BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021828
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H7K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Agmatine
Deiminase Complexed With A Covalently Bound Reaction
Intermediate
Length = 383
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 151/215 (70%), Positives = 170/215 (79%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
E +PA HGY PAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTV
Sbjct: 3 ESRESPAEHGYYXPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTV 62
Query: 62 CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
CAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K + +AGIDWNF
Sbjct: 63 CASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNF 122
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
N+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEECLL
Sbjct: 123 NAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEECLL 182
Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
NKNRNPH +K QIE ELK YLGV IWLPRGL+G
Sbjct: 183 NKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 79/105 (75%), Gaps = 7/105 (6%)
Query: 208 IWLPRGLF-------GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 260
+++P L+ G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA
Sbjct: 276 LYIPEPLYXTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEA 335
Query: 261 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAK 305
+RVLS FP + VVGIE AREIVL GGNIH ITQQQPA PT+ A+
Sbjct: 336 IRVLSDTFPHHSVVGIENAREIVLAGGNIHXITQQQPAEPTSVAE 380
>pdb|3H7C|X Chain X, Crystal Structure Of Arabidopsis Thaliana Agmatine
Deiminase From Cell Free Expression
Length = 383
Score = 328 bits (840), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 151/215 (70%), Positives = 170/215 (79%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
E +PA HGY PAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTV
Sbjct: 3 ESRESPAEHGYYXPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTV 62
Query: 62 CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
CAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K + +AGIDWNF
Sbjct: 63 CASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNF 122
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
N+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEECLL
Sbjct: 123 NAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEECLL 182
Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
NKNRNPH +K QIE ELK YLGV IWLPRGL+G
Sbjct: 183 NKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 7/105 (6%)
Query: 208 IWLPRGLF-------GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 260
+++P L+ G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA
Sbjct: 276 LYIPEPLYXTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEA 335
Query: 261 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAK 305
+RVLS FP + VVGIE AREIVL GGNIHCITQQQPA PT+ A+
Sbjct: 336 IRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPTSVAE 380
>pdb|1VKP|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g08170, Agmatine Iminohydrolase
pdb|1VKP|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g08170, Agmatine Iminohydrolase
pdb|2Q3U|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g08170,
Agmatine Iminohydrolase
pdb|2Q3U|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g08170,
Agmatine Iminohydrolase
Length = 383
Score = 327 bits (839), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 151/215 (70%), Positives = 170/215 (79%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV 61
E +PA HGY PAEW+ H+Q W+GWPER DNWR +AL AQRVFA VA AISKFEPVTV
Sbjct: 3 ESRESPAEHGYYXPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTV 62
Query: 62 CASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
CAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K + +AGIDWNF
Sbjct: 63 CASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNF 122
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
N+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEECLL
Sbjct: 123 NAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEECLL 182
Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 216
NKNRNPH +K QIE ELK YLGV IWLPRGL+G
Sbjct: 183 NKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 7/105 (6%)
Query: 208 IWLPRGLF-------GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 260
+++P L+ G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA
Sbjct: 276 LYIPEPLYXTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEA 335
Query: 261 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAK 305
+RVLS FP + VVGIE AREIVL GGNIHCITQQQPA PT+ A+
Sbjct: 336 IRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPTSVAE 380
>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|B Chain B, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|C Chain C, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|D Chain D, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|E Chain E, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|F Chain F, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|G Chain G, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|H Chain H, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction
Length = 389
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 127/210 (60%), Gaps = 9/210 (4%)
Query: 6 TPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASA 65
TP G+ MP E+EP + WM WPER DNWRD Q F VA AIS+F P+ V S
Sbjct: 9 TPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQ 68
Query: 66 AQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWG 125
Q++N R QLP I V EMS N +W RD GP+ V+N ++ G+DW FN+WG
Sbjct: 69 QQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHG--------EIRGVDWTFNAWG 120
Query: 126 GVDDGCYRDWSLDLQVARKILSTERLPRF-PHSMVLEGGSIHVDGEGTCLTTEECLLNKN 184
G+ DG Y W D VA+KI E + + VLEGGS HVDG+GT LTTE CLL++
Sbjct: 121 GLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG 180
Query: 185 RNPHLTKGQIENELKAYLGVMKIIWLPRGL 214
RNP L+K IE +L YL V K++WL G+
Sbjct: 181 RNPQLSKEAIEQKLCDYLNVEKVLWLGDGI 210
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 212 RGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKY 271
+G F + PR G ASY+NF I N G+I PQ+GD+ D A+ + FP
Sbjct: 280 KGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDEN-DRLALEQVQTMFPDK 338
Query: 272 EVVGIERAREIVLGGGNIHCITQQQP 297
++VG+ E+V GGGNIH ITQQ+P
Sbjct: 339 KIVGVNTV-EVVYGGGNIHXITQQEP 363
>pdb|2EWO|A Chain A, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|B Chain B, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|C Chain C, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|D Chain D, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|E Chain E, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|F Chain F, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|G Chain G, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|H Chain H, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|I Chain I, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|J Chain J, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|K Chain K, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|L Chain L, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6
Length = 377
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 133/216 (61%), Gaps = 13/216 (6%)
Query: 4 NGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCA 63
N TP G+ P E+E Q W WP R DNWR A AQ+ F +VA AIS+FEPV++C
Sbjct: 7 NTTPKQDGFRXPGEFEKQKQIWXLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCV 66
Query: 64 SAAQWENARSQLPE----NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDW 119
Q+ENA +++ E NIR+IE + + +W RD GPT +VN + +DW
Sbjct: 67 PPLQYENALARVSELGSHNIRIIEXTNDDAWIRDCGPTFLVNDKG--------DLRAVDW 118
Query: 120 NFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-HSMVLEGGSIHVDGEGTCLTTEE 178
FN+WGG+ DG Y W D VARK+ E + + VLEGGSIHVDGEGT L TE
Sbjct: 119 EFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLEGGSIHVDGEGTVLVTEX 178
Query: 179 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGL 214
CLL+ +RNPHLTK IE++LK YL +K++W+ G+
Sbjct: 179 CLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGI 214
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 225 PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVL 284
PR G ASY+NF I NGGII PQ+GD+ D A + + + FP +VVG+ R EI
Sbjct: 297 PREEGEXAIASYLNFLIVNGGIILPQYGDEN-DQLAKQQVQEXFPDRKVVGV-RTEEIAY 354
Query: 285 GGGNIHCITQQQPA 298
GGGNIHCITQQQPA
Sbjct: 355 GGGNIHCITQQQPA 368
>pdb|1XKN|A Chain A, Crystal Structure Of The Putative Peptidyl-Arginine
Deiminase From Chlorobium Tepidum, Nesg Target Ctr21
Length = 355
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 109/220 (49%), Gaps = 19/220 (8%)
Query: 12 YLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTV-CASAAQWEN 70
Y P EW PH+ W+ WP +L++W VFA++A +S+ E V + A
Sbjct: 6 YFXPPEWAPHASTWLSWPHKLESWPGKFEPVPAVFAELAYQLSRSETVNINVLDDAXEAQ 65
Query: 71 ARSQLPEN---------IRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNF 121
AR L E I + N +W RD GP V+ + + KV +W +
Sbjct: 66 ARELLKERDPEGKYAERIVFHRIPTNDAWCRDHGPNYVIR----TQDGRRDKVI-XNWEY 120
Query: 122 NSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLL 181
N+WGG Y + D V ++ + LP VLEGG+I V+G G LTT CLL
Sbjct: 121 NAWGGK----YEPYDDDNAVPERVAKAQGLPXVSTGXVLEGGAIDVNGAGLLLTTTACLL 176
Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 221
N NRNP L K +IE +L+ YLG+ K++WL G+ G DG
Sbjct: 177 NPNRNPSLGKAEIEAQLRRYLGIEKVLWLGDGIAGDDTDG 216
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 229 GTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGN 288
G RL ASY NFYIAN ++ P + + D +A+ +L Q FPK EVVGI+ +++ G G
Sbjct: 279 GERLPASYANFYIANTVVLVPTYRCPR-DQQAIDILQQCFPKREVVGID-CSDLIWGLGA 336
Query: 289 IHCITQQQPA 298
IHC+T ++PA
Sbjct: 337 IHCVTHEEPA 346
>pdb|1ZBR|A Chain A, Crystal Structure Of The Putative Arginine Deiminase From
Porphyromonas Gingivalis, Northeast Structural Genomics
Target Pgr3
pdb|1ZBR|B Chain B, Crystal Structure Of The Putative Arginine Deiminase From
Porphyromonas Gingivalis, Northeast Structural Genomics
Target Pgr3
Length = 349
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 136/348 (39%), Gaps = 79/348 (22%)
Query: 13 LMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEP-VTVCASAAQ-WEN 70
L EW P + WP +W + F ++ATAI + E + VC + +
Sbjct: 5 LFLPEWAPQEAVQLTWPHDRTDWAYXLDEVETCFVRIATAILRHERLIVVCPDRKRVFGL 64
Query: 71 ARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGV--- 127
+L + E+ N +W RD G ++ P +A D+ FN WG
Sbjct: 65 LPPELHHRLYCFELPSNDTWARDHGGISLLADGR-------PXIA--DFAFNGWGXKFAA 115
Query: 128 --DDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNR 185
D+ R A + RL + VLEGG++ DGEGT LTT+ CL NR
Sbjct: 116 HHDNLITRRLHALGLFAEGVTLDNRL-----AFVLEGGALETDGEGTLLTTDSCLFEPNR 170
Query: 186 NPHLTKGQIENELKAYLGVMKIIWLPRG-LFGMIHDG--EAKPRLAGTR----------- 231
N L++ I + LK LGV +++ L G L G DG + R TR
Sbjct: 171 NAGLSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIVYVRSEDPS 230
Query: 232 ------------------------------------------LAASYVNFYIANGGIITP 249
L A+Y NF I NG ++ P
Sbjct: 231 DEHYSDLTAXEQELKELRRPDGQPYRLVPLPXAEALYDGADRLPATYANFLIINGAVLVP 290
Query: 250 QFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQP 297
+ D D A+ V FP EV+GI+ R +V G++HC+T Q P
Sbjct: 291 TY-DSHLDAVALSVXQGLFPDREVIGID-CRPLVKQHGSLHCVTXQYP 336
>pdb|3HVM|A Chain A, Agmatine Deiminase From Helicobacter Pylori
Length = 330
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 21/205 (10%)
Query: 14 MPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQ---WEN 70
M AE+E M +P +W A+ F + I+K V VC +E
Sbjct: 4 MLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIGYEM 63
Query: 71 ARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDG 130
++ LP + + ++ N +W RD G + N + +D+ FN WG
Sbjct: 64 LKN-LP-GVEIAKVDTNDTWARDFGAISIENHGV---------LECLDFGFNGWG----- 107
Query: 131 CYRDWSLDLQVARKILSTERLPRFPHSM--VLEGGSIHVDGEGTCLTTEECLLNKNRNPH 188
+LD QV K+ S L +M VLEGGSI DG G+ LT +CLL KNRNPH
Sbjct: 108 LKYPSNLDNQVNFKLKSLGFLKHPLKTMPYVLEGGSIESDGAGSILTNTQCLLEKNRNPH 167
Query: 189 LTKGQIENELKAYLGVMKIIWLPRG 213
L + IE LK LG +++W G
Sbjct: 168 LNQNGIETMLKKELGAKQVLWYSYG 192
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 182 NKNRNPHLTKGQIENELKAYLGVMKIIW--LPRGLFGMIHDGEAKPRLAGTRLAASYVNF 239
+KN + +++ ELK + + K + +P + I D + RL A+YVNF
Sbjct: 222 DKNDEHYTALKKMQEELKTFKKLDKTPYKLIPLEIPKAIFDENQQ------RLPATYVNF 275
Query: 240 YIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQ 295
+ N +I P + D K D + L Q P EV+G++ ++ G++HC+T Q
Sbjct: 276 LLCNDALIVPTYNDPK-DALILETLKQHTP-LEVIGVD-CNTLIKQHGSLHCVTMQ 328
>pdb|2CMU|A Chain A, Crystal Structure Of A Putative Peptidyl-Arginine
Deiminase
Length = 342
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 16 AEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQ---WENAR 72
AE+E +P +W A+ F + I+K V VC +E +
Sbjct: 8 AEFEKIQAILXAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIGYEXLK 67
Query: 73 SQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCY 132
+ LP + + ++ N +W RD G + N + +D+ FN WG
Sbjct: 68 N-LP-GVEIAKVDTNDTWARDFGAISIENHGV---------LECLDFGFNGWG-----LK 111
Query: 133 RDWSLDLQVARKILSTERL--PRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLT 190
+LD QV K+ S L P VLEGGSI DG G+ LT +CLL KNRNPHL
Sbjct: 112 YPSNLDNQVNFKLKSLGFLKHPLKTXPYVLEGGSIESDGAGSILTNTQCLLEKNRNPHLN 171
Query: 191 KGQIENELKAYLGVMKIIWLPRG 213
+ IE LK LG +++W G
Sbjct: 172 QNGIETXLKKELGAKQVLWYSYG 194
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 231 RLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIH 290
RL A+YVNF + N +I P + D K D + L Q P EV+G++ ++ G++H
Sbjct: 269 RLPATYVNFLLCNDALIVPTYNDPK-DALILETLKQHTP-LEVIGVD-CNTLIKQHGSLH 325
Query: 291 CITQQ 295
C+T Q
Sbjct: 326 CVTXQ 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,067,858
Number of Sequences: 62578
Number of extensions: 422844
Number of successful extensions: 822
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 21
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)