Query 021826
Match_columns 307
No_of_seqs 112 out of 177
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021826.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021826hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5e2 f.23.12.1 (E:31-86) Ir 37.6 7 0.00051 26.8 1.8 16 64-79 40-55 (56)
2 d1ppje2 f.23.12.1 (E:1-69) Iro 22.3 21 0.0015 25.2 2.1 16 64-79 50-65 (69)
3 d1nmla2 a.3.1.5 (A:167-326) Di 20.9 32 0.0023 26.9 3.2 19 61-79 118-136 (160)
4 d1v54b1 b.6.1.2 (B:91-227) Cyt 19.1 24 0.0018 27.2 2.1 13 137-149 57-69 (137)
5 d1l6ja5 g.14.1.2 (A:332-390) G 18.6 16 0.0012 24.9 0.8 14 180-196 8-21 (59)
6 d1eb7a2 a.3.1.5 (A:165-323) Di 17.2 43 0.0031 26.0 3.2 20 60-79 119-138 (159)
7 d1iqca2 a.3.1.5 (A:151-308) Di 17.0 40 0.0029 26.2 3.0 20 60-79 116-135 (158)
8 d1eaka5 g.14.1.2 (A:336-393) G 16.6 22 0.0016 24.2 1.0 13 181-196 7-19 (58)
9 d1wvec1 a.3.1.1 (C:602-675) p- 16.4 35 0.0026 22.9 2.2 18 60-77 56-73 (74)
10 d1c53a_ a.3.1.1 (A:) Cytochrom 15.7 27 0.002 23.0 1.4 20 57-76 60-79 (79)
No 1
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.61 E-value=7 Score=26.84 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHhcCCC
Q 021826 64 IQRSIIVDFIHSLNFN 79 (307)
Q Consensus 64 ~qksii~DFl~Sls~~ 79 (307)
.-|++|+|||.+++++
T Consensus 40 ~AKstV~~FlssMSAS 55 (56)
T d3cx5e2 40 GAKSTVETFISSMTAT 55 (56)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhcccc
Confidence 3689999999999974
No 2
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.35 E-value=21 Score=25.20 Aligned_cols=16 Identities=13% Similarity=0.482 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHhcCCC
Q 021826 64 IQRSIIVDFIHSLNFN 79 (307)
Q Consensus 64 ~qksii~DFl~Sls~~ 79 (307)
.-|++|.+|+.+++++
T Consensus 50 ~AK~~V~~fvssmSaS 65 (69)
T d1ppje2 50 AAKNVVSQFVSSMSAS 65 (69)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCcc
Confidence 4689999999999974
No 3
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=20.88 E-value=32 Score=26.89 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=17.4
Q ss_pred cChhhHHHHHHHHHhcCCC
Q 021826 61 FTPIQRSIIVDFIHSLNFN 79 (307)
Q Consensus 61 f~p~qksii~DFl~Sls~~ 79 (307)
.++.|++.|..||+||+..
T Consensus 118 Lt~~e~~~LvaFL~tLtd~ 136 (160)
T d1nmla2 118 LNNDEVKSIVAFLKTLTGN 136 (160)
T ss_dssp CCHHHHHHHHHHHGGGCCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 7889999999999999864
No 4
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.14 E-value=24 Score=27.24 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=10.0
Q ss_pred CCceEEEeccCCc
Q 021826 137 PTSINVVLTAKDV 149 (307)
Q Consensus 137 ~~~vylVLTa~DV 149 (307)
..-|.+.|||.||
T Consensus 57 g~~v~~~ltS~DV 69 (137)
T d1v54b1 57 EMTIRMLVSSEDV 69 (137)
T ss_dssp TSCEEEEEEESSS
T ss_pred cccceeeeccCcc
Confidence 4567788888888
No 5
>d1l6ja5 g.14.1.2 (A:332-390) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.55 E-value=16 Score=24.93 Aligned_cols=14 Identities=43% Similarity=0.902 Sum_probs=10.8
Q ss_pred ecCCCCCCCCCCCCCCC
Q 021826 180 VGNSETQCPGYCAWPFH 196 (307)
Q Consensus 180 VGNs~~qCPg~CAwPF~ 196 (307)
-||+..+| |.+||-
T Consensus 8 GGns~G~~---C~FPF~ 21 (59)
T d1l6ja5 8 GGNSAGEL---CVFPFT 21 (59)
T ss_dssp STTTTTCB---CCSSEE
T ss_pred cCCCCCCc---cCCCEE
Confidence 38887666 999993
No 6
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.23 E-value=43 Score=26.05 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=17.5
Q ss_pred ccChhhHHHHHHHHHhcCCC
Q 021826 60 KFTPIQRSIIVDFIHSLNFN 79 (307)
Q Consensus 60 ~f~p~qksii~DFl~Sls~~ 79 (307)
+.++.|++-|..||+||+..
T Consensus 119 ~Ls~~e~~~LvaFL~sLt~~ 138 (159)
T d1eb7a2 119 QLAPDDVENIVAFLHSLSGK 138 (159)
T ss_dssp CCCHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHhcCCC
Confidence 36789999999999999964
No 7
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=17.03 E-value=40 Score=26.24 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.3
Q ss_pred ccChhhHHHHHHHHHhcCCC
Q 021826 60 KFTPIQRSIIVDFIHSLNFN 79 (307)
Q Consensus 60 ~f~p~qksii~DFl~Sls~~ 79 (307)
+.+..|++-|..||+||+..
T Consensus 116 ~Ls~~E~~~LvaFL~sLt~~ 135 (158)
T d1iqca2 116 EFNKDEVSKIVAFLKTLTGD 135 (158)
T ss_dssp CCCHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHhcCCC
Confidence 37788999999999999864
No 8
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.58 E-value=22 Score=24.15 Aligned_cols=13 Identities=54% Similarity=1.058 Sum_probs=10.2
Q ss_pred cCCCCCCCCCCCCCCC
Q 021826 181 GNSETQCPGYCAWPFH 196 (307)
Q Consensus 181 GNs~~qCPg~CAwPF~ 196 (307)
||+..+| |.+||-
T Consensus 7 Gns~G~~---C~FPF~ 19 (58)
T d1eaka5 7 GNSEGAP---CVFPFT 19 (58)
T ss_dssp TTTTTCC---CCSSEE
T ss_pred CCCCCCc---cCCCEE
Confidence 7886665 999994
No 9
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=16.38 E-value=35 Score=22.87 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=16.1
Q ss_pred ccChhhHHHHHHHHHhcC
Q 021826 60 KFTPIQRSIIVDFIHSLN 77 (307)
Q Consensus 60 ~f~p~qksii~DFl~Sls 77 (307)
..++.|...|.+||+||.
T Consensus 56 ~lsd~ei~~l~~Yi~slp 73 (74)
T d1wvec1 56 YVDDESLTQVAEYLSSLP 73 (74)
T ss_dssp TSCHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhCC
Confidence 578999999999999985
No 10
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=15.72 E-value=27 Score=23.01 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=17.1
Q ss_pred EeeccChhhHHHHHHHHHhc
Q 021826 57 WYGKFTPIQRSIIVDFIHSL 76 (307)
Q Consensus 57 wYG~f~p~qksii~DFl~Sl 76 (307)
|-++.|+.|...|.+||.||
T Consensus 60 ~~~~Lsd~ei~~l~aYi~sL 79 (79)
T d1c53a_ 60 LVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred HHhcCCHHHHHHHHHHHHhC
Confidence 44678999999999999987
Done!