BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021827
         (307 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6C417|RU2A_YARLI U2 small nuclear ribonucleoprotein A' OS=Yarrowia lipolytica
           (strain CLIB 122 / E 150) GN=LEA1 PE=3 SV=1
          Length = 230

 Score = 38.9 bits (89), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 1   MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL 60
           ++DV ++  L  L+L  N I ++  L+ +K L          NL  + L GNPV    + 
Sbjct: 107 INDVKNIAKLETLVLTQNGIATLGALESLKSL---------VNLTAITLDGNPVQHVPRY 157

Query: 61  AKKVKTLLPNLCIFNARPIDRITKNEKD 88
              + ++LP+L + +     R+T+ E+D
Sbjct: 158 RSYMISILPSLRMLD---FQRVTQKERD 182


>sp|Q4R6X9|LRC48_MACFA Leucine-rich repeat-containing protein 48 OS=Macaca fascicularis
           GN=LRRC48 PE=2 SV=1
          Length = 523

 Score = 36.2 bits (82), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 1   MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL 60
           +D + ++V L+ L L +N+I      D M  +  L     F  L  L+L GNP++E +  
Sbjct: 124 IDSLDALVKLQVLSLGNNQI------DNMMNIVYL---RRFQCLRTLSLSGNPISEAEDY 174

Query: 61  AKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRE 118
              +   LP+L   + R ID  TK   +       D   + ++ ++VR+  +R    E
Sbjct: 175 KMFICAYLPDLVYLDFRRIDDHTKELAEAKHQYSIDELKHRENLMQVRLQDERARQEE 232


>sp|Q5XI54|LRC48_RAT Leucine-rich repeat-containing protein 48 OS=Rattus norvegicus
           GN=Lrrc48 PE=2 SV=1
          Length = 523

 Score = 33.1 bits (74), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 6   SVVSLRALILNDNEIVSICKLDQMKELNTLGM----------DSY---FFNLNNLNLQGN 52
           ++V+L  L L+ N I  I  LD +  L  L +            Y   F  L  L+L GN
Sbjct: 107 TLVNLEDLSLSHNRISKIDSLDPLVNLQVLSLGNNQINNMMNIIYLRRFPCLRTLSLSGN 166

Query: 53  PVAEYDKLAKKVKTLLPNLCIFNARPID 80
           PV+E ++    +   LP+L   + R +D
Sbjct: 167 PVSEAEEYKVFIYAYLPDLVYLDFRRVD 194


>sp|Q6AXZ2|LRC46_RAT Leucine-rich repeat-containing protein 46 OS=Rattus norvegicus
           GN=Lrrc46 PE=2 SV=1
          Length = 323

 Score = 32.0 bits (71), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 1   MDDVTSVVSLRALILNDNEIVSICKLDQMKELN----------TLGMDSYFFNLNNLNLQ 50
           ++++  + SLR L L  N+I  +  L  ++ L           TL +D    +L  LNL 
Sbjct: 85  IENLACITSLRFLSLAGNQIRHVENLLDLQYLQFLDLSENLIETLKLDELPQSLLILNLC 144

Query: 51  GNPVAEYDKLAKKVKTLLPNLCIFNARPI 79
           GNP    D   K V   LP L   + +PI
Sbjct: 145 GNPCTNQDGYRKMVIGALPLLLDLDKQPI 173


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.129    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,605,730
Number of Sequences: 539616
Number of extensions: 5587962
Number of successful extensions: 17863
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 640
Number of HSP's that attempted gapping in prelim test: 15785
Number of HSP's gapped (non-prelim): 2007
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)