Your job contains 1 sequence.
>021828
MEMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVT
VCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWN
FNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECL
LNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFY
IANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIP
TNAAKLD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021828
(307 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2181499 - symbol:EMB1873 "EMBRYO DEFECTIVE 187... 873 4.5e-122 2
UNIPROTKB|Q87UB2 - symbol:aguA "Agmatine deiminase" speci... 639 3.6e-82 2
UNIPROTKB|Q48Q55 - symbol:aguA "Agmatine deiminase" speci... 635 2.5e-81 2
UNIPROTKB|Q725C6 - symbol:aguA1 "Putative agmatine deimin... 588 1.7e-78 2
UNIPROTKB|Q725C4 - symbol:aguA2 "Putative agmatine deimin... 558 2.0e-75 2
UNIPROTKB|Q8EIF2 - symbol:aguA "Putative agmatine deimina... 508 1.4e-68 2
TIGR_CMR|SO_0887 - symbol:SO_0887 "conserved hypothetical... 508 1.4e-68 2
TIGR_CMR|GSU_1028 - symbol:GSU_1028 "peptidylarginine dei... 298 2.8e-40 2
TIGR_CMR|SPO_2980 - symbol:SPO_2980 "porphyromonas-type p... 238 3.4e-34 2
UNIPROTKB|Q607A0 - symbol:MCA1861 "Putative uncharacteriz... 246 3.0e-31 2
UNIPROTKB|Q0BXW8 - symbol:HNE_2998 "Peptidyl-arginine dei... 336 1.8e-30 1
UNIPROTKB|Q5HUL0 - symbol:CJE1027 "Peptidyl-arginine deim... 223 4.6e-18 1
TIGR_CMR|CJE_1027 - symbol:CJE_1027 "peptidyl-arginine de... 223 4.6e-18 1
UNIPROTKB|Q4KDY9 - symbol:PFL_2437 "Uncharacterized prote... 91 0.00092 1
>TAIR|locus:2181499 [details] [associations]
symbol:EMB1873 "EMBRYO DEFECTIVE 1873" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009446 "putrescine biosynthetic process" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0047632 "agmatine deiminase activity"
evidence=IEA;IDA] [GO:0006596 "polyamine biosynthetic process"
evidence=IDA] InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
UniPathway:UPA00534 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006596 eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536
GO:GO:0047632 GO:GO:0004668 TIGRFAMs:TIGR03380 EMBL:AL357612
EMBL:AK118589 EMBL:BT005341 EMBL:AB062682 IPI:IPI00528764
PIR:T50502 RefSeq:NP_196434.1 UniGene:At.25550 PDB:1VKP PDB:2Q3U
PDB:3H7C PDB:3H7K PDBsum:1VKP PDBsum:2Q3U PDBsum:3H7C PDBsum:3H7K
ProteinModelPortal:Q8GWW7 SMR:Q8GWW7 STRING:Q8GWW7 PaxDb:Q8GWW7
PRIDE:Q8GWW7 DNASU:830713 EnsemblPlants:AT5G08170.1 GeneID:830713
KEGG:ath:AT5G08170 TAIR:At5g08170 InParanoid:Q8GWW7 OMA:ANFLIMN
PhylomeDB:Q8GWW7 ProtClustDB:PLN02690 BioCyc:MetaCyc:MONOMER-2641
BRENDA:3.5.3.12 EvolutionaryTrace:Q8GWW7 Genevestigator:Q8GWW7
GermOnline:AT5G08170 GO:GO:0033388 Uniprot:Q8GWW7
Length = 383
Score = 873 (312.4 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 155/215 (72%), Positives = 175/215 (81%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
E +PA HGY MPAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTV
Sbjct: 3 ESRESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFEPVTV 62
Query: 62 CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
CAS AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K + +AGIDWNF
Sbjct: 63 CASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNF 122
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
N+WGG +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEECLL
Sbjct: 123 NAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLL 182
Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
NKNRNPH++K QIE ELK YLGV IWLPRGL+G
Sbjct: 183 NKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 348 (127.6 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 69/90 (76%), Positives = 74/90 (82%)
Query: 216 GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVG 275
G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA+RVLS FP + VVG
Sbjct: 291 GITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVG 350
Query: 276 IERAREIVLGGGNIHCITQQQPAIPTNAAK 305
IE AREIVL GGNIHCITQQQPA PT+ A+
Sbjct: 351 IENAREIVLAGGNIHCITQQQPAEPTSVAE 380
>UNIPROTKB|Q87UB2 [details] [associations]
symbol:aguA "Agmatine deiminase" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
UniPathway:UPA00534 eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536
OMA:DGHVDNF ProtClustDB:PRK13551 GO:GO:0047632 GO:GO:0004668
TIGRFAMs:TIGR03380 GO:GO:0033388 EMBL:AE016853 RefSeq:NP_795120.1
ProteinModelPortal:Q87UB2 SMR:Q87UB2 GeneID:1187080
GenomeReviews:AE016853_GR KEGG:pst:PSPTO_5393 PATRIC:20002330
BioCyc:PSYR223283:GJIX-5461-MONOMER Uniprot:Q87UB2
Length = 368
Score = 639 (230.0 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 124/221 (56%), Positives = 149/221 (67%)
Query: 3 MNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVC 62
+N TP G+ MPAEW P +Q WM WPER DNWR AQ +A AI++FEPVTV
Sbjct: 4 LNSTPRADGFHMPAEWAPQTQVWMVWPERPDNWRLGGKPAQAAHVAIAKAIARFEPVTVA 63
Query: 63 ASAAQWENARSQLP-ENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
SAAQ++NAR++L NIRV+EMS N +W RD+GPT V+N ++ G++W F
Sbjct: 64 VSAAQYDNARARLDMPNIRVVEMSSNDAWVRDSGPTFVINDRG--------ELRGVNWEF 115
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-HSMVLEGGSIHVDGEGTCLTTEECL 180
N+WGG D G Y W+LD QV K+L ER PR+ VLEGGSIHVDGEGT +TTEECL
Sbjct: 116 NAWGGFDGGLYAPWNLDSQVGSKVLEIERCPRYATQGFVLEGGSIHVDGEGTLITTEECL 175
Query: 181 LNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 221
LN+NRNPHLT+ QIE L YL V KIIWLP GLF DG
Sbjct: 176 LNRNRNPHLTREQIEAVLSDYLAVDKIIWLPDGLFNDETDG 216
Score = 204 (76.9 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 223 AKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREI 282
++ R RLA SYVNF I NGGII P F D D +A +L + FP++EVV + RE+
Sbjct: 291 SQERNPSVRLAGSYVNFLIVNGGIIAPSFDDPM-DEKAREILQKLFPEHEVV-MAPGREL 348
Query: 283 VLGGGNIHCITQQQPA 298
+LGGGNIHC+TQQQPA
Sbjct: 349 LLGGGNIHCLTQQQPA 364
>UNIPROTKB|Q48Q55 [details] [associations]
symbol:aguA "Agmatine deiminase" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008295 "spermidine biosynthetic
process" evidence=ISS] [GO:0009446 "putrescine biosynthetic
process" evidence=ISS] [GO:0047632 "agmatine deiminase activity"
evidence=ISS] HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754
Pfam:PF04371 UniPathway:UPA00534 GO:GO:0005737 eggNOG:COG2957
HOGENOM:HOG000239346 KO:K10536 OMA:DGHVDNF ProtClustDB:PRK13551
GO:GO:0047632 GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380
GO:GO:0033388 EMBL:CP000058 RefSeq:YP_272461.1 HSSP:Q8DW17
ProteinModelPortal:Q48Q55 SMR:Q48Q55 STRING:Q48Q55 GeneID:3556359
GenomeReviews:CP000058_GR KEGG:psp:PSPPH_0153 PATRIC:19969300
GO:GO:0008295 Uniprot:Q48Q55
Length = 368
Score = 635 (228.6 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 122/221 (55%), Positives = 150/221 (67%)
Query: 3 MNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVC 62
+N TP G+ MPAEW P +Q WM WPER DNWR AQ +A AI++FEPVTV
Sbjct: 4 LNSTPRADGFHMPAEWAPQTQVWMVWPERPDNWRLGGKPAQAAHVAIAKAIARFEPVTVA 63
Query: 63 ASAAQWENARSQLP-ENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
SAAQ++NAR++L NIRV+EMS N +W RD+GPT V+N+ +V G++W F
Sbjct: 64 VSAAQYDNARARLDVPNIRVVEMSSNDAWVRDSGPTFVINERG--------EVRGVNWEF 115
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRF-PHSMVLEGGSIHVDGEGTCLTTEECL 180
N+WGG D G Y W+LD Q+ K+L ER PR+ VLEGGSIHVDGEGT +TTEECL
Sbjct: 116 NAWGGFDGGLYAPWNLDSQLGSKVLEIERCPRYVTKGFVLEGGSIHVDGEGTLITTEECL 175
Query: 181 LNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 221
LN+NRNPHLT+ QIE L YL V K++WLP GLF DG
Sbjct: 176 LNRNRNPHLTREQIEAILGDYLAVDKVVWLPDGLFNDETDG 216
Score = 200 (75.5 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 223 AKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREI 282
++ R RLA SYVNF I NGGII P F D D +A +L FP++EVV + RE+
Sbjct: 291 SQERNPSVRLAGSYVNFLIVNGGIIAPSFDDPM-DEKARELLQTLFPEHEVV-MAPGREL 348
Query: 283 VLGGGNIHCITQQQPA 298
+LGGGNIHC+TQQQPA
Sbjct: 349 LLGGGNIHCLTQQQPA 364
>UNIPROTKB|Q725C6 [details] [associations]
symbol:aguA1 "Putative agmatine deiminase 1" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754
Pfam:PF04371 EMBL:AE017262 GenomeReviews:AE017262_GR
RefSeq:YP_012658.1 ProteinModelPortal:Q725C6 STRING:Q725C6
GeneID:2798863 KEGG:lmf:LMOf2365_0047 PATRIC:20321266
eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536 OMA:DGHVDNF
ProtClustDB:PRK13551 GO:GO:0047632 GO:GO:0004668 GO:GO:0009446
TIGRFAMs:TIGR03380 Uniprot:Q725C6
Length = 364
Score = 588 (212.0 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 117/206 (56%), Positives = 145/206 (70%)
Query: 11 GYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWEN 70
G+ MP E+E H+ C++ WPER DNWR A AQ+ F VATAIS+FEPVTV AS++Q+ N
Sbjct: 12 GFRMPGEFEKHAGCYIIWPERPDNWRLGAKPAQKAFVDVATAISRFEPVTVVASSSQYVN 71
Query: 71 ARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDG 130
AR LP+ IRV+EM + +W RD+GPT VVN S V G+DW+FNSWGG+ DG
Sbjct: 72 ARYMLPDEIRVVEMDNDDAWVRDSGPTFVVNDSG--------DVRGVDWSFNSWGGLVDG 123
Query: 131 CYRDWSLDLQVARKILSTERLPRFPHS-MVLEGGSIHVDGEGTCLTTEECLLNKNRNPHL 189
Y W D QVA+KI ER R+ + VLEGGSIHVDGEGT +TTEECLL++ RNP L
Sbjct: 124 LYFPWDKDDQVAQKICELERKDRYRLADFVLEGGSIHVDGEGTLVTTEECLLSEGRNPQL 183
Query: 190 TKGQIENELKAYLGVMKIIWLPRGLF 215
+K QIE LK YL + KIIWL RG++
Sbjct: 184 SKQQIEMVLKEYLNLEKIIWLKRGIY 209
Score = 220 (82.5 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 45/73 (61%), Positives = 53/73 (72%)
Query: 225 PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVL 284
PR G RLAASY+N+Y ANGG++ P FGD D A L Q +P EVVG+ +AREI+L
Sbjct: 292 PREEGDRLAASYINYYTANGGVVFPLFGDPN-DELAREKLRQLYPNCEVVGV-KAREILL 349
Query: 285 GGGNIHCITQQQP 297
GGGNIHCITQQ P
Sbjct: 350 GGGNIHCITQQVP 362
>UNIPROTKB|Q725C4 [details] [associations]
symbol:aguA2 "Putative agmatine deiminase 2" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
EMBL:AE017262 GenomeReviews:AE017262_GR eggNOG:COG2957
HOGENOM:HOG000239346 KO:K10536 ProtClustDB:PRK13551 GO:GO:0047632
GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380 RefSeq:YP_012660.1
ProteinModelPortal:Q725C4 SMR:Q725C4 STRING:Q725C4 GeneID:2798636
KEGG:lmf:LMOf2365_0049 PATRIC:20321270 OMA:HAKVLVC Uniprot:Q725C4
Length = 369
Score = 558 (201.5 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 107/215 (49%), Positives = 141/215 (65%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
++ G P G+ MP E+EPH C+M WPER DNWR AQ+ + +VA AIS FEPVT+
Sbjct: 3 QLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQQNYKEVAVAISNFEPVTM 62
Query: 62 CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
S Q++NAR +LP+ IRVIEMS + +W RD GP+ +VN ++ G+DW F
Sbjct: 63 FVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVNDKG--------EMRGVDWGF 114
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHS-MVLEGGSIHVDGEGTCLTTEECL 180
N+WGG+ DG Y W D Q+A+K+ ERL + +LEG SIHVDGEGT +TTEECL
Sbjct: 115 NAWGGLLDGLYFPWDKDNQIAKKVCDLERLDYYSQKDFILEGCSIHVDGEGTLVTTEECL 174
Query: 181 LNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLF 215
L++ RNP+LTK +IE LK Y V K+IWL G +
Sbjct: 175 LSEGRNPNLTKIEIEQTLKKYFHVQKVIWLKHGFY 209
Score = 221 (82.9 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 46/73 (63%), Positives = 54/73 (73%)
Query: 225 PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVL 284
PR AG RLAASYVN+Y ANG II P F D K D +A +L Q +P ++VGI +AREI+L
Sbjct: 292 PRQAGDRLAASYVNYYTANGAIIFPLFDDPK-DKDAQELLEQLYPDRKIVGI-KAREILL 349
Query: 285 GGGNIHCITQQQP 297
GGGNIHCITQ P
Sbjct: 350 GGGNIHCITQHLP 362
>UNIPROTKB|Q8EIF2 [details] [associations]
symbol:aguA "Putative agmatine deiminase" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01841
InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG2957 HOGENOM:HOG000239346
KO:K10536 OMA:DGHVDNF ProtClustDB:PRK13551 GO:GO:0047632
GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380 RefSeq:NP_716518.2
ProteinModelPortal:Q8EIF2 SMR:Q8EIF2 GeneID:1168734
KEGG:son:SO_0887 PATRIC:23521437 Uniprot:Q8EIF2
Length = 370
Score = 508 (183.9 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 100/215 (46%), Positives = 130/215 (60%)
Query: 7 PALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAA 66
P+ G+ MPAEW WM WP R DNWR +AQ FAKV AI PV + A
Sbjct: 15 PSQDGFYMPAEWAAQQAVWMIWPYRPDNWRAAGAYAQATFAKVVDAIGAATPVYMGVPKA 74
Query: 67 QWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGG 126
A++ +P ++ ++EM N W RDTGPT+VVN + G + G+DW FN+WGG
Sbjct: 75 FLAKAKTVMPSHVTLVEMDSNDCWARDTGPTVVVN----AEG----ECRGVDWGFNAWGG 126
Query: 127 VDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRN 186
+ G Y W D QVA+++L+ R+ ++LEGGSIHVDGEGTC+T+ ECLLN NRN
Sbjct: 127 HNGGLYFPWDKDEQVAQQMLAQHGFARYRAPLILEGGSIHVDGEGTCMTSAECLLNANRN 186
Query: 187 PHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 221
P LTK QIE L+ YL V + IWL G++ DG
Sbjct: 187 PELTKEQIEGLLRDYLNVKQFIWLQDGVYMDETDG 221
Score = 206 (77.6 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 44/81 (54%), Positives = 54/81 (66%)
Query: 218 IHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 277
+ +G PR AG RLA SYVNF I N I+ P D D A + L + FP++E+VG+
Sbjct: 290 VTEGTGVPRTAGERLAGSYVNFLITNHRIVFPLL-DPATDDIAAQKLQEIFPEHEIVGVP 348
Query: 278 RAREIVLGGGNIHCITQQQPA 298
AREI+LGGGNIHCITQQ PA
Sbjct: 349 -AREILLGGGNIHCITQQIPA 368
>TIGR_CMR|SO_0887 [details] [associations]
symbol:SO_0887 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG2957
HOGENOM:HOG000239346 KO:K10536 OMA:DGHVDNF ProtClustDB:PRK13551
GO:GO:0047632 GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380
RefSeq:NP_716518.2 ProteinModelPortal:Q8EIF2 SMR:Q8EIF2
GeneID:1168734 KEGG:son:SO_0887 PATRIC:23521437 Uniprot:Q8EIF2
Length = 370
Score = 508 (183.9 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 100/215 (46%), Positives = 130/215 (60%)
Query: 7 PALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAA 66
P+ G+ MPAEW WM WP R DNWR +AQ FAKV AI PV + A
Sbjct: 15 PSQDGFYMPAEWAAQQAVWMIWPYRPDNWRAAGAYAQATFAKVVDAIGAATPVYMGVPKA 74
Query: 67 QWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGG 126
A++ +P ++ ++EM N W RDTGPT+VVN + G + G+DW FN+WGG
Sbjct: 75 FLAKAKTVMPSHVTLVEMDSNDCWARDTGPTVVVN----AEG----ECRGVDWGFNAWGG 126
Query: 127 VDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRN 186
+ G Y W D QVA+++L+ R+ ++LEGGSIHVDGEGTC+T+ ECLLN NRN
Sbjct: 127 HNGGLYFPWDKDEQVAQQMLAQHGFARYRAPLILEGGSIHVDGEGTCMTSAECLLNANRN 186
Query: 187 PHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 221
P LTK QIE L+ YL V + IWL G++ DG
Sbjct: 187 PELTKEQIEGLLRDYLNVKQFIWLQDGVYMDETDG 221
Score = 206 (77.6 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 44/81 (54%), Positives = 54/81 (66%)
Query: 218 IHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 277
+ +G PR AG RLA SYVNF I N I+ P D D A + L + FP++E+VG+
Sbjct: 290 VTEGTGVPRTAGERLAGSYVNFLITNHRIVFPLL-DPATDDIAAQKLQEIFPEHEIVGVP 348
Query: 278 RAREIVLGGGNIHCITQQQPA 298
AREI+LGGGNIHCITQQ PA
Sbjct: 349 -AREILLGGGNIHCITQQIPA 368
>TIGR_CMR|GSU_1028 [details] [associations]
symbol:GSU_1028 "peptidylarginine deiminase-related
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0004668
"protein-arginine deiminase activity" evidence=ISS] [GO:0019546
"arginine deiminase pathway" evidence=ISS] InterPro:IPR007466
Pfam:PF04371 EMBL:AE017180 GenomeReviews:AE017180_GR KO:K10536
GO:GO:0004668 GO:GO:0009446 OMA:ANFLIMN HOGENOM:HOG000239345
RefSeq:NP_952082.1 ProteinModelPortal:Q74ED4 SMR:Q74ED4
GeneID:2685626 KEGG:gsu:GSU1028 PATRIC:22024826
ProtClustDB:CLSK828145 BioCyc:GSUL243231:GH27-1023-MONOMER
Uniprot:Q74ED4
Length = 344
Score = 298 (110.0 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 73/205 (35%), Positives = 107/205 (52%)
Query: 14 MPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCAS-----AAQW 68
+PAEWE + WP +W + VFA++ I++FE V A+ AA
Sbjct: 5 LPAEWEEQDGVLIAWPHPGSDWYPWLRLVEPVFAQIVREITRFETALVVAADGERTAALL 64
Query: 69 ENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVD 128
E +++ E + ++E+ N +W RD GP + V + P + +D+ FN WG +
Sbjct: 65 EAVGARM-ERVAIVELPTNDTWARDFGP-VTVERDGR------PVL--LDFGFNGWG-LK 113
Query: 129 DGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPH 188
RD +L + R + +P +VLEGGSI DG GT LTT ECLLN NRNPH
Sbjct: 114 FAADRD-NLVTRRLRHLGIFGDIPAEMVGLVLEGGSIESDGRGTVLTTAECLLNPNRNPH 172
Query: 189 LTKGQIENELKAYLGVMKIIWLPRG 213
L++ +IE L YLG +++WL G
Sbjct: 173 LSRAEIEEALARYLGTERVLWLENG 197
Score = 147 (56.8 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 229 GTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGN 288
G RL A+Y NF + NG ++ P + D D A+ + +AFP E+VGI+ R +++ G+
Sbjct: 270 GQRLPATYANFLVINGAVLVPVYDDPA-DEAALEAIGRAFPGREIVGID-CRPLIIQHGS 327
Query: 289 IHCITQQQP 297
+HC+T Q P
Sbjct: 328 LHCVTMQLP 336
>TIGR_CMR|SPO_2980 [details] [associations]
symbol:SPO_2980 "porphyromonas-type peptidyl-arginine
deiminase family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR007466 Pfam:PF04371
EMBL:CP000031 GenomeReviews:CP000031_GR HOGENOM:HOG000239346
KO:K10536 GO:GO:0004668 GO:GO:0009446 RefSeq:YP_168186.1
ProteinModelPortal:Q5LP70 GeneID:3195665 KEGG:sil:SPO2980
PATRIC:23379395 OMA:VDFNFNG ProtClustDB:CLSK934013 Uniprot:Q5LP70
Length = 338
Score = 238 (88.8 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 67/209 (32%), Positives = 100/209 (47%)
Query: 11 GYLMPAEWEPHSQCWMGWPERLDNWRDDAL--HAQRVFAKVATAISKFEPVTVCASAAQW 68
G+ +P E H + +M WP D AQ+ A +A AI++FEPVT+ A+A
Sbjct: 11 GFHVPPEEARHDRTFMQWPVNRRVHPDPVFLDMAQQTIADIANAIAEFEPVTLLAAAEDH 70
Query: 69 ENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVD 128
AR +L + + + ++ W RD GP A G V+ I FN WG
Sbjct: 71 ARARRKLSDKVTLWDIPTEDLWCRDAGPLF------ARDGRGGLAVSHIQ--FNGWGRKQ 122
Query: 129 DGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPH 188
+R D +VA ++ LP P + E G + DG G + E +N NRNP
Sbjct: 123 --VHRR---DARVAEQVAQRLGLPLLPAGLRGEAGGVEQDGHGLLMAHESSWVNDNRNPG 177
Query: 189 LTKGQIENEL-KAYLGVMKIIWLPRGLFG 216
L++ +IE L +AY G ++IW P G++G
Sbjct: 178 LSRAEIEARLLRAY-GAQRMIWSP-GVWG 204
Score = 149 (57.5 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 226 RLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLG 285
R+ ASY N+Y+ NG +I QFGD + D A R L++ +P E+V + +G
Sbjct: 266 RVKSVDFVASYANYYVCNGAVIAAQFGDAETDRIAARALARHYPGREIVTLNVDPLGEMG 325
Query: 286 GGNIHCITQQQPA 298
GG IHC TQQ PA
Sbjct: 326 GG-IHCATQQMPA 337
>UNIPROTKB|Q607A0 [details] [associations]
symbol:MCA1861 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR007466 Pfam:PF04371 GO:GO:0004668 GO:GO:0009446
OMA:ANFLIMN EMBL:AE017282 GenomeReviews:AE017282_GR
HOGENOM:HOG000239345 RefSeq:YP_114298.1 ProteinModelPortal:Q607A0
GeneID:3103173 KEGG:mca:MCA1861 PATRIC:22607568 Uniprot:Q607A0
Length = 367
Score = 246 (91.7 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 71/205 (34%), Positives = 100/205 (48%)
Query: 17 EWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV-CASAAQWEN----- 70
EWE S + WP ++ ++ +A +A A+S+ E + + C AA
Sbjct: 28 EWEKQSAVLIAWPPGHGDFAPWLDQVEQTYAAIAAALSQRETLLIACLDAAHERRIGDIL 87
Query: 71 ARSQLPEN-IRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDD 129
A + +N I I + + W RDT P S G P++ +D+ FN WGG +
Sbjct: 88 ANTGADKNRIVFIRIPYDDIWVRDTAPL-----SRLHEGR--PEL--LDFRFNGWGGKYE 138
Query: 130 GCYRDWSLDLQ-VARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPH 188
C D +L + VA I R PR VLEGGS+ DG GT LTT CLLN NRNP
Sbjct: 139 -CSDDAALAARLVATGIFG--RTPRVQVDFVLEGGSVETDGLGTVLTTSRCLLNPNRNPG 195
Query: 189 LTKGQIENELKAYLGVMKIIWLPRG 213
++ +IE+ L LG +I+WL G
Sbjct: 196 YSRAEIEDCLARTLGADRILWLDHG 220
Score = 113 (44.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 229 GTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGN 288
G RL A+Y NF I N ++ P + D D A+ L+ FP E+V I ++ G+
Sbjct: 293 GQRLPATYANFLIVNDAVLVPVYADPA-DSVAIERLAPCFPDREIVPIH-CTPLIRQYGS 350
Query: 289 IHCITQQQP 297
+HC++ Q P
Sbjct: 351 LHCMSMQFP 359
>UNIPROTKB|Q0BXW8 [details] [associations]
symbol:HNE_2998 "Peptidyl-arginine deiminase family
protein" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR007466
Pfam:PF04371 eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536
GO:GO:0004668 GO:GO:0009446 EMBL:CP000158 GenomeReviews:CP000158_GR
RefSeq:YP_761675.1 ProteinModelPortal:Q0BXW8 STRING:Q0BXW8
GeneID:4287781 KEGG:hne:HNE_2998 PATRIC:32218869 OMA:CICEDEG
ProtClustDB:CLSK2781004 BioCyc:HNEP228405:GI69-3004-MONOMER
Uniprot:Q0BXW8
Length = 327
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 82/214 (38%), Positives = 105/214 (49%)
Query: 9 LHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV-CASAAQ 67
+H +L P EW P + W GWP + W D A+ A + F PV + C S
Sbjct: 4 IHPHL-PPEWAPQAALWAGWPRLAEEWGGDLTAARSEIAGFIRKAASFVPVKIACGSREA 62
Query: 68 WENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGV 127
+AR ++E+ W RDTGP VV + AS AQ + FN WGG
Sbjct: 63 AASARLATGGAGEIVEIPTGDIWLRDTGP--VVTGTGASRQAQV-------FRFNGWGGK 113
Query: 128 DDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNP 187
Y D + A ++ E LP HS++LEGG I DGEG LTT +CLLN NRNP
Sbjct: 114 ----YL-MEGDTETAGEVARVESLPARRHSLILEGGGIDADGEGRLLTTRQCLLNPNRNP 168
Query: 188 HLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 221
L++ +IE L A LGV + IWL GL DG
Sbjct: 169 QLSQAEIEASLTAALGVDEFIWLGDGLMNDHTDG 202
Score = 140 (54.3 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 179 CLLNKNRN-PHL-TKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASY 236
C +RN P+ T +IE L ++ G+M + +P G++H G+ P + AS+
Sbjct: 218 CQHPADRNDPNAETLQEIERTLVSH-GLM-VSSIPSP--GLVHFGDGVP------VPASH 267
Query: 237 VNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 296
+NF I N ++ P + D+ + A+ L FP EV+G+ AR I+ GGG+ HC+T++
Sbjct: 268 MNFTITNRAVLVPVYEDR-FSAVALSDLKALFPGREVIGLP-ARAILAGGGSFHCMTREI 325
Query: 297 PA 298
PA
Sbjct: 326 PA 327
>UNIPROTKB|Q5HUL0 [details] [associations]
symbol:CJE1027 "Peptidyl-arginine deiminase family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR007466 Pfam:PF04371
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG2957
GO:GO:0004668 GO:GO:0009446 OMA:CICEDEG RefSeq:YP_179025.1
ProteinModelPortal:Q5HUL0 STRING:Q5HUL0 GeneID:3231538
KEGG:cjr:CJE1027 PATRIC:20043855 HOGENOM:HOG000239345
ProtClustDB:CLSK879009 BioCyc:CJEJ195099:GJC0-1055-MONOMER
Uniprot:Q5HUL0
Length = 325
Score = 223 (83.6 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 58/201 (28%), Positives = 91/201 (45%)
Query: 17 EWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCA-SAAQWENARSQL 75
EW + P +W + + + A+S+F+ V + A + +EN +
Sbjct: 7 EWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVSEFQKVLLIAPKQSDFENFKDI- 65
Query: 76 PENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDW 135
+ + + N +W RD G ++ ++ +D+ FN+WG
Sbjct: 66 -KKVEYFKCDTNDTWIRDFGAIDIIENG---------RLKALDFTFNAWGNKFQS----- 110
Query: 136 SLDLQVARKILST---ERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKG 192
LD V K+ E L + +LEGGSI +GEG LT+ CLLN+NRN HL K
Sbjct: 111 ELDNAVNSKLFKEKFKEELKKV--DFILEGGSIDFNGEGVMLTSSHCLLNENRNSHLNKT 168
Query: 193 QIENELKAYLGVMKIIWLPRG 213
QI+ +LK G+ +IIWL G
Sbjct: 169 QIDIKLKEIFGLKQIIWLENG 189
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 41/139 (29%), Positives = 65/139 (46%)
Query: 160 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIW-LPRGLFGMI 218
LE G I D + T ++KN H E+E YL + K+ L + F ++
Sbjct: 186 LENGFIKGDDTDHHIDTLARFIDKNTIAHCICEDEEDE--HYLPLQKMKEELKKTGFDLV 243
Query: 219 HDGEAKPRL-AGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 277
P G RL A+Y NF N +I P + DK D + LS+A P ++++G++
Sbjct: 244 ELPIPNPLYYEGRRLGATYANFVFINNALIVPFYKDKN-DEIIAKRLSKALPSHKIIGVD 302
Query: 278 RAREIVLGGGNIHCITQQQ 296
AR + G++HC Q +
Sbjct: 303 -ARVFLRQNGSLHCSCQNR 320
>TIGR_CMR|CJE_1027 [details] [associations]
symbol:CJE_1027 "peptidyl-arginine deiminase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0004668
"protein-arginine deiminase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR007466 Pfam:PF04371
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG2957
GO:GO:0004668 GO:GO:0009446 OMA:CICEDEG RefSeq:YP_179025.1
ProteinModelPortal:Q5HUL0 STRING:Q5HUL0 GeneID:3231538
KEGG:cjr:CJE1027 PATRIC:20043855 HOGENOM:HOG000239345
ProtClustDB:CLSK879009 BioCyc:CJEJ195099:GJC0-1055-MONOMER
Uniprot:Q5HUL0
Length = 325
Score = 223 (83.6 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 58/201 (28%), Positives = 91/201 (45%)
Query: 17 EWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCA-SAAQWENARSQL 75
EW + P +W + + + A+S+F+ V + A + +EN +
Sbjct: 7 EWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVSEFQKVLLIAPKQSDFENFKDI- 65
Query: 76 PENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDW 135
+ + + N +W RD G ++ ++ +D+ FN+WG
Sbjct: 66 -KKVEYFKCDTNDTWIRDFGAIDIIENG---------RLKALDFTFNAWGNKFQS----- 110
Query: 136 SLDLQVARKILST---ERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKG 192
LD V K+ E L + +LEGGSI +GEG LT+ CLLN+NRN HL K
Sbjct: 111 ELDNAVNSKLFKEKFKEELKKV--DFILEGGSIDFNGEGVMLTSSHCLLNENRNSHLNKT 168
Query: 193 QIENELKAYLGVMKIIWLPRG 213
QI+ +LK G+ +IIWL G
Sbjct: 169 QIDIKLKEIFGLKQIIWLENG 189
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 41/139 (29%), Positives = 65/139 (46%)
Query: 160 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIW-LPRGLFGMI 218
LE G I D + T ++KN H E+E YL + K+ L + F ++
Sbjct: 186 LENGFIKGDDTDHHIDTLARFIDKNTIAHCICEDEEDE--HYLPLQKMKEELKKTGFDLV 243
Query: 219 HDGEAKPRL-AGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 277
P G RL A+Y NF N +I P + DK D + LS+A P ++++G++
Sbjct: 244 ELPIPNPLYYEGRRLGATYANFVFINNALIVPFYKDKN-DEIIAKRLSKALPSHKIIGVD 302
Query: 278 RAREIVLGGGNIHCITQQQ 296
AR + G++HC Q +
Sbjct: 303 -ARVFLRQNGSLHCSCQNR 320
>UNIPROTKB|Q4KDY9 [details] [associations]
symbol:PFL_2437 "Uncharacterized protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR007466
Pfam:PF04371 EMBL:CP000076 GenomeReviews:CP000076_GR eggNOG:COG2957
GO:GO:0004668 GO:GO:0009446 RefSeq:YP_259544.1
ProteinModelPortal:Q4KDY9 STRING:Q4KDY9 GeneID:3477061
KEGG:pfl:PFL_2437 PATRIC:19874151
BioCyc:PFLU220664:GIX8-2451-MONOMER Uniprot:Q4KDY9
Length = 65
Score = 91 (37.1 bits), Expect = 0.00092, P = 0.00092
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 258 GEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI 299
G+A R+L+ +P +V+ ++ I GGG IHC+T QQP +
Sbjct: 25 GKAHRLLASLYPGRQVIQLD-IDAIAAGGGGIHCVTHQQPGL 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 307 307 0.0010 115 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 624 (66 KB)
Total size of DFA: 256 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.69u 0.11s 22.80t Elapsed: 00:00:02
Total cpu time: 22.69u 0.11s 22.80t Elapsed: 00:00:02
Start: Fri May 10 14:19:11 2013 End: Fri May 10 14:19:13 2013