Query 021828
Match_columns 307
No_of_seqs 156 out of 810
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2957 Peptidylarginine deimi 100.0 6.8E-99 1E-103 696.4 28.2 284 2-299 5-346 (346)
2 PLN02690 Agmatine deiminase 100.0 4.8E-95 1E-99 701.8 31.9 296 3-299 1-373 (374)
3 PRK13551 agmatine deiminase; P 100.0 5.5E-95 1.2E-99 699.2 31.8 286 3-298 1-360 (362)
4 TIGR03380 agmatine_aguA agmati 100.0 9.1E-95 2E-99 696.5 31.5 284 5-298 1-357 (357)
5 PF04371 PAD_porph: Porphyromo 100.0 1.8E-90 3.8E-95 662.3 18.9 271 12-297 1-329 (329)
6 PF02274 Amidinotransf: Amidin 98.5 7.3E-06 1.6E-10 76.4 15.7 205 38-296 26-279 (281)
7 COG1834 N-Dimethylarginine dim 98.4 8.5E-06 1.9E-10 76.1 13.9 141 138-295 93-266 (267)
8 PRK01388 arginine deiminase; P 96.6 0.016 3.4E-07 57.7 10.2 87 193-296 314-401 (406)
9 TIGR01078 arcA arginine deimin 96.0 0.0096 2.1E-07 59.2 5.2 52 237-296 348-400 (405)
10 COG2235 ArcA Arginine deiminas 92.4 0.18 3.8E-06 50.1 4.6 90 191-296 314-404 (409)
11 PF08260 Kinin: Insect kinin p 62.1 3.2 6.9E-05 18.5 0.3 6 120-125 3-8 (8)
12 COG3724 AstB Succinylarginine 51.9 68 0.0015 31.5 7.7 148 133-298 209-372 (442)
13 PF04343 DUF488: Protein of un 47.7 20 0.00042 29.2 3.0 29 182-212 24-52 (122)
14 PF05005 Ocnus: Janus/Ocnus fa 46.9 19 0.00041 29.4 2.8 24 249-273 85-108 (108)
15 COG0603 Predicted PP-loop supe 46.7 47 0.001 30.6 5.6 85 114-211 29-123 (222)
16 PF01912 eIF-6: eIF-6 family; 41.4 1.1E+02 0.0024 27.8 7.0 58 136-205 115-175 (199)
17 TIGR00323 eIF-6 translation in 35.0 2E+02 0.0043 26.3 7.8 52 142-205 117-171 (215)
18 cd02520 Glucosylceramide_synth 30.4 69 0.0015 27.4 3.9 33 245-277 4-37 (196)
19 smart00654 eIF6 translation in 30.3 4.1E+02 0.0088 23.9 9.6 60 137-205 117-176 (200)
20 COG1834 N-Dimethylarginine dim 29.6 90 0.002 29.6 4.7 38 239-277 123-161 (267)
21 PF04996 AstB: Succinylarginin 28.8 1.7E+02 0.0037 29.4 6.6 142 133-297 208-369 (439)
22 PF00535 Glycos_transf_2: Glyc 27.9 62 0.0013 25.6 3.0 35 245-279 1-36 (169)
23 KOG3432 Vacuolar H+-ATPase V1 27.3 74 0.0016 26.3 3.2 27 181-207 30-63 (121)
24 COG0191 Fba Fructose/tagatose 26.9 1.5E+02 0.0032 28.5 5.6 43 137-209 191-233 (286)
25 TIGR03472 HpnI hopanoid biosyn 26.7 77 0.0017 30.7 3.8 33 245-277 44-77 (373)
26 cd04823 ALAD_PBGS_aspartate_ri 26.0 74 0.0016 30.9 3.5 35 257-294 96-130 (320)
27 PF02177 APP_N: Amyloid A4 N-t 25.8 75 0.0016 25.8 3.0 22 256-277 36-57 (102)
28 TIGR03241 arg_catab_astB succi 25.7 7.1E+02 0.015 25.2 11.4 151 132-300 207-377 (443)
29 COG1171 IlvA Threonine dehydra 24.8 74 0.0016 31.3 3.3 23 191-213 85-107 (347)
30 PRK13373 putative dioxygenase; 24.5 3.3E+02 0.0072 26.8 7.7 104 19-154 10-118 (344)
31 PF05265 DUF723: Protein of un 24.2 93 0.002 22.9 2.9 38 258-295 6-47 (60)
32 TIGR00550 nadA quinolinate syn 23.5 1.2E+02 0.0027 29.2 4.5 69 227-295 58-131 (310)
33 PRK13364 protocatechuate 4,5-d 23.5 3.6E+02 0.0078 25.5 7.6 187 39-287 30-234 (278)
34 PF03068 PAD: Protein-arginine 22.8 77 0.0017 31.6 3.0 59 235-295 307-371 (385)
35 cd00527 IF6 Ribosome anti-asso 22.6 6E+02 0.013 23.2 8.9 100 68-205 78-177 (220)
36 PRK10018 putative glycosyl tra 22.1 92 0.002 29.2 3.3 36 245-280 8-44 (279)
37 PRK13384 delta-aminolevulinic 22.0 1E+02 0.0022 29.9 3.6 35 257-294 101-135 (322)
38 PRK08228 L(+)-tartrate dehydra 21.5 1.8E+02 0.0039 26.5 4.9 55 48-102 111-171 (204)
39 COG1976 TIF6 Translation initi 20.5 2.2E+02 0.0047 26.2 5.2 62 137-207 118-179 (222)
40 cd00384 ALAD_PBGS Porphobilino 20.1 1.2E+02 0.0026 29.4 3.6 35 257-294 91-125 (314)
No 1
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-99 Score=696.40 Aligned_cols=284 Identities=51% Similarity=0.902 Sum_probs=267.0
Q ss_pred CCCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC-CCeE
Q 021828 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP-ENIR 80 (307)
Q Consensus 2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~-~~v~ 80 (307)
.+.+||+..+||||||||||+++||+|||+.++|+.++.+||++|+++|++||+||+|+|+|+.++++.++++|+ .+|+
T Consensus 5 ~~~~tpr~~gf~mpaEwep~~a~~m~wP~~~~~W~~~l~~aq~~f~~~~~aIarfe~V~l~V~~~~~~~a~a~l~~~~V~ 84 (346)
T COG2957 5 PFKGTPRLLGFRMPAEWEPQEAIWMAWPHRPDDWRGHLKPAQQAFAALAKAIARFERVLLCVPDDDLEDARARLDDANVE 84 (346)
T ss_pred CCCCCCchhcccCCcccCchhceeEeccCCccchhhhHHHHHHHHHHHHHHHhccceEEEEechHHHHHHHhhcCCCceE
Confidence 357899999999999999999999999999999999999999999999999999999999999999889999998 7999
Q ss_pred EEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcC-CCcccccce
Q 021828 81 VIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTER-LPRFPHSMV 159 (307)
Q Consensus 81 ~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g-~~~~~~~lv 159 (307)
++++++||+|+||+||+||++++|+ ++++||+||+||| .|++|+.|++|+.++++..+ .++.+.++|
T Consensus 85 ~~~i~~nDtW~RDtGP~~~i~~~g~--------~~a~d~~FNaWGG----lkf~~e~Dd~Va~k~~~~~~k~~~~~~~fi 152 (346)
T COG2957 85 IVRIDTNDTWLRDTGPTIVINDKGD--------LRAVDFGFNAWGG----LKFPWELDDQVASKLAELLFKAPLKTDPFI 152 (346)
T ss_pred EEEccCCCcHhhccCCcEEecCCCc--------EEEecceeccccc----cccccccchHHHHHHHHhhccCccccCCee
Confidence 9999999999999999999999998 9999999999997 36899999999999999876 667788999
Q ss_pred ecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-----------------------
Q 021828 160 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG----------------------- 216 (307)
Q Consensus 160 lEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g----------------------- 216 (307)
||||+|++||+||+|||++||||+||||+|||++||..|+++||++|||||++|+.|
T Consensus 153 LEGGsi~~dG~Gt~LTT~~CLLn~nRNPhl~~~~ie~~L~e~Lg~kkvlWL~~Gl~~D~TDgHiDtlarFv~p~~iv~~~ 232 (346)
T COG2957 153 LEGGSIHSDGEGTLLTTEQCLLNDNRNPHLNQEGIENKLKEYLGAKKVLWLEYGLKNDDTDGHIDTLARFVAPGEIVLSW 232 (346)
T ss_pred eecCceeecCceeEEeehHhhcCCCCCCCcCHHHHHHHHHHHhCccEEEEccCCCcCCcccchhhhhhhhcCCCeEEEEe
Confidence 999999999999999999999999999999999999999999999999999999877
Q ss_pred -------------------------------cccCCCCccc--ccCccccccceeEEEECCeEEeccCCCchhHHHHHHH
Q 021828 217 -------------------------------MIHDGEAKPR--LAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRV 263 (307)
Q Consensus 217 -------------------------------l~~~p~~~~~--~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~ 263 (307)
|+++|-|.+. ++|+|++|||+||||+|++||||+|+|+ +|+.|+++
T Consensus 233 ~dde~Dp~y~~~q~~~~~L~~~~d~~G~~~~l~~Lp~P~~~~~e~~~rL~aSY~NFlI~N~avIvP~y~D~-~D~~a~~~ 311 (346)
T COG2957 233 CDDENDPHYAALQAMLEELKELRDAKGRPLKLHKLPIPKPVTDEDGERLPASYVNFLIINGAVIVPQYDDP-NDALALDV 311 (346)
T ss_pred cCCCCChhHHHHHHHHHHHHhccccCCCeeEEEEcCCCcccccccCCCCcccceeEEEecCeEEeeccCCc-chHHHHHH
Confidence 3334433332 4589999999999999999999999999 99999999
Q ss_pred HHHhCCCCEEEecCchhHHhhCCCceeeecCccCCC
Q 021828 264 LSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI 299 (307)
Q Consensus 264 l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~ 299 (307)
|+++||+|+||||+ |++|+.+||||||||||+|++
T Consensus 312 L~~~fP~reVVGVp-~r~il~ggGs~HCiTqQ~p~~ 346 (346)
T COG2957 312 LQQAFPGREVVGVP-AREILLGGGSLHCITQQIPAG 346 (346)
T ss_pred HHHhCCCCeEeccc-cHHheecCCceEEEeecccCC
Confidence 99999999999999 999999999999999999974
No 2
>PLN02690 Agmatine deiminase
Probab=100.00 E-value=4.8e-95 Score=701.76 Aligned_cols=296 Identities=75% Similarity=1.277 Sum_probs=264.8
Q ss_pred CCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC--CCeE
Q 021828 3 MNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP--ENIR 80 (307)
Q Consensus 3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~--~~v~ 80 (307)
+..+|+..+||||||||||++|||+|||+.++|+..+.++|++|++||++|++||||+|+|++++.+.+++++. .+|+
T Consensus 1 ~~~~p~~~~~rmPaEwep~~~~wmawP~~~~~w~~~l~~~~~~~~~ia~aia~~e~V~~~~~~~~~~~~~~~l~~~~~v~ 80 (374)
T PLN02690 1 GRATPKELGYRMPAEWEPHAGCWMGWPERPDNWRDNAKPAQQQFAAVAKAISKFEPVTVCASPAQWENAREQLPGVSNVR 80 (374)
T ss_pred CCCCccCCCceeCCCcCccccEEEEcCCCCccchhhhHHHHHHHHHHHHHHhcCCCEEEEECHHHHHHHHHhcccCCceE
Confidence 35789999999999999999999999999999999999999999999999999999999999888888888886 5999
Q ss_pred EEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccccccee
Q 021828 81 VIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVL 160 (307)
Q Consensus 81 ~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lvl 160 (307)
|+++|+||+|+||+||+||+++++..+..+.++++++||+||+||+|.++||++|..|++++++|++..|++.++++||+
T Consensus 81 ~~~~~~~D~W~RD~GP~fv~~~~~~~~~~~~~~~~~vdf~FN~WG~~~~gk~~~~~~D~~v~~~la~~~g~~~~~~~lvl 160 (374)
T PLN02690 81 VVEMSMNDSWFRDTGPTFVVRDVPVDSSSGEREVAGIDWDFNAWGGALKGCYPDWSLDLLVARKILEAERLPRFPHSMIL 160 (374)
T ss_pred EEEcCCCCchhhccCCeEEEcCCccccccccCcEEEEeeeeecCCCcccCCcCCcchHHHHHHHHHHHcCCCeecCCeEE
Confidence 99999999999999999999763100000111288999999999998778888999999999999999999999999999
Q ss_pred cCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC------------------------
Q 021828 161 EGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG------------------------ 216 (307)
Q Consensus 161 EGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g------------------------ 216 (307)
|||||++||+||+||||+||||+||||++||+|||++||++||++||||||+|+.|
T Consensus 161 EGGsie~DG~GtlltTe~clln~nRNP~lsk~~ie~~Lk~~LGv~kvIWL~~g~~~DddTdGHID~larFv~~~tvl~~~ 240 (374)
T PLN02690 161 EGGSIHVDGEGTCLTTEECLLNPNRNPHLTKEEIEEELKEYLGVEKVIWLPRGLYGDDDTNGHVDNMCCFARPGVVLLSW 240 (374)
T ss_pred cCCcEEECCCceEEEehhhhcCCCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCcCCCCCCCccceeeEEecCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999987643
Q ss_pred -------------------------------cccCCCCcc-------------------cccCccccccceeEEEECCeE
Q 021828 217 -------------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGGI 246 (307)
Q Consensus 217 -------------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~V 246 (307)
|+++|.|.+ +..|+++++||+|||++|++|
T Consensus 241 ~~d~~d~~y~~~~~~~~~L~~~~da~Gr~~~i~~lP~P~~~~~~~~~~~g~~~~~~~~~~~~g~~l~aSY~Nfli~N~~V 320 (374)
T PLN02690 241 TDDEDDPQYERSVEALSILSNTTDARGRKLQVIKLHVPGPLYMTFEEASGVAQDGAAKPRLAGERLAASYVNFYIANGGI 320 (374)
T ss_pred cCCCCCccHHHHHHHHHHHHhhhhccCCccEEEEecCCCccccccccccccccccccccccCCCcccccceeEEEECCEE
Confidence 222333321 124779999999999999999
Q ss_pred EeccCCCchhHHHHHHHHHHhCCCCEEEec-CchhHHhhCCCceeeecCccCCC
Q 021828 247 ITPQFGDKKWDGEAVRVLSQAFPKYEVVGI-ERAREIVLGGGNIHCITQQQPAI 299 (307)
Q Consensus 247 ivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I-~~~~~l~~~GG~iHCiT~q~P~~ 299 (307)
|||+||++++|++|+++||++||+|+||+| + |++|+.+||||||+|||+|+.
T Consensus 321 ivP~fgd~~~D~~A~~~l~~~fP~r~Vv~i~~-~~~l~~~GG~iHCiTqQ~P~~ 373 (374)
T PLN02690 321 VAPQFGDAKWDKEAIEVLSEAFPNHKVVGVES-AREIVLGGGNIHCITQQQPAE 373 (374)
T ss_pred EEecCCCCcccHHHHHHHHHHCCCCeEEEecC-HHHHHhCCCccEEeeccCcCC
Confidence 999999944899999999999999999999 9 999999999999999999974
No 3
>PRK13551 agmatine deiminase; Provisional
Probab=100.00 E-value=5.5e-95 Score=699.16 Aligned_cols=286 Identities=61% Similarity=1.032 Sum_probs=266.2
Q ss_pred CCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEEE
Q 021828 3 MNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVI 82 (307)
Q Consensus 3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~~v~~~ 82 (307)
++.+|+..+||||||||||+++||+|||..++|+..+.+++++|++||++|+++|||+|+|++++.+.++++|+.+|+|+
T Consensus 1 ~~~~~~~~~~~~PaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~ia~~ia~~e~V~~~v~~~~~~~~~~~l~~~i~~~ 80 (362)
T PRK13551 1 LNSTPKQDGFRMPAEWEPHDAVWMIWPERPDNWRLGGKPAQAAFAKVAEAIARFEPVTMGVSAAQYANARARLPDNVRVV 80 (362)
T ss_pred CCCCccCCCceeCCCcCccccEEEEcCCCCcccccchhhHHHHHHHHHHHHhCCCcEEEEECHHHHHHHHHhcccCeEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999888777888888899999
Q ss_pred EeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccc-cceec
Q 021828 83 EMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPH-SMVLE 161 (307)
Q Consensus 83 ~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~-~lvlE 161 (307)
++|+||+|+||+||+||.+.+|+ +++|||+||+||+|.+++|+++..|++++++|++.+|++.+++ +||+|
T Consensus 81 ~~p~~D~W~RD~GP~fv~~~~g~--------~~~vdf~FNgWG~k~~~~~~~~~~D~~v~~~la~~~g~~~~~~~~lvlE 152 (362)
T PRK13551 81 EMSSDDAWVRDTGPTFVINDKGE--------VRGVDWGFNAWGGLVGGLYFPWDKDDQVAQKVLEIEGRDRYRAKPFVLE 152 (362)
T ss_pred ECCCCCeeecccCCeEEEcCCCC--------EEEEeeeeecCCCcccCccCCCccHHHHHHHHHHHcCCCcccccCeEEc
Confidence 99999999999999999987777 8999999999999988888899999999999999999999887 99999
Q ss_pred CCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-------------------------
Q 021828 162 GGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG------------------------- 216 (307)
Q Consensus 162 GG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g------------------------- 216 (307)
||||++||+||+||||+||||+||||++||+|||++||++||++||||||+|+.|
T Consensus 153 GG~ie~DG~GtlltTe~clln~nRNP~ls~~~ie~~Lk~~LGv~kvIWL~~g~~~DdTdGHiD~~arFv~~~~vl~~~~~ 232 (362)
T PRK13551 153 GGSIHVDGEGTLLTTEECLLNPNRNPHLTKEQIEQLLRDYLGVEKVIWLPDGIYNDETDGHVDNVCCFVRPGEVALAWTD 232 (362)
T ss_pred CCcEEECCCeEEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcchhheEEeeCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999988654
Q ss_pred -----------------------------cccCCCCcc-------------------cccCccccccceeEEEECCeEEe
Q 021828 217 -----------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGGIIT 248 (307)
Q Consensus 217 -----------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~Viv 248 (307)
|+++|.|.+ +.+|+++++||+|||++|++|||
T Consensus 233 d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP~P~~~~~~~~~~~~~~~~~~~~~~~~g~~l~asY~Nfli~N~~Viv 312 (362)
T PRK13551 233 DENDPQYARSKAALEVLENTTDAKGRKLKVHKLPIPGPLYATEEESAGVDAVEGTVPREAGERLAASYVNFLIANGGIIF 312 (362)
T ss_pred CCCCccHHHHHHHHHHHHhhhhccCCccEEEEecCCCccccccccccccccccccccccCCCccccceeeEEEECCEEEE
Confidence 222333321 12467899999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021828 249 PQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 298 (307)
Q Consensus 249 P~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~ 298 (307)
|+||++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+
T Consensus 313 P~fg~~-~D~~A~~~l~~~fP~r~Vv~I~-~~~i~~~gG~iHCiT~q~P~ 360 (362)
T PRK13551 313 PLFDDP-NDALALEILQQMFPDRKVVGVP-AREILLGGGNIHCITQQIPA 360 (362)
T ss_pred ecCCCc-hhHHHHHHHHHHCCCCeEEEEE-cHHHHhcCCcceEccccccC
Confidence 999998 9999999999999999999999 99999999999999999997
No 4
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=100.00 E-value=9.1e-95 Score=696.53 Aligned_cols=284 Identities=63% Similarity=1.053 Sum_probs=263.5
Q ss_pred CCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEEEEe
Q 021828 5 GTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEM 84 (307)
Q Consensus 5 ~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~~v~~~~~ 84 (307)
.+|+..+||||||||||++|||+|||..++|+..+.++|++|++||++||+||||+|+|++++.+.++++|..+|+++++
T Consensus 1 ~~~~~~~~rmPaEwep~~~~wlawP~~~~~w~~~~~~~~~~~~~ia~aia~~e~V~~~~~~~~~~~~~~~l~~~v~~~~~ 80 (357)
T TIGR03380 1 TTPKQDGFRMPAEFEPQAQCWMIWPERPDNWRNGAKPAQKAFAEVAEAIAEFEPVTMLVSPAQYENARAQLPSNIRVVEM 80 (357)
T ss_pred CCccCCCceeCCCcCccccEEEEcCCCCcccccchhHHHHHHHHHHHHHhCCCCEEEEECHHHHHHHHHhcccCeEEEEC
Confidence 36788899999999999999999999999999999999999999999999999999999888877788888889999999
Q ss_pred CCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccceecCCc
Q 021828 85 SMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGS 164 (307)
Q Consensus 85 ~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lvlEGG~ 164 (307)
|+||+|+||+||+||.+++|+ +++|||+||+||+|..+||+++..|++++++|++.+|++.++++||+||||
T Consensus 81 p~~D~W~RD~GP~fv~~~~g~--------~~~vdf~FNgWG~k~~~k~~~~~~D~~v~~~ia~~~g~~~~~~~lvlEGG~ 152 (357)
T TIGR03380 81 SSNDAWMRDTGPTFVVNDKGE--------IRGVDWEFNAWGGLVDGLYFPWDKDDLVARKVCELEGIDRYRADFVLEGGS 152 (357)
T ss_pred CCCCchhhcCCCEEEEcCCCC--------EEEEeeeeecccCcccCccCCcchHHHHHHHHHHHcCCCccccCeEEeCCc
Confidence 999999999999999988777 899999999999987778889999999999999999999999999999999
Q ss_pred eEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC----------------------------
Q 021828 165 IHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG---------------------------- 216 (307)
Q Consensus 165 i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g---------------------------- 216 (307)
|++||+||+||||+||||+||||+|||+|||++||++||++||||||+|+.|
T Consensus 153 ie~dG~GtlltTe~clln~nRNP~ls~~eIe~~Lk~~LGv~kviWL~~g~~~DdTdGHID~~arFv~~~tvl~~~~~d~~ 232 (357)
T TIGR03380 153 IHVDGEGTLLTTEECLLSEGRNPHLTKEQIEEKLKDYLGVEKVIWLPDGLYNDETNGHVDNLCCFVRPGEVALSWTDDES 232 (357)
T ss_pred EEECCCeeEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcceeeEEEeCCCEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999988654
Q ss_pred --------------------------cccCCCCcc-------------------cccCccccccceeEEEECCeEEeccC
Q 021828 217 --------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGGIITPQF 251 (307)
Q Consensus 217 --------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~VivP~f 251 (307)
|+++|.|.+ +.+|+++++||+|||++|++||||+|
T Consensus 233 d~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP~f 312 (357)
T TIGR03380 233 DPQYEISKEAYDVLSNTTDAKGRKLKVHKLPIPGPLYITEEEAAGVDPVEGTLPREAGERLAASYVNFYIANGGIILPLF 312 (357)
T ss_pred CccHHHHHHHHHHHHhhhhccCCccEEEEecCCCccccccccccccccccccccccCCCCcccceeeEEEECCEEEEecC
Confidence 222333321 11366899999999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021828 252 GDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 298 (307)
Q Consensus 252 g~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~ 298 (307)
|++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+
T Consensus 313 g~~-~D~~A~~~l~~~fP~r~Vv~I~-~~~i~~~gG~iHCiT~q~P~ 357 (357)
T TIGR03380 313 DDP-NDKLAQQQLQELFPDRKVVGVP-AREILLGGGNIHCITQQQPA 357 (357)
T ss_pred CCc-hhHHHHHHHHHHCCCCeEEEEE-cHHHHhCCCccEEeecCCCC
Confidence 998 9999999999999999999999 99999999999999999995
No 5
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=100.00 E-value=1.8e-90 Score=662.32 Aligned_cols=271 Identities=51% Similarity=0.924 Sum_probs=228.1
Q ss_pred ccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCC-CeEEEEeCCCCcc
Q 021828 12 YLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPE-NIRVIEMSMNGSW 90 (307)
Q Consensus 12 ~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~-~v~~~~~~~~D~W 90 (307)
||||||||||++|||+|||..+.|+..++++|++|++||++|++||||+|+|++++.+.|+++|.. +|+++.++++|+|
T Consensus 1 fr~paEwep~~~~~~~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~~~v~~~~~~~a~~~l~~~~v~~~~~~~~D~W 80 (329)
T PF04371_consen 1 FRMPAEWEPHEATWMAWPHREDDWPEGLDPAQQEYAAIAKAIARFEPVTMLVNPEDYAQARELLGSQNVTFVEAPTDDIW 80 (329)
T ss_dssp EEE--TTS-EEEEEEE--SSTTCSGGGHHHHHHHHHHHHHHHHTTSEEEEEESTTHHHHHHHHHCTTTEEEEE---SSS-
T ss_pred CCCCCCcchhheEEEEcCCCCcchhhHHHHHHHHHHHHHHHHhCCCCEEEEECcHHHHHHHHhCCCceEEEEEccCCCch
Confidence 799999999999999999999999999999999999999999999999999999998899999986 9999999999999
Q ss_pred ccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccceecCCceEECCC
Q 021828 91 FRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGE 170 (307)
Q Consensus 91 ~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lvlEGG~i~~dG~ 170 (307)
+|||||+||.+++|+ +++|+|+||+||+| +++..|+++++++|+.+|+++++++|++|||||++||+
T Consensus 81 ~RD~GP~~v~~~~g~--------~~~vdf~fN~wG~k-----~~~~~D~~~~~~~a~~~~~~~~~~~lvlEGG~i~~dG~ 147 (329)
T PF04371_consen 81 CRDYGPIFVVDDDGQ--------LRAVDFRFNGWGGK-----YPWDLDNQVARKIAKALGLPVIKSPLVLEGGNIESDGE 147 (329)
T ss_dssp HHHHS-EEEEEETTE--------EEEEEEE--HHHHT-----S--TTGGGHHHHHHHHHTTTEEEEEEE--GGGEEEESS
T ss_pred hcccCceEEEecCCc--------EEEEeeeecCcccc-----CCcchHHHHHHHHHHHhCCCcccCCeEEecCcEEECCC
Confidence 999999999988887 99999999999995 47899999999999999999999999999999999999
Q ss_pred ceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC----------------------------------
Q 021828 171 GTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG---------------------------------- 216 (307)
Q Consensus 171 GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g---------------------------------- 216 (307)
||+|||++||||+||||++||+|||++|+++||++||||||+|+.+
T Consensus 148 Gtli~Te~~ll~~nRNp~~s~~eie~~L~~~lG~~kviwL~~g~~~~d~t~GHiD~~arFv~~~~vl~~~~~d~~d~~~~ 227 (329)
T PF04371_consen 148 GTLITTESCLLNPNRNPGLSKAEIEAELKRYLGVEKVIWLPHGLLGDDDTDGHIDGIARFVDPGTVLVSRCDDPSDPNYE 227 (329)
T ss_dssp SEEEEEHHHHTSTTTSTTS-HHHHHHHHHHHHT-SEEEEESS-STTTTTTSS-GGGTEEEEETTEEEEEE-S-TTSTTHH
T ss_pred ceEEEEeeeEecCccCccCCHHHHHHHHHHHhCCCEEEEecCCcCCCCCcCCccceeEEecCCCEEEEEecCCCCCcCHH
Confidence 9999999999999999999999999999999999999999987432
Q ss_pred ---------------------cccCCCCc--ccccCccccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCCCCEE
Q 021828 217 ---------------------MIHDGEAK--PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEV 273 (307)
Q Consensus 217 ---------------------l~~~p~~~--~~~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP~r~V 273 (307)
|+++|.+. .+.+|.++++||+|||++|++||||+||++ +|++|+++||++||+|+|
T Consensus 228 ~~~~~~~~L~~~~da~G~~~~i~~lp~p~~~~~~~~~~~~~sY~Nfli~n~~VivP~fg~~-~D~~Al~~l~~~fP~r~V 306 (329)
T PF04371_consen 228 RLEENLEILSAATDADGRPFEIVELPLPDPPYDEDGERLPASYVNFLITNGAVIVPVFGDP-ADEAALEILQEAFPDRKV 306 (329)
T ss_dssp HHHHHHHHHHT-B-TTSSB-EEEEEEB-SS-BETTTEEE--BTT--EEETTEEEEEE-SST-THHHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHHhhhccCCCeeEEEEecCCCcccccCCcCccceeeeeEEECCEEEEccCCCh-HHHHHHHHHHHHCCCCEE
Confidence 11112221 234577899999999999999999999999 999999999999999999
Q ss_pred EecCchhHHhhCCCceeeecCccC
Q 021828 274 VGIERAREIVLGGGNIHCITQQQP 297 (307)
Q Consensus 274 v~I~~~~~l~~~GG~iHCiT~q~P 297 (307)
|+|+ |++|+.+||||||+|||+|
T Consensus 307 v~i~-~~~l~~~GG~iHC~T~q~P 329 (329)
T PF04371_consen 307 VGID-ARELIEGGGGIHCITQQQP 329 (329)
T ss_dssp EEEE-THHHHTTT--TGGGEEEEE
T ss_pred EEEe-HHHHHhCCCccEEccccCc
Confidence 9999 9999999999999999998
No 6
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=98.45 E-value=7.3e-06 Score=76.44 Aligned_cols=205 Identities=19% Similarity=0.200 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEe
Q 021828 38 DALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGI 117 (307)
Q Consensus 38 ~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~v 117 (307)
....|++++.++++++.+. -|.|+.-+.... .--.|-+++||.+=+ . . + .++
T Consensus 26 ~~~~a~~e~~~l~~~L~~~-Gv~V~~~~~~~~-------------~~~p~~vF~rD~~~~--~-~-~----------~~i 77 (281)
T PF02274_consen 26 DPEKAREEHDALVEALRSN-GVEVIELPPLLE-------------EPLPDMVFTRDPGVV--I-G-G----------GVI 77 (281)
T ss_dssp -HHHHHHHHHHHHHHHHTT-T-EEEEEHHHHH-------------TT-TTTT-TTCCEEE--E-C-T----------EEE
T ss_pred hHHHHHHHHHHHHHHHHhC-CcEEEEeCCccC-------------CCCCCeEEcCCcEEE--E-c-C----------CEE
Confidence 4577888888888888766 333332222111 012566999998843 2 2 1 344
Q ss_pred eeeeccCCCCCCCCCCCCchhHHHHHHHHHhc--------CCC-cccccceecCCceEECCCceEEEecceecCCCCCCC
Q 021828 118 DWNFNSWGGVDDGCYRDWSLDLQVARKILSTE--------RLP-RFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPH 188 (307)
Q Consensus 118 df~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~--------g~~-~~~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~ 188 (307)
-.++.. +...........+.+.. +++ ....+-.+|||.+...|.+++++--. .
T Consensus 78 i~~m~~---------~~R~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEGGDv~~~~~~~~v~G~g----~----- 139 (281)
T PF02274_consen 78 IGRMRA---------PSRRGEEDVYKEIFEKHPFNIPRVLDIEEENGDPGYLEGGDVLVLGDNVLVIGVG----S----- 139 (281)
T ss_dssp E-B-SS---------GGGHGHHHHHHHHHHHSCCCTCCEEEEEEC--TTS-B-GGGEEEESTEEEEEEES----S-----
T ss_pred EeCCCh---------HHhcCcchHHHHHHHhhccccceeeCCccccccCceecCcEEEEECCEEEEEeec----C-----
Confidence 444431 22233444555555551 111 12347899999999999988884422 1
Q ss_pred CCHHHHHHHHHHHhCCc----eE----EEcCCCccCcc------------cCCC---Cc-----c---cccC--------
Q 021828 189 LTKGQIENELKAYLGVM----KI----IWLPRGLFGMI------------HDGE---AK-----P---RLAG-------- 229 (307)
Q Consensus 189 lsk~eie~~L~~~LGv~----kv----IwL~~G~~gl~------------~~p~---~~-----~---~~~g-------- 229 (307)
-|..+--+.|++.|+.. ++ +..+.+...+. -.|. .. . ...|
T Consensus 140 RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~iI~v~~ 219 (281)
T PF02274_consen 140 RTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDAFDPEEEEELEQALKERGFEIIEVPE 219 (281)
T ss_dssp SS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCHHCTHHHHHHHHHHSSSTCEEEEESS
T ss_pred CCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcccchHHHHHHHHHhcccCcEEEEecc
Confidence 25677788889999877 33 23333332210 0011 00 0 0011
Q ss_pred ccccccceeEEEEC-CeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021828 230 TRLAASYVNFYIAN-GGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 296 (307)
Q Consensus 230 ~~l~asY~Nfli~N-~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 296 (307)
+...+.=+|+|.++ +.|+++. ......+.|++. +.+|+.++ .+++.++|||+||+|+.+
T Consensus 220 ~e~~~~~~N~l~l~~~~vi~~~-----~~~~~~~~L~~~--G~~v~~v~-~~el~k~gGg~~C~t~~L 279 (281)
T PF02274_consen 220 EEQWNFACNVLSLGPGKVIAYA-----SNPRTNEQLEKA--GIEVIEVD-FSELEKGGGGLRCMTLPL 279 (281)
T ss_dssp CSCSGGGGS-EEECTTEEEEET-----THHHHHHHHHHT--T-EEEEE--HHHHHTTT--TTTTEEEE
T ss_pred chhhhccCCEEEecCCEEEECC-----CCHHHHHHHHhc--CCeEEEEc-HHHhhcCCCchhhhceEC
Confidence 11234559999999 6666654 223344566665 99999999 999999999999999853
No 7
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=98.37 E-value=8.5e-06 Score=76.12 Aligned_cols=141 Identities=22% Similarity=0.322 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCCCccc--ccceecC-CceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhC-CceEEE--cC
Q 021828 138 DLQVARKILSTERLPRFP--HSMVLEG-GSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLG-VMKIIW--LP 211 (307)
Q Consensus 138 D~~v~~~l~~~~g~~~~~--~~lvlEG-G~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LG-v~kvIw--L~ 211 (307)
....-....+.+|++.+. .+-+.|| |.+..+|..|+++-.+ .| |..+-.++|+++|+ -..|+- +|
T Consensus 93 E~~~~~~~~~~lgi~i~~~~~~~~~eG~GD~l~~~~~~v~iG~s-----~R----Tn~egi~~l~~~L~~~~~v~~~~~~ 163 (267)
T COG1834 93 EEEAIKETLESLGIPIYPRVEAGVFEGAGDVLMDGGDTVYIGYS-----FR----TNLEGIEQLQAWLEEGYEVSLVRLD 163 (267)
T ss_pred CHHHHHHHHHHcCCcccccccCCCccccccEEEeCCcEEEEEec-----cc----cchHHHHHHHHHhccCcEEEEEecC
Confidence 344555667788998443 4688999 9999997668887654 12 45666777777887 444443 44
Q ss_pred CCccCc------c------cCCCCc---------cc-c-----cCccccccceeEEEECCeEEeccCCCchhHHHHHHHH
Q 021828 212 RGLFGM------I------HDGEAK---------PR-L-----AGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVL 264 (307)
Q Consensus 212 ~G~~gl------~------~~p~~~---------~~-~-----~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l 264 (307)
.+...+ + ..|+.. .+ . ......+-++|++-.+..+++..++.+ . .++|
T Consensus 164 ~~~lHLdt~~~~l~e~~al~y~~~~~~~~~~~lk~r~~~~I~Vpe~e~~~l~~n~v~~g~~~v~~~~~~~-~----~e~L 238 (267)
T COG1834 164 ERYLHLDTVFNPLAEGLALAYPPAFSEGANDVLKERGFELIEVPEEEAFALGCNVVSLGPNVVIALPRTP-K----AEQL 238 (267)
T ss_pred CceeehhheeeeccCcceeecchhcchhHHHHHhhCCceEEecCHhHhhhhccceeecCCceeecCcccc-h----HHHH
Confidence 432221 0 011100 00 0 112234689999999999999998877 4 5778
Q ss_pred HHhCCCCEEEecCchhHHhhCCCceeeecCc
Q 021828 265 SQAFPKYEVVGIERAREIVLGGGNIHCITQQ 295 (307)
Q Consensus 265 ~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q 295 (307)
+++ +.+|+.++ .++|...|||+||+|+-
T Consensus 239 ~~~--GfeVi~~~-~~ei~k~gGg~~C~tl~ 266 (267)
T COG1834 239 AAA--GFEVIEVD-LTEILKGGGGLRCMTLP 266 (267)
T ss_pred HhC--CceEEecC-HHHHHHcCCCceeeccc
Confidence 877 89999999 99999999999999974
No 8
>PRK01388 arginine deiminase; Provisional
Probab=96.58 E-value=0.016 Score=57.75 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCceEEEcCCCccCcccCCCCcccccCc-cccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCCCC
Q 021828 193 QIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGT-RLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKY 271 (307)
Q Consensus 193 eie~~L~~~LGv~kvIwL~~G~~gl~~~p~~~~~~~g~-~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP~r 271 (307)
.+++.|+++||++++=.++-| -+-+ ... .....=+|+|-....+||-- . ....-.+.|+++ +.
T Consensus 314 ~l~~~L~~~lg~~~~~lI~~g-gd~~---------~~~~Eq~~~g~N~l~i~pg~Vv~~-~---~n~~t~~~L~~~--G~ 377 (406)
T PRK01388 314 PFLEVLAEALGLDKLRVIETG-GDDI---------AAEREQWNDGNNTLAIAPGVVVAY-D---RNTVTNALLRKA--GI 377 (406)
T ss_pred CHHHHHHHHhCCCCceEEecC-CCcc---------cchHHHHhcCCCEEEecCCEEEEe-C---CcHHHHHHHHHC--CC
Confidence 488999999999876666644 1100 001 11123378888865555432 1 222345778887 99
Q ss_pred EEEecCchhHHhhCCCceeeecCcc
Q 021828 272 EVVGIERAREIVLGGGNIHCITQQQ 296 (307)
Q Consensus 272 ~Vv~I~~~~~l~~~GG~iHCiT~q~ 296 (307)
+|+.|+ .++|..+|||+||+|+..
T Consensus 378 ~v~~i~-~~el~~~~Gg~~C~t~pl 401 (406)
T PRK01388 378 EVITIP-GSELGRGRGGPRCMSCPI 401 (406)
T ss_pred EEEEeC-hHHhhcCCCCCeecccee
Confidence 999999 999999999999999864
No 9
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=96.01 E-value=0.0096 Score=59.18 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=40.5
Q ss_pred eeEEEEC-CeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021828 237 VNFYIAN-GGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 296 (307)
Q Consensus 237 ~Nfli~N-~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 296 (307)
.|+|... |.||+.- .-..-.+.|+++ +.+|+.|+ ..+|..+|||.||+|+..
T Consensus 348 ~NvLai~pg~Vi~y~-----rn~~tn~~L~~~--Gi~V~~i~-~sEl~rg~GG~rCmT~PL 400 (405)
T TIGR01078 348 NNVLAIAPGVVVGYS-----RNVYTNALLEKA--GIKVLTIP-GSELSRGRGGPRCMSMPL 400 (405)
T ss_pred CcEEEeCCCEEEEec-----CCHHHHHHHHHC--CCEEEEeC-hHHHhcCCCCCeecceEE
Confidence 7888844 5555543 223455788887 99999999 999999999999999864
No 10
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism]
Probab=92.35 E-value=0.18 Score=50.08 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCceEEEcCCCccCcccCCCCcccccCcc-ccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCC
Q 021828 191 KGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTR-LAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFP 269 (307)
Q Consensus 191 k~eie~~L~~~LGv~kvIwL~~G~~gl~~~p~~~~~~~g~~-l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP 269 (307)
+...-+.+.+.||++++=.++-|--.++ ...| ....=.|+|-+-..+||+. +.. -..-+.++++
T Consensus 314 ~~~~~~~~~~~lgi~~~~~I~~gg~d~i---------~~~reqw~dg~N~L~i~PG~Vv~y-drN---~~tN~~l~e~-- 378 (409)
T COG2235 314 LGDLLEYLAEALGIDKVRLIETGGGDVI---------AAEREQWDDGTNTLTIAPGVVVAY-DRN---IYTNNLLREA-- 378 (409)
T ss_pred chhHHHHHHHHhCCCcceEEEeCCCccc---------hhhHHHhhcCCceEEecCCEEEee-cCC---ccchhhHHHc--
Confidence 4456667777788777655553311111 1112 2235578999999888874 322 1222567776
Q ss_pred CCEEEecCchhHHhhCCCceeeecCcc
Q 021828 270 KYEVVGIERAREIVLGGGNIHCITQQQ 296 (307)
Q Consensus 270 ~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 296 (307)
+.+|+.|+ ..+|-.|-||.||+|+..
T Consensus 379 Gi~Vi~I~-~sEL~rGrGG~~CMt~pl 404 (409)
T COG2235 379 GIKVITIP-GSELGRGRGGPRCMTCPL 404 (409)
T ss_pred CcEEEEEe-cccccCCCCCCceeeeee
Confidence 99999999 999999999999999865
No 11
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=62.07 E-value=3.2 Score=18.51 Aligned_cols=6 Identities=83% Similarity=1.857 Sum_probs=4.7
Q ss_pred eeccCC
Q 021828 120 NFNSWG 125 (307)
Q Consensus 120 ~FN~WG 125 (307)
.||.||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 588887
No 12
>COG3724 AstB Succinylarginine dihydrolase [Amino acid transport and metabolism]
Probab=51.92 E-value=68 Score=31.49 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=96.1
Q ss_pred CCCchhHHHHHHHHHhcCCCc------ccccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCce
Q 021828 133 RDWSLDLQVARKILSTERLPR------FPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMK 206 (307)
Q Consensus 133 ~~~~~D~~v~~~l~~~~g~~~------~~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~k 206 (307)
+|..+-.+..+.+++..|+.. ...+-++++|.++-|= ..+.+++||+- ..---.+++++-.+|+..++--.
T Consensus 209 yPaRQt~eAsqAvaRl~g~~~~~~vfaqQnp~vIdqGvFHNDV--iaV~nr~vLf~-He~AF~~~~~ll~elrar~~g~~ 285 (442)
T COG3724 209 YPARQTREASEAVARLHGVNPQQVVFAQQNPAVIDQGVFHNDV--IAVSNRQVLFC-HEQAFARQSQLLAELRARVNGFM 285 (442)
T ss_pred CchHHHHHHHHHHHHHhCCCccceeeeccCHHHhhccccccce--EEecccceEEe-cHHhhccHHHHHHHHHhhcCCce
Confidence 354566677777888777741 2357899999998775 57788888874 23345788999999998887655
Q ss_pred EEEcCCCccCcccCCCCcccccCccccccce-eE--EEEC-C--eEEeccCCCchhHHHHHHHHHHhC----CCCEEEec
Q 021828 207 IIWLPRGLFGMIHDGEAKPRLAGTRLAASYV-NF--YIAN-G--GIITPQFGDKKWDGEAVRVLSQAF----PKYEVVGI 276 (307)
Q Consensus 207 vIwL~~G~~gl~~~p~~~~~~~g~~l~asY~-Nf--li~N-~--~VivP~fg~~~~D~~Al~~l~~~f----P~r~Vv~I 276 (307)
.|-+|..-.- -....+||+ |. |-.+ | .+++|+=-. ....+...++++. |=.+|.-+
T Consensus 286 ~ieVp~~~vs------------v~DaVasYLFNSQLls~~dg~m~Lv~P~E~r--dn~~vw~yl~~l~a~d~PI~~vkvf 351 (442)
T COG3724 286 AIEVPAAQVS------------VSDAVASYLFNSQLLSRADGSMLLVLPQECR--DNAGVWRYLNELLAADNPISEVKVF 351 (442)
T ss_pred EEEecccccc------------HHHHHHHHhhhhhheecCCCeEEEEechHhc--cChHHHHHHHHHHccCCCcceeEEE
Confidence 5666643110 011223332 11 1111 1 256787321 2345777777764 77888889
Q ss_pred CchhHHhhCCCceeeecCccCC
Q 021828 277 ERAREIVLGGGNIHCITQQQPA 298 (307)
Q Consensus 277 ~~~~~l~~~GG~iHCiT~q~P~ 298 (307)
+ -+.-...|||--|+-.-++-
T Consensus 352 D-lrqSM~NGGGPACLRLRVvl 372 (442)
T COG3724 352 D-LRQSMANGGGPACLRLRVVL 372 (442)
T ss_pred e-HHHHhhcCCCceeEEEeeec
Confidence 9 99999999999999876653
No 13
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=47.72 E-value=20 Score=29.25 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=25.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCceEEEcCC
Q 021828 182 NKNRNPHLTKGQIENELKAYLGVMKIIWLPR 212 (307)
Q Consensus 182 n~nRNp~lsk~eie~~L~~~LGv~kvIwL~~ 212 (307)
..+|||+++|+.++..|++ .|+. .+|+|.
T Consensus 24 P~S~~~~~~k~~l~~~l~~-~gi~-Y~~~~~ 52 (122)
T PF04343_consen 24 PRSRKPGFNKEDLASFLEE-AGIE-YVWLPE 52 (122)
T ss_pred CCCCCCCCCHHHHHHHHHH-CCce-Eeechh
Confidence 3458999999999999998 7986 999985
No 14
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=46.91 E-value=19 Score=29.45 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=17.5
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEE
Q 021828 249 PQFGDKKWDGEAVRVLSQAFPKYEV 273 (307)
Q Consensus 249 P~fg~~~~D~~Al~~l~~~fP~r~V 273 (307)
-.||.. .=+.+.++|++.||+++|
T Consensus 85 ~~fG~A-dH~~t~~il~~~yp~y~i 108 (108)
T PF05005_consen 85 QGFGRA-DHSITAEILKKKYPDYEI 108 (108)
T ss_dssp TTTBB---HHHHHHHHHHHSTTSEE
T ss_pred cccCCC-CHHHHHHHHHHHCcCCCC
Confidence 356766 566788999999999886
No 15
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=46.70 E-value=47 Score=30.60 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=53.8
Q ss_pred eeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccc--ccee-cCCceEECCCceEEEec-------ceecCC
Q 021828 114 VAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPH--SMVL-EGGSIHVDGEGTCLTTE-------ECLLNK 183 (307)
Q Consensus 114 ~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~--~lvl-EGG~i~~dG~GtlltTe-------~~lln~ 183 (307)
+.++.|+|. +.+...-+.++++|+.+|++..-. ++.. -||+=.+|+..-+...+ ..++ |
T Consensus 29 v~alsfdYG----------Qrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saLtd~~~~vp~~~~~~~~~p~t~V-P 97 (222)
T COG0603 29 VHALTFDYG----------QRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSALTDDSIDVPKYEFAEEEIPATFV-P 97 (222)
T ss_pred EEEEEeeCC----------CCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcCcCCCccccccccccccCcceEe-c
Confidence 667888875 233667789999999999986543 3333 33555566543332222 1233 7
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEEcC
Q 021828 184 NRNPHLTKGQIENELKAYLGVMKIIWLP 211 (307)
Q Consensus 184 nRNp~lsk~eie~~L~~~LGv~kvIwL~ 211 (307)
+||-- =--+-..+.+.+|++.|++--
T Consensus 98 ~RN~i--flsiA~~~Ae~~g~~~I~~Gv 123 (222)
T COG0603 98 ARNLI--FLSIAAAYAEALGADAIIIGV 123 (222)
T ss_pred cccHH--HHHHHHHHHHHcCCCeEEEEe
Confidence 88832 134677788899999998843
No 16
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=41.40 E-value=1.1e+02 Score=27.75 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHhcCCCccccc---ceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc
Q 021828 136 SLDLQVARKILSTERLPRFPHS---MVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM 205 (307)
Q Consensus 136 ~~D~~v~~~l~~~~g~~~~~~~---lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~ 205 (307)
+.+++..+.+.+.+|++.++.. +.+-|=.-. ++..-+|+ +|.-|.+|++ +|++.|+++
T Consensus 115 ~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v-------~tn~G~Lv----hP~~s~eEl~-~l~~~l~v~ 175 (199)
T PF01912_consen 115 ELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAV-------ATNKGGLV----HPDASEEELE-ELEELLGVP 175 (199)
T ss_dssp CGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEE-------E-SSEEEE-----TT--HHHHH-HHHHHHTSS
T ss_pred CCCHHHHHHHHHhcCceEEEEEecCcccceeeEE-------EeCcEEEE----CCCCCHHHHH-HHHHHhCCc
Confidence 4566777788888999888654 333343333 33334555 6777877775 689999988
No 17
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=34.98 E-value=2e+02 Score=26.28 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCccc---ccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc
Q 021828 142 ARKILSTERLPRFP---HSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM 205 (307)
Q Consensus 142 ~~~l~~~~g~~~~~---~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~ 205 (307)
-+.+.+.++.+... ..+..=|+++..+-+| ||+ +|.+|++++ +.|++.||++
T Consensus 117 ~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G-------~lv----hP~~s~ee~-~~i~d~LgV~ 171 (215)
T TIGR00323 117 EELISDVLGVEVFRGTIAGLITVGSYAVVTNRG-------GLV----HPQTSVQEQ-EELSSLLGVE 171 (215)
T ss_pred HHHHHHhcCCcEEEEecccccccceEEEEeCcE-------EEE----CCCCCHHHH-HHHHHHhCCc
Confidence 34566777777654 3456666666655555 444 678887665 5789999997
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=30.37 E-value=69 Score=27.38 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEeccCCCchhHHHHHHHHH-HhCCCCEEEecC
Q 021828 245 GIITPQFGDKKWDGEAVRVLS-QAFPKYEVVGIE 277 (307)
Q Consensus 245 ~VivP~fg~~~~D~~Al~~l~-~~fP~r~Vv~I~ 277 (307)
.||+|+|+....=.++++-+. +.+|+.+||-|+
T Consensus 4 sviip~~n~~~~l~~~L~sl~~q~~~~~eiivVd 37 (196)
T cd02520 4 SILKPLCGVDPNLYENLESFFQQDYPKYEILFCV 37 (196)
T ss_pred EEEEecCCCCccHHHHHHHHHhccCCCeEEEEEe
Confidence 478899986633334554443 347888888765
No 19
>smart00654 eIF6 translation initiation factor 6.
Probab=30.29 E-value=4.1e+02 Score=23.92 Aligned_cols=60 Identities=23% Similarity=0.358 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCCCcccccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc
Q 021828 137 LDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM 205 (307)
Q Consensus 137 ~D~~v~~~l~~~~g~~~~~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~ 205 (307)
.+++.-+.+.+.+|++..+..+ +|.- .=|.|.+.+..-||+ +|.-|..|++ +|++.||++
T Consensus 117 ~s~ee~~~i~d~L~V~v~~gTi---~G~~-~VGs~~VannkG~lv----~~~tt~~El~-~ie~~l~v~ 176 (200)
T smart00654 117 LSKETEEIISDVLGVEVFRGTI---AGNI-TVGSYCVVTNKGGLV----HPDTSEEELK-ELSELLGVP 176 (200)
T ss_pred CCHHHHHHHHHHhCCeEEEEEe---cCcc-cceEEEEEECCEEEE----CCCCCHHHHH-HHHHHhCCC
Confidence 3444556777788998876543 4444 335567777777887 5667777764 578889876
No 20
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=29.57 E-value=90 Score=29.58 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=31.9
Q ss_pred EEEECCeEEeccCCCchhHHHHHHHHHHhCC-CCEEEecC
Q 021828 239 FYIANGGIITPQFGDKKWDGEAVRVLSQAFP-KYEVVGIE 277 (307)
Q Consensus 239 fli~N~~VivP~fg~~~~D~~Al~~l~~~fP-~r~Vv~I~ 277 (307)
++++.+..++=.++.. +|.++.++|+++++ +++|+.+.
T Consensus 123 ~l~~~~~~v~iG~s~R-Tn~egi~~l~~~L~~~~~v~~~~ 161 (267)
T COG1834 123 VLMDGGDTVYIGYSFR-TNLEGIEQLQAWLEEGYEVSLVR 161 (267)
T ss_pred EEEeCCcEEEEEeccc-cchHHHHHHHHHhccCcEEEEEe
Confidence 4566566667778888 99999999999999 99999888
No 21
>PF04996 AstB: Succinylarginine dihydrolase; InterPro: IPR007079 Succinylarginine dihydrolase (AstB) transforms N(2)-succinylglutamate into succinate and glutamate. This enzyme is the second in the five-step ammonia-producing arginine succinyltransferase pathway, the major pathway in Escherichia coli and in other related bacteria for arginine catabolism as a sole nitrogen source. AstB assumes a five-stranded alpha/beta propeller structure, placing it in the amidinotransferase (AT) superfamily of proteins, which are characterised by their Cys-His-Glu active site triad [].; GO: 0009015 N-succinylarginine dihydrolase activity, 0006525 arginine metabolic process; PDB: 1YNH_B 1YNF_B 1YNI_C.
Probab=28.77 E-value=1.7e+02 Score=29.43 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=81.0
Q ss_pred CCCchhHHHHHHHHHhcCCCc-----ccccceecCCceEECC-----CceEEEecceecCCCCCCCCCHHHHHHHHHHHh
Q 021828 133 RDWSLDLQVARKILSTERLPR-----FPHSMVLEGGSIHVDG-----EGTCLTTEECLLNKNRNPHLTKGQIENELKAYL 202 (307)
Q Consensus 133 ~~~~~D~~v~~~l~~~~g~~~-----~~~~lvlEGG~i~~dG-----~GtlltTe~~lln~nRNp~lsk~eie~~L~~~L 202 (307)
+|..+-.+..+.||+..|++- ..++-+++.|.++-|= +.+++.-|+.++ .++++.++|++.+
T Consensus 208 fPARQt~eAS~AVARlH~L~~~~vf~qQnp~aId~GvFHNDVIaV~N~~vLf~He~AF~--------d~~~~l~~lr~k~ 279 (439)
T PF04996_consen 208 FPARQTLEASQAVARLHGLPERTVFAQQNPAAIDAGVFHNDVIAVGNENVLFYHEQAFL--------DQAAVLAELRAKF 279 (439)
T ss_dssp S--S-BHHHHHHHHHHTTBGGGEEEEEB-HHHHTTT--SGGGTEEEETTEEEEETTSBT--------THHHHHHHHHHHS
T ss_pred CCchhHHHHHHHHHHHhCCCcceEEeccCHHHHhcCCcccceEEeeccceeeehHhhhC--------CHHHHHHHHHHHc
Confidence 466777788889999888832 1357889999987552 225555555554 5899999999999
Q ss_pred CCceEEEcCCCccCcccCCCCcccccCccccccce-eEEEE-----CCeEEeccCCCchhHHHHHHHHHHh----CCCCE
Q 021828 203 GVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYV-NFYIA-----NGGIITPQFGDKKWDGEAVRVLSQA----FPKYE 272 (307)
Q Consensus 203 Gv~kvIwL~~G~~gl~~~p~~~~~~~g~~l~asY~-Nfli~-----N~~VivP~fg~~~~D~~Al~~l~~~----fP~r~ 272 (307)
+-=.+|=+|..-..|. ..-.||+ |.=++ .-.+|+|.=- .+...+.+.|+++ -|=++
T Consensus 280 ~~~~~ieVp~~~vsl~------------dAV~sYLFNSQLlt~pdg~M~Lv~P~Ec--~~~~~v~~yl~~l~~~~~PI~~ 345 (439)
T PF04996_consen 280 PGLHFIEVPEAEVSLE------------DAVKSYLFNSQLLTLPDGSMALVVPEEC--RENPAVWAYLEELVASNGPIDE 345 (439)
T ss_dssp TT-EEEEE-TTTS-HH------------HHHHHTTTSSEEEE-TTS-EEEEEEHHH--HSSHHHHHHHHHHHHSSSSEEE
T ss_pred CCCEEEEeccccCcHH------------HHHHHccccceeeecCCCcEEEEechHH--hcCHHHHHHHHHHHhcCCCcce
Confidence 8755666664311100 0001111 00000 1237888732 1455666666665 47789
Q ss_pred EEecCchhHHhhCCCceeeecCccC
Q 021828 273 VVGIERAREIVLGGGNIHCITQQQP 297 (307)
Q Consensus 273 Vv~I~~~~~l~~~GG~iHCiT~q~P 297 (307)
|..+| .+.--..|||--|+-.-++
T Consensus 346 v~~~D-lrqSM~NGGGPACLRLRVv 369 (439)
T PF04996_consen 346 VHVFD-LRQSMRNGGGPACLRLRVV 369 (439)
T ss_dssp EEEE---HHHHTTT--TTTTEEEEE
T ss_pred eEEec-hhhhhhcCCCcchheeeee
Confidence 99999 9999999999999865444
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=27.89 E-value=62 Score=25.62 Aligned_cols=35 Identities=11% Similarity=0.463 Sum_probs=25.9
Q ss_pred eEEeccCCCchhHHHHHHHHHHh-CCCCEEEecCch
Q 021828 245 GIITPQFGDKKWDGEAVRVLSQA-FPKYEVVGIERA 279 (307)
Q Consensus 245 ~VivP~fg~~~~D~~Al~~l~~~-fP~r~Vv~I~~~ 279 (307)
.|++|+|+.++.=.++++.+++. .+..+|+-|++.
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~ 36 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDG 36 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccc
Confidence 38999999864556788877777 678888888733
No 23
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=27.26 E-value=74 Score=26.26 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=20.9
Q ss_pred cCCCCCCCC-------CHHHHHHHHHHHhCCceE
Q 021828 181 LNKNRNPHL-------TKGQIENELKAYLGVMKI 207 (307)
Q Consensus 181 ln~nRNp~l-------sk~eie~~L~~~LGv~kv 207 (307)
+|+||+|++ |.+|||..|++++.-+.|
T Consensus 30 v~~~r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDI 63 (121)
T KOG3432|consen 30 VNENREPNFLVVDSKTTVEEIEDAFKSFTARDDI 63 (121)
T ss_pred cccCCCCCEEEEeccCCHHHHHHHHHhhccccCe
Confidence 356677754 899999999999975554
No 24
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=26.91 E-value=1.5e+02 Score=28.46 Aligned_cols=43 Identities=35% Similarity=0.567 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhcCCCcccccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEE
Q 021828 137 LDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIW 209 (307)
Q Consensus 137 ~D~~v~~~l~~~~g~~~~~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIw 209 (307)
.|-.+-..+.+..++ ||||=||| +.+.+||.+-++ ||+.||=.
T Consensus 191 L~~~~L~~i~~~~~~-----PlVlHGgS-----------------------Gip~~eI~~aI~--~GV~KvNi 233 (286)
T COG0191 191 LDFDRLKEIQEAVSL-----PLVLHGGS-----------------------GIPDEEIREAIK--LGVAKVNI 233 (286)
T ss_pred CCHHHHHHHHHHhCC-----CEEEeCCC-----------------------CCCHHHHHHHHH--hCceEEee
Confidence 565566666665554 59999999 789999999997 89998854
No 25
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=26.65 E-value=77 Score=30.69 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=18.7
Q ss_pred eEEeccCCCchhHHHHHHHH-HHhCCCCEEEecC
Q 021828 245 GIITPQFGDKKWDGEAVRVL-SQAFPKYEVVGIE 277 (307)
Q Consensus 245 ~VivP~fg~~~~D~~Al~~l-~~~fP~r~Vv~I~ 277 (307)
.||+|.||.++.=.++++-+ ++-||+.||+-++
T Consensus 44 SViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvd 77 (373)
T TIGR03472 44 SVLKPLHGDEPELYENLASFCRQDYPGFQMLFGV 77 (373)
T ss_pred EEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEe
Confidence 47777777653333444433 4446777776553
No 26
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.03 E-value=74 Score=30.88 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecC
Q 021828 257 DGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ 294 (307)
Q Consensus 257 D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~ 294 (307)
=.+|++.+++.||+--|+. |.|.-=...+| ||=-.
T Consensus 96 v~~air~iK~~~p~l~vi~-DVclc~YT~hG--HcGil 130 (320)
T cd04823 96 VCRAIRAIKEAFPELGIIT-DVALDPYTSHG--HDGIV 130 (320)
T ss_pred HHHHHHHHHHhCCCcEEEE-eeeccCCCCCC--cceec
Confidence 3679999999999987665 43666666777 88543
No 27
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a heparin-binding domain found at the N-terminal of the extracellular domain, which is itself found at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The core of the heparin-binding domain has an unusual disulphide-rich fold, consisting of a beta-x-alpha-beta-loop-beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 1MWP_A 2FKL_A 1OWT_A.
Probab=25.82 E-value=75 Score=25.78 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhCCCCEEEecC
Q 021828 256 WDGEAVRVLSQAFPKYEVVGIE 277 (307)
Q Consensus 256 ~D~~Al~~l~~~fP~r~Vv~I~ 277 (307)
..++.|+.-|+.||++.|..|-
T Consensus 36 ~k~eIL~YCrkvYP~l~ItnVv 57 (102)
T PF02177_consen 36 DKEEILKYCRKVYPELQITNVV 57 (102)
T ss_dssp SHHHHHHHHHHHSTTS-EEEEE
T ss_pred ChHHHHHHHHHhCCCCceeEEE
Confidence 4568999999999999998873
No 28
>TIGR03241 arg_catab_astB succinylarginine dihydrolase. Members of this family are succinylarginine dihydrolase (EC 3.5.3.23), the second of five enzymes in the arginine succinyltransferase (AST) pathway.
Probab=25.75 E-value=7.1e+02 Score=25.22 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=90.7
Q ss_pred CCCCchhHHHHHHHHHhcCCCcc------cccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCC-
Q 021828 132 YRDWSLDLQVARKILSTERLPRF------PHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGV- 204 (307)
Q Consensus 132 ~~~~~~D~~v~~~l~~~~g~~~~------~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv- 204 (307)
++|..+--+..+.||+..|+.-. ..+-+++.|.++-|= ..+.++.+|+- ..---+.++++.++|++.++.
T Consensus 207 rfPARQt~eAS~AVARlH~L~~~~~vf~qQnp~~Id~GvFHNDV--IaV~N~~vLf~-He~AF~d~~~~~~~ir~k~~~~ 283 (443)
T TIGR03241 207 RYPARQTLEASQAVARLHGLNPAQVVFAQQNPDVIDQGVFHNDV--IAVSNRNVLFH-HQQAFLNQSQVLDELRAKLAGL 283 (443)
T ss_pred CCCchhHHHHHHHHHHHhCCCccceEEeccCHHHHhcCCcccce--EEecCcceeeE-hHhhhcCHHHHHHHHHHHhhcc
Confidence 45667777888899998776532 367899999988663 23333333331 112234688899999988853
Q ss_pred -ce--EEEcCCCccCcccCCCCcccccCccccccce-eEEEE-----CCeEEeccCCCchhHHHHHHHHHHh----CCCC
Q 021828 205 -MK--IIWLPRGLFGMIHDGEAKPRLAGTRLAASYV-NFYIA-----NGGIITPQFGDKKWDGEAVRVLSQA----FPKY 271 (307)
Q Consensus 205 -~k--vIwL~~G~~gl~~~p~~~~~~~g~~l~asY~-Nfli~-----N~~VivP~fg~~~~D~~Al~~l~~~----fP~r 271 (307)
.. +|=+|..-..| .....||+ |.=++ .-.+|+|.=- . ....+...++++ -|=+
T Consensus 284 ~~~~~~ieVp~~~vsv------------~DAV~sYLFNSQLlt~pdg~M~Lv~P~Ec-r-~n~~v~~yl~~l~~~~~PI~ 349 (443)
T TIGR03241 284 GQQFVAIEVPDAEVSV------------ADAVSSYLFNSQLLSREDGKMMLVVPEEC-R-ENAAVWAYLNELVAGGGPID 349 (443)
T ss_pred CCCeEEEEeccccCcH------------HHHHHHhhhcceeeecCCCcEEEEechHh-h-cCHHHHHHHHHHHhcCCCcc
Confidence 22 34444321100 01112221 11110 1247788732 2 345556666663 5778
Q ss_pred EEEecCchhHHhhCCCceeeecCccCCCC
Q 021828 272 EVVGIERAREIVLGGGNIHCITQQQPAIP 300 (307)
Q Consensus 272 ~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~ 300 (307)
+|..+| .+.--..|||--|+-.-++-..
T Consensus 350 ~v~~fD-lrqSM~NGGGPACLRLRVvl~~ 377 (443)
T TIGR03241 350 EVRVFD-LRESMRNGGGPACLRLRVVLND 377 (443)
T ss_pred eEEEec-chhhhhcCCCceeeeeeeeCCH
Confidence 999999 9999999999999987766443
No 29
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=24.82 E-value=74 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCceEEEcCCC
Q 021828 191 KGQIENELKAYLGVMKIIWLPRG 213 (307)
Q Consensus 191 k~eie~~L~~~LGv~kvIwL~~G 213 (307)
-+|=-+.=.+.||+.-+|..|.+
T Consensus 85 HaQGvA~aa~~lGi~a~IvMP~~ 107 (347)
T COG1171 85 HAQGVAYAAKRLGIKATIVMPET 107 (347)
T ss_pred HHHHHHHHHHHhCCCEEEEecCC
Confidence 46666777788899888888865
No 30
>PRK13373 putative dioxygenase; Provisional
Probab=24.51 E-value=3.3e+02 Score=26.79 Aligned_cols=104 Identities=13% Similarity=0.229 Sum_probs=58.3
Q ss_pred CcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCcc-EEEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccCce
Q 021828 19 EPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEP-VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPT 97 (307)
Q Consensus 19 e~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~-V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi 97 (307)
.+|+=.++.||.... ++...++.+.+.++.+.|.++.| |.|++.++... ....|.+|.
T Consensus 10 ~SHsPl~~g~~d~p~--~~~~~~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~-------------------~Ff~d~mP~ 68 (344)
T PRK13373 10 MSHAPGALGWPDAPS--ASVRRRLLQAADRLGRSLDAARPDVIIAFLDDHFE-------------------NHFRSLMPT 68 (344)
T ss_pred CCCCCcccCCCCCCC--HHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhh-------------------hhccccCCc
Confidence 355544457774321 23456777888888888877776 44444333321 344677888
Q ss_pred EEEcCCCCCCCCCCCceeEeeeeeccCCCCCC-CCCCCCchhHHHHHHHHHh---cCCCcc
Q 021828 98 IVVNKSSASSGAQAPKVAGIDWNFNSWGGVDD-GCYRDWSLDLQVARKILST---ERLPRF 154 (307)
Q Consensus 98 ~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~-~~~~~~~~D~~v~~~l~~~---~g~~~~ 154 (307)
|.+.-... -.=.|.+||...+ ....++..+..++..|++. .|+++-
T Consensus 69 F~IG~a~~-----------~~g~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfDva 118 (344)
T PRK13373 69 VGIGVADS-----------HPGPATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYDVA 118 (344)
T ss_pred eEEEeccc-----------ccCCccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 88742211 0012557773210 0113456678899888886 366554
No 31
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=24.17 E-value=93 Score=22.86 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCEEEecCchhHH----hhCCCceeeecCc
Q 021828 258 GEAVRVLSQAFPKYEVVGIERAREI----VLGGGNIHCITQQ 295 (307)
Q Consensus 258 ~~Al~~l~~~fP~r~Vv~I~~~~~l----~~~GG~iHCiT~q 295 (307)
+.|+..+++-||+.++|-..+...- ..-+|..+|.+-|
T Consensus 6 ~~~~~r~~e~Fp~~slvef~g~~~PvtI~CP~HG~~~~s~~~ 47 (60)
T PF05265_consen 6 ESAASRFEEKFPHYSLVEFSGVATPVTIRCPKHGNFTCSTFN 47 (60)
T ss_pred HHHHHHHHHHCCCceEEEEeCCCCceEEECCCCCcEEeccHH
Confidence 4678888999999998766544332 2458999998854
No 32
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=23.53 E-value=1.2e+02 Score=29.16 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=50.6
Q ss_pred ccCccccccceeEEEECCeEEeccCCC--c---hhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCc
Q 021828 227 LAGTRLAASYVNFYIANGGIITPQFGD--K---KWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQ 295 (307)
Q Consensus 227 ~~g~~l~asY~Nfli~N~~VivP~fg~--~---~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q 295 (307)
+-|.+.-|.|+.-|-.++.|++|--+- + .-+.+.+..+++.+|+..|+..++|+.=+..--.+=|.|-+
T Consensus 58 F~gv~fMae~a~~l~p~k~vilp~~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~aeVka~aD~v~TSsn 131 (310)
T TIGR00550 58 FCGVHFMGETAKILNPEKTVLMPDLGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTTAEVKALADIVCTSSN 131 (310)
T ss_pred EeCCchHHHHHHHhCCCCEEEccCCCCCCccccccCHHHHHHHHHHCCCCEEEEECCCCHHHHHhCCEEEchHH
Confidence 446777899999989999999986532 1 14567799999999999988776676655554456666644
No 33
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.45 E-value=3.6e+02 Score=25.49 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHcCcc-EEEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEe
Q 021828 39 ALHAQRVFAKVATAISKFEP-VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGI 117 (307)
Q Consensus 39 l~~~~~~~~~la~~ia~~e~-V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~v 117 (307)
..++.+.|.++.+.|.++.| |.|++.+... -...+|.+|-|.+....+ .
T Consensus 30 ~~~v~~a~~~~~~~v~~~~PDvvVvis~dH~-------------------~~ff~d~~p~f~i~~~~~--------~--- 79 (278)
T PRK13364 30 WKPFFDGFPPVREWLEKVKPDVAVVFYNDHG-------------------LNFFLDKMPTFAVGAAPE--------Y--- 79 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEECCchH-------------------hhhccccCCeEEEeeCce--------e---
Confidence 35678889999999988876 3444443321 134567788887754322 1
Q ss_pred eeeeccCCCCCCCCCCCCchhHHHHHHHHHh---cCCCcccc-cceecCCceE----ECCCc-eEEEecceecCCCCCCC
Q 021828 118 DWNFNSWGGVDDGCYRDWSLDLQVARKILST---ERLPRFPH-SMVLEGGSIH----VDGEG-TCLTTEECLLNKNRNPH 188 (307)
Q Consensus 118 df~FN~WG~k~~~~~~~~~~D~~v~~~l~~~---~g~~~~~~-~lvlEGG~i~----~dG~G-tlltTe~~lln~nRNp~ 188 (307)
.-.+.+||.... .+...|..++..|++. .|++...+ ...++=|... ..+++ .-+-.=.+.+|....|.
T Consensus 80 ~g~~~~~g~~~~---~~~~~~~~lA~~i~~~l~~~gid~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~ 156 (278)
T PRK13364 80 SNADEGWGIPTL---APFKGDTELSWHIIESLVEEEFDITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPL 156 (278)
T ss_pred cCChhhcCCCCC---CCCCCCHHHHHHHHHHHHHcCCCeecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCC
Confidence 223345664311 3556788888888765 46665332 3444444421 11111 10001124456666677
Q ss_pred CCHHH---HHHHHHHHhC----CceEEEcCCC-ccCcccCCCCcccccCccccccceeEEEECCeEEeccCCCchhHHHH
Q 021828 189 LTKGQ---IENELKAYLG----VMKIIWLPRG-LFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 260 (307)
Q Consensus 189 lsk~e---ie~~L~~~LG----v~kvIwL~~G-~~gl~~~p~~~~~~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~A 260 (307)
.|-++ +-+.|++... -+||..+-.| +.. . .. ..|..|+ +++-|++-
T Consensus 157 ~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH--~-------l~--~~p~G~~---------------~~~fD~~~ 210 (278)
T PRK13364 157 PSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSH--Q-------LD--GERAGFI---------------NKDFDLQC 210 (278)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCcccc--C-------CC--CCCcccC---------------CHHHHHHH
Confidence 77654 5555666532 2567766544 221 0 00 2334552 24578999
Q ss_pred HHHHHHhCCCCEEEecCchhHHhhCCC
Q 021828 261 VRVLSQAFPKYEVVGIERAREIVLGGG 287 (307)
Q Consensus 261 l~~l~~~fP~r~Vv~I~~~~~l~~~GG 287 (307)
++.|++ =+ ..+..++ -.+++..+|
T Consensus 211 l~~l~~-d~-~~l~~~~-~~e~~~~AG 234 (278)
T PRK13364 211 MDSLVS-DP-EWLTQYS-NHELVELAG 234 (278)
T ss_pred HHHHHh-CH-HHHHcCC-HHHHHHHcc
Confidence 999986 22 3366666 677777766
No 34
>PF03068 PAD: Protein-arginine deiminase (PAD); InterPro: IPR013530 In the presence of calcium ions, Protein-arginine deiminase (PAD) enzymes 3.5.3.15 from EC catalyse the post-translational modification reaction responsible for the formation of citrulline residues from protein-bound arginine residues []. Four PAD isotypes of PAD have been identified in mammals, a fifth may also exist. Non-mammalian vertebrates appear to have only a single PAD enzyme. All known natural substrates of PAD are proteins known to have an important structural function, such as keratin (PAD1), intermediate filaments or proteins associated with intermediate filaments. Citrulination may have consequences for the structural integrity and interactions of these proteins. Physiological levels of calcium appear to be too low to activate these enzymes suggesting a role between PAD activation and loss of calcium homeostasis during terminal differentiation and cell death (apoptosis). ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=22.76 E-value=77 Score=31.60 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=33.9
Q ss_pred cceeEEEECCeEEecc-CCC--chhH---HHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCc
Q 021828 235 SYVNFYIANGGIITPQ-FGD--KKWD---GEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQ 295 (307)
Q Consensus 235 sY~Nfli~N~~VivP~-fg~--~~~D---~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q 295 (307)
.=+|.++.++.+++|. ||. .+.| ++..+.++.+ +.+|.-|+.-..--..+|.+||-|.-
T Consensus 307 ~~vN~vvl~~~l~~P~P~GP~i~G~d~~e~~v~~~~~~~--G~~v~fiDD~~~yh~~~GevhcgtNv 371 (385)
T PF03068_consen 307 NMVNMVVLGKHLGIPKPFGPVIDGRDCLEEAVRELLEPA--GLNVTFIDDWFSYHVLGGEVHCGTNV 371 (385)
T ss_dssp -TTS-EEETTEEEEE-----EETTEEHHHHHHHHHHGGG--T-EEEEE--TTTTGGGT--TTTTEEE
T ss_pred cccceEEecCccccCCCcCCccCCEehHHHHHHHHHhhc--CCEEEEEeCcHHHHhcCCceeccccc
Confidence 3489999999999885 441 1233 4444555554 89999999444556679999999864
No 35
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=22.62 E-value=6e+02 Score=23.23 Aligned_cols=100 Identities=22% Similarity=0.297 Sum_probs=54.0
Q ss_pred HHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHH
Q 021828 68 WENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILS 147 (307)
Q Consensus 68 ~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~ 147 (307)
.+..++.|..+|.++....+.. =.|-+.+.|+.|- .+ +|...|.++ +.+.+
T Consensus 78 ~~~l~~~L~~~V~v~~~~~~~s---~iGnli~~Nd~g~----------lv---------------~~~~~~~e~-~~i~~ 128 (220)
T cd00527 78 LQHIRNSLPDEVGVLRVKENLS---ALGNVILCNDHGA----------LV---------------HPDLSKEAE-EIIED 128 (220)
T ss_pred HHHHHHhcCCCeEEEEccccce---eeeeEEEEcCceE----------Ee---------------CCCCCHHHH-HHHHH
Confidence 4455666666777776543322 2345555554432 22 233334333 35666
Q ss_pred hcCCCcccccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc
Q 021828 148 TERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM 205 (307)
Q Consensus 148 ~~g~~~~~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~ 205 (307)
.++.+....++ || +..=|.-.+.+..-||+ +|.+|++++ +.+++.||++
T Consensus 129 ~L~v~V~~~~i---~~-~~avGn~iv~Nd~g~Lv----hP~~s~ee~-~~i~d~L~V~ 177 (220)
T cd00527 129 VLGVEVFRGTI---AG-IKTVGSAGVLTNKGGLV----HPKTSDEEL-EELSELFKVP 177 (220)
T ss_pred hcCCcEEEEEc---cC-cccceeEEEEeccEEEE----CCCCCHHHH-HHHHHHhCCc
Confidence 67776654221 22 44445433333344665 678886664 5789999997
No 36
>PRK10018 putative glycosyl transferase; Provisional
Probab=22.09 E-value=92 Score=29.19 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=25.7
Q ss_pred eEEeccCCCchhHHHHHH-HHHHhCCCCEEEecCchh
Q 021828 245 GIITPQFGDKKWDGEAVR-VLSQAFPKYEVVGIERAR 280 (307)
Q Consensus 245 ~VivP~fg~~~~D~~Al~-~l~~~fP~r~Vv~I~~~~ 280 (307)
.||+|+|+.++.=.++++ ++++.+|+.+|+-|+.+.
T Consensus 8 SVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS 44 (279)
T PRK10018 8 SIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS 44 (279)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC
Confidence 489999998733345554 555668999999998443
No 37
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.01 E-value=1e+02 Score=29.94 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecC
Q 021828 257 DGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ 294 (307)
Q Consensus 257 D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~ 294 (307)
=.+|++.+++.||+--|+. |.|.-=...+| ||=-.
T Consensus 101 v~~air~iK~~~pdl~vi~-DVcLc~YT~hG--HcGil 135 (322)
T PRK13384 101 LARMVRTIKAAVPEMMVIP-DICFCEYTDHG--HCGVL 135 (322)
T ss_pred HHHHHHHHHHHCCCeEEEe-eeecccCCCCC--ceeec
Confidence 3689999999999987665 43766667788 88543
No 38
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=21.52 E-value=1.8e+02 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHHHHHHcCccEEEEeCchhHHHHHhhCC--CCeEEEEeCC-CC---ccccccCceEEEcC
Q 021828 48 KVATAISKFEPVTVCASAAQWENARSQLP--ENIRVIEMSM-NG---SWFRDTGPTIVVNK 102 (307)
Q Consensus 48 ~la~~ia~~e~V~v~v~~~~~~~a~~~l~--~~v~~~~~~~-~D---~W~RD~gPi~v~~~ 102 (307)
+.++++-++--|++.+......-+.+... ..|.+.++-. .- +.+.|+||++|..+
T Consensus 111 ~~~~a~k~~gavYl~~~GGaaaL~a~~Ik~v~~V~~~dLGmpEAv~~l~VedfGP~iV~iD 171 (204)
T PRK08228 111 GTEEGCQEFKALHCVFPAGCAVLAATQVEEIEDAQWRDLGMPETLWVCRVKEFGPLIVSID 171 (204)
T ss_pred HHHHHHHHcCEEEEEcCcHHHHHHHhhccEEEEeeeccCCCccEEEEEEEeeccceEEEEE
Confidence 46777888888888877654332323322 1333334421 33 45899999999753
No 39
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=20.50 E-value=2.2e+02 Score=26.25 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCCCcccccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceE
Q 021828 137 LDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKI 207 (307)
Q Consensus 137 ~D~~v~~~l~~~~g~~~~~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kv 207 (307)
.++..-+.++..+|++.++..+ ||.. +=|---++|++-+|+ ||.-|.+|.| +|+++||++-.
T Consensus 118 l~~~a~k~I~d~LgVev~rgtI---ag~~-tVGsa~v~tnkG~Lv----hP~~s~~Ele-~Lse~f~V~v~ 179 (222)
T COG1976 118 LSDEAEKEIEDVLGVEVVRGTI---AGIP-TVGSAGVLTNKGGLV----HPETSDEELE-ELSELFGVPVD 179 (222)
T ss_pred cCHHHHHHHHhhcceEEEEEEe---cCcc-ceeeEEEEecCccee----CCCCCHHHHH-HHHHHhCeeEE
Confidence 4445556777778888776543 3333 333334677777776 7778877765 68999999743
No 40
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=20.08 E-value=1.2e+02 Score=29.42 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecC
Q 021828 257 DGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ 294 (307)
Q Consensus 257 D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~ 294 (307)
=.+|++.+++.||+--|+. |.|..=...+| ||=-.
T Consensus 91 v~~air~iK~~~p~l~vi~-DvcLc~YT~hG--HcGil 125 (314)
T cd00384 91 VQRAIRAIKEAVPELVVIT-DVCLCEYTDHG--HCGIL 125 (314)
T ss_pred HHHHHHHHHHhCCCcEEEE-eeeccCCCCCC--cceec
Confidence 4689999999999887665 43766666788 88543
Done!