Query 021826
Match_columns 307
No_of_seqs 112 out of 177
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fft_B Ubiquinol oxidase; elec 34.3 23 0.00079 33.4 3.0 16 133-149 155-170 (315)
2 2b5b_A Defensin; antibiotic; N 29.8 19 0.00063 23.7 1.1 10 184-193 1-10 (36)
3 1cyx_A CYOA; electron transpor 21.5 48 0.0016 29.6 2.5 10 248-257 165-174 (205)
4 1cno_A Cytochrome C552; electr 16.9 79 0.0027 22.4 2.4 21 59-79 65-85 (87)
5 1v54_B Cytochrome C oxidase po 16.0 65 0.0022 28.7 2.1 13 137-149 147-159 (227)
6 3s8i_A Protein DDI1 homolog 1; 15.9 28 0.00096 28.9 -0.3 33 249-283 17-49 (148)
7 1u9d_A Hypothetical protein VC 14.3 1.4E+02 0.0048 24.4 3.5 31 39-73 59-89 (122)
8 2d0s_A Cytochrome C, cytochrom 13.9 77 0.0026 22.0 1.6 18 59-76 61-78 (79)
9 3ph2_B Cytochrome C6; photosyn 13.5 45 0.0015 23.2 0.3 20 59-78 64-83 (86)
10 2gsm_B Cytochrome C oxidase su 12.7 89 0.0031 28.4 2.1 13 137-149 178-190 (262)
No 1
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=34.30 E-value=23 Score=33.38 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=12.4
Q ss_pred CCCCCCceEEEeccCCc
Q 021826 133 TNTLPTSINVVLTAKDV 149 (307)
Q Consensus 133 ~P~~~~~vylVLTa~DV 149 (307)
+|. ..-|.+.+||.||
T Consensus 155 lP~-g~~V~~~lTS~DV 170 (315)
T 1fft_B 155 FPA-NTPVYFKVTSNSV 170 (315)
T ss_dssp CCS-SSEEEEEECBSSS
T ss_pred EeC-CCEEEEEEEeCCc
Confidence 543 4568999999999
No 2
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=29.77 E-value=19 Score=23.73 Aligned_cols=10 Identities=50% Similarity=1.348 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 021826 184 ETQCPGYCAW 193 (307)
Q Consensus 184 ~~qCPg~CAw 193 (307)
|+.|||+|..
T Consensus 1 ekkcpgrctl 10 (36)
T 2b5b_A 1 EKKCPGRCTL 10 (36)
T ss_dssp CCCCSSCSSS
T ss_pred CCCCCcceeE
Confidence 5789999975
No 3
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=21.53 E-value=48 Score=29.57 Aligned_cols=10 Identities=0% Similarity=-0.051 Sum_probs=6.1
Q ss_pred cccccccCCc
Q 021826 248 IEAATACTGV 257 (307)
Q Consensus 248 lEaadaC~gi 257 (307)
-++...|.++
T Consensus 165 ~~i~~~~~~~ 174 (205)
T 1cyx_A 165 ADVINKFMAH 174 (205)
T ss_dssp HHHHTTTC--
T ss_pred HHHHHHhcCc
Confidence 3788888775
No 4
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=16.90 E-value=79 Score=22.39 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=18.0
Q ss_pred eccChhhHHHHHHHHHhcCCC
Q 021826 59 GKFTPIQRSIIVDFIHSLNFN 79 (307)
Q Consensus 59 G~f~p~qksii~DFl~Sls~~ 79 (307)
+..++.|...|.+||.+|...
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~~ 85 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPAA 85 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCTT
T ss_pred hhCCHHHHHHHHHHHHhCCcc
Confidence 468999999999999999753
No 5
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=16.03 E-value=65 Score=28.74 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=11.1
Q ss_pred CCceEEEeccCCc
Q 021826 137 PTSINVVLTAKDV 149 (307)
Q Consensus 137 ~~~vylVLTa~DV 149 (307)
..-|.+.+||+||
T Consensus 147 ~~~Vr~~vtS~DV 159 (227)
T 1v54_B 147 EMTIRMLVSSEDV 159 (227)
T ss_dssp TSCEEEEEEESSS
T ss_pred CCEEEEEEEeCcc
Confidence 4568999999999
No 6
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=15.93 E-value=28 Score=28.88 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=21.5
Q ss_pred ccccccCCcccCCCCCCCCceeeecCCCCcccccc
Q 021826 249 EAATACTGVFGSGSYPGYPGRVLVDKVSGASYNAH 283 (307)
Q Consensus 249 EaadaC~giyG~GaypGy~G~ll~D~~tGASyN~~ 283 (307)
|+-+.+.-+|=++---|.+.+.++| |||++|+-
T Consensus 17 ~~~~~~~~l~v~~~Ing~~v~~LVD--TGAs~s~I 49 (148)
T 3s8i_A 17 RGSGQVTMLYINCKVNGHPLKAFVD--SGAQMTIM 49 (148)
T ss_dssp -----CCCCEEEEEETTEEEEEEEC--TTCSSCEE
T ss_pred eeccccCEEEEEEEECCEEEEEEEe--CCCCcEee
Confidence 5555666666555556778899999 89999874
No 7
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=14.33 E-value=1.4e+02 Score=24.42 Aligned_cols=31 Identities=19% Similarity=0.478 Sum_probs=21.7
Q ss_pred eeecCCceeecceEEEEEEeeccChhhHHHHHHHH
Q 021826 39 LKYHNGALLKGNVTVNLIWYGKFTPIQRSIIVDFI 73 (307)
Q Consensus 39 l~YH~GpvLtg~i~V~lIwYG~f~p~qksii~DFl 73 (307)
-.||+| .+---|++-|.|+ ++.||..+...+
T Consensus 59 ~~i~~G---~~MP~VeV~~fgR-t~EqK~~la~~I 89 (122)
T 1u9d_A 59 QYFAEG---GVYPMVEVLWFGR-EQQTQDQIAQVI 89 (122)
T ss_dssp CCCCTT---CCCCEEEEEESCC-CHHHHHHHHHHH
T ss_pred EEEecC---CCCCEEEEEEcCC-CHHHHHHHHHHH
Confidence 456788 5555788999997 888886544444
No 8
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=13.90 E-value=77 Score=21.97 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=16.4
Q ss_pred eccChhhHHHHHHHHHhc
Q 021826 59 GKFTPIQRSIIVDFIHSL 76 (307)
Q Consensus 59 G~f~p~qksii~DFl~Sl 76 (307)
+..|+.|.+.|.+||.+|
T Consensus 61 ~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 678999999999999987
No 9
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=13.45 E-value=45 Score=23.18 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.2
Q ss_pred eccChhhHHHHHHHHHhcCC
Q 021826 59 GKFTPIQRSIIVDFIHSLNF 78 (307)
Q Consensus 59 G~f~p~qksii~DFl~Sls~ 78 (307)
+..++.|...|.+||.+++.
T Consensus 64 ~~ls~~ei~~l~~yl~~~~~ 83 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLDQAE 83 (86)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhh
Confidence 46889999999999999863
No 10
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=12.69 E-value=89 Score=28.42 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=11.1
Q ss_pred CCceEEEeccCCc
Q 021826 137 PTSINVVLTAKDV 149 (307)
Q Consensus 137 ~~~vylVLTa~DV 149 (307)
..-|.+.+||.||
T Consensus 178 g~~v~~~~tS~DV 190 (262)
T 2gsm_B 178 NKTVVVQVTGADV 190 (262)
T ss_dssp TSEEEEEEEESSS
T ss_pred CCEEEEEEEECcc
Confidence 4568899999999
Done!