEcCccc
Confidence 45677899999984
No 13
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=20.22 E-value=56 Score=26.01 Aligned_cols=10 Identities=60% Similarity=0.946 Sum_probs=7.6
Q ss_pred CCCceeeeec
Q 021826 285 INGRKYLVPA 294 (307)
Q Consensus 285 ~~GRkfLlpa 294 (307)
.+|||||||+
T Consensus 45 ~kGr~~lVp~ 54 (74)
T PF11305_consen 45 EKGRRVLVPA 54 (74)
T ss_pred CCCCEEEEEC
Confidence 5678888876
Done!