Query 021827
Match_columns 307
No_of_seqs 122 out of 188
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rw6_A Nuclear RNA export fact 99.3 3E-12 1E-16 116.5 6.0 78 5-82 167-264 (267)
2 1a9n_A U2A', U2A'; complex (nu 99.2 2.6E-11 9E-16 98.5 9.0 87 3-89 59-160 (176)
3 1ds9_A Outer arm dynein; leuci 99.1 7.7E-12 2.6E-16 103.4 -1.0 82 6-87 91-192 (198)
4 2ell_A Acidic leucine-rich nuc 99.0 4.6E-10 1.6E-14 89.7 6.5 81 4-84 67-162 (168)
5 2je0_A Acidic leucine-rich nuc 99.0 9E-10 3.1E-14 86.4 8.0 72 5-76 39-147 (149)
6 1dce_A Protein (RAB geranylger 98.8 3E-09 1E-13 103.9 6.1 73 3-75 481-566 (567)
7 1xeu_A Internalin C; cellular 98.8 9.9E-10 3.4E-14 95.7 0.2 85 3-87 123-217 (263)
8 3e6j_A Variable lymphocyte rec 98.7 9.6E-09 3.3E-13 87.3 5.5 81 5-85 109-206 (229)
9 2r9u_A Variable lymphocyte rec 98.7 2.9E-08 9.9E-13 81.9 7.1 76 4-79 53-146 (174)
10 2wfh_A SLIT homolog 2 protein 98.6 3.6E-08 1.2E-12 82.3 6.0 69 4-75 50-132 (193)
11 1h6t_A Internalin B; cell adhe 98.6 5.3E-09 1.8E-13 92.1 0.4 68 3-75 129-206 (291)
12 4ezg_A Putative uncharacterize 98.6 6.2E-08 2.1E-12 79.9 6.2 71 3-76 61-143 (197)
13 4ezg_A Putative uncharacterize 98.6 1.1E-07 3.7E-12 78.4 6.8 71 2-77 82-167 (197)
14 4fmz_A Internalin; leucine ric 98.5 1.1E-07 3.7E-12 83.3 6.8 52 5-56 240-301 (347)
15 2v9t_B SLIT homolog 2 protein 98.5 8.9E-08 3E-12 81.1 5.9 72 3-77 51-136 (220)
16 1w8a_A SLIT protein; signaling 98.5 8.8E-08 3E-12 79.3 5.2 69 4-75 50-132 (192)
17 1h6t_A Internalin B; cell adhe 98.5 1.1E-07 3.7E-12 83.8 5.8 67 4-75 86-162 (291)
18 3e6j_A Variable lymphocyte rec 98.5 1.8E-07 6.2E-12 79.4 7.0 69 4-76 60-142 (229)
19 3g39_A Variable lymphocyte rec 98.5 1.2E-07 4.2E-12 77.4 5.7 54 4-57 50-117 (170)
20 2o6r_A Variable lymphocyte rec 98.5 1.3E-07 4.4E-12 76.3 5.7 65 8-75 28-106 (177)
21 2v9t_B SLIT homolog 2 protein 98.5 1.3E-07 4.6E-12 80.0 5.8 67 8-77 32-112 (220)
22 1a9n_A U2A', U2A'; complex (nu 98.5 1.3E-07 4.4E-12 76.7 5.4 71 4-76 37-120 (176)
23 3rfs_A Internalin B, repeat mo 98.5 1.3E-07 4.4E-12 81.7 5.6 71 3-76 58-140 (272)
24 2v70_A SLIT-2, SLIT homolog 2 98.5 1.5E-07 5.2E-12 79.7 5.6 70 4-76 53-136 (220)
25 3g39_A Variable lymphocyte rec 98.5 1.7E-07 5.8E-12 76.6 5.5 67 7-76 29-109 (170)
26 4g8a_A TOLL-like receptor 4; l 98.5 1.2E-07 4.1E-12 87.7 5.0 55 4-58 72-140 (635)
27 2v70_A SLIT-2, SLIT homolog 2 98.4 1.8E-07 6E-12 79.3 5.4 69 4-75 77-159 (220)
28 2o6s_A Variable lymphocyte rec 98.4 2.2E-07 7.4E-12 76.6 5.7 71 4-77 48-132 (208)
29 4fmz_A Internalin; leucine ric 98.4 2.6E-07 9E-12 80.8 6.6 69 3-76 61-139 (347)
30 2r9u_A Variable lymphocyte rec 98.4 2E-07 6.9E-12 76.8 5.4 66 8-76 33-112 (174)
31 1h6u_A Internalin H; cell adhe 98.4 3.5E-07 1.2E-11 80.9 6.8 68 3-75 58-135 (308)
32 3m19_A Variable lymphocyte rec 98.4 2.8E-07 9.4E-12 78.5 5.8 70 4-76 55-138 (251)
33 1h6u_A Internalin H; cell adhe 98.4 3.4E-07 1.2E-11 81.0 6.5 66 6-76 39-114 (308)
34 3m19_A Variable lymphocyte rec 98.4 2.9E-07 9.9E-12 78.4 5.7 71 4-77 79-163 (251)
35 2o6s_A Variable lymphocyte rec 98.4 3.1E-07 1.1E-11 75.6 5.7 67 7-76 27-107 (208)
36 2xot_A Amphoterin-induced prot 98.4 3.1E-07 1.1E-11 82.8 6.0 52 6-57 62-127 (361)
37 3rfs_A Internalin B, repeat mo 98.4 3.8E-07 1.3E-11 78.7 6.0 72 3-77 80-165 (272)
38 1xeu_A Internalin C; cellular 98.4 2.9E-07 9.8E-12 80.2 5.1 53 4-57 81-143 (263)
39 2ifg_A High affinity nerve gro 98.4 2.8E-07 9.5E-12 81.4 5.0 55 4-58 27-96 (347)
40 1ozn_A Reticulon 4 receptor; N 98.3 7.6E-07 2.6E-11 76.5 7.1 69 4-75 125-207 (285)
41 1m9s_A Internalin B; cell inva 98.3 4.2E-07 1.4E-11 89.8 6.2 32 7-38 108-139 (605)
42 1m9s_A Internalin B; cell inva 98.3 9.5E-08 3.3E-12 94.4 1.4 70 2-76 125-204 (605)
43 4g8a_A TOLL-like receptor 4; l 98.3 4.2E-07 1.4E-11 84.1 5.5 67 8-77 52-132 (635)
44 2o6q_A Variable lymphocyte rec 98.3 5.7E-07 1.9E-11 77.3 5.7 71 4-77 105-189 (270)
45 2o6q_A Variable lymphocyte rec 98.3 6.7E-07 2.3E-11 76.9 6.0 70 4-76 57-140 (270)
46 2ell_A Acidic leucine-rich nuc 98.3 9.6E-07 3.3E-11 70.4 6.3 70 5-76 46-127 (168)
47 2je0_A Acidic leucine-rich nuc 98.3 1.7E-06 5.7E-11 67.7 7.5 69 6-77 15-96 (149)
48 1w8a_A SLIT protein; signaling 98.3 1.8E-06 6.2E-11 71.4 7.6 56 3-58 73-142 (192)
49 2o6r_A Variable lymphocyte rec 98.3 1.3E-06 4.5E-11 70.4 6.6 70 4-76 48-131 (177)
50 2wfh_A SLIT homolog 2 protein 98.3 9.5E-07 3.3E-11 73.7 5.8 53 4-56 74-140 (193)
51 1o6v_A Internalin A; bacterial 98.3 1.1E-06 3.6E-11 81.4 6.6 70 2-76 62-141 (466)
52 1p9a_G Platelet glycoprotein I 98.3 9.1E-07 3.1E-11 78.0 5.7 68 5-75 97-178 (290)
53 2xot_A Amphoterin-induced prot 98.3 7.6E-07 2.6E-11 80.3 5.3 74 4-77 84-171 (361)
54 4glp_A Monocyte differentiatio 98.3 9.6E-07 3.3E-11 77.4 5.8 71 6-76 143-231 (310)
55 1p9a_G Platelet glycoprotein I 98.3 9E-07 3.1E-11 78.1 5.6 69 4-75 51-130 (290)
56 3zyi_A Leucine-rich repeat-con 98.2 9E-07 3.1E-11 81.5 5.6 72 3-77 94-179 (452)
57 3zyj_A Leucine-rich repeat-con 98.2 8.2E-07 2.8E-11 81.5 5.1 70 4-76 181-262 (440)
58 3v47_A TOLL-like receptor 5B a 98.2 9.4E-07 3.2E-11 80.0 5.3 71 4-77 295-379 (455)
59 1wwl_A Monocyte differentiatio 98.2 1.5E-06 5E-11 76.5 6.3 69 8-76 149-235 (312)
60 3zyj_A Leucine-rich repeat-con 98.2 9.5E-07 3.3E-11 81.1 5.2 72 3-77 83-168 (440)
61 2z80_A TOLL-like receptor 2, v 98.2 8.9E-07 3E-11 78.6 4.6 71 4-76 72-156 (353)
62 2ca6_A RAN GTPase-activating p 98.2 4.1E-07 1.4E-11 81.7 2.3 74 3-76 211-310 (386)
63 2z62_A TOLL-like receptor 4, v 98.2 1.4E-06 4.8E-11 74.5 5.4 47 10-56 30-90 (276)
64 1ozn_A Reticulon 4 receptor; N 98.2 1.5E-06 5E-11 74.7 5.6 72 3-77 100-185 (285)
65 1dce_A Protein (RAB geranylger 98.2 1.4E-06 4.8E-11 85.2 6.0 69 4-76 459-540 (567)
66 3zyi_A Leucine-rich repeat-con 98.2 1.5E-06 5E-11 80.1 5.4 71 4-77 192-274 (452)
67 2z66_A Variable lymphocyte rec 98.2 2.3E-06 7.8E-11 74.0 5.9 69 5-76 147-230 (306)
68 1ds9_A Outer arm dynein; leuci 98.1 1E-07 3.4E-12 78.7 -2.8 69 3-76 43-122 (198)
69 2z62_A TOLL-like receptor 4, v 98.1 2.6E-06 8.7E-11 72.9 5.7 70 4-76 48-131 (276)
70 2z66_A Variable lymphocyte rec 98.1 1.7E-06 5.9E-11 74.8 4.7 54 4-57 171-238 (306)
71 1xku_A Decorin; proteoglycan, 98.1 4.7E-06 1.6E-10 73.0 7.4 71 4-77 72-153 (330)
72 4fcg_A Uncharacterized protein 98.1 2.2E-06 7.4E-11 76.7 5.3 69 5-76 180-260 (328)
73 3o53_A Protein LRIM1, AGAP0063 98.1 2.1E-06 7.2E-11 75.6 4.9 52 6-57 142-206 (317)
74 3o6n_A APL1; leucine-rich repe 98.1 2.2E-06 7.5E-11 76.8 5.0 69 5-76 66-148 (390)
75 3o6n_A APL1; leucine-rich repe 98.1 4.6E-06 1.6E-10 74.8 6.9 70 4-76 89-172 (390)
76 2ca6_A RAN GTPase-activating p 98.1 2.9E-06 9.8E-11 76.2 5.4 74 4-77 183-282 (386)
77 3v47_A TOLL-like receptor 5B a 98.1 2.9E-06 9.9E-11 76.8 5.5 66 8-76 275-354 (455)
78 2id5_A Lingo-1, leucine rich r 98.1 2.8E-06 9.7E-11 77.9 5.5 54 4-57 52-119 (477)
79 2ft3_A Biglycan; proteoglycan, 98.1 3.2E-06 1.1E-10 74.4 5.5 70 4-76 74-154 (332)
80 3bz5_A Internalin-J, INLJ; leu 98.1 4E-06 1.4E-10 79.0 6.4 53 4-57 60-121 (457)
81 2z7x_B TOLL-like receptor 1, v 98.1 2.5E-06 8.5E-11 79.0 4.7 73 3-77 40-123 (520)
82 4fcg_A Uncharacterized protein 98.1 2.1E-06 7.2E-11 76.8 4.0 69 4-76 123-213 (328)
83 2id5_A Lingo-1, leucine rich r 98.1 3.1E-06 1.1E-10 77.7 5.2 54 4-57 76-143 (477)
84 2z81_A CD282 antigen, TOLL-lik 98.1 2.6E-06 8.8E-11 79.0 4.6 72 3-76 45-130 (549)
85 2z80_A TOLL-like receptor 2, v 98.1 6.2E-06 2.1E-10 73.2 6.9 67 8-77 52-132 (353)
86 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 3.8E-06 1.3E-10 79.3 5.8 73 3-77 71-154 (562)
87 3o53_A Protein LRIM1, AGAP0063 98.0 1.9E-06 6.4E-11 76.0 3.2 53 4-56 54-113 (317)
88 1o6v_A Internalin A; bacterial 98.0 5.7E-06 2E-10 76.5 6.2 54 4-57 283-346 (466)
89 2z63_A TOLL-like receptor 4, v 98.0 4.7E-06 1.6E-10 77.1 5.5 33 6-38 50-84 (570)
90 3oja_B Anopheles plasmodium-re 98.0 3.7E-06 1.3E-10 80.7 5.0 69 5-76 72-154 (597)
91 3vq2_A TLR4, TOLL-like recepto 98.0 4.5E-06 1.6E-10 78.5 5.4 68 5-76 77-160 (606)
92 4b8c_D Glucose-repressible alc 98.0 2.8E-06 9.5E-11 85.2 4.2 53 4-56 266-330 (727)
93 3bz5_A Internalin-J, INLJ; leu 98.0 3.7E-06 1.3E-10 79.2 4.8 68 4-77 38-114 (457)
94 3oja_B Anopheles plasmodium-re 98.0 7.3E-06 2.5E-10 78.7 6.8 69 3-75 249-330 (597)
95 3t6q_A CD180 antigen; protein- 98.0 4.7E-06 1.6E-10 78.4 5.3 53 4-56 53-119 (606)
96 3vq2_A TLR4, TOLL-like recepto 98.0 8E-06 2.8E-10 76.8 6.7 70 4-76 444-528 (606)
97 2ifg_A High affinity nerve gro 98.0 1.3E-05 4.5E-10 70.7 7.7 57 3-59 51-120 (347)
98 3oja_A Leucine-rich immune mol 98.0 4.4E-06 1.5E-10 79.1 4.9 66 6-75 167-243 (487)
99 1ogq_A PGIP-2, polygalacturona 98.0 3.7E-06 1.3E-10 74.3 3.5 70 3-76 71-156 (313)
100 1ziw_A TOLL-like receptor 3; i 97.9 1.3E-05 4.4E-10 76.7 7.2 69 4-75 532-615 (680)
101 4glp_A Monocyte differentiatio 97.9 7.7E-06 2.6E-10 71.6 4.8 55 5-59 194-268 (310)
102 2z81_A CD282 antigen, TOLL-lik 97.9 1.1E-05 3.8E-10 74.7 6.1 52 6-57 449-512 (549)
103 2z7x_B TOLL-like receptor 1, v 97.9 8.3E-06 2.8E-10 75.5 5.1 67 3-76 64-145 (520)
104 3oja_A Leucine-rich immune mol 97.9 9.9E-06 3.4E-10 76.7 5.6 37 3-39 53-89 (487)
105 2z63_A TOLL-like receptor 4, v 97.9 1.1E-05 3.7E-10 74.7 5.7 70 4-76 417-501 (570)
106 1ogq_A PGIP-2, polygalacturona 97.9 7.9E-06 2.7E-10 72.2 4.4 68 4-76 194-275 (313)
107 1wwl_A Monocyte differentiatio 97.9 7.8E-06 2.7E-10 71.9 4.2 53 5-57 198-268 (312)
108 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 1.2E-05 4.2E-10 75.8 5.6 64 8-77 52-129 (562)
109 2xwt_C Thyrotropin receptor; s 97.9 6.5E-06 2.2E-10 69.1 3.4 56 4-59 51-122 (239)
110 2ft3_A Biglycan; proteoglycan, 97.9 1.3E-05 4.5E-10 70.4 5.1 66 8-77 193-272 (332)
111 2ast_B S-phase kinase-associat 97.8 1.6E-05 5.3E-10 69.1 5.3 72 4-77 89-176 (336)
112 3j0a_A TOLL-like receptor 5; m 97.8 1.4E-05 4.6E-10 80.2 5.3 72 3-76 68-155 (844)
113 1ziw_A TOLL-like receptor 3; i 97.8 1.1E-05 3.6E-10 77.3 4.2 33 6-38 71-105 (680)
114 4b8c_D Glucose-repressible alc 97.8 1.4E-05 4.9E-10 80.1 5.2 70 3-76 242-323 (727)
115 3t6q_A CD180 antigen; protein- 97.8 3.3E-05 1.1E-09 72.7 7.3 53 4-56 77-143 (606)
116 3rgz_A Protein brassinosteroid 97.8 1.9E-05 6.5E-10 78.3 5.9 76 2-77 94-186 (768)
117 1xku_A Decorin; proteoglycan, 97.8 2.5E-05 8.4E-10 68.5 6.0 66 8-77 192-271 (330)
118 2ast_B S-phase kinase-associat 97.8 1.6E-05 5.4E-10 69.1 4.5 73 4-78 114-204 (336)
119 2xwt_C Thyrotropin receptor; s 97.8 1.4E-05 4.9E-10 67.0 3.9 56 4-59 101-173 (239)
120 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.5E-10 69.4 2.7 34 40-73 137-171 (176)
121 4eco_A Uncharacterized protein 97.7 3.9E-05 1.3E-09 74.7 6.1 54 6-59 511-583 (636)
122 4eco_A Uncharacterized protein 97.7 5E-05 1.7E-09 74.0 6.8 75 3-77 201-313 (636)
123 1jl5_A Outer protein YOPM; leu 97.6 6.1E-05 2.1E-09 70.9 6.5 65 8-77 131-203 (454)
124 4ecn_A Leucine-rich repeat pro 97.6 5E-05 1.7E-09 78.9 6.2 75 3-77 443-556 (876)
125 3rgz_A Protein brassinosteroid 97.5 8.4E-05 2.9E-09 73.7 6.2 68 5-75 175-253 (768)
126 4ecn_A Leucine-rich repeat pro 97.5 8.5E-05 2.9E-09 77.2 6.1 32 8-39 728-762 (876)
127 3g06_A SSPH2 (leucine-rich rep 97.5 0.00013 4.6E-09 72.5 6.7 63 8-76 221-291 (622)
128 3j0a_A TOLL-like receptor 5; m 97.5 0.00013 4.4E-09 73.1 6.6 34 5-38 287-322 (844)
129 3g06_A SSPH2 (leucine-rich rep 97.5 0.00011 3.9E-09 73.0 6.0 28 9-38 62-89 (622)
130 4ay9_X Follicle-stimulating ho 97.5 4.6E-05 1.6E-09 68.2 2.9 32 8-39 30-63 (350)
131 1z7x_W Ribonuclease inhibitor; 97.5 5.6E-05 1.9E-09 68.3 3.2 72 5-76 25-120 (461)
132 1io0_A Tropomodulin; LRR prote 97.4 9.9E-05 3.4E-09 61.4 4.0 52 5-56 33-107 (185)
133 3goz_A Leucine-rich repeat-con 97.4 0.00016 5.4E-09 64.9 5.5 70 8-77 22-117 (362)
134 3cvr_A Invasion plasmid antige 97.4 0.00018 6.3E-09 71.1 6.3 15 43-57 161-175 (571)
135 3goz_A Leucine-rich repeat-con 97.4 0.00022 7.5E-09 63.9 5.9 32 8-39 80-118 (362)
136 3un9_A NLR family member X1; l 97.4 0.00013 4.5E-09 67.4 4.5 70 7-76 154-246 (372)
137 1io0_A Tropomodulin; LRR prote 97.3 0.00012 4.2E-09 60.8 3.7 75 4-78 61-160 (185)
138 1jl5_A Outer protein YOPM; leu 97.3 0.00023 7.9E-09 67.0 5.9 63 9-76 174-244 (454)
139 3cvr_A Invasion plasmid antige 97.3 0.00024 8.2E-09 70.3 6.2 59 8-75 80-146 (571)
140 1z7x_W Ribonuclease inhibitor; 97.3 0.00031 1.1E-08 63.4 6.4 69 9-77 86-178 (461)
141 3sb4_A Hypothetical leucine ri 97.1 0.00038 1.3E-08 61.5 4.5 65 7-75 225-303 (329)
142 3un9_A NLR family member X1; l 97.0 0.00029 1E-08 65.1 3.3 55 4-58 179-255 (372)
143 3ogk_B Coronatine-insensitive 97.0 0.00021 7.1E-09 66.7 2.1 69 5-75 433-519 (592)
144 2p1m_B Transport inhibitor res 96.9 0.00029 9.9E-09 65.6 2.4 65 7-73 455-535 (594)
145 3e4g_A ATP synthase subunit S, 96.9 0.00055 1.9E-08 59.3 3.4 70 9-80 62-150 (176)
146 4ay9_X Follicle-stimulating ho 96.8 0.00024 8.2E-09 63.6 0.9 65 8-75 154-232 (350)
147 3ogk_B Coronatine-insensitive 96.7 0.0013 4.5E-08 61.3 5.1 71 5-77 217-326 (592)
148 2p1m_B Transport inhibitor res 96.7 0.0017 5.8E-08 60.5 5.5 67 6-75 154-241 (594)
149 3rfe_A Platelet glycoprotein I 96.5 0.0016 5.3E-08 52.5 3.5 37 9-55 32-68 (130)
150 3sb4_A Hypothetical leucine ri 96.5 0.0021 7.3E-08 56.7 4.6 69 4-76 246-328 (329)
151 2ra8_A Uncharacterized protein 95.7 0.0029 9.8E-08 59.0 1.2 32 6-38 170-201 (362)
152 3rw6_A Nuclear RNA export fact 95.1 0.011 3.8E-07 53.6 3.1 35 5-39 193-229 (267)
153 2ra8_A Uncharacterized protein 95.1 0.0076 2.6E-07 56.2 2.0 76 6-83 217-323 (362)
154 1pgv_A TMD-1, tropomodulin TMD 94.1 0.045 1.6E-06 48.0 4.4 68 7-76 40-133 (197)
155 1pgv_A TMD-1, tropomodulin TMD 92.7 0.14 4.9E-06 44.8 5.3 80 5-84 67-172 (197)
156 4fdw_A Leucine rich hypothetic 91.8 0.18 6.3E-06 47.0 5.3 54 5-59 268-339 (401)
157 4gt6_A Cell surface protein; l 89.6 0.41 1.4E-05 43.3 5.3 67 5-76 285-364 (394)
158 4h09_A Hypothetical leucine ri 89.1 0.33 1.1E-05 43.2 4.2 33 6-38 284-318 (379)
159 4fdw_A Leucine rich hypothetic 88.2 0.52 1.8E-05 44.0 5.1 28 9-37 249-278 (401)
160 4fs7_A Uncharacterized protein 86.5 0.57 1.9E-05 42.4 4.1 67 5-76 294-373 (394)
161 3rfe_A Platelet glycoprotein I 84.7 0.81 2.8E-05 36.5 3.8 49 11-75 11-61 (130)
162 4fs7_A Uncharacterized protein 84.0 0.89 3.1E-05 41.1 4.2 47 5-52 317-376 (394)
163 4gt6_A Cell surface protein; l 82.7 1.8 6E-05 39.1 5.6 48 5-53 308-368 (394)
164 4h09_A Hypothetical leucine ri 79.7 2.2 7.4E-05 37.9 5.0 67 5-75 237-316 (379)
165 2lz0_A Uncharacterized protein 29.1 46 0.0016 25.6 3.4 37 18-54 6-56 (100)
No 1
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.27 E-value=3e-12 Score=116.46 Aligned_cols=78 Identities=17% Similarity=0.320 Sum_probs=69.6
Q ss_pred cccccCCeeeccCcccccccCCC----CCCCCCeEeccc----------CCC--CCceEEccCCCccC----ccchHHHH
Q 021827 5 TSVVSLRALILNDNEIVSICKLD----QMKELNTLGMDS----------YFF--NLNNLNLQGNPVAE----YDKLAKKV 64 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe----~L~nL~TLdLS~----------~L~--nLrtLnLeGNPIak----~e~YrrKI 64 (307)
..|++|++|+|++|+|+.|.+|+ .|++|++|+||+ .|. +|+.|+|.||||+. .+.|+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45889999999999999999877 799999999997 333 89999999999986 46899999
Q ss_pred HHhCCCCceecCcccChh
Q 021827 65 KTLLPNLCIFNARPIDRI 82 (307)
Q Consensus 65 ~a~LP~L~yLDarpV~e~ 82 (307)
+..||+|++||+.+|.+.
T Consensus 247 l~~~P~L~~LDg~~v~p~ 264 (267)
T 3rw6_A 247 RERFPKLLRLDGHELPPP 264 (267)
T ss_dssp HHHCTTCCEESSCBCCCC
T ss_pred HHHCcccCeECCcCCCCC
Confidence 999999999999998753
No 2
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=2.6e-11 Score=98.47 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=70.2
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHh
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL 67 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~ 67 (307)
.+..|++|+.|+|++|+|+.+.. +..|++|++|+|++ .+++|++|+|.+||++..+.|+.++...
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~ 138 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 138 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence 45566677777777777776653 36677777777764 5789999999999999999999999999
Q ss_pred CCCCceecCcccChhhhhhhcc
Q 021827 68 LPNLCIFNARPIDRITKNEKDN 89 (307)
Q Consensus 68 LP~L~yLDarpV~e~tRe~a~~ 89 (307)
+|+|++||...+...+|..+..
T Consensus 139 l~~L~~Ld~~~n~~~~~~~~~~ 160 (176)
T 1a9n_A 139 VPQVRVLDFQKVKLKERQEAEK 160 (176)
T ss_dssp CTTCSEETTEECCHHHHHHHHH
T ss_pred CCccceeCCCcCCHHHHHHHHH
Confidence 9999999999999999887743
No 3
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=7.7e-12 Score=103.39 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=69.4
Q ss_pred ccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCc-------cchHHHHH
Q 021827 6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEY-------DKLAKKVK 65 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~-------e~YrrKI~ 65 (307)
.+++|+.|+|++|+|+.++.+..|++|++|+|++ .+++|++|+|.+||+... ..|+..+.
T Consensus 91 ~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 3467777777777777777777777888888875 689999999999999776 77888889
Q ss_pred HhCCCCceecCcccChhhhhhh
Q 021827 66 TLLPNLCIFNARPIDRITKNEK 87 (307)
Q Consensus 66 a~LP~L~yLDarpV~e~tRe~a 87 (307)
..+|+|++||+.+|.+.+|..|
T Consensus 171 ~~l~~L~~Ld~~~i~~~e~~~a 192 (198)
T 1ds9_A 171 KRLPNLKKLDGMPVDVDEREQA 192 (198)
T ss_dssp HHCSSCSEECCGGGTTTTTTHH
T ss_pred HhCCCcEEECCcccCHHHHHHH
Confidence 9999999999999999998876
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=4.6e-10 Score=89.71 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=54.6
Q ss_pred ccccccCCeeeccCccccc-ccCC-CCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 4 VTSVVSLRALILNDNEIVS-ICKL-DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Iss-IegL-e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
+..|++|+.|+|++|+|+. ++.+ ..|++|++|+|++ .|++|++|+|.+|++...+.|+..+...+
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 3444555555555555554 3332 2255555555553 56888999999999998888888888899
Q ss_pred CCCceecCcccChhhh
Q 021827 69 PNLCIFNARPIDRITK 84 (307)
Q Consensus 69 P~L~yLDarpV~e~tR 84 (307)
|+|++||.......++
T Consensus 147 ~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 147 PQLTYLDGYDREDQEA 162 (168)
T ss_dssp SSCCEETTEETTSCBC
T ss_pred ccCcEecCCCCChhhc
Confidence 9999999877655443
No 5
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=9e-10 Score=86.40 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=46.3
Q ss_pred cccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------------------------------CCCCCceE
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------------------------------YFFNLNNL 47 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------------------------------~L~nLrtL 47 (307)
..|++|+.|+|++|.|+.+..+..|++|++|+|++ .+++|++|
T Consensus 39 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 44555555555555555554455555555555553 55677777
Q ss_pred EccCCCccCccchHHHHHHhCCCCceecC
Q 021827 48 NLQGNPVAEYDKLAKKVKTLLPNLCIFNA 76 (307)
Q Consensus 48 nLeGNPIak~e~YrrKI~a~LP~L~yLDa 76 (307)
+|.+|+++..+.|+..+...+|+|++||.
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 77777777777777777777777777774
No 6
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=3e-09 Score=103.93 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=66.1
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
.+..|++|+.|+|++|+|+.|+.+..|++|++|+|++ .|++|++|+|.+||++..+.+...+...||
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred hhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 5678889999999999999999899999999999986 578999999999999999988889999999
Q ss_pred CCceec
Q 021827 70 NLCIFN 75 (307)
Q Consensus 70 ~L~yLD 75 (307)
+|++||
T Consensus 561 ~L~~L~ 566 (567)
T 1dce_A 561 SVSSIL 566 (567)
T ss_dssp TCSEEE
T ss_pred ccCccC
Confidence 999986
No 7
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.75 E-value=9.9e-10 Score=95.70 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=61.0
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
.+..|++|+.|+|++|+|+.++.+..|++|++|+|++ .|++|+.|+|.+|||...+.++.....++|.|.
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~~~~~~~l~~~~~l~ 202 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCCEECCSEEEEECCCB
T ss_pred hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCccccccceEECCeee
Confidence 4566777778888888887777777777788887775 567788888888888776554443344567788
Q ss_pred eecCcccChhhhhhh
Q 021827 73 IFNARPIDRITKNEK 87 (307)
Q Consensus 73 yLDarpV~e~tRe~a 87 (307)
.+|+.+|....+...
T Consensus 203 ~l~~~~i~~~~i~~~ 217 (263)
T 1xeu_A 203 DPDGRWISPYYISNG 217 (263)
T ss_dssp CTTSCBCCCSEEGGG
T ss_pred cCCCCCcCCCEecCC
Confidence 888888776665544
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.73 E-value=9.6e-09 Score=87.31 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=56.7
Q ss_pred cccccCCeeeccCccccccc-CCCCCCCCCeEeccc------------CCCCCceEEccCCCccC----ccchHHHHHHh
Q 021827 5 TSVVSLRALILNDNEIVSIC-KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE----YDKLAKKVKTL 67 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIe-gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak----~e~YrrKI~a~ 67 (307)
..|.+|+.|+|++|+|+.|+ .+..|++|++|+|++ .+++|++|+|.|||+.- ...|+.++...
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~ 188 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH 188 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence 45566666666666666663 356666777777764 56889999999999853 34467777788
Q ss_pred CCCCceecCcccChhhhh
Q 021827 68 LPNLCIFNARPIDRITKN 85 (307)
Q Consensus 68 LP~L~yLDarpV~e~tRe 85 (307)
.+.+..+|+.+|....+.
T Consensus 189 ~~~~~~~~g~~v~~~~~~ 206 (229)
T 3e6j_A 189 TSIAMRWDGKAVNDPDSA 206 (229)
T ss_dssp GGGEEEESSSEEECTTCS
T ss_pred ccccccccCcccCCCCcC
Confidence 888889998887655443
No 9
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=2.9e-08 Score=81.87 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=55.0
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccc----hHHHHH
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDK----LAKKVK 65 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~----YrrKI~ 65 (307)
+..|.+|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|+.|+|.+||+.-... ++.++.
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~ 132 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence 5678888888888888888876 67888888888886 56888999999999875543 344554
Q ss_pred HhCCCCceecCccc
Q 021827 66 TLLPNLCIFNARPI 79 (307)
Q Consensus 66 a~LP~L~yLDarpV 79 (307)
.....+..+++.++
T Consensus 133 ~~~~~~~~~~~~~~ 146 (174)
T 2r9u_A 133 DHTSIVMRWDGKAV 146 (174)
T ss_dssp HCGGGEEEESSSEE
T ss_pred hccccccccccccc
Confidence 44444544555444
No 10
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.63 E-value=3.6e-08 Score=82.32 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=42.6
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|.|+.|.. +..|++|++|+|++ .|++|++|+|.+|.|...+. .+...+|
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~ 126 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---GAFNDLS 126 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---TTTTTCT
T ss_pred hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---hhhhcCc
Confidence 4556666777777777766664 66666677777664 45666667777776665543 2233456
Q ss_pred CCceec
Q 021827 70 NLCIFN 75 (307)
Q Consensus 70 ~L~yLD 75 (307)
+|++|+
T Consensus 127 ~L~~L~ 132 (193)
T 2wfh_A 127 ALSHLA 132 (193)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 666654
No 11
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.61 E-value=5.3e-09 Score=92.11 Aligned_cols=68 Identities=26% Similarity=0.421 Sum_probs=42.9
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
.+..|++|+.|+|++|+|+.+..+..|++|++|+|++ .|++|+.|+|.+|++...+. ...+|+|+
T Consensus 129 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-----l~~l~~L~ 203 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAGLKNLD 203 (291)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCS
T ss_pred hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-----hccCCCCC
Confidence 4556667777777777777776667777777777764 45666666666666655432 23456666
Q ss_pred eec
Q 021827 73 IFN 75 (307)
Q Consensus 73 yLD 75 (307)
+|+
T Consensus 204 ~L~ 206 (291)
T 1h6t_A 204 VLE 206 (291)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 12
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.59 E-value=6.2e-08 Score=79.89 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=39.5
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
++..|++|+.|+|++|.|+.+..+..|++|++|+|++ .|++|++|+|.+|.+..... .....+|+
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~ 137 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL---TKINTLPK 137 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH---HHHTTCSS
T ss_pred HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH---HHHhhCCC
Confidence 3455556666666666666665666666666666654 44566666666666654221 22334566
Q ss_pred CceecC
Q 021827 71 LCIFNA 76 (307)
Q Consensus 71 L~yLDa 76 (307)
|++|+-
T Consensus 138 L~~L~L 143 (197)
T 4ezg_A 138 VNSIDL 143 (197)
T ss_dssp CCEEEC
T ss_pred CCEEEc
Confidence 666553
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.55 E-value=1.1e-07 Score=78.41 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=59.8
Q ss_pred ccccccccCCeeeccCccccc--ccCCCCCCCCCeEeccc------------CCCCCceEEccCCC-ccCccchHHHHHH
Q 021827 2 DDVTSVVSLRALILNDNEIVS--ICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNP-VAEYDKLAKKVKT 66 (307)
Q Consensus 2 DeL~~L~nL~aL~LS~N~Iss--IegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNP-Iak~e~YrrKI~a 66 (307)
..+..|++|+.|+|++|.|+. +..+..|++|++|+|++ .|++|+.|+|.+|+ +...+. ..
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-----l~ 156 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-----LK 156 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-----GG
T ss_pred hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-----hc
Confidence 356788999999999999996 77799999999999996 77999999999998 766642 46
Q ss_pred hCCCCceecCc
Q 021827 67 LLPNLCIFNAR 77 (307)
Q Consensus 67 ~LP~L~yLDar 77 (307)
.+|+|++|+..
T Consensus 157 ~l~~L~~L~l~ 167 (197)
T 4ezg_A 157 TLPELKSLNIQ 167 (197)
T ss_dssp GCSSCCEEECT
T ss_pred CCCCCCEEECC
Confidence 78999998853
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.54 E-value=1.1e-07 Score=83.28 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=27.8
Q ss_pred cccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccC
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak 56 (307)
..+++|+.|+|++|.|+.+..+..+++|++|+|++ .+++|+.|+|.+|++..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCG
T ss_pred hcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCC
Confidence 44555555555555555555555555555555554 34455555555555543
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.53 E-value=8.9e-08 Score=81.08 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=54.0
Q ss_pred cccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 3 DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
.+..|.+|+.|+|++|+|+.| ..+..|++|++|+|++ .+++|++|+|.+|.|..... .....+
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l 127 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV---DAFQDL 127 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTC
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH---HHcCCC
Confidence 356678888888888888888 4488888888888885 46788888888888877643 233457
Q ss_pred CCCceecCc
Q 021827 69 PNLCIFNAR 77 (307)
Q Consensus 69 P~L~yLDar 77 (307)
|+|++||-.
T Consensus 128 ~~L~~L~L~ 136 (220)
T 2v9t_B 128 HNLNLLSLY 136 (220)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEECC
Confidence 888887643
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.51 E-value=8.8e-08 Score=79.33 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=43.0
Q ss_pred ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|+|+.+. .+..|++|++|+|++ .+++|++|+|.+|.|..... .....+|
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~ 126 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP---GSFEHLN 126 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT---TSSTTCT
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH---HHhhcCC
Confidence 456667777777777777663 366677777777765 45667777777777665422 1223456
Q ss_pred CCceec
Q 021827 70 NLCIFN 75 (307)
Q Consensus 70 ~L~yLD 75 (307)
+|++|+
T Consensus 127 ~L~~L~ 132 (192)
T 1w8a_A 127 SLTSLN 132 (192)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 666665
No 17
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.50 E-value=1.1e-07 Score=83.80 Aligned_cols=67 Identities=22% Similarity=0.410 Sum_probs=37.3
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
+..|++|+.|+|++|.|+.++.+..|++|++|+|++ .+++|+.|+|.+|.+...+ ....+|+|++
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~ 160 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDT 160 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSE
T ss_pred cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-----hhccCCCCCE
Confidence 445566666666666666666666666666666654 4455555555555555442 1234455555
Q ss_pred ec
Q 021827 74 FN 75 (307)
Q Consensus 74 LD 75 (307)
|+
T Consensus 161 L~ 162 (291)
T 1h6t_A 161 LS 162 (291)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.50 E-value=1.8e-07 Score=79.44 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=52.2
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|++|+|.+|.|...+.. ...+|
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~~~l~ 135 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG----IERLT 135 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT----GGGCT
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc----cccCC
Confidence 5667788888888888888765 67788888888885 567888888888888866542 26678
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+-
T Consensus 136 ~L~~L~L 142 (229)
T 3e6j_A 136 HLTHLAL 142 (229)
T ss_dssp TCSEEEC
T ss_pred CCCEEEC
Confidence 8888874
No 19
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.50 E-value=1.2e-07 Score=77.43 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=33.9
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~ 57 (307)
+..|.+|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|+.|+|.+||+.-.
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 4456666666666666666655 45666666666664 456666666666666433
No 20
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.50 E-value=1.3e-07 Score=76.29 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=32.2
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|+|+.+.. +..+++|++|+|++ .+++|+.|+|.+|.+...+. .+...+|+|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN---GVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH---HHhhCCcccCE
Confidence 345555555555555543 44555555555553 34455555555555554433 12233455555
Q ss_pred ec
Q 021827 74 FN 75 (307)
Q Consensus 74 LD 75 (307)
|+
T Consensus 105 L~ 106 (177)
T 2o6r_A 105 LA 106 (177)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.49 E-value=1.3e-07 Score=79.99 Aligned_cols=67 Identities=24% Similarity=0.286 Sum_probs=48.1
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|+|+.|.. +..|++|+.|+|++ .|++|++|+|.+|.|...+. .+...+|+|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK---SLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH---hHccCCCCCCE
Confidence 467888888888887773 77778888888875 56778888888888876654 23345777777
Q ss_pred ecCc
Q 021827 74 FNAR 77 (307)
Q Consensus 74 LDar 77 (307)
|+-.
T Consensus 109 L~L~ 112 (220)
T 2v9t_B 109 LLLN 112 (220)
T ss_dssp EECC
T ss_pred EECC
Confidence 7643
No 22
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.48 E-value=1.3e-07 Score=76.67 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=44.0
Q ss_pred ccccc-cCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 4 VTSVV-SLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 4 L~~L~-nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
+..+. +|+.|+|++|.|+.++.+..|++|++|+|++ .|++|++|+|.+|.|...+.+ .....+|+
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~l~~l~~ 114 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL--DPLASLKS 114 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGG--GGGGGCTT
T ss_pred hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhh--HhhhcCCC
Confidence 33444 6777777777777776677777777777765 456677777777777655441 12335666
Q ss_pred CceecC
Q 021827 71 LCIFNA 76 (307)
Q Consensus 71 L~yLDa 76 (307)
|++|+.
T Consensus 115 L~~L~l 120 (176)
T 1a9n_A 115 LTYLCI 120 (176)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 766653
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.48 E-value=1.3e-07 Score=81.65 Aligned_cols=71 Identities=25% Similarity=0.319 Sum_probs=40.7
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
.+..|++|+.|+|++|.|+.+..+..|++|++|+|++ .+++|++|+|.+|.+...+. .....+|+
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~ 134 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD---GVFDKLTN 134 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTT
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH---HHhccCCC
Confidence 3455566666666666666666666666666666664 34566666666666654433 12234566
Q ss_pred CceecC
Q 021827 71 LCIFNA 76 (307)
Q Consensus 71 L~yLDa 76 (307)
|++|+.
T Consensus 135 L~~L~L 140 (272)
T 3rfs_A 135 LTYLNL 140 (272)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 666553
No 24
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=79.65 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=53.7
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|++|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|++|+|.+|.|..... .....+|
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~ 129 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN---DSFIGLS 129 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT---TSSTTCT
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH---hHcCCCc
Confidence 5678888888888888888875 88888888888885 56888888888888877643 1223578
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+-
T Consensus 130 ~L~~L~L 136 (220)
T 2v70_A 130 SVRLLSL 136 (220)
T ss_dssp TCSEEEC
T ss_pred cCCEEEC
Confidence 8888774
No 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.46 E-value=1.7e-07 Score=76.61 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=56.9
Q ss_pred cccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
..+|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|++|+|.+|.|...+. .+...+|+|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~ 105 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR---GAFDNLKSLT 105 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH---HHhcCCCCCC
Confidence 3679999999999999954 89999999999996 67899999999999998765 3345688998
Q ss_pred eecC
Q 021827 73 IFNA 76 (307)
Q Consensus 73 yLDa 76 (307)
+|+-
T Consensus 106 ~L~L 109 (170)
T 3g39_A 106 HIWL 109 (170)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8863
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.45 E-value=1.2e-07 Score=87.72 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=31.3
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCcc
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYD 58 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e 58 (307)
+..|++|+.|+|++|+|+.|+. +..|++|++|+|++ .|++|++|+|.+|.+...+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 3455666666666666666643 55666666666664 3455555555555555443
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.44 E-value=1.8e-07 Score=79.28 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=49.5
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|+|+.+.. +..|++|++|+|++ .|++|++|+|.+|.|..... .....+|
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~ 153 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---GAFDTLH 153 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---TTTTTCT
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH---HHhcCCC
Confidence 5667788888888888887766 77788888888875 55778888888887776533 2234567
Q ss_pred CCceec
Q 021827 70 NLCIFN 75 (307)
Q Consensus 70 ~L~yLD 75 (307)
+|++|+
T Consensus 154 ~L~~L~ 159 (220)
T 2v70_A 154 SLSTLN 159 (220)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 777665
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.44 E-value=2.2e-07 Score=76.59 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=53.4
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..+.+|+.|+|++|+|+.|.. +..+++|++|+|++ .+++|++|+|.+|.+...+. .....+|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~ 124 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD---GVFDKLT 124 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH---hHhccCC
Confidence 4567888888888888888876 67888888888885 56788888888888876654 2334578
Q ss_pred CCceecCc
Q 021827 70 NLCIFNAR 77 (307)
Q Consensus 70 ~L~yLDar 77 (307)
+|++|+-.
T Consensus 125 ~L~~L~l~ 132 (208)
T 2o6s_A 125 QLKDLRLY 132 (208)
T ss_dssp TCCEEECC
T ss_pred cCCEEECC
Confidence 88877753
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.44 E-value=2.6e-07 Score=80.83 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=45.5
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
.+..+++|+.|+|++|.|+.+..+..|++|++|+|++ .+++|++|+|.+|.+...+. ...+|+|+
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-----~~~l~~L~ 135 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-----LANLTKMY 135 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-----GTTCTTCC
T ss_pred hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-----hccCCcee
Confidence 4556667777777777777766666777777777764 55677777777777766544 34566666
Q ss_pred eecC
Q 021827 73 IFNA 76 (307)
Q Consensus 73 yLDa 76 (307)
+|+.
T Consensus 136 ~L~l 139 (347)
T 4fmz_A 136 SLNL 139 (347)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6664
No 30
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.43 E-value=2e-07 Score=76.81 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=56.5
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|++|+|.+|.|...+. .....||+|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR---GAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH---HHhccccCCCE
Confidence 679999999999999954 89999999999996 57899999999999997765 33456899998
Q ss_pred ecC
Q 021827 74 FNA 76 (307)
Q Consensus 74 LDa 76 (307)
|+-
T Consensus 110 L~L 112 (174)
T 2r9u_A 110 IYL 112 (174)
T ss_dssp EEC
T ss_pred EEe
Confidence 874
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.41 E-value=3.5e-07 Score=80.93 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=38.2
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
.+..|++|+.|+|++|.|+.+..+..|++|++|+|++ .+++|++|+|.+|.+...+. ...+|+|+
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~ 132 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-----LAGLSNLQ 132 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-----GTTCTTCC
T ss_pred hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-----hcCCCCCC
Confidence 3455566666666666666666666666666666664 44555555555555554432 23445555
Q ss_pred eec
Q 021827 73 IFN 75 (307)
Q Consensus 73 yLD 75 (307)
+|+
T Consensus 133 ~L~ 135 (308)
T 1h6u_A 133 VLY 135 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 32
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.41 E-value=2.8e-07 Score=78.49 Aligned_cols=70 Identities=26% Similarity=0.364 Sum_probs=46.2
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|++|+.|+|++|+|+.+.. +..|++|++|+|++ .+++|++|+|.+|.+...+. .+...+|
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~ 131 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---GVFDRLT 131 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh---hHhccCC
Confidence 4566777777777777777665 66777777777775 45677777777777765543 2223466
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+-
T Consensus 132 ~L~~L~L 138 (251)
T 3m19_A 132 KLKELRL 138 (251)
T ss_dssp TCCEEEC
T ss_pred cccEEEC
Confidence 6666653
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.40 E-value=3.4e-07 Score=81.01 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=36.6
Q ss_pred ccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827 6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 75 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD 75 (307)
.|.+|+.|+|++|.|+.++.+..|++|++|+|++ .|++|+.|+|.+|.+...+. ...+|+|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG-----GTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh-----hcCCCCCCEEE
Confidence 3455666666666666665555566666666654 44556666666666555432 23455555555
Q ss_pred C
Q 021827 76 A 76 (307)
Q Consensus 76 a 76 (307)
.
T Consensus 114 l 114 (308)
T 1h6u_A 114 L 114 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.40 E-value=2.9e-07 Score=78.36 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=51.2
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|+|+.+.. +..|++|++|+|++ .+++|+.|+|.+|.+...+. .....+|
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~ 155 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---GAFDKLT 155 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---HHcCcCc
Confidence 5667788888888888887763 67788888888875 46778888888888876554 2234567
Q ss_pred CCceecCc
Q 021827 70 NLCIFNAR 77 (307)
Q Consensus 70 ~L~yLDar 77 (307)
+|++||-.
T Consensus 156 ~L~~L~L~ 163 (251)
T 3m19_A 156 NLQTLSLS 163 (251)
T ss_dssp TCCEEECC
T ss_pred CCCEEECC
Confidence 77777743
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.40 E-value=3.1e-07 Score=75.65 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=49.1
Q ss_pred cccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
..+|+.|+|++|+|+.+.. +..+++|++|+|++ .+++|++|+|.+|.+...+. .+...+|+|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN---GVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH---hHhcCccCCC
Confidence 3568888888888887776 67788888888875 46788888888888876554 2334577888
Q ss_pred eecC
Q 021827 73 IFNA 76 (307)
Q Consensus 73 yLDa 76 (307)
+|+-
T Consensus 104 ~L~L 107 (208)
T 2o6s_A 104 ELAL 107 (208)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7774
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.39 E-value=3.1e-07 Score=82.79 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=31.1
Q ss_pred ccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827 6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~ 57 (307)
.|.+|+.|+|++|+|+.|.. +..|++|+.|+|++ .|++|+.|+|.+|.|...
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence 55666666666666666653 66666666666664 345555555555555543
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.38 E-value=3.8e-07 Score=78.75 Aligned_cols=72 Identities=28% Similarity=0.357 Sum_probs=48.4
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
.+..|++|+.|+|++|.|+.+.. +..|++|++|+|++ .+++|++|+|.+|.+...+. .+...+
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l 156 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---GVFDKL 156 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH---HHhccC
Confidence 45667777777777777777766 67777777777775 45677777777777765543 223446
Q ss_pred CCCceecCc
Q 021827 69 PNLCIFNAR 77 (307)
Q Consensus 69 P~L~yLDar 77 (307)
|+|++|+..
T Consensus 157 ~~L~~L~l~ 165 (272)
T 3rfs_A 157 TNLTELDLS 165 (272)
T ss_dssp TTCCEEECC
T ss_pred ccCCEEECC
Confidence 666666643
No 38
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=2.9e-07 Score=80.15 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=27.3
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~ 57 (307)
+..|++|+.|+|++|+|+.++.+.. ++|++|+|++ .|++|+.|+|.+|.+...
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC
T ss_pred hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC
Confidence 3455555555555555555555444 5555555553 344455555555544443
No 39
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=2.8e-07 Score=81.39 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=31.1
Q ss_pred ccccccCCeeeccC-cccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCcc
Q 021827 4 VTSVVSLRALILND-NEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYD 58 (307)
Q Consensus 4 L~~L~nL~aL~LS~-N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e 58 (307)
|..+++|+.|+|++ |.|+.|.. |..|++|+.|+|++ .|++|+.|+|.+|.+...+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 34455566666664 66666553 55666666666664 4455555555555555443
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.35 E-value=7.6e-07 Score=76.50 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=38.0
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|++|+.|+|++|+|+.+.. +..+++|++|+|++ .+++|+.|+|.+|.+..... .....+|
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~ 201 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP---HAFRDLG 201 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCT
T ss_pred hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH---hHccCcc
Confidence 3455666666666666666554 55666666666664 34556666666665554421 1122345
Q ss_pred CCceec
Q 021827 70 NLCIFN 75 (307)
Q Consensus 70 ~L~yLD 75 (307)
+|++|+
T Consensus 202 ~L~~L~ 207 (285)
T 1ozn_A 202 RLMTLY 207 (285)
T ss_dssp TCCEEE
T ss_pred cccEee
Confidence 555554
No 41
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.34 E-value=4.2e-07 Score=89.85 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=12.9
Q ss_pred cccCCeeeccCcccccccCCCCCCCCCeEecc
Q 021827 7 VVSLRALILNDNEIVSICKLDQMKELNTLGMD 38 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS 38 (307)
|.+|+.|+|++|+|+.|+.|..|++|+.|+|+
T Consensus 108 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLG 139 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCTTCSEEECC
T ss_pred CCCCCEEEecCCCCCCCccccCCCccCEEECC
Confidence 33344444444444444333344444444443
No 42
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.33 E-value=9.5e-08 Score=94.41 Aligned_cols=70 Identities=26% Similarity=0.413 Sum_probs=46.4
Q ss_pred ccccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 2 DDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 2 DeL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
..+..|++|+.|+|++|+|+.+..|..|++|+.|+|++ .|++|+.|+|.+|+|...+. +..||+|
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L 199 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAGLKNL 199 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTC
T ss_pred ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChH-----HccCCCC
Confidence 34566777777777777777777777777777777775 45666777777776665432 3345666
Q ss_pred ceecC
Q 021827 72 CIFNA 76 (307)
Q Consensus 72 ~yLDa 76 (307)
+.|+.
T Consensus 200 ~~L~L 204 (605)
T 1m9s_A 200 DVLEL 204 (605)
T ss_dssp SEEEC
T ss_pred CEEEc
Confidence 66553
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.33 E-value=4.2e-07 Score=84.10 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=57.0
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+++.|+|++|+|+.|.. +..|++|++|+|++ .|++|++|+|.+|.+...+. ....-|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~---~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG---GGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH---HHhcCCCCCCE
Confidence 379999999999999975 99999999999996 67999999999999988765 23456788888
Q ss_pred ecCc
Q 021827 74 FNAR 77 (307)
Q Consensus 74 LDar 77 (307)
|+-.
T Consensus 129 L~Ls 132 (635)
T 4g8a_A 129 LVAV 132 (635)
T ss_dssp EECT
T ss_pred EECC
Confidence 8743
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.32 E-value=5.7e-07 Score=77.34 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=55.7
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|+|+.+.. +..|++|++|+|++ .+++|+.|+|.+|.+...+. .....+|
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~ 181 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE---GAFDKLT 181 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCT
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh---hHhccCC
Confidence 4667889999999999988876 78888999999886 56888899999998887655 2234578
Q ss_pred CCceecCc
Q 021827 70 NLCIFNAR 77 (307)
Q Consensus 70 ~L~yLDar 77 (307)
+|++|+-.
T Consensus 182 ~L~~L~L~ 189 (270)
T 2o6q_A 182 ELKTLKLD 189 (270)
T ss_dssp TCCEEECC
T ss_pred CcCEEECC
Confidence 88888754
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.31 E-value=6.7e-07 Score=76.89 Aligned_cols=70 Identities=27% Similarity=0.399 Sum_probs=38.5
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|++|+.|+|++|.|+.|.. +..|++|++|+|++ .+++|++|+|.+|.+...+. .....+|
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~ 133 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLT 133 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH---HHhCcCc
Confidence 4455566666666666665554 45566666666653 34556666666666555433 1223455
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+-
T Consensus 134 ~L~~L~L 140 (270)
T 2o6q_A 134 KLTYLSL 140 (270)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 5555553
No 46
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.30 E-value=9.6e-07 Score=70.39 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=45.2
Q ss_pred cccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
..|++|+.|+|++|.|+.+..+..|++|++|+|++ .|++|++|+|.+|.+...+.. .....+|+|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGG--GGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhH--HHHhcCCCCC
Confidence 55667777777777777776677777777777765 367777777777777664421 1234567777
Q ss_pred eecC
Q 021827 73 IFNA 76 (307)
Q Consensus 73 yLDa 76 (307)
+|+.
T Consensus 124 ~L~l 127 (168)
T 2ell_A 124 SLDL 127 (168)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6664
No 47
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.30 E-value=1.7e-06 Score=67.72 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=58.7
Q ss_pred ccccCCeeeccCcccc--cccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 6 SVVSLRALILNDNEIV--SICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 6 ~L~nL~aL~LS~N~Is--sIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
...+|+.|+|++|.|+ .|+. +..+++|++|+|++ .+++|++|+|.+|.+.... ..+...+|+|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGL---EVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCT---HHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchH---HHHhhhCCCCC
Confidence 4578999999999999 8887 58999999999996 6799999999999998842 23556699999
Q ss_pred eecCc
Q 021827 73 IFNAR 77 (307)
Q Consensus 73 yLDar 77 (307)
+|+-.
T Consensus 92 ~L~ls 96 (149)
T 2je0_A 92 HLNLS 96 (149)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 99854
No 48
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.28 E-value=1.8e-06 Score=71.41 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=50.0
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCcc
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYD 58 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e 58 (307)
.+..|.+|+.|+|++|+|+.+.. +..|++|++|+|++ .|++|++|+|.+||+.-.-
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 46788999999999999999987 88999999999996 6789999999999997543
No 49
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=1.3e-06 Score=70.36 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=52.5
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..+.+|+.|+|++|+|+.|.. +..|++|++|+|++ .+++|++|+|.+|.+...+. .+...+|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~ 124 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLT 124 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCT
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH---HHhcCCc
Confidence 4667888888888888888876 67888888888885 56788888888888876654 2334577
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+-
T Consensus 125 ~L~~L~l 131 (177)
T 2o6r_A 125 SLQKIWL 131 (177)
T ss_dssp TCCEEEC
T ss_pred ccCEEEe
Confidence 7777654
No 50
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.27 E-value=9.5e-07 Score=73.72 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=48.5
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak 56 (307)
+..|.+|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|+.|+|.+||+.-
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6788999999999999999986 89999999999996 57899999999999954
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.26 E-value=1.1e-06 Score=81.39 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=51.0
Q ss_pred ccccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 2 DDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 2 DeL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
.++..|.+|+.|+|++|.|+.+..+..|++|++|+|++ .|++|++|+|.+|.+...+. ...+|+|
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L 136 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-----LKNLTNL 136 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GTTCTTC
T ss_pred cchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-----HcCCCCC
Confidence 45667778888888888888777777788888888875 56777777877777776654 3456777
Q ss_pred ceecC
Q 021827 72 CIFNA 76 (307)
Q Consensus 72 ~yLDa 76 (307)
++|+-
T Consensus 137 ~~L~l 141 (466)
T 1o6v_A 137 NRLEL 141 (466)
T ss_dssp SEEEE
T ss_pred CEEEC
Confidence 76664
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.26 E-value=9.1e-07 Score=78.03 Aligned_cols=68 Identities=24% Similarity=0.215 Sum_probs=35.6
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
..|++|+.|+|++|+|+.+.. +..|++|++|+|++ .+++|+.|+|.+|.+...+. .+...+|+
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~ 173 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNGLEN 173 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT---TTTTTCTT
T ss_pred ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH---HHhcCcCC
Confidence 344555555555555555532 55555555555553 34555566666665554433 22334555
Q ss_pred Cceec
Q 021827 71 LCIFN 75 (307)
Q Consensus 71 L~yLD 75 (307)
|++|+
T Consensus 174 L~~L~ 178 (290)
T 1p9a_G 174 LDTLL 178 (290)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 65555
No 53
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.26 E-value=7.6e-07 Score=80.27 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=55.6
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|+|+.|.. +..|++|++|+|++ .|++|+.|+|.+|.|...+...-.-...+|
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT
T ss_pred ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC
Confidence 5678889999999999988876 78888999999886 668889999999988877653211124588
Q ss_pred CCceecCc
Q 021827 70 NLCIFNAR 77 (307)
Q Consensus 70 ~L~yLDar 77 (307)
+|++||-.
T Consensus 164 ~L~~L~L~ 171 (361)
T 2xot_A 164 KLMLLDLS 171 (361)
T ss_dssp TCCEEECC
T ss_pred cCCEEECC
Confidence 88888753
No 54
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.25 E-value=9.6e-07 Score=77.40 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=45.5
Q ss_pred ccccCCeeeccCcccccccC--CCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccchHHHHHHh
Q 021827 6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKLAKKVKTL 67 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~YrrKI~a~ 67 (307)
.+.+|+.|+|++|+|+.+.. +..|++|++|+|++ .|++|++|+|.+|.+...+.....+...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 46667777777777766542 55677777777764 3566777777777776554433344556
Q ss_pred CCCCceecC
Q 021827 68 LPNLCIFNA 76 (307)
Q Consensus 68 LP~L~yLDa 76 (307)
+|+|++||-
T Consensus 223 l~~L~~L~L 231 (310)
T 4glp_A 223 GVQPHSLDL 231 (310)
T ss_dssp TCCCSSEEC
T ss_pred CCCCCEEEC
Confidence 677777764
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.25 E-value=9e-07 Score=78.08 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=41.8
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
+..|++|+.|+|++|+|+.|.....+++|++|+|++ .+++|+.|+|.+|.+...+. .....+|+|+
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~---~~~~~l~~L~ 127 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQ 127 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH---HHHcCCCCCC
Confidence 455666777777777777766666666666666664 44566666666666655432 1223455565
Q ss_pred eec
Q 021827 73 IFN 75 (307)
Q Consensus 73 yLD 75 (307)
+|+
T Consensus 128 ~L~ 130 (290)
T 1p9a_G 128 ELY 130 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.24 E-value=9e-07 Score=81.55 Aligned_cols=72 Identities=25% Similarity=0.342 Sum_probs=56.1
Q ss_pred cccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 3 DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
.+..|.+|+.|+|++|.|+.|. .+..|++|++|+|++ .|++|++|+|.+|++...+. .....+
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l 170 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS---YAFNRV 170 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT---TTTTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH---hHHhcC
Confidence 4567888999999999998886 388888899999886 47889999999999887654 234457
Q ss_pred CCCceecCc
Q 021827 69 PNLCIFNAR 77 (307)
Q Consensus 69 P~L~yLDar 77 (307)
|+|++|+-.
T Consensus 171 ~~L~~L~l~ 179 (452)
T 3zyi_A 171 PSLMRLDLG 179 (452)
T ss_dssp TTCCEEECC
T ss_pred CcccEEeCC
Confidence 777777754
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.23 E-value=8.2e-07 Score=81.53 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=52.8
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
+..|.+|+.|+|++|.|+.|+.+..+++|++|+|++ .+++|+.|+|.+|.+..... .....+|+|
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L 257 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER---NAFDNLQSL 257 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT---TSSTTCTTC
T ss_pred hhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh---hhhcCCCCC
Confidence 556788888888888888888888888888888885 56778888888887776543 223456777
Q ss_pred ceecC
Q 021827 72 CIFNA 76 (307)
Q Consensus 72 ~yLDa 76 (307)
++||-
T Consensus 258 ~~L~L 262 (440)
T 3zyj_A 258 VEINL 262 (440)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 77764
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.23 E-value=9.4e-07 Score=79.96 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=52.4
Q ss_pred ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..+++|+.|+|++|+|+.+. .+..|++|++|+|++ .+++|++|+|.+|.+..... .....+|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~ 371 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD---QSFLGLP 371 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT---TTTTTCT
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh---hhccccc
Confidence 567788888888888888775 477888888888885 56888888888888866532 1234478
Q ss_pred CCceecCc
Q 021827 70 NLCIFNAR 77 (307)
Q Consensus 70 ~L~yLDar 77 (307)
+|++|+-.
T Consensus 372 ~L~~L~L~ 379 (455)
T 3v47_A 372 NLKELALD 379 (455)
T ss_dssp TCCEEECC
T ss_pred cccEEECC
Confidence 88887753
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.23 E-value=1.5e-06 Score=76.52 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=47.4
Q ss_pred ccCCeeeccCccccccc--CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
++|+.|+|++|+|+.+. .+..|++|++|+|++ .+++|++|+|.+|.+...+.....+...+|
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 66666777777666665 366777777777774 457777788888877765554455556677
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++||-
T Consensus 229 ~L~~L~L 235 (312)
T 1wwl_A 229 QLQGLDL 235 (312)
T ss_dssp CCSEEEC
T ss_pred CCCEEEC
Confidence 8887774
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.22 E-value=9.5e-07 Score=81.09 Aligned_cols=72 Identities=25% Similarity=0.355 Sum_probs=54.7
Q ss_pred cccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 3 DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
.+..|.+|+.|+|++|.|+.|. .+..|++|++|+|++ .|++|++|+|.+|++...+. .....+
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l 159 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS---YAFNRI 159 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT---TTTTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH---HHhhhC
Confidence 4567888888888888888876 378888888888885 56888889999998876654 233456
Q ss_pred CCCceecCc
Q 021827 69 PNLCIFNAR 77 (307)
Q Consensus 69 P~L~yLDar 77 (307)
|+|++|+-.
T Consensus 160 ~~L~~L~l~ 168 (440)
T 3zyj_A 160 PSLRRLDLG 168 (440)
T ss_dssp TTCCEEECC
T ss_pred cccCEeCCC
Confidence 777777753
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.21 E-value=8.9e-07 Score=78.56 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=36.5
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|++|+.|+|++|+|+.+.. +..|++|++|+|++ .+++|++|+|.+|++...+. ......+|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~~l~ 149 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--TSLFSHLT 149 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--SCSCTTCT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc--hhhhccCC
Confidence 4445555555555555555532 55555555555553 34555666666665554332 01123355
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+.
T Consensus 150 ~L~~L~l 156 (353)
T 2z80_A 150 KLQILRV 156 (353)
T ss_dssp TCCEEEE
T ss_pred CCcEEEC
Confidence 5555553
No 62
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.20 E-value=4.1e-07 Score=81.70 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=48.5
Q ss_pred cccccccCCeeeccCcccc-----cccC-CCCCCCCCeEeccc----------------C--CCCCceEEccCCCccCc-
Q 021827 3 DVTSVVSLRALILNDNEIV-----SICK-LDQMKELNTLGMDS----------------Y--FFNLNNLNLQGNPVAEY- 57 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~Is-----sIeg-Le~L~nL~TLdLS~----------------~--L~nLrtLnLeGNPIak~- 57 (307)
.+..+++|+.|+|++|.|+ .|.. |..+++|++|+|++ . +++|++|+|.+|+|...
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 4567778888888888873 3433 66777778888875 1 67777788888777652
Q ss_pred -cchHHHHHHhCCCCceecC
Q 021827 58 -DKLAKKVKTLLPNLCIFNA 76 (307)
Q Consensus 58 -e~YrrKI~a~LP~L~yLDa 76 (307)
..+...+...+|+|++|+-
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHhcCCCceEEEc
Confidence 1222333355777777763
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.19 E-value=1.4e-06 Score=74.52 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827 10 LRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 10 L~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak 56 (307)
|+.|+|++|+|+.+. .+..+++|++|+|++ .+++|++|+|.+|++..
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 555555555555444 244455555555543 33445555555555443
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.19 E-value=1.5e-06 Score=74.70 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
.+..|++|+.|+|++|+|+.+.. +..|++|++|+|++ .+++|++|+|.+|.+...+. .....+
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l 176 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGL 176 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT---TTTTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH---HHhcCc
Confidence 35667888888888888888754 77888888888885 56788888888888876554 223457
Q ss_pred CCCceecCc
Q 021827 69 PNLCIFNAR 77 (307)
Q Consensus 69 P~L~yLDar 77 (307)
|+|++|+-.
T Consensus 177 ~~L~~L~l~ 185 (285)
T 1ozn_A 177 HSLDRLLLH 185 (285)
T ss_dssp TTCCEEECC
T ss_pred cccCEEECC
Confidence 888887753
No 65
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=1.4e-06 Score=85.21 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=41.8
Q ss_pred ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc----------CCCCCceEEccCCCccCc--cchHHHHHHhCCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY--DKLAKKVKTLLPN 70 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~--e~YrrKI~a~LP~ 70 (307)
+..|++|+.|+|++|+|+.|+. +..|++|++|+|++ .|++|++|+|.+|.|... +. .+..||+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~----~l~~l~~ 534 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ----PLVSCPR 534 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTG----GGGGCTT
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcH----HHhcCCC
Confidence 4556666666666666666643 66666666666664 456666666666666655 22 2344666
Q ss_pred CceecC
Q 021827 71 LCIFNA 76 (307)
Q Consensus 71 L~yLDa 76 (307)
|++|+-
T Consensus 535 L~~L~L 540 (567)
T 1dce_A 535 LVLLNL 540 (567)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 666653
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.17 E-value=1.5e-06 Score=80.13 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=54.7
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
+..|.+|+.|+|++|.|+.++.+..|++|++|+|++ .+++|+.|+|.+|.+..... .....+|+|
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L 268 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER---NAFDGLASL 268 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT---TTTTTCTTC
T ss_pred ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH---HHhcCCCCC
Confidence 556788888888888888888888888888888885 66888888888888876543 223457888
Q ss_pred ceecCc
Q 021827 72 CIFNAR 77 (307)
Q Consensus 72 ~yLDar 77 (307)
++||-.
T Consensus 269 ~~L~L~ 274 (452)
T 3zyi_A 269 VELNLA 274 (452)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 887743
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.15 E-value=2.3e-06 Score=74.03 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=38.5
Q ss_pred cccccCCeeeccCccccc--cc-CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 5 TSVVSLRALILNDNEIVS--IC-KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~Iss--Ie-gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
..+++|+.|+|++|.|+. +. .+..+++|++|+|++ .+++|+.|+|.+|.+...+.. ....+|
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~ 223 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLN 223 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG---GGTTCT
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh---hccCcc
Confidence 445556666666666653 22 255566666666654 446666666666666554431 123456
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++||-
T Consensus 224 ~L~~L~L 230 (306)
T 2z66_A 224 SLQVLDY 230 (306)
T ss_dssp TCCEEEC
T ss_pred cCCEeEC
Confidence 6666654
No 68
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.14 E-value=1e-07 Score=78.68 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=50.8
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
.+..|++|+.|+|++|+|+.|+.+..|++|++|+|++ .+++|++|+|.+|.+...+. ...+|+|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~-----~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHH-----HHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCc-----cccCCCC
Confidence 3567788999999999999888888888999999886 34677777777777766432 3345666
Q ss_pred ceecC
Q 021827 72 CIFNA 76 (307)
Q Consensus 72 ~yLDa 76 (307)
++|+-
T Consensus 118 ~~L~l 122 (198)
T 1ds9_A 118 RVLYM 122 (198)
T ss_dssp SEEEE
T ss_pred CEEEC
Confidence 66653
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.13 E-value=2.6e-06 Score=72.88 Aligned_cols=70 Identities=23% Similarity=0.200 Sum_probs=42.3
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..+++|+.|+|++|+|+.|.. +..|++|++|+|++ .+++|++|+|.+|.+...+.. ....+|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~ 124 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLK 124 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC---CCTTCT
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch---hcccCC
Confidence 4556677777777777776664 66677777777764 445666666666666554331 123455
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+-
T Consensus 125 ~L~~L~l 131 (276)
T 2z62_A 125 TLKELNV 131 (276)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 6665553
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.13 E-value=1.7e-06 Score=74.78 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=37.2
Q ss_pred ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~ 57 (307)
+..+++|+.|+|++|+|+.+. .+..+++|++|+|++ .+++|+.|+|.+|++...
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 456677777777777777762 366777777777775 456777777777777654
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.13 E-value=4.7e-06 Score=73.03 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=49.3
Q ss_pred ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
+..|++|++|+|++|.|+.+. .+..|++|++|+|++ .+++|++|+|.+|.+..... .....+|+|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK---SVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCH---HHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCH---hHhcCCcccc
Confidence 556777777777777777772 377777777777775 33677777777777776543 3455677888
Q ss_pred eecCc
Q 021827 73 IFNAR 77 (307)
Q Consensus 73 yLDar 77 (307)
+|+..
T Consensus 149 ~L~l~ 153 (330)
T 1xku_A 149 VVELG 153 (330)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77643
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.12 E-value=2.2e-06 Score=76.72 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=37.1
Q ss_pred cccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 5 TSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
..|++|+.|+|++|+|+.|+. +..|++|++|+|++ .|++|+.|+|.+|++..... .....+|+|+
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~ 256 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP---PIFGGRAPLK 256 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC---CCTTCCCCCC
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH---HHhcCCCCCC
Confidence 346666666666666665543 55566666666654 44556666666655544321 0122345555
Q ss_pred eecC
Q 021827 73 IFNA 76 (307)
Q Consensus 73 yLDa 76 (307)
+|+-
T Consensus 257 ~L~L 260 (328)
T 4fcg_A 257 RLIL 260 (328)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5543
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.11 E-value=2.1e-06 Score=75.64 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=24.9
Q ss_pred ccccCCeeeccCcccccccC--C-CCCCCCCeEeccc----------CCCCCceEEccCCCccCc
Q 021827 6 SVVSLRALILNDNEIVSICK--L-DQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg--L-e~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~ 57 (307)
.+++|+.|+|++|.|+.+.. + ..|++|++|+|++ .+++|++|+|.+|.+...
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc
Confidence 34455555555555554321 2 2345555555553 245555555555555443
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.11 E-value=2.2e-06 Score=76.83 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=44.4
Q ss_pred cccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 5 TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
..|++|+.|+|++|.|+.+. .+..|++|++|+|++ .+++|++|+|.+|.+...+. .+...+|+
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~ 142 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPK 142 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTT
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH---HHhcCCCC
Confidence 45667777777777777664 366777777777764 45667777777777765544 22344666
Q ss_pred CceecC
Q 021827 71 LCIFNA 76 (307)
Q Consensus 71 L~yLDa 76 (307)
|++|+-
T Consensus 143 L~~L~L 148 (390)
T 3o6n_A 143 LTTLSM 148 (390)
T ss_dssp CCEEEC
T ss_pred CcEEEC
Confidence 666664
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.10 E-value=4.6e-06 Score=74.79 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|++|.|+.+.. +..|++|++|+|++ .+++|++|+|.+|++...+. .....+|
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~ 165 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED---DTFQATT 165 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT---TTTSSCT
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh---hhccCCC
Confidence 4556667777777777766643 56666677777664 35666666666666655433 1223456
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++|+-
T Consensus 166 ~L~~L~l 172 (390)
T 3o6n_A 166 SLQNLQL 172 (390)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 6666553
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.09 E-value=2.9e-06 Score=76.21 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=46.9
Q ss_pred ccccccCCeeeccCcccc------ccc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccch
Q 021827 4 VTSVVSLRALILNDNEIV------SIC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKL 60 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Is------sIe-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~Y 60 (307)
+..+++|+.|+|++|+|+ .++ .|..+++|++|+|++ .+++|+.|+|.+|+|......
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 445677777777777777 344 566777777777775 557777777777777654221
Q ss_pred -HHHHHHh--CCCCceecCc
Q 021827 61 -AKKVKTL--LPNLCIFNAR 77 (307)
Q Consensus 61 -rrKI~a~--LP~L~yLDar 77 (307)
....+.. +|+|++|+-.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECC
T ss_pred HHHHHHhhccCCCeEEEECc
Confidence 1122222 6777777643
No 77
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.09 E-value=2.9e-06 Score=76.75 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=37.2
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|.|+.+.. +..+++|++|+|++ .+++|++|+|.+|.+..... .....+|+|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS---RMFENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG---GGGTTCTTCCE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh---hHhcCcccCCE
Confidence 456666666666665432 55666666666664 44666666666666654422 12234566666
Q ss_pred ecC
Q 021827 74 FNA 76 (307)
Q Consensus 74 LDa 76 (307)
||-
T Consensus 352 L~L 354 (455)
T 3v47_A 352 LDL 354 (455)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.09 E-value=2.8e-06 Score=77.93 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=29.0
Q ss_pred ccccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~ 57 (307)
+..|.+|+.|+|++|.|+.+. .+..|++|++|+|++ .+++|++|+|.+|.+...
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence 445555666666666665552 255555555555553 335555555555555443
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.08 E-value=3.2e-06 Score=74.37 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=42.2
Q ss_pred ccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCc
Q 021827 4 VTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
+..|++|+.|+|++|+|+.+ ..+..|++|++|+|++ .+++|++|+|.+|.+...+. .....+|+|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPK---GVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCS---GGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCH---hHhCCCccCC
Confidence 45566666666666666666 2366666666666664 22566666777666665443 2234567777
Q ss_pred eecC
Q 021827 73 IFNA 76 (307)
Q Consensus 73 yLDa 76 (307)
+|+.
T Consensus 151 ~L~l 154 (332)
T 2ft3_A 151 CIEM 154 (332)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7664
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.08 E-value=4e-06 Score=78.98 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=28.6
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~ 57 (307)
+..|++|+.|+|++|+|+.|+ +..|++|++|+|++ .|++|++|+|.+|.+...
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee
Confidence 344555555555555555553 55555555555554 345555555555555543
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.07 E-value=2.5e-06 Score=78.99 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=53.2
Q ss_pred cccccccCCeeeccCccccccc--CCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
.+..|++|+.|+|++|+|+.+. .+..|++|++|+|++ .+++|++|+|.+|.+...+- ......|++|
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L 117 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPI--CKEFGNMSQL 117 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCC--CGGGGGCTTC
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCccccccc--hhhhccCCcc
Confidence 3567788888888888888873 488888888888886 56888888888888876321 0123457888
Q ss_pred ceecCc
Q 021827 72 CIFNAR 77 (307)
Q Consensus 72 ~yLDar 77 (307)
++||-.
T Consensus 118 ~~L~L~ 123 (520)
T 2z7x_B 118 KFLGLS 123 (520)
T ss_dssp CEEEEE
T ss_pred eEEEec
Confidence 877743
No 82
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.07 E-value=2.1e-06 Score=76.80 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=38.6
Q ss_pred ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc------------C---------CCCCceEEccCCCccCccchH
Q 021827 4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS------------Y---------FFNLNNLNLQGNPVAEYDKLA 61 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~------------~---------L~nLrtLnLeGNPIak~e~Yr 61 (307)
+..|.+|+.|+|++|.|+.|+. +..|++|++|+|++ . +++|++|+|.+|.+...+..
T Consensus 123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~- 201 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS- 201 (328)
T ss_dssp GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-
T ss_pred HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-
Confidence 4455556666666666655542 55555566666553 1 56666666666666644431
Q ss_pred HHHHHhCCCCceecC
Q 021827 62 KKVKTLLPNLCIFNA 76 (307)
Q Consensus 62 rKI~a~LP~L~yLDa 76 (307)
...+|+|++|+-
T Consensus 202 ---l~~l~~L~~L~L 213 (328)
T 4fcg_A 202 ---IANLQNLKSLKI 213 (328)
T ss_dssp ---GGGCTTCCEEEE
T ss_pred ---hcCCCCCCEEEc
Confidence 344566666653
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.06 E-value=3.1e-06 Score=77.68 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=36.3
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~ 57 (307)
+..|.+|+.|+|++|+|+.|.. +..|++|++|+|++ .+++|+.|+|.+|.+...
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 4567777777777777777764 66777777777774 445666666666655443
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.06 E-value=2.6e-06 Score=78.99 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=47.4
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
.+..|++|++|+|++|+|+.+.. +..|++|++|+|++ .|++|++|+|.+|++...... .....+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh--hhhhcc
Confidence 35667777777777777777763 77777777777775 567777788877777643110 122346
Q ss_pred CCCceecC
Q 021827 69 PNLCIFNA 76 (307)
Q Consensus 69 P~L~yLDa 76 (307)
|+|++|+-
T Consensus 123 ~~L~~L~L 130 (549)
T 2z81_A 123 TNLQTLRI 130 (549)
T ss_dssp TTCCEEEE
T ss_pred CCccEEEC
Confidence 66666664
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.06 E-value=6.2e-06 Score=73.16 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=58.9
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|+|+.|.. +..|++|++|+|++ .+++|++|+|.+|.+...+. .....+|+|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH---HHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH---hHhCCCccCCE
Confidence 479999999999999987 99999999999996 66999999999999997665 44567999999
Q ss_pred ecCc
Q 021827 74 FNAR 77 (307)
Q Consensus 74 LDar 77 (307)
|+-.
T Consensus 129 L~L~ 132 (353)
T 2z80_A 129 LNLL 132 (353)
T ss_dssp EECT
T ss_pred EECC
Confidence 9864
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.06 E-value=3.8e-06 Score=79.34 Aligned_cols=73 Identities=23% Similarity=0.195 Sum_probs=53.8
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
.+..|++|+.|+|++|+|+.|.. +..|++|++|+|++ .+++|++|+|.+|.+...+. ......+++|
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L 148 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPV--CKEFGNLTKL 148 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCC--CGGGGGCTTC
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCc--hHhhcccCcc
Confidence 46677888888888888888743 78888888888886 56788888888888876431 0123457888
Q ss_pred ceecCc
Q 021827 72 CIFNAR 77 (307)
Q Consensus 72 ~yLDar 77 (307)
++|+-.
T Consensus 149 ~~L~L~ 154 (562)
T 3a79_B 149 TFLGLS 154 (562)
T ss_dssp CEEEEE
T ss_pred cEEecC
Confidence 887744
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.04 E-value=1.9e-06 Score=75.99 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=33.9
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc-------CCCCCceEEccCCCccC
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------~L~nLrtLnLeGNPIak 56 (307)
+..|++|+.|+|++|+|+.+..+..|++|++|+|++ .+++|++|+|.+|.+..
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~ 113 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE
T ss_pred hhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC
Confidence 456677777777777777666677777777777775 23444444444444443
No 88
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.02 E-value=5.7e-06 Score=76.48 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=31.4
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc----------CCCCCceEEccCCCccCc
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS----------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----------~L~nLrtLnLeGNPIak~ 57 (307)
+..+++|+.|+|++|+|+.+..+..|++|+.|+|++ .+++|+.|+|.+|++...
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 345556666666666666665566666666666654 445555555555555544
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.02 E-value=4.7e-06 Score=77.14 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=14.7
Q ss_pred ccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827 6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMD 38 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS 38 (307)
.|++|+.|+|++|+|+.|.. +..|++|++|+|+
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 34444444444444444432 4444444444444
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.02 E-value=3.7e-06 Score=80.71 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=41.3
Q ss_pred cccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 5 TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
..|++|+.|+|++|.|+.+. .+..|++|++|+|++ .|++|++|+|.+|.+...+. .+...+|+
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~ 148 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPK 148 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTT
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH---HHhccCCC
Confidence 34566666777776666665 366666666666664 45666666666666665443 22334566
Q ss_pred CceecC
Q 021827 71 LCIFNA 76 (307)
Q Consensus 71 L~yLDa 76 (307)
|++|+-
T Consensus 149 L~~L~L 154 (597)
T 3oja_B 149 LTTLSM 154 (597)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 666653
No 91
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.02 E-value=4.5e-06 Score=78.51 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=32.2
Q ss_pred cccccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc--cchHHHHHHhC
Q 021827 5 TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY--DKLAKKVKTLL 68 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~--e~YrrKI~a~L 68 (307)
..|.+|++|+|++|.|+.+. .+..|++|++|+|++ .+++|++|+|.+|.+... +. ....|
T Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l 152 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA----YFSNL 152 (606)
T ss_dssp TTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG----GGGTC
T ss_pred hchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH----hHhhc
Confidence 34444444555544444441 244444455554443 345555555555555431 22 22345
Q ss_pred CCCceecC
Q 021827 69 PNLCIFNA 76 (307)
Q Consensus 69 P~L~yLDa 76 (307)
|+|++|+-
T Consensus 153 ~~L~~L~L 160 (606)
T 3vq2_A 153 TNLVHVDL 160 (606)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEc
Confidence 66666653
No 92
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.01 E-value=2.8e-06 Score=85.19 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=33.8
Q ss_pred ccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccC
Q 021827 4 VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak 56 (307)
|..|.+|+.|+|++|.|+.|+. |..|++|++|+|++ .|++|++|+|.+|++..
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 4556666666666666666643 56666666666664 55667777777777664
No 93
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.01 E-value=3.7e-06 Score=79.19 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=60.2
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCCeEeccc---------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS---------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF 74 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~---------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL 74 (307)
+..|++|+.|+|++|.|+.++.+..|++|++|+|++ .+++|++|+|.+|.+...+ ...+|+|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD------VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC------CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee------cCCCCcCCEE
Confidence 467899999999999999999999999999999997 6799999999999998864 3568888888
Q ss_pred cCc
Q 021827 75 NAR 77 (307)
Q Consensus 75 Dar 77 (307)
|..
T Consensus 112 ~L~ 114 (457)
T 3bz5_A 112 NCD 114 (457)
T ss_dssp ECC
T ss_pred ECC
Confidence 754
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=7.3e-06 Score=78.71 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=48.1
Q ss_pred cccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 3 DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
.+..|++|+.|+|++|.|+.+ ..+..|++|++|+|++ .|++|+.|+|.+|++...+... ..+|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~l~ 324 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ----PQFD 324 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH----HHHT
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc----ccCC
Confidence 356677888888888888776 3477778888888875 4678888888888887665432 3345
Q ss_pred CCceec
Q 021827 70 NLCIFN 75 (307)
Q Consensus 70 ~L~yLD 75 (307)
+|++|+
T Consensus 325 ~L~~L~ 330 (597)
T 3oja_B 325 RLENLY 330 (597)
T ss_dssp TCSEEE
T ss_pred CCCEEE
Confidence 555554
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.00 E-value=4.7e-06 Score=78.39 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=30.6
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak 56 (307)
+..|++|++|+|++|+|+.|.. +..|++|++|+|++ .+++|++|+|.+|.+..
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 4555666666666666665532 56666666666664 34555555555555544
No 96
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.99 E-value=8e-06 Score=76.83 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=41.7
Q ss_pred ccccccCCeeeccCccccc--ccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 4 VTSVVSLRALILNDNEIVS--ICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Iss--Ieg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
+..|++|+.|+|++|.|+. ++. +..|++|++|+|++ .+++|++|+|.+|++..... .....+
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l 520 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS---SHYNQL 520 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG---GGTTTC
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH---HHccCC
Confidence 4556667777777777664 333 56666777777664 45666666666666665422 122345
Q ss_pred CCCceecC
Q 021827 69 PNLCIFNA 76 (307)
Q Consensus 69 P~L~yLDa 76 (307)
|+|++||-
T Consensus 521 ~~L~~L~l 528 (606)
T 3vq2_A 521 YSLSTLDC 528 (606)
T ss_dssp TTCCEEEC
T ss_pred CcCCEEEC
Confidence 66666553
No 97
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.99 E-value=1.3e-05 Score=70.68 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=48.6
Q ss_pred cccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827 3 DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~ 59 (307)
.+..|.+|+.|+|++|+|+.|.. +..|++|+.|+|++ ....|+.|+|.+||+.-.-.
T Consensus 51 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 46789999999999999999975 78999999999997 22339999999999976544
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.99 E-value=4.4e-06 Score=79.14 Aligned_cols=66 Identities=24% Similarity=0.204 Sum_probs=37.6
Q ss_pred ccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCcee
Q 021827 6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF 74 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yL 74 (307)
.|++|+.|+|++|.|+.+..+..|++|++|+|++ .+++|+.|+|.+|++...+.. ...+|+|++|
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L 242 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHF 242 (487)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT----CCCCTTCCEE
T ss_pred hCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh----hccCCCCCEE
Confidence 4566666666666666666665666666666664 345566666666665544331 2334555554
Q ss_pred c
Q 021827 75 N 75 (307)
Q Consensus 75 D 75 (307)
+
T Consensus 243 ~ 243 (487)
T 3oja_A 243 D 243 (487)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.96 E-value=3.7e-06 Score=74.33 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=39.4
Q ss_pred cccccccCCeeeccC-cccc-cccC-CCCCCCCCeEeccc------------CCCCCceEEccCCCccC-ccchHHHHHH
Q 021827 3 DVTSVVSLRALILND-NEIV-SICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE-YDKLAKKVKT 66 (307)
Q Consensus 3 eL~~L~nL~aL~LS~-N~Is-sIeg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak-~e~YrrKI~a 66 (307)
.+..|++|+.|+|++ |.|+ .|+. +..|++|++|+|++ .+++|++|+|.+|.+.. .+. ...
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~ 146 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SIS 146 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGG
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHh
Confidence 345566666666663 6555 3332 56666666666664 45666666666666653 222 123
Q ss_pred hCCCCceecC
Q 021827 67 LLPNLCIFNA 76 (307)
Q Consensus 67 ~LP~L~yLDa 76 (307)
.+|+|++|+-
T Consensus 147 ~l~~L~~L~L 156 (313)
T 1ogq_A 147 SLPNLVGITF 156 (313)
T ss_dssp GCTTCCEEEC
T ss_pred cCCCCCeEEC
Confidence 4566666653
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.95 E-value=1.3e-05 Score=76.72 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=40.5
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHH-hC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKT-LL 68 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a-~L 68 (307)
+..|.+|+.|+|++|+|+.|+. +..|++|++|+|++ .+++|+.|+|.+|.+...+. .... .+
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~ 608 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK---KVFGPAF 608 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH---HHHHHHH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh---hHhcccc
Confidence 3455666666666666666654 56666666666664 34666666666666665544 1222 45
Q ss_pred CCCceec
Q 021827 69 PNLCIFN 75 (307)
Q Consensus 69 P~L~yLD 75 (307)
|+|++++
T Consensus 609 ~~L~~l~ 615 (680)
T 1ziw_A 609 RNLTELD 615 (680)
T ss_dssp TTCSEEE
T ss_pred cccCEEE
Confidence 6666655
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.92 E-value=7.7e-06 Score=71.64 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=30.5
Q ss_pred cccccCCeeeccCcccccccC-----CCCCCCCCeEeccc------------C---CCCCceEEccCCCccCccc
Q 021827 5 TSVVSLRALILNDNEIVSICK-----LDQMKELNTLGMDS------------Y---FFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg-----Le~L~nL~TLdLS~------------~---L~nLrtLnLeGNPIak~e~ 59 (307)
..|++|++|+|++|+|+.+.. +..+++|++|+|++ . +++|++|+|.+|.+...+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence 345566666666666655544 24455666666654 1 1456666666666654433
No 102
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.92 E-value=1.1e-05 Score=74.71 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=40.4
Q ss_pred ccccCCeeeccCcccccccCCCCCCCCCeEeccc------------CCCCCceEEccCCCccCc
Q 021827 6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~ 57 (307)
.|++|+.|+|++|+|+.|+....+++|++|+|++ .+++|+.|+|.+||+.-.
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred cCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 5777888888888888887777788888888875 567788888888887544
No 103
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.91 E-value=8.3e-06 Score=75.48 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=56.8
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
.+..|++|+.|+|++|+|+.|+.. .|++|++|+|++ .|++|++|+|.+|.+... ....++
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~ 136 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------SVLPIA 136 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------GGGGGT
T ss_pred HhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------hccccc
Confidence 467899999999999999999988 999999999996 678999999999999762 234567
Q ss_pred CC--ceecC
Q 021827 70 NL--CIFNA 76 (307)
Q Consensus 70 ~L--~yLDa 76 (307)
+| ++|+-
T Consensus 137 ~L~L~~L~l 145 (520)
T 2z7x_B 137 HLNISKVLL 145 (520)
T ss_dssp TSCEEEEEE
T ss_pred cceeeEEEe
Confidence 77 77764
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.90 E-value=9.9e-06 Score=76.73 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=24.8
Q ss_pred cccccccCCeeeccCcccccccCCCCCCCCCeEeccc
Q 021827 3 DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 39 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~ 39 (307)
.+..|++|+.|+|++|.|+.+..+..|++|++|+|++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 89 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCS
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecC
Confidence 3456667777777777776655566777777777765
No 105
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=74.74 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLL 68 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~L 68 (307)
+..|++|+.|+|++|.|+.+.. +..|++|++|+|++ .+++|++|+|.+|.+..... .....+
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l 493 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---TAFNSL 493 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh---hhhhcc
Confidence 4566677777777777765432 56667777777764 45667777777776665422 112346
Q ss_pred CCCceecC
Q 021827 69 PNLCIFNA 76 (307)
Q Consensus 69 P~L~yLDa 76 (307)
|+|++|+-
T Consensus 494 ~~L~~L~l 501 (570)
T 2z63_A 494 SSLQVLNM 501 (570)
T ss_dssp TTCCEEEC
T ss_pred cCCCEEeC
Confidence 66666664
No 106
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.89 E-value=7.9e-06 Score=72.24 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=41.4
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccC-ccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAE-YDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak-~e~YrrKI~a~LP 69 (307)
+..+. |+.|+|++|.|+.+.. +..+++|++|+|++ .+++|+.|+|.+|.+.. .+. ....+|
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~ 268 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLK 268 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG----GGGGCT
T ss_pred HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh----HHhcCc
Confidence 34444 7777777777764322 56677777777765 45677777777777763 232 234566
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|++||-
T Consensus 269 ~L~~L~L 275 (313)
T 1ogq_A 269 FLHSLNV 275 (313)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 7766653
No 107
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.88 E-value=7.8e-06 Score=71.88 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=26.9
Q ss_pred cccccCCeeeccCcccccccCC-----CCCCCCCeEeccc-------------CCCCCceEEccCCCccCc
Q 021827 5 TSVVSLRALILNDNEIVSICKL-----DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEY 57 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegL-----e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~ 57 (307)
..+++|+.|+|++|+|+.+..+ ..|++|++|+|++ .+++|++|+|.+|.+...
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 4455555556655555533321 2345555555553 234555555555555543
No 108
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.87 E-value=1.2e-05 Score=75.82 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=57.4
Q ss_pred ccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|.|+.+. .+..|++|++|+|++ .|++|++|+|.+|.+...+.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~------~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC------PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC------CCTTCSE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc------ccccCCE
Confidence 68999999999999997 599999999999996 679999999999999987764 6999999
Q ss_pred ecCc
Q 021827 74 FNAR 77 (307)
Q Consensus 74 LDar 77 (307)
||-.
T Consensus 126 L~Ls 129 (562)
T 3a79_B 126 LDLS 129 (562)
T ss_dssp EECC
T ss_pred EECC
Confidence 9854
No 109
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.87 E-value=6.5e-06 Score=69.11 Aligned_cols=56 Identities=4% Similarity=0.131 Sum_probs=34.0
Q ss_pred ccccccCCeeeccCcc-cccccC--CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccc
Q 021827 4 VTSVVSLRALILNDNE-IVSICK--LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~-IssIeg--Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~ 59 (307)
+..|++|+.|+|++|. |+.|.. +..|++|++|+|++ .+++|++|+|.+|++...+.
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc
Confidence 3456666666666664 666653 55666666666652 44566666666666655443
No 110
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.85 E-value=1.3e-05 Score=70.43 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=51.1
Q ss_pred ccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|.|+.+. .+..+++|++|+|++ .+++|+.|+|.+|.+...+.. ...+|+|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~ 268 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG----LPDLKLLQV 268 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT----GGGCTTCCE
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh----hhcCccCCE
Confidence 47888888888888775 478888888888885 568888888888888876653 356888888
Q ss_pred ecCc
Q 021827 74 FNAR 77 (307)
Q Consensus 74 LDar 77 (307)
|+-.
T Consensus 269 L~l~ 272 (332)
T 2ft3_A 269 VYLH 272 (332)
T ss_dssp EECC
T ss_pred EECC
Confidence 8753
No 111
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.84 E-value=1.6e-05 Score=69.09 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=49.8
Q ss_pred ccccccCCeeeccCccccc--ccC-CCCCCCCCeEeccc------------CCCCCceEEccCCC-ccCccchHHHHHHh
Q 021827 4 VTSVVSLRALILNDNEIVS--ICK-LDQMKELNTLGMDS------------YFFNLNNLNLQGNP-VAEYDKLAKKVKTL 67 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Iss--Ieg-Le~L~nL~TLdLS~------------~L~nLrtLnLeGNP-Iak~e~YrrKI~a~ 67 (307)
+..+.+|+.|+|++|.|+. +.. +..|++|++|+|++ .+++|++|+|.+|+ +... . ...+...
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-~-l~~~~~~ 166 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-A-LQTLLSS 166 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-H-HHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-H-HHHHHhc
Confidence 3456788888888888764 333 67778888888885 67888888888884 4332 1 1345567
Q ss_pred CCCCceecCc
Q 021827 68 LPNLCIFNAR 77 (307)
Q Consensus 68 LP~L~yLDar 77 (307)
+|+|++|+-.
T Consensus 167 ~~~L~~L~l~ 176 (336)
T 2ast_B 167 CSRLDELNLS 176 (336)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEcCC
Confidence 7888888764
No 112
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.82 E-value=1.4e-05 Score=80.20 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=48.6
Q ss_pred cccccccCCeeeccCcccccc--cCCCCCCCCCeEeccc--------------CCCCCceEEccCCCccCccchHHHHHH
Q 021827 3 DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMDS--------------YFFNLNNLNLQGNPVAEYDKLAKKVKT 66 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssI--egLe~L~nL~TLdLS~--------------~L~nLrtLnLeGNPIak~e~YrrKI~a 66 (307)
.+..|++|++|+|++|.|+.+ ..+..|++|++|+|++ .|++|+.|+|.+|.+..... .....
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~ 145 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--HPSFG 145 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--CGGGG
T ss_pred HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--chhHh
Confidence 356677777888888877776 2377777777777775 45677788888887765421 01234
Q ss_pred hCCCCceecC
Q 021827 67 LLPNLCIFNA 76 (307)
Q Consensus 67 ~LP~L~yLDa 76 (307)
.||+|++|+-
T Consensus 146 ~L~~L~~L~L 155 (844)
T 3j0a_A 146 KLNSLKSIDF 155 (844)
T ss_dssp TCSSCCEEEE
T ss_pred hCCCCCEEEC
Confidence 5777777763
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.82 E-value=1.1e-05 Score=77.32 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=16.0
Q ss_pred ccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827 6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMD 38 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS 38 (307)
.|++|+.|+|++|.|+.|.. +..|++|++|+|+
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 34445555555555544443 4444455555544
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.81 E-value=1.4e-05 Score=80.09 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=60.7
Q ss_pred cccccccCCeeeccCcccccccC-CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 3 DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
++..|.+|+.|+|++|.|+.|+. |..|++|++|+|++ .|++|++|+|.+|.|...+.. +..|++
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~----~~~l~~ 317 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE----FGNLCN 317 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS----TTSCTT
T ss_pred hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh----hhcCCC
Confidence 45678999999999999999976 88999999999997 678999999999999877652 456888
Q ss_pred CceecC
Q 021827 71 LCIFNA 76 (307)
Q Consensus 71 L~yLDa 76 (307)
|++|+-
T Consensus 318 L~~L~L 323 (727)
T 4b8c_D 318 LQFLGV 323 (727)
T ss_dssp CCCEEC
T ss_pred ccEEeC
Confidence 888875
No 115
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.81 E-value=3.3e-05 Score=72.70 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=30.8
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCCeEeccc------------CCCCCceEEccCCCccC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak 56 (307)
+..|.+|++|+|++|+|+.+.. +..|++|++|+|++ .+++|++|+|.+|.+..
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence 4556666666666666665532 55666666666654 34555555555555544
No 116
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.80 E-value=1.9e-05 Score=78.27 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=56.4
Q ss_pred ccccccccCCeeeccCccccc-cc---CCCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHH
Q 021827 2 DDVTSVVSLRALILNDNEIVS-IC---KLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKV 64 (307)
Q Consensus 2 DeL~~L~nL~aL~LS~N~Iss-Ie---gLe~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI 64 (307)
+.+..|.+|++|+|++|.|+. |. .|..|++|++|+|++ .|++|++|+|.+|.+.........+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 467788999999999999873 22 577888999999985 5688999999999887665533333
Q ss_pred HHhCCCCceecCc
Q 021827 65 KTLLPNLCIFNAR 77 (307)
Q Consensus 65 ~a~LP~L~yLDar 77 (307)
...+|+|++|+..
T Consensus 174 ~~~l~~L~~L~Ls 186 (768)
T 3rgz_A 174 SDGCGELKHLAIS 186 (768)
T ss_dssp TTCCTTCCEEECC
T ss_pred hccCCCCCEEECC
Confidence 4566777776643
No 117
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.80 E-value=2.5e-05 Score=68.47 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=50.0
Q ss_pred ccCCeeeccCccccccc--CCCCCCCCCeEeccc------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSIC--KLDQMKELNTLGMDS------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIe--gLe~L~nL~TLdLS~------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
.+|+.|+|++|.|+.+. .+..|++|++|+|++ .+++|+.|+|.+|++...+.. ...+|+|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~ 267 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG----LADHKYIQV 267 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT----TTTCSSCCE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh----hccCCCcCE
Confidence 67888888888888773 477888888888885 567888888888888866552 345788888
Q ss_pred ecCc
Q 021827 74 FNAR 77 (307)
Q Consensus 74 LDar 77 (307)
|+-.
T Consensus 268 L~l~ 271 (330)
T 1xku_A 268 VYLH 271 (330)
T ss_dssp EECC
T ss_pred EECC
Confidence 7753
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.79 E-value=1.6e-05 Score=69.06 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=55.0
Q ss_pred ccccccCCeeeccCccccc--ccCCCCCCCCCeEeccc--------------CCCCCceEEccCC-CccCccchHHHHHH
Q 021827 4 VTSVVSLRALILNDNEIVS--ICKLDQMKELNTLGMDS--------------YFFNLNNLNLQGN-PVAEYDKLAKKVKT 66 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Iss--IegLe~L~nL~TLdLS~--------------~L~nLrtLnLeGN-PIak~e~YrrKI~a 66 (307)
+..|++|+.|+|++|.|+. +..+..+++|++|+|++ .+++|++|+|.+| .+.... ...+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~ 191 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH--VQVAVA 191 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH--HHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH--HHHHHH
Confidence 4678899999999998873 33477788999999986 5788999999999 665421 234566
Q ss_pred hCC-CCceecCcc
Q 021827 67 LLP-NLCIFNARP 78 (307)
Q Consensus 67 ~LP-~L~yLDarp 78 (307)
.+| +|++|+-.-
T Consensus 192 ~l~~~L~~L~l~~ 204 (336)
T 2ast_B 192 HVSETITQLNLSG 204 (336)
T ss_dssp HSCTTCCEEECCS
T ss_pred hcccCCCEEEeCC
Confidence 788 898888643
No 119
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.78 E-value=1.4e-05 Score=67.04 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=36.6
Q ss_pred ccccccCCeeeccCcccccccCCCCCCCCC---eEeccc-------------CCCCCc-eEEccCCCccCccc
Q 021827 4 VTSVVSLRALILNDNEIVSICKLDQMKELN---TLGMDS-------------YFFNLN-NLNLQGNPVAEYDK 59 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIegLe~L~nL~---TLdLS~-------------~L~nLr-tLnLeGNPIak~e~ 59 (307)
+..|++|+.|+|++|+|+.|+.+..+++|+ +|+|++ .+++|+ .|+|.+|.+...+.
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 445677777777777777776666666666 666664 345666 77777777665443
No 120
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.71 E-value=1.3e-05 Score=69.39 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=15.5
Q ss_pred CCCCCceEEccCCCccCcc-chHHHHHHhCCCCce
Q 021827 40 YFFNLNNLNLQGNPVAEYD-KLAKKVKTLLPNLCI 73 (307)
Q Consensus 40 ~L~nLrtLnLeGNPIak~e-~YrrKI~a~LP~L~y 73 (307)
+|++|+.|+|.++|-.... --...+++.||+|++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 4455555555555532222 223344455555543
No 121
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.69 E-value=3.9e-05 Score=74.72 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=28.2
Q ss_pred ccccCCeeeccCcccccccC-CCCCCCCCeEeccc------------------CCCCCceEEccCCCccCccc
Q 021827 6 SVVSLRALILNDNEIVSICK-LDQMKELNTLGMDS------------------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~------------------~L~nLrtLnLeGNPIak~e~ 59 (307)
.|++|+.|+|++|+|+.|+. +..|++|++|+|++ .|++|+.|+|.+|.+...+.
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCH
Confidence 45555555555555555533 45555555555521 34555555555555544433
No 122
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.69 E-value=5e-05 Score=73.96 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=55.8
Q ss_pred cccccccCCeeeccCccccc------------------ccC-CC--CCCCCCeEeccc------------CCCCCceEEc
Q 021827 3 DVTSVVSLRALILNDNEIVS------------------ICK-LD--QMKELNTLGMDS------------YFFNLNNLNL 49 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~Iss------------------Ieg-Le--~L~nL~TLdLS~------------~L~nLrtLnL 49 (307)
.+..|++|+.|+|++|.|+. |+. +. .|++|++|+|++ .|++|++|+|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 47789999999999999998 666 77 899999999986 6789999999
Q ss_pred cCCC-ccC--ccchHHHH--HHhCCCCceecCc
Q 021827 50 QGNP-VAE--YDKLAKKV--KTLLPNLCIFNAR 77 (307)
Q Consensus 50 eGNP-Iak--~e~YrrKI--~a~LP~L~yLDar 77 (307)
.+|. +.. .+.....+ ...+|+|++|+-.
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 9998 663 33311111 0224777777643
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.65 E-value=6.1e-05 Score=70.87 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=50.0
Q ss_pred ccCCeeeccCcccccccCCCCCCCCCeEeccc--------CCCCCceEEccCCCccCccchHHHHHHhCCCCceecCc
Q 021827 8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS--------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 77 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDar 77 (307)
.+|+.|+|++|+|+.|+.+..|++|++|+|++ .+.+|++|+|.+|.+...+. ...+|+|++|+..
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~-----~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-----LQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCcc-----ccCCCCCCEEECC
Confidence 57888888888888888888888888888886 34578888888888877653 2457777777643
No 124
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=5e-05 Score=78.88 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=57.4
Q ss_pred cccccccCCeeeccCccccc------------------ccC-CC--CCCCCCeEeccc------------CCCCCceEEc
Q 021827 3 DVTSVVSLRALILNDNEIVS------------------ICK-LD--QMKELNTLGMDS------------YFFNLNNLNL 49 (307)
Q Consensus 3 eL~~L~nL~aL~LS~N~Iss------------------Ieg-Le--~L~nL~TLdLS~------------~L~nLrtLnL 49 (307)
.+..|++|+.|+|++|.|+. |+. +. .|++|++|+|++ .|++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 57789999999999999998 665 66 899999999986 6789999999
Q ss_pred cCCC-ccC--ccchHHHHH---HhCCCCceecCc
Q 021827 50 QGNP-VAE--YDKLAKKVK---TLLPNLCIFNAR 77 (307)
Q Consensus 50 eGNP-Iak--~e~YrrKI~---a~LP~L~yLDar 77 (307)
.+|. +.. .+.....+. ..+|+|++|+-.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 9998 664 343222222 356788877743
No 125
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.55 E-value=8.4e-05 Score=73.71 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=34.2
Q ss_pred cccccCCeeeccCcccccccCCCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
..|++|+.|+|++|.|+....+..|++|++|+|++ .+++|++|+|.+|.+..... .....+|+|++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~ 251 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS---RAISTCTELKL 251 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH---HHTTTCSSCCE
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc---HHHhcCCCCCE
Confidence 34444555555555554444445555555555553 34556666666666543211 22334555555
Q ss_pred ec
Q 021827 74 FN 75 (307)
Q Consensus 74 LD 75 (307)
|+
T Consensus 252 L~ 253 (768)
T 3rgz_A 252 LN 253 (768)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 126
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=8.5e-05 Score=77.16 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=15.9
Q ss_pred ccCCeeeccCcccccccC-CC--CCCCCCeEeccc
Q 021827 8 VSLRALILNDNEIVSICK-LD--QMKELNTLGMDS 39 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg-Le--~L~nL~TLdLS~ 39 (307)
++|+.|+|++|+|+.|+. +. .|++|+.|+|++
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEEEeCC
Confidence 355555555555554443 22 455555555553
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.48 E-value=0.00013 Score=72.55 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=42.8
Q ss_pred ccCCeeeccCcccccccCCCCCCCCCeEeccc--------CCCCCceEEccCCCccCccchHHHHHHhCCCCceecC
Q 021827 8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS--------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 76 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDa 76 (307)
.+|+.|+|++|.|+.|+ ..+++|++|+|++ .+++|+.|+|.+|.|...+. ....||+|++|+-
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCH----HHhhccccCEEEe
Confidence 56777777777777766 4556777777775 44677778888887776554 2446777777654
No 128
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.48 E-value=0.00013 Score=73.14 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=16.8
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD 38 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS 38 (307)
..|++|+.|+|++|.|+.+.. +..|++|++|+|+
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 344555555555555554422 4445555555554
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.47 E-value=0.00011 Score=73.01 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=12.8
Q ss_pred cCCeeeccCcccccccCCCCCCCCCeEecc
Q 021827 9 SLRALILNDNEIVSICKLDQMKELNTLGMD 38 (307)
Q Consensus 9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS 38 (307)
+|+.|+|++|.|+.|+. .+++|++|+|+
T Consensus 62 ~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls 89 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA--LPPELRTLEVS 89 (622)
T ss_dssp TCSEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred CCcEEEecCCCCCCCCC--cCCCCCEEEcC
Confidence 34444444444444443 34444444444
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.47 E-value=4.6e-05 Score=68.17 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=26.0
Q ss_pred ccCCeeeccCcccccccC--CCCCCCCCeEeccc
Q 021827 8 VSLRALILNDNEIVSICK--LDQMKELNTLGMDS 39 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~ 39 (307)
.+|+.|+|++|+|++|.. +..|++|++|+|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 63 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEEC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcC
Confidence 568888888888888874 78888888888875
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.45 E-value=5.6e-05 Score=68.25 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=39.2
Q ss_pred cccccCCeeeccCccccc-----ccC-CCCCCCCCeEeccc-------------CCC----CCceEEccCCCccCcc-ch
Q 021827 5 TSVVSLRALILNDNEIVS-----ICK-LDQMKELNTLGMDS-------------YFF----NLNNLNLQGNPVAEYD-KL 60 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~Iss-----Ieg-Le~L~nL~TLdLS~-------------~L~----nLrtLnLeGNPIak~e-~Y 60 (307)
..+++|+.|+|++|+|+. |.. |..+++|++|+|++ .++ +|++|+|.+|.|.... ..
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 445666666666666663 222 45556666666664 233 4666666666665432 11
Q ss_pred HHHHHHhCCCCceecC
Q 021827 61 AKKVKTLLPNLCIFNA 76 (307)
Q Consensus 61 rrKI~a~LP~L~yLDa 76 (307)
.......+|+|++||-
T Consensus 105 l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHL 120 (461)
T ss_dssp HHHHTTSCTTCCEEEC
T ss_pred HHHHHccCCceeEEEC
Confidence 1233344566666654
No 132
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.41 E-value=9.9e-05 Score=61.38 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=29.7
Q ss_pred cccccCCeeeccCc-cccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccC
Q 021827 5 TSVVSLRALILNDN-EIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAE 56 (307)
Q Consensus 5 ~~L~nL~aL~LS~N-~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak 56 (307)
....+|++|+|++| +|.. |. .|..++.|++|+|++ ..++|++|+|.+|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34556666666666 5542 22 255556666666664 33556666666666654
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.41 E-value=0.00016 Score=64.87 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=41.3
Q ss_pred ccCCeeeccCccccccc------CCCCCC-CCCeEeccc------------C-----CCCCceEEccCCCccCccc-hHH
Q 021827 8 VSLRALILNDNEIVSIC------KLDQMK-ELNTLGMDS------------Y-----FFNLNNLNLQGNPVAEYDK-LAK 62 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIe------gLe~L~-nL~TLdLS~------------~-----L~nLrtLnLeGNPIak~e~-Yrr 62 (307)
.+|+.|+|++|.|+.+. .|..++ +|++|+|++ . +++|++|+|.+|.+..... ...
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 44777777777777653 355666 677777775 1 2677777777777765432 122
Q ss_pred HHHHhC-CCCceecCc
Q 021827 63 KVKTLL-PNLCIFNAR 77 (307)
Q Consensus 63 KI~a~L-P~L~yLDar 77 (307)
.....+ ++|++||-.
T Consensus 102 ~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 102 KTLAAIPFTITVLDLG 117 (362)
T ss_dssp HHHHTSCTTCCEEECC
T ss_pred HHHHhCCCCccEEECc
Confidence 222233 666666643
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.39 E-value=0.00018 Score=71.09 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=6.9
Q ss_pred CCceEEccCCCccCc
Q 021827 43 NLNNLNLQGNPVAEY 57 (307)
Q Consensus 43 nLrtLnLeGNPIak~ 57 (307)
+|++|+|.+|++...
T Consensus 161 ~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFL 175 (571)
T ss_dssp TCCEEECCSSCCSCC
T ss_pred CcCEEECCCCCCCCc
Confidence 444444444444443
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.36 E-value=0.00022 Score=63.91 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=16.0
Q ss_pred ccCCeeeccCcccccccC------CCCC-CCCCeEeccc
Q 021827 8 VSLRALILNDNEIVSICK------LDQM-KELNTLGMDS 39 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg------Le~L-~nL~TLdLS~ 39 (307)
.+|+.|+|++|+|+.+.. |..+ ++|++|+|++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 118 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC
Confidence 555556666665553321 3333 4555555554
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=67.45 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=44.8
Q ss_pred cccCCeeeccCccccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccc-hHHH
Q 021827 7 VVSLRALILNDNEIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDK-LAKK 63 (307)
Q Consensus 7 L~nL~aL~LS~N~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~-YrrK 63 (307)
..+|++|+|++|.|+. |. .|..++.|++|+|++ .+++|++|+|.+|.|....- +...
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4567788888887764 21 135677778888875 45678888888887765432 1223
Q ss_pred HHHhCCCCceecC
Q 021827 64 VKTLLPNLCIFNA 76 (307)
Q Consensus 64 I~a~LP~L~yLDa 76 (307)
.+...|+|++||-
T Consensus 234 ~L~~~~~L~~L~L 246 (372)
T 3un9_A 234 AAREHPSLELLHL 246 (372)
T ss_dssp HHHHCSSCCEEEC
T ss_pred HHHhCCCCCEEec
Confidence 3345678887763
No 137
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=0.00012 Score=60.85 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=57.9
Q ss_pred ccccccCCeeeccCccccc-----c-cCCCCCCCCCeEeccc----------------CCCCCceEEc--cCCCccCccc
Q 021827 4 VTSVVSLRALILNDNEIVS-----I-CKLDQMKELNTLGMDS----------------YFFNLNNLNL--QGNPVAEYDK 59 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~Iss-----I-egLe~L~nL~TLdLS~----------------~L~nLrtLnL--eGNPIak~e~ 59 (307)
|...++|++|+|++|+|.. | ..|...+.|++|+|++ ..+.|++|+| .+|+|....-
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 4556889999999999985 2 3366778999999996 5688999999 9999987532
Q ss_pred -hHHHHHHhCCCCceecCcc
Q 021827 60 -LAKKVKTLLPNLCIFNARP 78 (307)
Q Consensus 60 -YrrKI~a~LP~L~yLDarp 78 (307)
+....+...++|++||-..
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHhCCCcCEEeccC
Confidence 2334455679999998543
No 138
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.33 E-value=0.00023 Score=66.96 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=34.9
Q ss_pred cCCeeeccCcccccccCCCCCCCCCeEeccc--------CCCCCceEEccCCCccCccchHHHHHHhCCCCceecC
Q 021827 9 SLRALILNDNEIVSICKLDQMKELNTLGMDS--------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 76 (307)
Q Consensus 9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~--------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLDa 76 (307)
+|+.|+|++|+|+.|+.+..|++|++|+|++ .+++|++|+|.+|.+...+. ...+|+|++|+.
T Consensus 174 ~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~l 244 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-----LQNLPFLTTIYA 244 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEEC
T ss_pred cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-----cCCCCCCCEEEC
Confidence 4555555555555555555666666666654 12356666666666654443 235666666664
No 139
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.32 E-value=0.00024 Score=70.27 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=32.3
Q ss_pred ccCCeeeccCcccccccCCCCCCCCCeEeccc----CCC----CCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827 8 VSLRALILNDNEIVSICKLDQMKELNTLGMDS----YFF----NLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 75 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIegLe~L~nL~TLdLS~----~L~----nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD 75 (307)
.+|+.|+|++|.|+.|+ ..+++|++|+|++ .++ +|++|+|.+|.+...+. .+|+|++|+
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE-------LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-------CCTTCCEEE
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCC-------cCccccEEe
Confidence 44666666666666665 4456666666664 111 55556666655555443 345555554
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.31 E-value=0.00031 Score=63.42 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred cCCeeeccCccccc------ccCCCCCCCCCeEeccc-----------------CCCCCceEEccCCCccCccc-hHHHH
Q 021827 9 SLRALILNDNEIVS------ICKLDQMKELNTLGMDS-----------------YFFNLNNLNLQGNPVAEYDK-LAKKV 64 (307)
Q Consensus 9 nL~aL~LS~N~Iss------IegLe~L~nL~TLdLS~-----------------~L~nLrtLnLeGNPIak~e~-YrrKI 64 (307)
+|+.|+|++|+|+. ...|..+++|++|+|++ .+++|++|+|.+|.+....- +....
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 56777777777663 22366666777777764 13457777777776655321 22233
Q ss_pred HHhCCCCceecCc
Q 021827 65 KTLLPNLCIFNAR 77 (307)
Q Consensus 65 ~a~LP~L~yLDar 77 (307)
...+|+|++|+-.
T Consensus 166 l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 166 LRAKPDFKELTVS 178 (461)
T ss_dssp HHHCTTCCEEECC
T ss_pred HhhCCCCCEEECc
Confidence 4456777777644
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.00038 Score=61.54 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=42.9
Q ss_pred cccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCc-eEEccCCCccCccchHHHHHHhCCCCc
Q 021827 7 VVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLN-NLNLQGNPVAEYDKLAKKVKTLLPNLC 72 (307)
Q Consensus 7 L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLr-tLnLeGNPIak~e~YrrKI~a~LP~L~ 72 (307)
|.+|+.|+|++|+|++|+. +..|.+|+.|+|++ .|.+|+ .|+|.. .+...+. ....-|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~---~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEF---GAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECT---TTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEch---hhhhCCccCC
Confidence 6777788888777777776 77777777777764 556676 777766 4554443 2334456666
Q ss_pred eec
Q 021827 73 IFN 75 (307)
Q Consensus 73 yLD 75 (307)
.++
T Consensus 301 ~l~ 303 (329)
T 3sb4_A 301 YVL 303 (329)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.03 E-value=0.00029 Score=65.13 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=46.4
Q ss_pred ccccccCCeeeccCcccccc------cCCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCcc
Q 021827 4 VTSVVSLRALILNDNEIVSI------CKLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYD 58 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssI------egLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e 58 (307)
|..+++|++|+|++|.|+.. ..|..++.|++|+|++ .+++|++|+|.+|+|....
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 35678999999999999862 3477888999999996 4589999999999997653
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.01 E-value=0.00021 Score=66.69 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=38.5
Q ss_pred cccccCCeeeccCc--cccc--ccCC-CCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHH
Q 021827 5 TSVVSLRALILNDN--EIVS--ICKL-DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKT 66 (307)
Q Consensus 5 ~~L~nL~aL~LS~N--~Iss--IegL-e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a 66 (307)
..|++|+.|+|+++ .|+. +..+ ..+++|++|+|++ .+++|+.|+|.+|+|... ....+..
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~ 510 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER--AIAAAVT 510 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH--HHHHHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH--HHHHHHH
Confidence 44677777777532 2331 1111 2356677777764 557777777777775322 1233445
Q ss_pred hCCCCceec
Q 021827 67 LLPNLCIFN 75 (307)
Q Consensus 67 ~LP~L~yLD 75 (307)
.+|+|++|+
T Consensus 511 ~l~~L~~L~ 519 (592)
T 3ogk_B 511 KLPSLRYLW 519 (592)
T ss_dssp HCSSCCEEE
T ss_pred hcCccCeeE
Confidence 567777765
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.95 E-value=0.00029 Score=65.57 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=34.3
Q ss_pred cccCCeeeccCccccc--ccCC-CCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCCC
Q 021827 7 VVSLRALILNDNEIVS--ICKL-DQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 70 (307)
Q Consensus 7 L~nL~aL~LS~N~Iss--IegL-e~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~ 70 (307)
+++|+.|+|++|.|+. +..+ ..+++|++|+|++ .+++|+.|+|.+||+.. .. ...+...+|.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~-~~~l~~~lp~ 532 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF-GA-CKLLGQKMPK 532 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH-HH-HHHHHHHCTT
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH-HH-HHHHHHhCCC
Confidence 4556666666666542 1112 3456666666664 35666666666666621 11 2234455666
Q ss_pred Cce
Q 021827 71 LCI 73 (307)
Q Consensus 71 L~y 73 (307)
|++
T Consensus 533 l~i 535 (594)
T 2p1m_B 533 LNV 535 (594)
T ss_dssp EEE
T ss_pred CEE
Confidence 644
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.87 E-value=0.00055 Score=59.26 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=54.0
Q ss_pred cCCeeeccCcccc--cccCCCCCCCCCeEeccc-------------CC----CCCceEEccCCCccCccchHHHHHHhCC
Q 021827 9 SLRALILNDNEIV--SICKLDQMKELNTLGMDS-------------YF----FNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 9 nL~aL~LS~N~Is--sIegLe~L~nL~TLdLS~-------------~L----~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+|++|+|+++.|+ .+..|..|++|++|+|+. .+ ++|+.|+|.+|+-..+... .-++.+|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI--IALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHhcCC
Confidence 5899999999997 456688899999999997 43 4799999999985444442 2235689
Q ss_pred CCceecCcccC
Q 021827 70 NLCIFNARPID 80 (307)
Q Consensus 70 ~L~yLDarpV~ 80 (307)
+|++|+-.-..
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999865543
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.85 E-value=0.00024 Score=63.56 Aligned_cols=65 Identities=17% Similarity=0.058 Sum_probs=49.4
Q ss_pred ccCCeeeccCcccccccC-CCCCCCCCeEeccc-------------CCCCCceEEccCCCccCccchHHHHHHhCCCCce
Q 021827 8 VSLRALILNDNEIVSICK-LDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 73 (307)
Q Consensus 8 ~nL~aL~LS~N~IssIeg-Le~L~nL~TLdLS~-------------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~y 73 (307)
..|+.|+|++|+|+.|.. +-.+.+|.+|+|++ .+++|++|+|++|.|...+.+ ...-|++|+.
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~ 230 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRA 230 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEEC
T ss_pred hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhh
Confidence 358889999999999976 55677899999974 568999999999999988763 2334444444
Q ss_pred ec
Q 021827 74 FN 75 (307)
Q Consensus 74 LD 75 (307)
++
T Consensus 231 l~ 232 (350)
T 4ay9_X 231 RS 232 (350)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.74 E-value=0.0013 Score=61.31 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=46.7
Q ss_pred cccccCCeeeccCccccccc----------------------------CCCCCCCCCeEeccc-----------CCCCCc
Q 021827 5 TSVVSLRALILNDNEIVSIC----------------------------KLDQMKELNTLGMDS-----------YFFNLN 45 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIe----------------------------gLe~L~nL~TLdLS~-----------~L~nLr 45 (307)
..+++|+.|+|++|.+..+. .+..+++|++|.|+. .+++|+
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 35677888888888776543 234445555555543 467899
Q ss_pred eEEccCCCccCccchHHHHHHhCCCCceecCc
Q 021827 46 NLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 77 (307)
Q Consensus 46 tLnLeGNPIak~e~YrrKI~a~LP~L~yLDar 77 (307)
.|+|.+|++....- ..+...+|+|++|+-.
T Consensus 297 ~L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 297 KLDLLYALLETEDH--CTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEETTCCCCHHHH--HHHHTTCTTCCEEEEE
T ss_pred EEecCCCcCCHHHH--HHHHHhCcCCCEEecc
Confidence 99999999543321 2455678888888754
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.71 E-value=0.0017 Score=60.45 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=37.8
Q ss_pred ccccCCeeeccCccccc-----ccCCC-CCCCCCeEeccc---------------CCCCCceEEccCCCccCccchHHHH
Q 021827 6 SVVSLRALILNDNEIVS-----ICKLD-QMKELNTLGMDS---------------YFFNLNNLNLQGNPVAEYDKLAKKV 64 (307)
Q Consensus 6 ~L~nL~aL~LS~N~Iss-----IegLe-~L~nL~TLdLS~---------------~L~nLrtLnLeGNPIak~e~YrrKI 64 (307)
.|++|++|+|++|.|+. +..+. .+++|++|+|+. .+++|++|+|.+|.... . ...+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~-l~~~ 230 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--K-LATL 230 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--H-HHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--H-HHHH
Confidence 45667777777776553 22222 455677777653 34677777777762211 1 2344
Q ss_pred HHhCCCCceec
Q 021827 65 KTLLPNLCIFN 75 (307)
Q Consensus 65 ~a~LP~L~yLD 75 (307)
...+|+|+.|+
T Consensus 231 ~~~~~~L~~L~ 241 (594)
T 2p1m_B 231 LQRAPQLEELG 241 (594)
T ss_dssp HHHCTTCSEEE
T ss_pred HhcCCcceEcc
Confidence 45566666665
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.53 E-value=0.0016 Score=52.50 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=24.9
Q ss_pred cCCeeeccCcccccccCCCCCCCCCeEecccCCCCCceEEccCCCcc
Q 021827 9 SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVA 55 (307)
Q Consensus 9 nL~aL~LS~N~IssIegLe~L~nL~TLdLS~~L~nLrtLnLeGNPIa 55 (307)
+|+.|+|++|+|++|.. +.+ ..|++|++|+|.|||+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f---------~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLL---------DALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTG---------GGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccCh-hhh---------hhccccCEEEecCCCee
Confidence 56666666666666653 001 14577889999999995
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.51 E-value=0.0021 Score=56.74 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred ccccccCCeeeccCcccccccC--CCCCCCCC-eEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCC
Q 021827 4 VTSVVSLRALILNDNEIVSICK--LDQMKELN-TLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 69 (307)
Q Consensus 4 L~~L~nL~aL~LS~N~IssIeg--Le~L~nL~-TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP 69 (307)
+..|.+|+.|+|.+| |+.|.. +..|.+|+ +|+|++ .|++|+.|+|.+|.+...+.+ ...-+|
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~---aF~~~~ 321 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDE---LFGNGV 321 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTT---TTCTTC
T ss_pred hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchh---hhcCCc
Confidence 457889999999999 999988 89999999 999986 679999999999999988763 445678
Q ss_pred CCceecC
Q 021827 70 NLCIFNA 76 (307)
Q Consensus 70 ~L~yLDa 76 (307)
+|+.+..
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 8887753
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.65 E-value=0.0029 Score=59.00 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=16.1
Q ss_pred ccccCCeeeccCcccccccCCCCCCCCCeEecc
Q 021827 6 SVVSLRALILNDNEIVSICKLDQMKELNTLGMD 38 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIegLe~L~nL~TLdLS 38 (307)
.+++|+.|+|++|.-.++..+ .+++|++|+|+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~ 201 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEII 201 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEE
T ss_pred cCCCCcEEEEeCCCCceeccc-cCCCCcEEEEe
Confidence 446677777766631223332 24455555554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.09 E-value=0.011 Score=53.63 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=31.4
Q ss_pred cccccCCeeeccCcccccccCCCCCC--CCCeEeccc
Q 021827 5 TSVVSLRALILNDNEIVSICKLDQMK--ELNTLGMDS 39 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIegLe~L~--nL~TLdLS~ 39 (307)
..|++|+.|+|++|+|+.+..|+.|. +|++|+|+.
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 229 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTT
T ss_pred hhCCCCCEEECCCCccCCchhhhhcccCCcceEEccC
Confidence 37899999999999999988888777 999999986
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.06 E-value=0.0076 Score=56.17 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=51.4
Q ss_pred ccccCCeeeccC--cc------cccccC-C--CCCCCCCeEeccc---------------CCCCCceEEccCCCccCccc
Q 021827 6 SVVSLRALILND--NE------IVSICK-L--DQMKELNTLGMDS---------------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 6 ~L~nL~aL~LS~--N~------IssIeg-L--e~L~nL~TLdLS~---------------~L~nLrtLnLeGNPIak~e~ 59 (307)
.|++|+.|.|+. |. |..|.. | ..+++|++|.|++ .+++|++|+|+.|.+.....
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 689999999853 22 322222 2 3578999999975 47899999999998876422
Q ss_pred hHHHHH---HhCCCCceecC--cccChhh
Q 021827 60 LAKKVK---TLLPNLCIFNA--RPIDRIT 83 (307)
Q Consensus 60 YrrKI~---a~LP~L~yLDa--rpV~e~t 83 (307)
..+. ..+|+|+.||- .+|.+..
T Consensus 297 --~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 297 --RLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp --HHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred --HHHHhhcccCCcceEEECCCCcCCHHH
Confidence 2222 46799998874 3455543
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.07 E-value=0.045 Score=48.01 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=49.7
Q ss_pred cccCCeeeccCc-cccc-----cc-CCCCCCCCCeEeccc----------------CCCCCceEEccCCCccCccchHHH
Q 021827 7 VVSLRALILNDN-EIVS-----IC-KLDQMKELNTLGMDS----------------YFFNLNNLNLQGNPVAEYDKLAKK 63 (307)
Q Consensus 7 L~nL~aL~LS~N-~Iss-----Ie-gLe~L~nL~TLdLS~----------------~L~nLrtLnLeGNPIak~e~YrrK 63 (307)
-..|+.|+|++| +|.. |+ .|...+.|+.|+|++ .-+.|++|+|..|.|...-- ..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga--~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--AR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--HH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH--HH
Confidence 356999999985 8863 33 377888999999986 44789999999999976533 34
Q ss_pred HHHhC---CCCceecC
Q 021827 64 VKTLL---PNLCIFNA 76 (307)
Q Consensus 64 I~a~L---P~L~yLDa 76 (307)
+...| ..|+.|+-
T Consensus 118 la~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKA 133 (197)
T ss_dssp HHHHTTTTCCCSEEEC
T ss_pred HHHHHhhCCceeEEEC
Confidence 44444 56777775
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.65 E-value=0.14 Score=44.84 Aligned_cols=80 Identities=8% Similarity=0.013 Sum_probs=55.5
Q ss_pred cccccCCeeeccCcccccc-----cC-CCCCCCCCeEeccc----------------CCCCCceEEccCC---CccCcc-
Q 021827 5 TSVVSLRALILNDNEIVSI-----CK-LDQMKELNTLGMDS----------------YFFNLNNLNLQGN---PVAEYD- 58 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssI-----eg-Le~L~nL~TLdLS~----------------~L~nLrtLnLeGN---PIak~e- 58 (307)
..-+.|+.|+|++|+|..- .. |...+-|++|+|++ .-..|+.|+|.+| +|-..-
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 3346799999999999833 22 55778899999996 4477999999865 444332
Q ss_pred chHHHHHHhCCCCceecCcccChhhh
Q 021827 59 KLAKKVKTLLPNLCIFNARPIDRITK 84 (307)
Q Consensus 59 ~YrrKI~a~LP~L~yLDarpV~e~tR 84 (307)
...-..+..=+.|+.|+...-....|
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~~g~~ 172 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFASMEAR 172 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred HHHHHHHHhCCCcCeEeccCCCccHH
Confidence 22234445568999998876554443
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.85 E-value=0.18 Score=47.00 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=34.8
Q ss_pred cccccCCeeeccCcccc-----cccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccc
Q 021827 5 TSVVSLRALILNDNEIV-----SICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDK 59 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~Is-----sIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~ 59 (307)
..|.+|+.|.|.+|.+. .|.. +..|.+|+.|.|.+ .|.+|+.|+|..| +.....
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 45677777777777765 4554 66777777777764 4566777777444 444433
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.63 E-value=0.41 Score=43.31 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=41.8
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
..+.+|+.+.|. +.|+.|.. +..|.+|+++.|.. .+.+|+.|+|-.| |.....| ...-+++|
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPES---AFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTC
T ss_pred ccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCC
Confidence 345677777775 55677765 66777777777764 4567777777433 5555443 23445666
Q ss_pred ceecC
Q 021827 72 CIFNA 76 (307)
Q Consensus 72 ~yLDa 76 (307)
+.++.
T Consensus 360 ~~i~~ 364 (394)
T 4gt6_A 360 NNIEY 364 (394)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66653
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.14 E-value=0.33 Score=43.22 Aligned_cols=33 Identities=9% Similarity=0.276 Sum_probs=17.3
Q ss_pred ccccCCeeeccCcccccccC--CCCCCCCCeEecc
Q 021827 6 SVVSLRALILNDNEIVSICK--LDQMKELNTLGMD 38 (307)
Q Consensus 6 ~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS 38 (307)
.|.+|+.+.|.+|.|++|.. +..|.+|+.+.|.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 34455555555555555544 4455555555554
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=88.20 E-value=0.52 Score=43.97 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=13.2
Q ss_pred cCCeeeccCcccccccC--CCCCCCCCeEec
Q 021827 9 SLRALILNDNEIVSICK--LDQMKELNTLGM 37 (307)
Q Consensus 9 nL~aL~LS~N~IssIeg--Le~L~nL~TLdL 37 (307)
+|+.|.| .|.|+.|.. +..|++|++|.|
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence 4455555 333444433 444555555544
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.50 E-value=0.57 Score=42.38 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=46.5
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
..+.+|+.+.|.+| |+.|.. +..|.+|+++.|.+ .+.+|+.|+|-.| +.....+ ...-+++|
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L 368 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINL 368 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTC
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHH---HhhCCCCC
Confidence 35677888888765 777765 67788888888864 5678888888766 6555542 23456777
Q ss_pred ceecC
Q 021827 72 CIFNA 76 (307)
Q Consensus 72 ~yLDa 76 (307)
+.++.
T Consensus 369 ~~i~l 373 (394)
T 4fs7_A 369 KKVEL 373 (394)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77653
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.66 E-value=0.81 Score=36.48 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=36.4
Q ss_pred CeeeccCcccc--cccCCCCCCCCCeEecccCCCCCceEEccCCCccCccchHHHHHHhCCCCceec
Q 021827 11 RALILNDNEIV--SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 75 (307)
Q Consensus 11 ~aL~LS~N~Is--sIegLe~L~nL~TLdLS~~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L~yLD 75 (307)
..++.++|+|+ +|+. .-.++|+.|+|.+|.|...+. .+...||+|++|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~-------------~lp~~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~ 61 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-------------AFPVDTTELVLTGNNLTALPP---GLLDALPALRTAH 61 (130)
T ss_dssp TEEECCSSCCCTTTSCS-------------CCCTTCSEEECTTSCCSSCCT---TTGGGCTTCCEEE
T ss_pred CEEEeCCCCCccccCCC-------------CCCcCCCEEECCCCcCCccCh---hhhhhccccCEEE
Confidence 47888899888 8872 012468899999999988765 4556788998764
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.04 E-value=0.89 Score=41.08 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=39.6
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCC
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGN 52 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGN 52 (307)
..+.+|+.|.|.++ |+.|.. +..|.+|+.+.|.. .+.+|+.|+|..|
T Consensus 317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence 56789999999865 999976 88999999999975 6789999999654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.73 E-value=1.8 Score=39.15 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=29.9
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCC
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNP 53 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNP 53 (307)
..|.+|+.+.|.+| |++|.. +..|.+|+.|.|.+ .+.+|++|+|.+|.
T Consensus 308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 34566777777654 666654 66666667666653 55667777776654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=79.73 E-value=2.2 Score=37.91 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=45.1
Q ss_pred cccccCCeeeccCcccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccCCCccCccchHHHHHHhCCCC
Q 021827 5 TSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 71 (307)
Q Consensus 5 ~~L~nL~aL~LS~N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeGNPIak~e~YrrKI~a~LP~L 71 (307)
..+.+|+.+.|.+| |++|.. +..+..|+++.|.. .+.+|+.++|.+|-|.....| ...-+++|
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~---aF~~c~~L 312 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR---VFMDCVKL 312 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTT---TTTTCTTC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhh---hhcCCCCC
Confidence 34567777777765 777755 66677788887764 567888888888777766654 22345566
Q ss_pred ceec
Q 021827 72 CIFN 75 (307)
Q Consensus 72 ~yLD 75 (307)
+.+.
T Consensus 313 ~~i~ 316 (379)
T 4h09_A 313 SSVT 316 (379)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.12 E-value=46 Score=25.58 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=24.1
Q ss_pred cccccccC--CCCCCCCCeEeccc-----------CCCCCceEEccC-CCc
Q 021827 18 NEIVSICK--LDQMKELNTLGMDS-----------YFFNLNNLNLQG-NPV 54 (307)
Q Consensus 18 N~IssIeg--Le~L~nL~TLdLS~-----------~L~nLrtLnLeG-NPI 54 (307)
..+++|.. +..|+.|+.+.|-. .+.+|+.+.|.+ ||.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~~P~ 56 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGEDPS 56 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCSCGG
T ss_pred CccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCCCCC
Confidence 34566665 66677777777654 567777877766 443
Done!