Query 021827
Match_columns 307
No_of_seqs 122 out of 188
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.7 4.3E-18 9.4E-23 149.2 5.7 90 1-90 34-161 (175)
2 KOG1644 U2-associated snRNP A' 99.3 8.7E-13 1.9E-17 121.4 2.1 89 1-89 57-160 (233)
3 KOG2123 Uncharacterized conser 98.8 6.2E-10 1.3E-14 107.5 -1.2 83 5-87 38-135 (388)
4 PF14580 LRR_9: Leucine-rich r 98.5 5.3E-08 1.1E-12 85.8 3.7 70 4-76 15-95 (175)
5 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5.1E-12 66.4 3.8 47 8-54 1-61 (61)
6 KOG1259 Nischarin, modulator o 98.3 1.7E-07 3.7E-12 92.0 0.7 62 7-68 306-425 (490)
7 KOG0531 Protein phosphatase 1, 98.2 5.9E-07 1.3E-11 86.0 1.4 79 3-81 90-179 (414)
8 KOG2739 Leucine-rich acidic nu 98.2 8.7E-07 1.9E-11 83.6 2.3 83 5-87 62-161 (260)
9 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.6E-11 60.1 3.5 40 8-59 1-41 (44)
10 KOG1644 U2-associated snRNP A' 98.0 4.2E-06 9.2E-11 77.8 3.6 66 8-75 42-119 (233)
11 KOG3763 mRNA export factor TAP 97.9 6.2E-06 1.3E-10 84.8 2.5 80 5-84 215-316 (585)
12 KOG0531 Protein phosphatase 1, 97.7 1.1E-05 2.4E-10 77.3 0.7 60 1-60 110-180 (414)
13 KOG3665 ZYG-1-like serine/thre 97.4 9E-05 2E-09 77.7 3.1 74 5-78 170-259 (699)
14 KOG1859 Leucine-rich repeat pr 97.4 1.6E-05 3.4E-10 84.9 -2.5 77 10-86 234-328 (1096)
15 PLN03150 hypothetical protein; 97.2 0.00039 8.4E-09 71.2 5.3 52 4-55 438-503 (623)
16 PLN00113 leucine-rich repeat r 97.2 0.00051 1.1E-08 71.4 6.2 15 41-55 163-177 (968)
17 PLN00113 leucine-rich repeat r 97.2 0.00043 9.4E-09 71.9 5.2 70 4-76 495-578 (968)
18 cd00116 LRR_RI Leucine-rich re 97.2 0.00034 7.3E-09 62.0 3.7 70 8-77 137-229 (319)
19 cd00116 LRR_RI Leucine-rich re 97.0 0.00058 1.3E-08 60.6 3.6 72 5-76 162-257 (319)
20 KOG4194 Membrane glycoprotein 96.9 0.00014 3E-09 76.4 -1.1 66 7-75 340-422 (873)
21 KOG0444 Cytoskeletal regulator 96.9 0.00022 4.8E-09 75.8 -0.4 77 3-85 121-210 (1255)
22 KOG2982 Uncharacterized conser 96.8 0.00057 1.2E-08 67.5 2.0 48 40-87 247-297 (418)
23 smart00365 LRR_SD22 Leucine-ri 96.8 0.00074 1.6E-08 43.7 1.8 22 7-28 1-22 (26)
24 KOG4194 Membrane glycoprotein 96.8 0.00056 1.2E-08 72.1 1.8 73 3-78 144-230 (873)
25 PF13855 LRR_8: Leucine rich r 96.7 0.0014 3E-08 46.9 2.5 37 3-39 20-58 (61)
26 KOG3207 Beta-tubulin folding c 96.5 0.00057 1.2E-08 69.5 -0.6 46 42-87 326-372 (505)
27 PRK15387 E3 ubiquitin-protein 96.4 0.0033 7.1E-08 67.2 4.5 29 9-39 223-251 (788)
28 KOG0618 Serine/threonine phosp 96.4 0.00057 1.2E-08 74.3 -1.2 36 4-39 379-416 (1081)
29 COG4886 Leucine-rich repeat (L 96.4 0.0017 3.6E-08 60.8 2.0 53 7-59 115-180 (394)
30 PLN03150 hypothetical protein; 96.3 0.005 1.1E-07 63.2 5.0 66 9-77 419-498 (623)
31 KOG4237 Extracellular matrix p 95.9 0.003 6.5E-08 64.0 1.2 51 5-55 271-335 (498)
32 KOG3207 Beta-tubulin folding c 95.9 0.0023 5.1E-08 65.2 0.4 71 4-76 142-229 (505)
33 PLN03210 Resistant to P. syrin 95.9 0.01 2.2E-07 64.8 5.2 50 4-53 630-692 (1153)
34 PF12799 LRR_4: Leucine Rich r 95.9 0.004 8.6E-08 43.6 1.4 24 4-27 20-43 (44)
35 KOG0617 Ras suppressor protein 95.9 0.0019 4.2E-08 60.2 -0.4 54 4-57 52-117 (264)
36 COG4886 Leucine-rich repeat (L 95.8 0.0044 9.5E-08 58.0 1.7 51 9-59 141-203 (394)
37 KOG0472 Leucine-rich repeat pr 95.8 0.005 1.1E-07 62.9 2.1 31 26-56 501-542 (565)
38 PRK15387 E3 ubiquitin-protein 95.8 0.0081 1.7E-07 64.3 3.8 47 9-57 403-460 (788)
39 KOG0618 Serine/threonine phosp 95.7 0.0045 9.8E-08 67.6 1.6 53 3-55 425-489 (1081)
40 KOG0444 Cytoskeletal regulator 95.7 0.0017 3.7E-08 69.3 -1.7 57 3-59 50-143 (1255)
41 PLN03210 Resistant to P. syrin 95.6 0.019 4.1E-07 62.7 6.0 68 4-75 798-875 (1153)
42 KOG0617 Ras suppressor protein 95.5 0.002 4.4E-08 60.1 -1.5 73 3-79 28-112 (264)
43 KOG4237 Extracellular matrix p 95.3 0.0065 1.4E-07 61.7 0.9 53 5-57 295-361 (498)
44 KOG1259 Nischarin, modulator o 95.1 0.0091 2E-07 59.5 1.4 56 7-62 283-349 (490)
45 KOG4579 Leucine-rich repeat (L 95.1 0.0038 8.3E-08 56.2 -1.3 68 4-75 49-129 (177)
46 PRK15370 E3 ubiquitin-protein 95.0 0.026 5.6E-07 60.1 4.3 30 9-39 200-229 (754)
47 smart00446 LRRcap occurring C- 94.8 0.021 4.5E-07 37.4 2.0 22 58-79 2-23 (26)
48 KOG1859 Leucine-rich repeat pr 94.1 0.0081 1.8E-07 64.9 -1.6 36 4-39 183-218 (1096)
49 smart00369 LRR_TYP Leucine-ric 94.1 0.031 6.7E-07 34.5 1.6 19 7-25 1-19 (26)
50 smart00370 LRR Leucine-rich re 94.1 0.031 6.7E-07 34.5 1.6 19 7-25 1-19 (26)
51 PRK15370 E3 ubiquitin-protein 94.1 0.028 6.2E-07 59.8 2.2 49 8-58 325-383 (754)
52 PF13504 LRR_7: Leucine rich r 93.6 0.039 8.4E-07 32.1 1.2 17 8-24 1-17 (17)
53 PF00560 LRR_1: Leucine Rich R 93.4 0.047 1E-06 33.1 1.4 17 9-25 1-17 (22)
54 KOG1909 Ran GTPase-activating 93.2 0.038 8.3E-07 55.1 1.2 71 5-75 210-304 (382)
55 KOG2739 Leucine-rich acidic nu 92.7 0.04 8.6E-07 52.6 0.5 35 5-39 88-125 (260)
56 KOG3864 Uncharacterized conser 92.6 0.045 9.7E-07 51.3 0.8 35 40-74 174-209 (221)
57 KOG4658 Apoptotic ATPase [Sign 92.5 0.05 1.1E-06 59.0 1.1 35 4-38 591-626 (889)
58 KOG3665 ZYG-1-like serine/thre 92.3 0.056 1.2E-06 57.2 1.1 74 2-77 189-283 (699)
59 KOG0472 Leucine-rich repeat pr 91.8 0.037 8E-07 56.8 -0.9 17 286-302 489-505 (565)
60 KOG0532 Leucine-rich repeat (L 89.5 0.16 3.5E-06 53.9 1.3 20 40-59 232-251 (722)
61 KOG2982 Uncharacterized conser 88.7 0.15 3.2E-06 50.9 0.4 29 10-38 73-105 (418)
62 KOG4658 Apoptotic ATPase [Sign 86.9 0.51 1.1E-05 51.5 3.1 53 7-59 544-612 (889)
63 KOG4579 Leucine-rich repeat (L 86.7 0.13 2.8E-06 46.6 -1.2 73 9-85 28-118 (177)
64 KOG1909 Ran GTPase-activating 86.5 0.47 1E-05 47.6 2.4 83 4-87 181-287 (382)
65 PRK15386 type III secretion pr 86.4 0.53 1.1E-05 47.8 2.8 48 4-53 48-105 (426)
66 KOG3864 Uncharacterized conser 86.0 0.3 6.6E-06 45.9 0.8 65 10-76 103-183 (221)
67 KOG1947 Leucine rich repeat pr 86.0 0.6 1.3E-05 43.5 2.7 72 6-78 212-304 (482)
68 KOG2123 Uncharacterized conser 85.2 0.082 1.8E-06 52.3 -3.4 71 7-79 18-100 (388)
69 KOG0532 Leucine-rich repeat (L 84.8 0.078 1.7E-06 56.2 -4.1 53 4-57 94-158 (722)
70 PF13504 LRR_7: Leucine rich r 82.9 0.9 1.9E-05 26.4 1.6 16 42-57 1-16 (17)
71 smart00369 LRR_TYP Leucine-ric 81.2 1.2 2.7E-05 27.2 1.9 19 41-59 1-19 (26)
72 smart00370 LRR Leucine-rich re 81.2 1.2 2.7E-05 27.2 1.9 19 41-59 1-19 (26)
73 PF13516 LRR_6: Leucine Rich r 81.0 0.89 1.9E-05 27.5 1.1 14 8-21 2-15 (24)
74 smart00364 LRR_BAC Leucine-ric 79.0 1.1 2.4E-05 29.4 1.1 21 8-28 2-22 (26)
75 KOG1947 Leucine rich repeat pr 72.4 2.5 5.4E-05 39.5 2.1 70 5-75 240-327 (482)
76 PF13306 LRR_5: Leucine rich r 72.0 6 0.00013 30.7 3.9 67 5-76 9-88 (129)
77 PF13306 LRR_5: Leucine rich r 70.3 4.6 0.0001 31.4 2.9 51 5-57 32-95 (129)
78 COG5238 RNA1 Ran GTPase-activa 68.9 1.9 4.1E-05 43.0 0.5 56 2-57 24-107 (388)
79 smart00368 LRR_RI Leucine rich 66.1 3.8 8.3E-05 26.1 1.4 14 43-56 3-16 (28)
80 COG5238 RNA1 Ran GTPase-activa 64.9 9 0.00019 38.4 4.3 35 42-76 185-221 (388)
81 smart00365 LRR_SD22 Leucine-ri 64.4 5.3 0.00011 25.9 1.8 19 41-59 1-19 (26)
82 KOG0473 Leucine-rich repeat pr 59.2 0.61 1.3E-05 45.5 -4.7 49 6-54 63-123 (326)
83 KOG2120 SCF ubiquitin ligase, 57.7 6.6 0.00014 39.7 2.0 65 6-73 311-391 (419)
84 PRK15386 type III secretion pr 54.4 13 0.00029 38.0 3.6 44 9-54 73-124 (426)
85 TIGR00864 PCC polycystin catio 53.2 9.7 0.00021 46.7 2.7 40 14-65 1-45 (2740)
86 KOG2120 SCF ubiquitin ligase, 44.9 5.9 0.00013 40.1 -0.6 33 6-38 208-242 (419)
87 KOG4308 LRR-containing protein 31.4 7.4 0.00016 39.7 -2.3 29 42-72 262-290 (478)
88 KOG3763 mRNA export factor TAP 29.6 20 0.00044 38.1 0.4 32 8-39 244-279 (585)
89 smart00367 LRR_CC Leucine-rich 25.7 43 0.00093 20.6 1.2 18 41-58 1-18 (26)
90 KOG0473 Leucine-rich repeat pr 21.2 3.9 8.4E-05 40.1 -6.1 53 3-55 37-101 (326)
91 COG1949 Orn Oligoribonuclease 21.1 35 0.00077 31.6 0.3 41 42-86 98-139 (184)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.72 E-value=4.3e-18 Score=149.19 Aligned_cols=90 Identities=24% Similarity=0.412 Sum_probs=48.3
Q ss_pred Ccccc-ccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------------------------------CCC
Q 021827 1 MDDVT-SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------------------------------YFF 42 (307)
Q Consensus 1 IDeL~-~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------------------------------~L~ 42 (307)
|+++. .|.+|+.|+||+|+|++|++|+.|+.|++|+|++ .|+
T Consensus 34 Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 34 IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP 113 (175)
T ss_dssp --S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence 34555 4566777777777777777777777777777664 789
Q ss_pred CCceEEccCCCccCccchHHHHHHhCCCCceecCcccChhhhhhhccc
Q 021827 43 NLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNI 90 (307)
Q Consensus 43 nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDarpV~e~tRe~a~~r 90 (307)
+|++|+|.||||++.+.||.+|+..||+|++||+.+|.+++|.+|...
T Consensus 114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~ 161 (175)
T PF14580_consen 114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKL 161 (175)
T ss_dssp T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B-------
T ss_pred CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhcccccc
Confidence 999999999999999999999999999999999999999999998543
No 2
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.29 E-value=8.7e-13 Score=121.43 Aligned_cols=89 Identities=29% Similarity=0.418 Sum_probs=79.8
Q ss_pred CccccccccCCeeeccCcccccccC-CCC-CCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHH
Q 021827 1 MDDVTSVVSLRALILNDNEIVSICK-LDQ-MKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVK 65 (307)
Q Consensus 1 IDeL~~L~nL~aL~LS~N~IssIeg-Le~-L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~ 65 (307)
++++..+..|.+|.|++|+|++|.+ |++ +++|.+|.|++ .||.|++|.|-|||++...+||.||+
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 3567778889999999999999988 555 56799999987 88999999999999999999999999
Q ss_pred HhCCCCceecCcccChhhhhhhcc
Q 021827 66 TLLPNLCIFNARPIDRITKNEKDN 89 (307)
Q Consensus 66 a~LP~L~yLDarpV~e~tRe~a~~ 89 (307)
..||+|+.|||..|...+|++|-.
T Consensus 137 ~klp~l~~LDF~kVt~~ER~~A~~ 160 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVTRKEREEAEV 160 (233)
T ss_pred EecCcceEeehhhhhHHHHHHHHH
Confidence 999999999999999999999943
No 3
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=6.2e-10 Score=107.50 Aligned_cols=83 Identities=27% Similarity=0.341 Sum_probs=77.8
Q ss_pred cccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCc--cchHHHHHHhCC
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEY--DKLAKKVKTLLP 69 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~--e~YrrKI~a~LP 69 (307)
..+..|+.|.||=|.|+++.-|..|++|..|+|.. .||+|++|-|..||||-. .+||+.|+..||
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 56788999999999999999999999999999985 889999999999999864 899999999999
Q ss_pred CCceecCcccChhhhhhh
Q 021827 70 NLCIFNARPIDRITKNEK 87 (307)
Q Consensus 70 ~L~yLDarpV~e~tRe~a 87 (307)
+|+.||..+|.+++=+.|
T Consensus 118 nLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 118 NLKKLDNVPVTEEELEEA 135 (388)
T ss_pred cchhccCccccHHHHHHH
Confidence 999999999999998888
No 4
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=5.3e-08 Score=85.85 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=23.8
Q ss_pred ccccccCCeeeccCcccccccCCC-CCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 4 VTSVVSLRALILNDNEIVSICKLD-QMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe-~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
+.++..+++|+|.+|+|+.|++|+ .|.+|++|+||+ .|++|++|+|.+|.|+.... .+...||+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~---~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE---GLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH---HHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc---chHHhCCcCC
Confidence 344556999999999999999999 699999999997 77999999999999998754 3445789999
Q ss_pred eecC
Q 021827 73 IFNA 76 (307)
Q Consensus 73 yLDa 76 (307)
.|.-
T Consensus 92 ~L~L 95 (175)
T PF14580_consen 92 ELYL 95 (175)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 8873
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.3e-07 Score=66.45 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=43.2
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCc
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPV 54 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPI 54 (307)
++|+.|+|++|+|+.|+. +..|++|++|+|++ .|++|++|+|.+|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 479999999999999995 89999999999996 789999999999986
No 6
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=1.7e-07 Score=92.00 Aligned_cols=62 Identities=31% Similarity=0.432 Sum_probs=53.4
Q ss_pred cccCCeeeccCcccccccCCCCCCCCCeEeccc-----------------------------------------------
Q 021827 7 VVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------------------------------------------- 39 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------------------------------------------- 39 (307)
++.++.|+||+|+|..|.+|..|.+|+.||||.
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccc
Confidence 366788888888888888888888888888873
Q ss_pred -----------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 40 -----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 40 -----------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
.||+|.+|.|.+||++...+||-+|++.+
T Consensus 386 Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~F 425 (490)
T KOG1259|consen 386 IEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARF 425 (490)
T ss_pred hhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHH
Confidence 88999999999999999999999999865
No 7
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=5.9e-07 Score=85.96 Aligned_cols=79 Identities=28% Similarity=0.325 Sum_probs=64.9
Q ss_pred cccccccCCeeeccCcccccccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
.|..+++|.+|+|.+|+|+.|++ ++.|++|.+|+||. .|+.|+.|+|.||+|+....|......-++.|
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 38899999999999999999999 99999999999997 77889999999999999999876444444554
Q ss_pred ceecCcccCh
Q 021827 72 CIFNARPIDR 81 (307)
Q Consensus 72 ~yLDarpV~e 81 (307)
.|.....+..
T Consensus 170 ~~n~i~~ie~ 179 (414)
T KOG0531|consen 170 SYNRIVDIEN 179 (414)
T ss_pred Ccchhhhhhh
Confidence 4444444444
No 8
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.16 E-value=8.7e-07 Score=83.61 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=61.8
Q ss_pred cccccCCeeeccCcccccccC----CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHh
Q 021827 5 TSVVSLRALILNDNEIVSICK----LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL 67 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg----Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~ 67 (307)
-.|++|++|.||+|...-..+ ...+++|++|.||. .|+||.+|.|..|++....+||.+|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 345666777777773332222 33446667777664 6678888888888888999999999999
Q ss_pred CCCCceecCcccChhhhhhh
Q 021827 68 LPNLCIFNARPIDRITKNEK 87 (307)
Q Consensus 68 LP~L~yLDarpV~e~tRe~a 87 (307)
||+|+|||..-|...+...+
T Consensus 142 l~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 142 LPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred hhhhccccccccCCcccccc
Confidence 99999999999988777666
No 9
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.1e-06 Score=60.10 Aligned_cols=40 Identities=33% Similarity=0.528 Sum_probs=30.7
Q ss_pred ccCCeeeccCcccccccC-CCCCCCCCeEecccCCCCCceEEccCCCccCccc
Q 021827 8 VSLRALILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~~L~nLrtLnLeGNPIak~e~ 59 (307)
++|++|+|++|+|+.|+. |.+| ++|++|+|.+|+|.+.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l------------~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNL------------PNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTC------------TTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCC------------CCCCEEEecCCCCCCCcC
Confidence 589999999999999997 6665 566788888888887654
No 10
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=4.2e-06 Score=77.79 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=58.7
Q ss_pred ccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827 8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 75 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD 75 (307)
.+..+++|++|.|..+.+|+.+.+|.||.|++ .+++|.+|+|.+|-|+...+. --.+.||+|+||-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL--DPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc--chhccCCccceee
Confidence 46889999999999999999999999999997 779999999999999988763 4457889998875
No 11
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=97.88 E-value=6.2e-06 Score=84.76 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=67.7
Q ss_pred cccccCCeeeccCcccccccCCCCC----CCCCeEeccc--------------CCCCCceEEccCCCccCc----cchHH
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQM----KELNTLGMDS--------------YFFNLNNLNLQGNPVAEY----DKLAK 62 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L----~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~----e~Yrr 62 (307)
.+...+..|.|++|+|-.|+.+..| ++|.+|+||+ ....|+.|-|.|||||.. ..|.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3556788899999999999997765 6899999997 446689999999999875 66777
Q ss_pred HHHHhCCCCceecCcccChhhh
Q 021827 63 KVKTLLPNLCIFNARPIDRITK 84 (307)
Q Consensus 63 KI~a~LP~L~yLDarpV~e~tR 84 (307)
.|+..+|+|..||+.-|.....
T Consensus 295 ~i~~~FPKL~~LDG~ev~~~~~ 316 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQPEVI 316 (585)
T ss_pred HHHHhcchheeecCcccCcccc
Confidence 9999999999999998877553
No 12
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=1.1e-05 Score=77.27 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=53.9
Q ss_pred Ccc-ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccch
Q 021827 1 MDD-VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKL 60 (307)
Q Consensus 1 IDe-L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~Y 60 (307)
|.+ +.+|++|+.|+||+|.|++|++|..|+.|..|+|++ .|++|+.|+|.+|.|...+.+
T Consensus 110 i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~ 180 (414)
T KOG0531|consen 110 IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEND 180 (414)
T ss_pred cccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhh
Confidence 455 778999999999999999999999999999999997 578999999999999887774
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=9e-05 Score=77.66 Aligned_cols=74 Identities=20% Similarity=0.379 Sum_probs=64.3
Q ss_pred cccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccch-HHHHH--HhC
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKL-AKKVK--TLL 68 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~Y-rrKI~--a~L 68 (307)
.+++||..|++|+-+|+.|.|++.|+||++|.+-+ .|++|++|+++.......... ++|+- ..|
T Consensus 170 ~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred hccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 57899999999999999999999999999999987 889999999999998776632 33433 579
Q ss_pred CCCceecCcc
Q 021827 69 PNLCIFNARP 78 (307)
Q Consensus 69 P~L~yLDarp 78 (307)
|.|++||+..
T Consensus 250 peLrfLDcSg 259 (699)
T KOG3665|consen 250 PELRFLDCSG 259 (699)
T ss_pred ccccEEecCC
Confidence 9999999873
No 14
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=1.6e-05 Score=84.86 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=63.5
Q ss_pred CCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHh-----CCCC
Q 021827 10 LRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL-----LPNL 71 (307)
Q Consensus 10 L~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~-----LP~L 71 (307)
|..|+|++|.++++-|+++|.+|..||||. .|..|+.|||+|||++-.+.||.-+..+ +|.=
T Consensus 234 L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~ 313 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVK 313 (1096)
T ss_pred heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcc
Confidence 777888888888999999999999999995 5678999999999999999999877754 4566
Q ss_pred ceecCcccChhhhhh
Q 021827 72 CIFNARPIDRITKNE 86 (307)
Q Consensus 72 ~yLDarpV~e~tRe~ 86 (307)
-.||++-+.-.+.-.
T Consensus 314 f~LDgk~l~~~efwk 328 (1096)
T KOG1859|consen 314 FKLDGKALGGREFWK 328 (1096)
T ss_pred eEecceeccchhhhh
Confidence 678888776655433
No 15
>PLN03150 hypothetical protein; Provisional
Probab=97.24 E-value=0.00039 Score=71.19 Aligned_cols=52 Identities=27% Similarity=0.432 Sum_probs=39.0
Q ss_pred ccccccCCeeeccCcccc-cccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCcc
Q 021827 4 VTSVVSLRALILNDNEIV-SICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVA 55 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Is-sIeg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIa 55 (307)
|..|.+|+.|+|++|.|+ .|+. +..|++|++|+|++ .|++|+.|+|.+|.+.
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 456777888888888886 5553 77778888888875 6677888888888776
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.23 E-value=0.00051 Score=71.39 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=7.3
Q ss_pred CCCCceEEccCCCcc
Q 021827 41 FFNLNNLNLQGNPVA 55 (307)
Q Consensus 41 L~nLrtLnLeGNPIa 55 (307)
|++|++|+|.+|.+.
T Consensus 163 l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 163 FSSLKVLDLGGNVLV 177 (968)
T ss_pred CCCCCEEECccCccc
Confidence 344555555555443
No 17
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.20 E-value=0.00043 Score=71.90 Aligned_cols=70 Identities=24% Similarity=0.250 Sum_probs=45.8
Q ss_pred ccccccCCeeeccCccccc-cc-CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVS-IC-KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Iss-Ie-gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|+|+. ++ .+..|++|++|+|++ .|++|++|+|.+|++...-. ..+..++
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~ 571 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP---KNLGNVE 571 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC---hhHhcCc
Confidence 4556777777777777763 32 366777778888775 56778888888888764322 2334466
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
.|++||-
T Consensus 572 ~L~~l~l 578 (968)
T PLN00113 572 SLVQVNI 578 (968)
T ss_pred ccCEEec
Confidence 6766663
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.19 E-value=0.00034 Score=62.03 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=34.8
Q ss_pred ccCCeeeccCcccc-----ccc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCcc-chHHHH
Q 021827 8 VSLRALILNDNEIV-----SIC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYD-KLAKKV 64 (307)
Q Consensus 8 ~nL~aL~LS~N~Is-----sIe-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e-~YrrKI 64 (307)
.+|+.|+|++|.|+ .+. .+..+.+|++|+|+. .+++|+.|+|.+|++.... .+....
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 55666666666655 111 244445556666553 2235666666666655321 222233
Q ss_pred HHhCCCCceecCc
Q 021827 65 KTLLPNLCIFNAR 77 (307)
Q Consensus 65 ~a~LP~L~yLDar 77 (307)
...+|+|++||-.
T Consensus 217 ~~~~~~L~~L~ls 229 (319)
T cd00116 217 LASLKSLEVLNLG 229 (319)
T ss_pred hcccCCCCEEecC
Confidence 3344556665543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.02 E-value=0.00058 Score=60.55 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=44.9
Q ss_pred cccccCCeeeccCccccc-----c-cCCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccch--
Q 021827 5 TSVVSLRALILNDNEIVS-----I-CKLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKL-- 60 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~Iss-----I-egLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~Y-- 60 (307)
..+..|+.|+|++|.|+. + ..+..+++|+.|+|++ .+++|+.|+|.+|++....-+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 445678888888888772 2 2345566888888875 567788888888887753221
Q ss_pred HHHHHHhCCCCceecC
Q 021827 61 AKKVKTLLPNLCIFNA 76 (307)
Q Consensus 61 rrKI~a~LP~L~yLDa 76 (307)
...+....++|++|+.
T Consensus 242 ~~~~~~~~~~L~~L~l 257 (319)
T cd00116 242 ASALLSPNISLLTLSL 257 (319)
T ss_pred HHHHhccCCCceEEEc
Confidence 1111112367777764
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.95 E-value=0.00014 Score=76.45 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=36.9
Q ss_pred cccCCeeeccCcccccccC--CCCCCCCCeEeccc---------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS---------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~---------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
|..|++|+|++|.|..|.. +..|.+|.+|+|++ .|+.|+.|.|.||.+-..+. +-+.-||
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k---rAfsgl~ 416 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK---RAFSGLE 416 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch---hhhccCc
Confidence 3444455555555554443 44455555555553 55666666666666666554 4455566
Q ss_pred CCceec
Q 021827 70 NLCIFN 75 (307)
Q Consensus 70 ~L~yLD 75 (307)
.|..||
T Consensus 417 ~LE~Ld 422 (873)
T KOG4194|consen 417 ALEHLD 422 (873)
T ss_pred ccceec
Confidence 666666
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.87 E-value=0.00022 Score=75.80 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+|+.-.|+-.|+||+|+|.+|++ +-+|+.|-.||||+ +|.+|++|.|++||+.- +-+..||
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h------fQLrQLP 194 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH------FQLRQLP 194 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH------HHHhcCc
Confidence 34455667778888888888888 67788888888887 88999999999999853 3345677
Q ss_pred CCceecCcccChhhhh
Q 021827 70 NLCIFNARPIDRITKN 85 (307)
Q Consensus 70 ~L~yLDarpV~e~tRe 85 (307)
.++.|..--.+...|.
T Consensus 195 smtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRT 210 (1255)
T ss_pred cchhhhhhhcccccch
Confidence 7777664444444443
No 22
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.00057 Score=67.47 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=37.8
Q ss_pred CCCCCceEEccCCCccCc-c-chHHHH-HHhCCCCceecCcccChhhhhhh
Q 021827 40 YFFNLNNLNLQGNPVAEY-D-KLAKKV-KTLLPNLCIFNARPIDRITKNEK 87 (307)
Q Consensus 40 ~L~nLrtLnLeGNPIak~-e-~YrrKI-~a~LP~L~yLDarpV~e~tRe~a 87 (307)
+|+.|+.|.+..||+.+. . .-|+++ ++.||+++.|++.-|...+|+.-
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dS 297 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDS 297 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhh
Confidence 889999999999999764 1 224444 48999999999999988877654
No 23
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=96.81 E-value=0.00074 Score=43.71 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.4
Q ss_pred cccCCeeeccCcccccccCCCC
Q 021827 7 VVSLRALILNDNEIVSICKLDQ 28 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIegLe~ 28 (307)
|++|+.|+|++|.|+.|+||+.
T Consensus 1 L~~L~~L~L~~NkI~~IEnL~~ 22 (26)
T smart00365 1 LTNLEELDLSQNKIKKIENLDE 22 (26)
T ss_pred CCccCEEECCCCccceecCccc
Confidence 6899999999999999999984
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.79 E-value=0.00056 Score=72.07 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=55.7
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
+|..|..|+.|+||-|.|+.|+. ++.=.+|..|+|++ .|.+|-+|-|..|-++..+. ++.+.|
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~---r~Fk~L 220 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ---RSFKRL 220 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH---HHhhhc
Confidence 45566777777777777777776 66666777777775 56778888888888888776 788899
Q ss_pred CCCceecCcc
Q 021827 69 PNLCIFNARP 78 (307)
Q Consensus 69 P~L~yLDarp 78 (307)
|+|+.||-.+
T Consensus 221 ~~L~~LdLnr 230 (873)
T KOG4194|consen 221 PKLESLDLNR 230 (873)
T ss_pred chhhhhhccc
Confidence 9999998653
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.65 E-value=0.0014 Score=46.86 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.0
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS 39 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~ 39 (307)
-+..|++|+.|+|++|.|+.|+. +..|++|++|+|++
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 35678999999999999999986 89999999999985
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00057 Score=69.49 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=24.7
Q ss_pred CCCceEEccCCCccCccchHH-HHHHhCCCCceecCcccChhhhhhh
Q 021827 42 FNLNNLNLQGNPVAEYDKLAK-KVKTLLPNLCIFNARPIDRITKNEK 87 (307)
Q Consensus 42 ~nLrtLnLeGNPIak~e~Yrr-KI~a~LP~L~yLDarpV~e~tRe~a 87 (307)
++|+.|+.-+||+...++-.+ -|++.+|+|..|+.--|.+.+|-.|
T Consensus 326 ~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~A 372 (505)
T KOG3207|consen 326 ENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDA 372 (505)
T ss_pred chhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhh
Confidence 444444444444444333222 2346667777777777777776655
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.41 E-value=0.0033 Score=67.24 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=14.5
Q ss_pred cCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827 9 SLRALILNDNEIVSICKLDQMKELNTLGMDS 39 (307)
Q Consensus 9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~ 39 (307)
+|+.|+|++|+|+.|+.+ +++|++|+|++
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~ 251 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSG 251 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecC
Confidence 345555555555555433 34455555553
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.41 E-value=0.00057 Score=74.30 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=28.2
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS 39 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~ 39 (307)
|.+...|+.|+|++|+|.+++- +..|..|+.|+||.
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence 3456778888888888888776 77778888888885
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.40 E-value=0.0017 Score=60.77 Aligned_cols=53 Identities=30% Similarity=0.408 Sum_probs=28.1
Q ss_pred cccCCeeeccCcccccccCCCCCC--CCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827 7 VVSLRALILNDNEIVSICKLDQMK--ELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIegLe~L~--nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~ 59 (307)
++.|..|+|.+|.|+.|..+..+. +|+.|++++ .+++|+.|+|..|+++..+.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhh
Confidence 344555555555555555544443 555555554 44555555555555555544
No 30
>PLN03150 hypothetical protein; Provisional
Probab=96.31 E-value=0.005 Score=63.22 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=52.6
Q ss_pred cCCeeeccCcccc-cccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827 9 SLRALILNDNEIV-SICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF 74 (307)
Q Consensus 9 nL~aL~LS~N~Is-sIeg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL 74 (307)
.+..|+|++|.|+ .|+. +..|++|+.|+|++ .|++|++|+|.+|.+..... .....|++|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP---~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP---ESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc---hHHhcCCCCCEE
Confidence 3789999999997 3333 77899999999996 77899999999999985422 234578999999
Q ss_pred cCc
Q 021827 75 NAR 77 (307)
Q Consensus 75 Dar 77 (307)
|..
T Consensus 496 ~Ls 498 (623)
T PLN03150 496 NLN 498 (623)
T ss_pred ECc
Confidence 853
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.92 E-value=0.003 Score=64.04 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=32.0
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCcc
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVA 55 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIa 55 (307)
..|++|+.|+|++|.|+.|+. ++.+..|+.|+|.. .+..|++|+|.||.|+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 457777777777777777765 66666666666653 4455555555555443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0023 Score=65.17 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=49.7
Q ss_pred ccccccCCeeeccCcccccccC----CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHH
Q 021827 4 VTSVVSLRALILNDNEIVSICK----LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKT 66 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg----Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a 66 (307)
+..|++++.|+||.|-|..+.- +++|++|+.|.||+ .++.|++|.|.++-++..+ ..++.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~--V~~~~~ 219 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD--VQWILL 219 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHH--HHHHHH
Confidence 3568888888888888874433 67888888888885 4566777777777776332 356667
Q ss_pred hCCCCceecC
Q 021827 67 LLPNLCIFNA 76 (307)
Q Consensus 67 ~LP~L~yLDa 76 (307)
.+|+|..|+.
T Consensus 220 ~fPsl~~L~L 229 (505)
T KOG3207|consen 220 TFPSLEVLYL 229 (505)
T ss_pred hCCcHHHhhh
Confidence 7777765543
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.89 E-value=0.01 Score=64.78 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=29.2
Q ss_pred ccccccCCeeeccCc-ccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCC
Q 021827 4 VTSVVSLRALILNDN-EIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNP 53 (307)
Q Consensus 4 L~~L~nL~aL~LS~N-~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNP 53 (307)
+..|++|+.|+|++| .|+.|+.+..+++|++|+|++ .|++|+.|+|.+|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 345566666666553 355666666666666666653 44566666666654
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.89 E-value=0.004 Score=43.59 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.3
Q ss_pred ccccccCCeeeccCcccccccCCC
Q 021827 4 VTSVVSLRALILNDNEIVSICKLD 27 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe 27 (307)
|.+|++|+.|+|++|+|++|+.|+
T Consensus 20 l~~l~~L~~L~l~~N~i~~i~~l~ 43 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPISDISPLS 43 (44)
T ss_dssp GTTCTTSSEEEETSSCCSBEGGGT
T ss_pred HhCCCCCCEEEecCCCCCCCcCCC
Confidence 789999999999999999998775
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.85 E-value=0.0019 Score=60.19 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=34.2
Q ss_pred ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~ 57 (307)
|..|.||+.|+|++|||+.++- ++.|++|.+|.++- .||-|..|.|..|.+.+.
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 4456666666666666666654 66666666666662 566666666666666543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.81 E-value=0.0044 Score=58.00 Aligned_cols=51 Identities=35% Similarity=0.559 Sum_probs=40.4
Q ss_pred cCCeeeccCcccccc-cCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827 9 SLRALILNDNEIVSI-CKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 9 nL~aL~LS~N~IssI-egLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~ 59 (307)
+|+.|++++|+|+.| ..+..|++|+.|+|++ .+++|+.|+|.+|-+...+.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence 788888888888888 4788888888888885 45777778888888877665
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.78 E-value=0.005 Score=62.90 Aligned_cols=31 Identities=39% Similarity=0.700 Sum_probs=23.5
Q ss_pred CCCCCCCCeEeccc-----------CCCCCceEEccCCCccC
Q 021827 26 LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 26 Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak 56 (307)
|-+|.+|.||||.+ .|.||++|-|.||||..
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence 55566666666665 78889999999999983
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.78 E-value=0.0081 Score=64.33 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=28.5
Q ss_pred cCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCc
Q 021827 9 SLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~ 57 (307)
+|+.|+|++|+|++|+.+ +.+|+.|+|++ .|++|..|+|+|||++..
T Consensus 403 ~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 403 ELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 455555555555555543 23556666664 456777788888887754
No 39
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.70 E-value=0.0045 Score=67.62 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=46.3
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CC--CCCceEEccCCCcc
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YF--FNLNNLNLQGNPVA 55 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L--~nLrtLnLeGNPIa 55 (307)
.|..|..|++|+...|+|.+++.+.+|++|.+||||. .+ ++|+.|+|.||+=-
T Consensus 425 tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 4567788999999999999999999999999999996 22 79999999999953
No 40
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.68 E-value=0.0017 Score=69.33 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=34.8
Q ss_pred cccccccCCeeeccCcccccccC-CC-------------------------CCCCCCeEeccc-----------CCCCCc
Q 021827 3 DVTSVVSLRALILNDNEIVSICK-LD-------------------------QMKELNTLGMDS-----------YFFNLN 45 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg-Le-------------------------~L~nL~TLdLS~-----------~L~nLr 45 (307)
+|..|.+|+.|.++||++.+|.| |. .|..|++||||+ .-+|+-
T Consensus 50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 45555566666666666555544 33 344566666665 336677
Q ss_pred eEEccCCCccCccc
Q 021827 46 NLNLQGNPVAEYDK 59 (307)
Q Consensus 46 tLnLeGNPIak~e~ 59 (307)
+|||+.|.|-..++
T Consensus 130 VLNLS~N~IetIPn 143 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPN 143 (1255)
T ss_pred EEEcccCccccCCc
Confidence 77888877777665
No 41
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.64 E-value=0.019 Score=62.73 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccccccCCeeeccCc-ccccccCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 4 VTSVVSLRALILNDN-EIVSICKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 4 L~~L~nL~aL~LS~N-~IssIegLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
+.+|++|+.|+|++| .++.|+..-.|+.|++|+|++ .+.+|+.|+|.+|.|...+. -...||+|++
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~----si~~l~~L~~ 873 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW----WIEKFSNLSF 873 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChH----HHhcCCCCCE
Confidence 456777888888764 577776644677888888875 23578888888888876654 2345777777
Q ss_pred ec
Q 021827 74 FN 75 (307)
Q Consensus 74 LD 75 (307)
|+
T Consensus 874 L~ 875 (1153)
T PLN03210 874 LD 875 (1153)
T ss_pred EE
Confidence 75
No 42
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.54 E-value=0.002 Score=60.05 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=58.4
Q ss_pred cccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
+|-.+.+...|-||||.|+.++- +..|.+|+.|.|++ +|++|+.||+.-|-+.-.+. =.-.+|-
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lpr----gfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPR----GFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcc----ccCCCch
Confidence 34456778899999999998865 99999999999997 88999999999887765543 1235788
Q ss_pred CceecCccc
Q 021827 71 LCIFNARPI 79 (307)
Q Consensus 71 L~yLDarpV 79 (307)
|.+||-.+-
T Consensus 104 levldltyn 112 (264)
T KOG0617|consen 104 LEVLDLTYN 112 (264)
T ss_pred hhhhhcccc
Confidence 888886553
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.29 E-value=0.0065 Score=61.71 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=47.1
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~ 57 (307)
+.+..|++|+|..|+|..|++ +..|..|.||.|.. .+..|.+|+|-+||+.=+
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 567789999999999999998 88999999999995 668899999999999643
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.13 E-value=0.0091 Score=59.55 Aligned_cols=56 Identities=27% Similarity=0.217 Sum_probs=48.4
Q ss_pred cccCCeeeccCcccccccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHH
Q 021827 7 VVSLRALILNDNEIVSICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAK 62 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~Yrr 62 (307)
-..|++|+||+|.|+.|.. .--+++++.|+||+ .|++|..|.|++|-+++.+.+-.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHh
Confidence 3568999999999999987 66688999999997 78999999999999998876543
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.06 E-value=0.0038 Score=56.19 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=49.7
Q ss_pred ccccccCCeeeccCcccccccC-CCCC-CCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK-LDQM-KELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg-Le~L-~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
|.....|.+..|++|++.+++. |... +-++||.|++ .++.|+.|||..||+...+. +.+-|-+
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~----vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPR----VIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchH----HHHHHHh
Confidence 4555678889999999997775 4443 3678999987 77999999999999987654 2222444
Q ss_pred Cceec
Q 021827 71 LCIFN 75 (307)
Q Consensus 71 L~yLD 75 (307)
|.+||
T Consensus 125 l~~Ld 129 (177)
T KOG4579|consen 125 LDMLD 129 (177)
T ss_pred HHHhc
Confidence 45554
No 46
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.98 E-value=0.026 Score=60.10 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=14.4
Q ss_pred cCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827 9 SLRALILNDNEIVSICKLDQMKELNTLGMDS 39 (307)
Q Consensus 9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~ 39 (307)
+|+.|+|++|.|++|+. .-+.+|++|+|++
T Consensus 200 ~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~ 229 (754)
T PRK15370 200 QITTLILDNNELKSLPE-NLQGNIKTLYANS 229 (754)
T ss_pred CCcEEEecCCCCCcCCh-hhccCCCEEECCC
Confidence 35555555555555543 1123455555543
No 47
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=94.82 E-value=0.021 Score=37.42 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.4
Q ss_pred cchHHHHHHhCCCCceecCccc
Q 021827 58 DKLAKKVKTLLPNLCIFNARPI 79 (307)
Q Consensus 58 e~YrrKI~a~LP~L~yLDarpV 79 (307)
+.||.+|+.+||+|++||....
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred ccHHHHHHHHCCccceeccccc
Confidence 5799999999999999997643
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.15 E-value=0.0081 Score=64.92 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=28.7
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 39 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~ 39 (307)
|+-|.-|+.|+|++|+++...+|-.|++|.+||||.
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhccccccccccc
Confidence 344566888888888888888888888888888884
No 49
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.14 E-value=0.031 Score=34.47 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.1
Q ss_pred cccCCeeeccCcccccccC
Q 021827 7 VVSLRALILNDNEIVSICK 25 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIeg 25 (307)
|++|+.|+|++|+|+.|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 5778888888888888763
No 50
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.14 E-value=0.031 Score=34.47 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.1
Q ss_pred cccCCeeeccCcccccccC
Q 021827 7 VVSLRALILNDNEIVSICK 25 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIeg 25 (307)
|++|+.|+|++|+|+.|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 5778888888888888763
No 51
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.09 E-value=0.028 Score=59.78 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=26.6
Q ss_pred ccCCeeeccCcccccccC-CCCCCCCCeEeccc---------CCCCCceEEccCCCccCcc
Q 021827 8 VSLRALILNDNEIVSICK-LDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYD 58 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e 58 (307)
.+|+.|+|++|.|+.|+. + .+.|+.|+|++ -.++|++|+|.+|.+...+
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP 383 (754)
T ss_pred ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC
Confidence 356666666666665553 2 24556666654 1135556666666555443
No 52
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.56 E-value=0.039 Score=32.14 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=9.8
Q ss_pred ccCCeeeccCccccccc
Q 021827 8 VSLRALILNDNEIVSIC 24 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIe 24 (307)
++|+.|+|++|+|++|+
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46788888888877663
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.42 E-value=0.047 Score=33.12 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.4
Q ss_pred cCCeeeccCcccccccC
Q 021827 9 SLRALILNDNEIVSICK 25 (307)
Q Consensus 9 nL~aL~LS~N~IssIeg 25 (307)
+|+.|+|++|+|+.|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 58899999999998775
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.18 E-value=0.038 Score=55.11 Aligned_cols=71 Identities=27% Similarity=0.256 Sum_probs=37.3
Q ss_pred cccccCCeeeccCccccccc-----C-CCCCCCCCeEeccc-----------------CCCCCceEEccCCCccCccchH
Q 021827 5 TSVVSLRALILNDNEIVSIC-----K-LDQMKELNTLGMDS-----------------YFFNLNNLNLQGNPVAEYDKLA 61 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIe-----g-Le~L~nL~TLdLS~-----------------~L~nLrtLnLeGNPIak~e~Yr 61 (307)
..|++|+.|+|++|-++.-- . |..+++|+.|+|+. .+|+|.+|.|.||-|.......
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 44556666666666655221 1 44555555555553 4566666666666665544332
Q ss_pred HHHH-HhCCCCceec
Q 021827 62 KKVK-TLLPNLCIFN 75 (307)
Q Consensus 62 rKI~-a~LP~L~yLD 75 (307)
..+. +-.|.|..|+
T Consensus 290 la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLN 304 (382)
T ss_pred HHHHHhcchhhHHhc
Confidence 2222 3356665554
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.68 E-value=0.04 Score=52.63 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=28.9
Q ss_pred cccccCCeeeccCcccc---cccCCCCCCCCCeEeccc
Q 021827 5 TSVVSLRALILNDNEIV---SICKLDQMKELNTLGMDS 39 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~Is---sIegLe~L~nL~TLdLS~ 39 (307)
..+++|+.|+|+.|+|. +|..|..|.||.+|+|.+
T Consensus 88 e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n 125 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFN 125 (260)
T ss_pred hhCCceeEEeecCCccccccccchhhhhcchhhhhccc
Confidence 45699999999999998 555566777888999986
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.61 E-value=0.045 Score=51.28 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=17.0
Q ss_pred CCCCCceEEccCCCccCc-cchHHHHHHhCCCCcee
Q 021827 40 YFFNLNNLNLQGNPVAEY-DKLAKKVKTLLPNLCIF 74 (307)
Q Consensus 40 ~L~nLrtLnLeGNPIak~-e~YrrKI~a~LP~L~yL 74 (307)
+|+||+-|.|.+=|.... +.....+..+||.|++.
T Consensus 174 ~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HhhhhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 455555555555554433 22233444566666554
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.52 E-value=0.05 Score=59.03 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=18.2
Q ss_pred ccccccCCeeeccCcccccccC-CCCCCCCCeEecc
Q 021827 4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD 38 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS 38 (307)
|..|.+|+.|+|++-.|+.|+. |..|+.|.+|+|.
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 3445555555555555554443 5555555555555
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.30 E-value=0.056 Score=57.20 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=58.8
Q ss_pred ccccccccCCeeeccCccccc---ccCCCCCCCCCeEeccc------------------CCCCCceEEccCCCccCccch
Q 021827 2 DDVTSVVSLRALILNDNEIVS---ICKLDQMKELNTLGMDS------------------YFFNLNNLNLQGNPVAEYDKL 60 (307)
Q Consensus 2 DeL~~L~nL~aL~LS~N~Iss---IegLe~L~nL~TLdLS~------------------~L~nLrtLnLeGNPIak~e~Y 60 (307)
.+|+.|.||+.|.+.+=.|++ |..|=+|++|++||+|. -||+||.|..+|.-+...-
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~-- 266 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI-- 266 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH--
Confidence 478899999999999888886 33577899999999995 7899999999988776543
Q ss_pred HHHHHHhCCCCceecCc
Q 021827 61 AKKVKTLLPNLCIFNAR 77 (307)
Q Consensus 61 rrKI~a~LP~L~yLDar 77 (307)
...++..-|+|+++-+-
T Consensus 267 le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHhCccHhhhhhh
Confidence 25666677877776643
No 59
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.75 E-value=0.037 Score=56.79 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=11.5
Q ss_pred ccccCCCCCccccCCCC
Q 021827 286 LTVQLSQEPEVGLGGPS 302 (307)
Q Consensus 286 ~~~~l~~~~EvG~Gg~S 302 (307)
+-.|+.++++-||++.+
T Consensus 489 s~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMR 505 (565)
T ss_pred ccccccccChHHhhhhh
Confidence 33677777777877743
No 60
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.46 E-value=0.16 Score=53.88 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.8
Q ss_pred CCCCCceEEccCCCccCccc
Q 021827 40 YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 40 ~L~nLrtLnLeGNPIak~e~ 59 (307)
+|..|++|-|+.||+.+-+.
T Consensus 232 ~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhhheeeeeccCCCCCChH
Confidence 88999999999999988655
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.69 E-value=0.15 Score=50.93 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=13.2
Q ss_pred CCeeeccCcccccccC----CCCCCCCCeEecc
Q 021827 10 LRALILNDNEIVSICK----LDQMKELNTLGMD 38 (307)
Q Consensus 10 L~aL~LS~N~IssIeg----Le~L~nL~TLdLS 38 (307)
+++|+|..|+|+.-+. |++|+.|++|.||
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls 105 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLS 105 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeecc
Confidence 4445555555542211 4444444555544
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=86.87 E-value=0.51 Score=51.47 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=39.0
Q ss_pred cccCCeeeccCcc--cccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccc
Q 021827 7 VVSLRALILNDNE--IVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 7 L~nL~aL~LS~N~--IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~ 59 (307)
+.+|++|-|..|. +..|.+ +-.|+.|.+||||. .|-+||.|+|++..|...|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence 3468888888886 777777 77788888888883 56777888888877765543
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.70 E-value=0.13 Score=46.63 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=57.9
Q ss_pred cCCeeeccCcccccccC----CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 9 SLRALILNDNEIVSICK----LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 9 nL~aL~LS~N~IssIeg----Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
.|-.|.|+..+|-.|.. |.....|++.+||. .|+-+.+|||+.|-|++.+- . .+.+|.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe---E-~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE---E-LAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH---H-HhhhHHhh
Confidence 46788999998886654 77888999999996 66789999999999999887 2 78899999
Q ss_pred eecCcc--cChhhhh
Q 021827 73 IFNARP--IDRITKN 85 (307)
Q Consensus 73 yLDarp--V~e~tRe 85 (307)
.|+.+. +...-|-
T Consensus 104 ~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRV 118 (177)
T ss_pred hcccccCccccchHH
Confidence 888653 4444443
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.46 E-value=0.47 Score=47.62 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=63.4
Q ss_pred ccccccCCeeeccCccccc------ccCCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccch-
Q 021827 4 VTSVVSLRALILNDNEIVS------ICKLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKL- 60 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Iss------IegLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~Y- 60 (307)
++.+.+|+++-++.|.|.. .++|..|++|+.|||.. .+++|+.|||..+-+...--|
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 4566889999999999973 24588999999999985 779999999999999876444
Q ss_pred -HHHHHHhCCCCceecCcccChhhhhhh
Q 021827 61 -AKKVKTLLPNLCIFNARPIDRITKNEK 87 (307)
Q Consensus 61 -rrKI~a~LP~L~yLDarpV~e~tRe~a 87 (307)
.+.+..-.|.|+.++. +-.+.+|+.+
T Consensus 261 ~~~al~~~~p~L~vl~l-~gNeIt~da~ 287 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLEL-AGNEITRDAA 287 (382)
T ss_pred HHHHHhccCCCCceecc-CcchhHHHHH
Confidence 4455556899999983 3344555544
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.45 E-value=0.53 Score=47.82 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=36.8
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCC
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNP 53 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNP 53 (307)
|..|.+|..|+|++|.|++++.|+. +|++|.|++ -.++|+.|+|.+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP~--sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLPN--ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCCC--CCcEEEccCCCCcccCCchhhhhhhheEccCcc
Confidence 4457889999999998888874432 589999886 12578888888873
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.02 E-value=0.3 Score=45.86 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=49.4
Q ss_pred CCeeeccCccccc--ccCCCCCCCCCeEeccc--------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 10 LRALILNDNEIVS--ICKLDQMKELNTLGMDS--------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 10 L~aL~LS~N~Iss--IegLe~L~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
+++++-++-.|.. +++|..|+.|.+|.|.+ -+++|+.|.|+|||....-. ...+..|++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--HHHHHHhhhhHH
Confidence 6788888888874 46688888888888886 45999999999999977655 345555666665
Q ss_pred ecC
Q 021827 74 FNA 76 (307)
Q Consensus 74 LDa 76 (307)
|..
T Consensus 181 L~l 183 (221)
T KOG3864|consen 181 LHL 183 (221)
T ss_pred HHh
Confidence 543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.98 E-value=0.6 Score=43.55 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=38.9
Q ss_pred ccccCCeeeccCc--cccc-----ccCCCCCCCCCeEeccc--------------CCCCCceEEccCCCccCccchHHHH
Q 021827 6 SVVSLRALILNDN--EIVS-----ICKLDQMKELNTLGMDS--------------YFFNLNNLNLQGNPVAEYDKLAKKV 64 (307)
Q Consensus 6 ~L~nL~aL~LS~N--~Iss-----IegLe~L~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~e~YrrKI 64 (307)
.+.+|++|+|+.+ .+.. ..-+..+.+|+.|+|+. .+++|++|.+.+++-..... -..|
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g-l~~i 290 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG-LVSI 290 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH-HHHH
Confidence 4556777777652 1111 11234456666666664 45677777755555322222 2455
Q ss_pred HHhCCCCceecCcc
Q 021827 65 KTLLPNLCIFNARP 78 (307)
Q Consensus 65 ~a~LP~L~yLDarp 78 (307)
...+|.|+.|+-..
T Consensus 291 ~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 291 AERCPSLRELDLSG 304 (482)
T ss_pred HHhcCcccEEeeec
Confidence 56667777776554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.22 E-value=0.082 Score=52.31 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=59.2
Q ss_pred cccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee--
Q 021827 7 VVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF-- 74 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL-- 74 (307)
|.+.+-|++-+.+|..|.=+..++-|+.|.||- +|.+|+.|||..|-|.+.+. .+-+.-||+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE--L~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE--LEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH--HHHHhcCchhhhHhh
Confidence 566788999999999999999999999999993 88999999999999999876 3556678888864
Q ss_pred cCccc
Q 021827 75 NARPI 79 (307)
Q Consensus 75 DarpV 79 (307)
+-.|.
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 44554
No 69
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=84.80 E-value=0.078 Score=56.15 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=38.9
Q ss_pred ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~ 57 (307)
...|..|..|+|++|.|.+|.- +-+|..|+.|+|+. .|+ |+.|.+..|-+...
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~l 158 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSL 158 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccC
Confidence 3456778888888888887766 66677778888885 444 77888888777654
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.91 E-value=0.9 Score=26.38 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=10.6
Q ss_pred CCCceEEccCCCccCc
Q 021827 42 FNLNNLNLQGNPVAEY 57 (307)
Q Consensus 42 ~nLrtLnLeGNPIak~ 57 (307)
++|++|+|.+|.+.+.
T Consensus 1 ~~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSL 16 (17)
T ss_dssp TT-SEEEETSS--SSE
T ss_pred CccCEEECCCCCCCCC
Confidence 5799999999998654
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.20 E-value=1.2 Score=27.22 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.3
Q ss_pred CCCCceEEccCCCccCccc
Q 021827 41 FFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 41 L~nLrtLnLeGNPIak~e~ 59 (307)
|++|++|+|.+|.|...+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 5789999999999988765
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.20 E-value=1.2 Score=27.22 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.3
Q ss_pred CCCCceEEccCCCccCccc
Q 021827 41 FFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 41 L~nLrtLnLeGNPIak~e~ 59 (307)
|++|++|+|.+|.|...+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 5789999999999988765
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.03 E-value=0.89 Score=27.53 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=5.6
Q ss_pred ccCCeeeccCcccc
Q 021827 8 VSLRALILNDNEIV 21 (307)
Q Consensus 8 ~nL~aL~LS~N~Is 21 (307)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444555555443
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.98 E-value=1.1 Score=29.43 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.2
Q ss_pred ccCCeeeccCcccccccCCCC
Q 021827 8 VSLRALILNDNEIVSICKLDQ 28 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIegLe~ 28 (307)
.+|+.|++++|+|++++-|..
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~~ 22 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELXX 22 (26)
T ss_pred cccceeecCCCccccCccccc
Confidence 468999999999999886543
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=72.44 E-value=2.5 Score=39.48 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=47.8
Q ss_pred cccccCCeeeccCcc-ccc--ccCCCC-CCCCCeEeccc--------------CCCCCceEEccCCCccCccchHHHHHH
Q 021827 5 TSVVSLRALILNDNE-IVS--ICKLDQ-MKELNTLGMDS--------------YFFNLNNLNLQGNPVAEYDKLAKKVKT 66 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~-Iss--IegLe~-L~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~e~YrrKI~a 66 (307)
..+.+|+.|+|+... |+. |+.+.. +++|++|.+.. .+++|+.|+|.++.......+... ..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~ 318 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LK 318 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HH
Confidence 345778888888777 442 222222 66778877664 789999999999998866555444 55
Q ss_pred hCCCCceec
Q 021827 67 LLPNLCIFN 75 (307)
Q Consensus 67 ~LP~L~yLD 75 (307)
.+|+|+.|.
T Consensus 319 ~c~~l~~l~ 327 (482)
T KOG1947|consen 319 NCPNLRELK 327 (482)
T ss_pred hCcchhhhh
Confidence 588766644
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.96 E-value=6 Score=30.73 Aligned_cols=67 Identities=10% Similarity=0.180 Sum_probs=33.5
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
..+.+|+.+.+.+ .++.|.. +..+++|+.|.+.+ .+++|+.|++.. .+...+. .....+++|
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~---~~F~~~~~l 83 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGD---NAFSNCTNL 83 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-T---TTTTT-TTE
T ss_pred hCCCCCCEEEECC-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc-ccccccc---ccccccccc
Confidence 4556777888774 5777766 66777778887775 445677777743 3333333 233456666
Q ss_pred ceecC
Q 021827 72 CIFNA 76 (307)
Q Consensus 72 ~yLDa 76 (307)
..++.
T Consensus 84 ~~i~~ 88 (129)
T PF13306_consen 84 KNIDI 88 (129)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 66664
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.30 E-value=4.6 Score=31.39 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=34.9
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCc
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~ 57 (307)
..+.+|+.|.+.++ |..|.. +..++.|+.+.+.+ .+++|+.+.+..| +...
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i 95 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEI 95 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEE
T ss_pred cccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccCcc-ccEE
Confidence 45678999999886 888877 78888899999974 4688889998766 5433
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=68.89 E-value=1.9 Score=43.00 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=44.3
Q ss_pred ccccccccCCeeeccCcccc-----cccC-CCCCCCCCeEeccc----------------------CCCCCceEEccCCC
Q 021827 2 DDVTSVVSLRALILNDNEIV-----SICK-LDQMKELNTLGMDS----------------------YFFNLNNLNLQGNP 53 (307)
Q Consensus 2 DeL~~L~nL~aL~LS~N~Is-----sIeg-Le~L~nL~TLdLS~----------------------~L~nLrtLnLeGNP 53 (307)
+++..+..+..++||+|-|. .||+ +..-.+|....+|. .||.|++++|+.|-
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 35567888999999999997 4555 56667788888875 78999999999998
Q ss_pred ccCc
Q 021827 54 VAEY 57 (307)
Q Consensus 54 Iak~ 57 (307)
|...
T Consensus 104 fg~~ 107 (388)
T COG5238 104 FGSE 107 (388)
T ss_pred cCcc
Confidence 8653
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.13 E-value=3.8 Score=26.13 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=7.8
Q ss_pred CCceEEccCCCccC
Q 021827 43 NLNNLNLQGNPVAE 56 (307)
Q Consensus 43 nLrtLnLeGNPIak 56 (307)
+|+.|+|++|+|..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45556666665543
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=64.91 E-value=9 Score=38.39 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=19.8
Q ss_pred CCCceEEccCCCccCc--cchHHHHHHhCCCCceecC
Q 021827 42 FNLNNLNLQGNPVAEY--DKLAKKVKTLLPNLCIFNA 76 (307)
Q Consensus 42 ~nLrtLnLeGNPIak~--e~YrrKI~a~LP~L~yLDa 76 (307)
.+|+++-+..|-|... ......=..++-+|.+||-
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDl 221 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDL 221 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeec
Confidence 3666666666666544 3333333456666666663
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.44 E-value=5.3 Score=25.88 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.2
Q ss_pred CCCCceEEccCCCccCccc
Q 021827 41 FFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 41 L~nLrtLnLeGNPIak~e~ 59 (307)
|.+|+.|+|.+|.|...++
T Consensus 1 L~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 1 LTNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CCccCEEECCCCccceecC
Confidence 4678889999998877665
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=59.21 E-value=0.61 Score=45.48 Aligned_cols=49 Identities=16% Similarity=0.036 Sum_probs=29.5
Q ss_pred ccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCc
Q 021827 6 SVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPV 54 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPI 54 (307)
-|+.|..|+||.|+|.-++. ..++.++..+++.+ +++.++.+.+.|||+
T Consensus 63 ~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 34445555555555555544 44444444444432 778999999999995
No 83
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=57.71 E-value=6.6 Score=39.69 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=38.1
Q ss_pred ccccCCeeeccCcc-cc--cccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 6 SVVSLRALILNDNE-IV--SICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 6 ~L~nL~aL~LS~N~-Is--sIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
.+++|..|+||+|- |+ .+.-+-+++-|++|.||. ..|.|.+|+..|. +.+..| .-....+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~m-el~~e~~~ 387 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTM-ELLKEMLS 387 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHH-HHHHHhCc
Confidence 45677777777653 22 222355666667777774 5577777777763 333332 34445677
Q ss_pred CCce
Q 021827 70 NLCI 73 (307)
Q Consensus 70 ~L~y 73 (307)
+|.+
T Consensus 388 ~lki 391 (419)
T KOG2120|consen 388 HLKI 391 (419)
T ss_pred cccc
Confidence 7543
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=54.40 E-value=13 Score=37.97 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=27.7
Q ss_pred cCCeeeccC-cccccccC-CCCCCCCCeEeccc------CCCCCceEEccCCCc
Q 021827 9 SLRALILND-NEIVSICK-LDQMKELNTLGMDS------YFFNLNNLNLQGNPV 54 (307)
Q Consensus 9 nL~aL~LS~-N~IssIeg-Le~L~nL~TLdLS~------~L~nLrtLnLeGNPI 54 (307)
+|+.|+|++ +.++++++ |+ .+|+.|.|++ -...|++|+|.+|-+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~ 124 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKGSAT 124 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCCCCC
Confidence 588888876 66666664 32 4677777765 124566677766554
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.19 E-value=9.7 Score=46.69 Aligned_cols=40 Identities=25% Similarity=0.484 Sum_probs=26.0
Q ss_pred eccCcccccccC--CCCCCCCCeEecccCCCCCceEEccCCCcc---CccchHHHHH
Q 021827 14 ILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVA---EYDKLAKKVK 65 (307)
Q Consensus 14 ~LS~N~IssIeg--Le~L~nL~TLdLS~~L~nLrtLnLeGNPIa---k~e~YrrKI~ 65 (307)
+|++|+|+.|+. +..| ++|+.|.|.|||+. ...-+++++.
T Consensus 1 DLSnN~LstLp~g~F~~L------------~sL~~LdLsgNPw~CDC~L~WL~~WL~ 45 (2740)
T TIGR00864 1 DISNNKISTIEEGICANL------------CNLSEIDLSGNPFECDCGLARLPRWAE 45 (2740)
T ss_pred CCCCCcCCccChHHhccC------------CCceEEEeeCCccccccccHHHHHHHH
Confidence 589999999987 4444 55667777778873 3333444444
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=5.9 Score=40.05 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=16.2
Q ss_pred ccccCCeeeccCcccc-cccC-CCCCCCCCeEecc
Q 021827 6 SVVSLRALILNDNEIV-SICK-LDQMKELNTLGMD 38 (307)
Q Consensus 6 ~L~nL~aL~LS~N~Is-sIeg-Le~L~nL~TLdLS 38 (307)
+|..|+-|.|-+|++. -|++ +....+|.-|+||
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 3444555555555554 2333 4445555555555
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=31.44 E-value=7.4 Score=39.75 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=18.7
Q ss_pred CCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 42 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 42 ~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
..|+.|.|+.|+|..... +.+...++.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~--~~L~~~l~~~~ 290 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGV--RDLAEVLVSCR 290 (478)
T ss_pred hhhhhhhhhcCCccccch--HHHHHHHhhhH
Confidence 567888999999887655 34444444333
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.60 E-value=20 Score=38.13 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=25.1
Q ss_pred ccCCeeeccCc--ccccccCCCCCC--CCCeEeccc
Q 021827 8 VSLRALILNDN--EIVSICKLDQMK--ELNTLGMDS 39 (307)
Q Consensus 8 ~nL~aL~LS~N--~IssIegLe~L~--nL~TLdLS~ 39 (307)
++|.+|.||+| .|.+-..|+.++ .|+.|.|-.
T Consensus 244 pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~G 279 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEG 279 (585)
T ss_pred chhheeecccchhhhcchhhhhhhcCCCHHHeeecC
Confidence 67999999999 777777777655 567888874
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.67 E-value=43 Score=20.58 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=13.5
Q ss_pred CCCCceEEccCCCccCcc
Q 021827 41 FFNLNNLNLQGNPVAEYD 58 (307)
Q Consensus 41 L~nLrtLnLeGNPIak~e 58 (307)
+++|+.|+|.++|-..+.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 478999999999855443
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=21.25 E-value=3.9 Score=40.12 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=38.8
Q ss_pred cccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCcc
Q 021827 3 DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVA 55 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIa 55 (307)
+|-++...+.|+|+.|++..+.. +..|+.|.-|+||. ++..++++.+..|-.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh
Confidence 45567778899999999998865 88899999999996 3344555555555443
No 91
>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]
Probab=21.05 E-value=35 Score=31.59 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCCceEEccCCCccCccchHHHHHHhCCCCc-eecCcccChhhhhh
Q 021827 42 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC-IFNARPIDRITKNE 86 (307)
Q Consensus 42 ~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~-yLDarpV~e~tRe~ 86 (307)
|. +.==+.||-|+++ |+|+...+|.|. ||-||.|+=++-.+
T Consensus 98 p~-~~spicGNSI~qD---RrFl~r~MP~Le~yfHYR~lDVSTlKE 139 (184)
T COG1949 98 PK-GVSPICGNSIAQD---RRFLFRYMPKLEAYFHYRYLDVSTLKE 139 (184)
T ss_pred CC-CCCCCccchhhHH---HHHHHHHhhhHHHHhhhHhhhHHHHHH
Confidence 44 5556889999887 679999999994 88899998877443
Done!