Query 021828
Match_columns 307
No_of_seqs 156 out of 810
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7c_X Agmatine deiminase; str 100.0 2E-100 5E-105 739.5 26.0 299 3-301 4-376 (383)
2 3hvm_A Agmatine deiminase; hyd 100.0 1.3E-95 5E-100 693.7 21.4 268 13-297 3-330 (330)
3 2jer_A Agmatine deiminase; hyd 100.0 1.6E-94 5.6E-99 699.7 24.0 287 2-298 5-364 (389)
4 2ewo_A Putative agmatine deimi 100.0 8.4E-94 2.9E-98 693.1 27.0 290 2-301 5-371 (377)
5 1xkn_A Putative peptidyl-argin 100.0 8.6E-93 2.9E-97 681.4 18.5 278 8-299 2-347 (355)
6 1zbr_A AAQ65385, conserved hyp 100.0 9.3E-92 3.2E-96 672.9 20.6 274 10-301 2-340 (349)
7 2ci1_A NG, NG-dimethylarginine 99.9 1.1E-22 3.7E-27 188.4 12.5 226 12-298 11-274 (275)
8 1h70_A NG, NG-dimethylarginine 99.9 2E-21 6.9E-26 178.2 16.4 201 37-296 27-255 (255)
9 1jdw_A L-arginine\:glycine ami 99.7 1.7E-17 6E-22 162.7 11.4 125 157-300 250-416 (423)
10 1bwd_A ADT, protein (inosamine 99.6 4.8E-16 1.7E-20 148.6 7.2 125 157-299 175-340 (348)
11 2a9g_A Arginine deiminase; arg 99.3 1.7E-12 5.6E-17 127.0 9.3 128 156-299 219-414 (418)
12 3i4a_A N(G),N(G)-dimethylargin 99.3 2.6E-11 8.8E-16 114.2 15.9 230 14-300 29-306 (308)
13 4e4j_A Arginine deiminase; L-a 97.6 9.9E-05 3.4E-09 72.1 7.4 52 237-296 374-426 (433)
14 1s9r_A Arginine deiminase; hyd 96.4 0.0018 6.1E-08 62.9 3.5 54 235-296 349-403 (410)
15 1s9r_A Arginine deiminase; hyd 56.8 88 0.003 29.7 11.2 51 12-63 11-74 (410)
16 1wdd_S Ribulose bisphosphate c 51.1 36 0.0012 27.5 6.3 79 187-277 19-104 (128)
17 2dew_X Protein-arginine deimin 44.2 14 0.00049 37.7 3.5 58 236-295 594-657 (671)
18 2hw4_A 14 kDa phosphohistidine 40.9 19 0.00063 29.8 3.1 25 249-274 114-138 (144)
19 2nmm_A 14 kDa phosphohistidine 40.8 17 0.00058 29.8 2.8 25 249-274 105-129 (135)
20 3i4a_A N(G),N(G)-dimethylargin 37.4 21 0.00072 32.7 3.3 39 237-277 152-190 (308)
21 2r5f_A Transcriptional regulat 33.8 27 0.00091 31.1 3.3 28 184-211 2-29 (264)
22 3nze_A Putative transcriptiona 30.5 43 0.0015 29.8 4.1 26 184-209 2-27 (267)
23 1mwp_A Amyloid A4 protein; hep 26.6 44 0.0015 25.7 2.9 21 256-276 38-58 (96)
24 3kv1_A Transcriptional repress 24.4 53 0.0018 29.2 3.5 25 187-212 6-30 (267)
25 3efb_A Probable SOR-operon reg 23.8 45 0.0015 29.6 2.9 27 186-212 8-34 (266)
26 3djh_A Macrophage migration in 21.1 52 0.0018 25.1 2.4 65 138-205 19-90 (114)
27 3bcv_A Putative glycosyltransf 20.9 70 0.0024 26.4 3.4 34 245-278 8-42 (240)
No 1
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=100.00 E-value=1.6e-100 Score=739.53 Aligned_cols=299 Identities=73% Similarity=1.247 Sum_probs=270.2
Q ss_pred CCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEEE
Q 021828 3 MNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVI 82 (307)
Q Consensus 3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~~v~~~ 82 (307)
..++|++.+||||||||||++|||+|||+.++|+..++++|++|++||++||+||||+|+|++++.+.|+++|+++|+++
T Consensus 4 ~~~~p~~~~~rmPaEweph~~~wm~WP~~~~~W~~~l~~a~~~~~~ia~aIa~~EpV~i~v~~~~~~~a~~~l~~~v~~~ 83 (383)
T 3h7c_X 4 SRESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVV 83 (383)
T ss_dssp CSSCTGGGTCBCCCTTSCEEEEEECCCCCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHSCTTSEEE
T ss_pred CCCCcccCCcccCCCcChhhcEEEEeCCCCcchhHHHHHHHHHHHHHHHHHhcCCcEEEEECHHHHHHHHHhccCCcEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccceecC
Q 021828 83 EMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEG 162 (307)
Q Consensus 83 ~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lvlEG 162 (307)
++++||+|+||+||+||++++|..++...+++++|||+||+||+|++++|++|++|++++++|++..|+++++++|||||
T Consensus 84 ~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~v~~~~g~~~~~~~lVlEG 163 (383)
T 3h7c_X 84 EMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEG 163 (383)
T ss_dssp ECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHHHHHHHTCCEEEEEEECCG
T ss_pred EcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHHHHHHhCCCcccCCeeecC
Confidence 99999999999999999987651100111238999999999999877778899999999999999999999999999999
Q ss_pred CceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC--------------------------
Q 021828 163 GSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-------------------------- 216 (307)
Q Consensus 163 G~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g-------------------------- 216 (307)
|||++||+||+||||+||||+||||+|||+|||++|+++||++||||||+|+.|
T Consensus 164 GsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~kvIWL~~Gl~gDddTdgHID~larFv~pg~Vl~~~~~ 243 (383)
T 3h7c_X 164 GSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTD 243 (383)
T ss_dssp GGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEEECC
T ss_pred CcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCcEEEEeCCCcCCCCCcCcceeeeEEecCCCEEEEEccC
Confidence 999999999999999999999999999999999999999999999999998755
Q ss_pred -----------------------------cccCCCCcc-------------------cccCccccccceeEEEECCeEEe
Q 021828 217 -----------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGGIIT 248 (307)
Q Consensus 217 -----------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~Viv 248 (307)
|+++|.|.+ |.+|+|++|||+||||+|++|||
T Consensus 244 d~~dp~y~~~~~~~~~L~~~tda~Gr~~~i~~lp~P~~~~~~~~e~~g~~~~~~~~~r~~g~rl~aSY~Nfli~Ng~Viv 323 (383)
T 3h7c_X 244 DETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIA 323 (383)
T ss_dssp CTTSHHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTEEEE
T ss_pred CCCCcCHHHHHHHHHHHHhhhhccCCceEEEEecCCCccccchhhccccccccccccccCCCcccccccceeeECCEEEE
Confidence 222333222 23588999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCCCc
Q 021828 249 PQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPT 301 (307)
Q Consensus 249 P~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~~ 301 (307)
|+||++++|++|+++||++||+|+||+|++|++|+.+||||||+|||+|+...
T Consensus 324 P~fgd~~~D~~A~~~l~~~fP~R~Vv~I~~~~~i~~ggG~iHCiTqQ~P~~~~ 376 (383)
T 3h7c_X 324 PQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT 376 (383)
T ss_dssp ECCCCTTHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCHHHHEEEEECCCC
T ss_pred ecCCCcccHHHHHHHHHHHCCCCEEEeCccHHHHHhcCCcceEcCCccccCcc
Confidence 99999758999999999999999999997799999999999999999998543
No 2
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A
Probab=100.00 E-value=1.3e-95 Score=693.72 Aligned_cols=268 Identities=33% Similarity=0.540 Sum_probs=247.6
Q ss_pred cCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhC-CCCeEEEEeCCCCccc
Q 021828 13 LMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQL-PENIRVIEMSMNGSWF 91 (307)
Q Consensus 13 r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l-~~~v~~~~~~~~D~W~ 91 (307)
|||||||||++|||+|||+.++|+..++++|++|++||++||+||||+|+|++++...++.++ .++|+++++++||+|+
T Consensus 3 rmPaEweph~~~wm~wP~~~~~w~~~l~~~~~~~~~ia~aIa~~e~V~i~v~~~~~~~~~~l~~~~~v~~~~~~~nD~W~ 82 (330)
T 3hvm_A 3 RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIGYEMLKNLPGVEIAKVDTNDTWA 82 (330)
T ss_dssp EECCTTSCCSEEEEECCCSSSGGGGGHHHHHHHHHHHHHHHHTTSEEEEEECTTCHHHHHHHHTCTTEEEEECCCSSSCH
T ss_pred ccCCCcCccccEEEEeCCCCcchhhhHHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcCCCceEEEEcCCCCchh
Confidence 899999999999999999999999999999999999999999999999999988766653333 5799999999999999
Q ss_pred cccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHH--hcCCCcccccceecCCceEECC
Q 021828 92 RDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILS--TERLPRFPHSMVLEGGSIHVDG 169 (307)
Q Consensus 92 RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~--~~g~~~~~~~lvlEGG~i~~dG 169 (307)
||+||+||. ++|+ +++|||+||+||+| ++|++|++++++|++ ..|+++++++||+|||||++||
T Consensus 83 RD~GP~fv~-~~g~--------~~~vdf~FNgWG~k-----~~~~~D~~v~~~~~~~~~~~~~~~~~~lVlEGGsIe~DG 148 (330)
T 3hvm_A 83 RDFGAISIE-NHGV--------LECLDFGFNGWGLK-----YPSNLDNQVNFKLKSLGFLKHPLKTMPYVLEGGSIESDG 148 (330)
T ss_dssp HHHSCEEEE-ETTE--------EEEEEEECCHHHHT-----SCCTTGGGHHHHHHHTTCCCSCEEEEEEECCGGGEEECS
T ss_pred hccCceEEe-cCCC--------EEEEeeecccccCc-----CCcchHHHHHHHHHHHhhcCCceecCCeEecCCcEEECC
Confidence 999999995 4666 89999999999995 578999999999999 7899999999999999999999
Q ss_pred CceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCC-ccC--------------------------------
Q 021828 170 EGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRG-LFG-------------------------------- 216 (307)
Q Consensus 170 ~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G-~~g-------------------------------- 216 (307)
+||+||||+||||+||||+|||+|||++|+++||++||||||+| +.|
T Consensus 149 ~GTlltTe~clLn~nRNP~lsk~eiE~~L~~~LGv~kviWL~~G~l~~DdTdgHID~larFv~p~~v~~~~~~d~~d~~y 228 (330)
T 3hvm_A 149 AGSILTNTQCLLEKNRNPHLNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSACEDKNDEHY 228 (330)
T ss_dssp SSEEEEEHHHHTCTTTSTTSCHHHHHHHHHHHHCCSEEEEECCCCCTTCCSSCCGGGTEEEEETTEEEEEECCCTTSTTH
T ss_pred CceEEEEeehhcCCCCCCCCCHHHHHHHHHHHhCCCEEEEECCCCcCCCCCCccchheeEecCCCEEEEEcCCCCCCccH
Confidence 99999999999999999999999999999999999999999999 665
Q ss_pred ----------------------cccCCCCccc--ccCccccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCCCCE
Q 021828 217 ----------------------MIHDGEAKPR--LAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYE 272 (307)
Q Consensus 217 ----------------------l~~~p~~~~~--~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP~r~ 272 (307)
|+++|.|.+. .+|+|++|||+||||+|++||||+||++ +|++|+++||++||+ +
T Consensus 229 ~~~~~~~~~L~~~~da~Gr~~~i~~lp~P~~~~~~~g~rl~aSY~Nfli~Ng~VivP~fgd~-~D~~A~~~l~~~fP~-~ 306 (330)
T 3hvm_A 229 TALKKMQEELKTFKKLDKTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNDALIVPTYNDP-KDALILETLKQHTPL-E 306 (330)
T ss_dssp HHHHHHHHHHHHCBCTTSCBCEEEEEECCSCCBCTTCCBCCCCTTCCEEETTEEEEEECSCT-THHHHHHHHHTTCSS-E
T ss_pred HHHHHHHHHHHhhhhccCCceEEEEeCCCCccccCCCCCcccchhheeeECCEEEEecCCCh-HHHHHHHHHHHhCCC-C
Confidence 2233443333 3689999999999999999999999999 899999999999999 9
Q ss_pred EEecCchhHHhhCCCceeeecCccC
Q 021828 273 VVGIERAREIVLGGGNIHCITQQQP 297 (307)
Q Consensus 273 Vv~I~~~~~l~~~GG~iHCiT~q~P 297 (307)
||+|+ |++|+.+||||||+|||+|
T Consensus 307 Vv~i~-~~~i~~~gG~iHCiTqQ~p 330 (330)
T 3hvm_A 307 VIGVD-CNTLIKQHGSLHCVTMQLY 330 (330)
T ss_dssp EEEEE-CHHHHHTTCCGGGGCEEEC
T ss_pred EEEEE-hHHHHhCCCccEEccCcCC
Confidence 99999 9999999999999999998
No 3
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=100.00 E-value=1.6e-94 Score=699.74 Aligned_cols=287 Identities=47% Similarity=0.844 Sum_probs=268.5
Q ss_pred CCCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEE
Q 021828 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRV 81 (307)
Q Consensus 2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~~~v~~ 81 (307)
++.++|++.+||||||||||++|||+|||+.++|+..+.++|++|++||++|++||||+|+|++++.+.|+++|+.+|++
T Consensus 5 ~~~~~p~~~~~rmPaEweph~~~wm~wP~~~~~w~~~~~~~~~~~~~ia~aIa~~e~V~i~v~~~~~~~a~~~l~~~V~~ 84 (389)
T 2jer_A 5 IVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITV 84 (389)
T ss_dssp CCSCCHHHHTCBCCCTTSCEEEEEEECCCCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTTSEE
T ss_pred cccCCcccCCcccCCCccchheEEEecCCCccchhhhHHHHHHHHHHHHHHHhCCCcEEEEECHHHHHHHHHHccCCcEE
Confidence 35667877899999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred EEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc-cccee
Q 021828 82 IEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-HSMVL 160 (307)
Q Consensus 82 ~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~-~~lvl 160 (307)
+++++||+|+||+||+||++++|+ +++++|+||+||++.++||++|..|+++++++++.+|+++++ +++|+
T Consensus 85 ~~~~~~D~W~RD~GP~~v~~~~g~--------~~~vdf~FN~WGg~~~g~~~~~~~D~~v~~~~~~~~g~~~~~~~~~vl 156 (389)
T 2jer_A 85 YEMSNNDAWVRDCGPSFVINDHGE--------IRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVL 156 (389)
T ss_dssp EECCCSSSCHHHHSCEEEECTTSC--------EEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEEEEC
T ss_pred EEcCCCCEecccccceEEecCCCC--------EEEEEeecccccccccccccCccchHHHHHHHHHHcCCCeEecCCeEE
Confidence 999999999999999999987777 899999999999977777899999999999999999999988 89999
Q ss_pred cCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC------------------------
Q 021828 161 EGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG------------------------ 216 (307)
Q Consensus 161 EGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g------------------------ 216 (307)
|||+|++||+||+|||++||||+||||+|||+|||++|+++||++||||||+|+.|
T Consensus 157 EGGsi~~DG~GTlltTe~clLn~nRNP~lsk~eiE~~Lk~~LGv~kvIWL~~Gl~~DdTdgHID~~arFv~p~~vl~~~~ 236 (389)
T 2jer_A 157 EGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYT 236 (389)
T ss_dssp CGGGEEECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECC
T ss_pred ccCcEEECCCceEEEEeeeecCCCCCCCcCHHHHHHHHHHHcCCCEEEEcCCcCCCCCCCCchhheeEEeCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999998765
Q ss_pred ------------------------------cccCCCCcc------------------cccCccccccceeEEEECCeEEe
Q 021828 217 ------------------------------MIHDGEAKP------------------RLAGTRLAASYVNFYIANGGIIT 248 (307)
Q Consensus 217 ------------------------------l~~~p~~~~------------------~~~g~~l~asY~Nfli~N~~Viv 248 (307)
|+++|.+.+ +.+|+|+++||+||||+|++|||
T Consensus 237 ~d~~dp~y~~~~~~~~~L~~~~da~Gr~~~ii~lP~p~~~~~~~~~~~~~~~~g~~~~~~g~rl~asY~Nfli~Ng~Viv 316 (389)
T 2jer_A 237 EDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIV 316 (389)
T ss_dssp CCTTSTTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTEEEE
T ss_pred CCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCcccccccccccccccccccccCCCCccceeeEEEEECCEEEE
Confidence 222333322 45688999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021828 249 PQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 298 (307)
Q Consensus 249 P~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~ 298 (307)
|+||++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+
T Consensus 317 P~fgd~-~D~~A~~~L~~~fP~r~Vi~v~-~~~i~~gGG~iHCiTqq~P~ 364 (389)
T 2jer_A 317 PQYGDE-NDRLALEQVQTMFPDKKIVGVN-TVEVVYGGGNIHXITQQEPK 364 (389)
T ss_dssp EECSCT-THHHHHHHHHHHSTTSEEEEEE-CHHHHTTTCCTGGGCEEEEC
T ss_pred ccCCCc-hhHHHHHHHHHHCCCCEEEEee-HHHHHhcCCCCeEeccccCc
Confidence 999999 8999999999999999999999 99999999999999999998
No 4
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=100.00 E-value=8.4e-94 Score=693.14 Aligned_cols=290 Identities=50% Similarity=0.869 Sum_probs=267.2
Q ss_pred CCCCCCCCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC----C
Q 021828 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP----E 77 (307)
Q Consensus 2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~----~ 77 (307)
+|.++|++.+||||||||||++|||+|||+.++|+..+.++|++|++||++||+||||+|+|++++.+.|+++|+ .
T Consensus 5 ~~~~~p~~~~~rmPaEweph~~~~m~wP~~~~~w~~~~~~~~~~~~~ia~aIa~~e~V~~~v~~~~~~~a~~~l~~~~~~ 84 (377)
T 2ewo_A 5 IKNTTPKQDGFRMPGEFEKQKQIWMLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSELGSH 84 (377)
T ss_dssp ECSSCHHHHTCCCCCTTSCEEEEEECCCCCTTTSSGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHHHTTTCC
T ss_pred hccCCcccCCcccCCCcChhheEEEecCCCccchhhhHHHHHHHHHHHHHHHHCCCcEEEEECHHHHHHHHHHhhhcCCC
Confidence 456788778999999999999999999999999999999999999999999999999999999988888999987 7
Q ss_pred CeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc-c
Q 021828 78 NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-H 156 (307)
Q Consensus 78 ~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~-~ 156 (307)
+|+++++++||+|+||+||+||++++|+ ++++||+||+||++.++||++|..|+++++++++.+|++.++ +
T Consensus 85 ~V~~~~~~~dD~W~RD~Gp~~v~~~~g~--------~~~vdf~FN~WG~~~~g~~~~~~~D~~v~~~~~~~~g~~~~~~~ 156 (377)
T 2ewo_A 85 NIRIIEMTNDDAWIRDCGPTFLVNDKGD--------LRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTK 156 (377)
T ss_dssp SEEEEECCCSSCCTTTSSCEEEECSSSC--------EEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEcCCCCEecccccceEEEcCCCC--------EEEEEeecccccccccccccCccchhHHHHHHHHHcCCCeEecC
Confidence 8999999999999999999999987777 899999999999999999999999999999999999999988 8
Q ss_pred cceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC--------------------
Q 021828 157 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-------------------- 216 (307)
Q Consensus 157 ~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g-------------------- 216 (307)
++|+|||+|++||+||+|||++||||+||||+|||+|||++|+++||++||||||+|+.|
T Consensus 157 ~~vlEGGsi~~dG~GTlltTe~clLn~nRNp~lsk~eie~~Lk~~LG~~kvIWL~~gl~~DdTdgHiD~~arfv~p~~vl 236 (377)
T 2ewo_A 157 DFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPGEVA 236 (377)
T ss_dssp EEECCGGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETTEEE
T ss_pred CeEEcCCceEECCCceEEEEcccccCCCCCCccCHHHHHHHHHHHcCCCEEEEcCCccCCCCCCCchhheeEEeCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999998755
Q ss_pred ----------------------------------cccCCCCcc------------------cccCccccccceeEEEECC
Q 021828 217 ----------------------------------MIHDGEAKP------------------RLAGTRLAASYVNFYIANG 244 (307)
Q Consensus 217 ----------------------------------l~~~p~~~~------------------~~~g~~l~asY~Nfli~N~ 244 (307)
|+++|.+.+ +.+|+|+++||+|||++|+
T Consensus 237 ~~~~~d~~dp~y~~~~~~~~~L~~~~da~Gr~~~ii~lp~p~~~~~~~~~~g~~~~~g~~~~~~g~rl~asY~Nfli~N~ 316 (377)
T 2ewo_A 237 CIYTDDKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLIVNG 316 (377)
T ss_dssp EBCCCCTTSTTHHHHHHHHHHHHTCBCSSSCBCEECCBCBCSSCEECCCGGGSCCCCC-------CEECCBTTCCEEETT
T ss_pred EEecCCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCcccccccccccccccccccccCCCCccceeeEEEEECC
Confidence 222332222 4567899999999999999
Q ss_pred eEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCCCc
Q 021828 245 GIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPT 301 (307)
Q Consensus 245 ~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~~ 301 (307)
+||||+||++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+..+
T Consensus 317 ~VivP~f~d~-~D~~A~~~L~~~fP~r~Vi~v~-~~~i~~gGG~iHCiTqq~p~~~~ 371 (377)
T 2ewo_A 317 GIILPQYGDE-NDQLAKQQVQEMFPDRKVVGVR-TEEIAYGGGNIHCITQQQPATLE 371 (377)
T ss_dssp EEEEECCSCT-THHHHHHHHHHHSTTSEEEEEC-THHHHTTSCCTTTTCEEEECCC-
T ss_pred EEEEccCCCh-hhHHHHHHHHHHCCCCEEEEee-HHHHHhcCCCCeeeCccccCccc
Confidence 9999999998 8999999999999999999999 99999999999999999998654
No 5
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Probab=100.00 E-value=8.6e-93 Score=681.39 Aligned_cols=278 Identities=39% Similarity=0.783 Sum_probs=256.8
Q ss_pred CCCCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhH-HHHHhhCC---------C
Q 021828 8 ALHGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQW-ENARSQLP---------E 77 (307)
Q Consensus 8 ~~~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~-~~a~~~l~---------~ 77 (307)
++++||||||||||++|||+|||+.++|+..++++|++|++||++|++||||+|+|++++. +.|+++|+ .
T Consensus 2 ~~~~~rmPaEweph~~~~m~wP~~~~~w~~~~~~~~~~~~~ia~aIa~~e~V~i~v~~~~~~~~a~~~l~~~~~~~~~~~ 81 (355)
T 1xkn_A 2 SEPTYFMPPEWAPHASTWLSWPHKLESWPGKFEPVPAVFAELAYQLSRSETVNINVLDDAMEAQARELLKERDPEGKYAE 81 (355)
T ss_dssp CCCEEECCCTTSCEEEEEEECCCCGGGSTTCCTTHHHHHHHHHHHHHHHSEEEEEESSHHHHHHHHHHHHHHCTTCTTGG
T ss_pred CCCCceeCCCcCccceEEEecCCCccchhhHHHHHHHHHHHHHHHHhCCCcEEEEECcHHHHHHHHHHhhhcccccCCCC
Confidence 4569999999999999999999999999999999999999999999999999999999886 56888885 5
Q ss_pred CeEEEEeCCCCccccccCceEEEc-CCC-CCCCCCCCce-eEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcc
Q 021828 78 NIRVIEMSMNGSWFRDTGPTIVVN-KSS-ASSGAQAPKV-AGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRF 154 (307)
Q Consensus 78 ~v~~~~~~~~D~W~RD~gPi~v~~-~~g-~~~~~~~~~~-~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~ 154 (307)
+|+|+++++||+|+||+||+||++ ++| + + ++|||+||+||+| |+||+.|+++++++++.+|++++
T Consensus 82 ~v~~~~~~~~D~W~RD~GP~fv~~~~~g~~--------~~~~vdf~FN~WG~k----~~~~~~D~~v~~~~~~~~g~~~~ 149 (355)
T 1xkn_A 82 RIVFHRIPTNDAWCRDHGPNYVIRTQDGRR--------DKVIMNWEYNAWGGK----YEPYDDDNAVPERVAKAQGLPMV 149 (355)
T ss_dssp GEEEEECCCSSSCHHHHSCEEEEEEETTEE--------EEEEEEEECCHHHHT----SSCCHHHHHHHHHHHHHHTCCEE
T ss_pred ceEEEEcCCCCchhhcCcceEEEecCCCcc--------eeEEEcceeeccccc----CccCchHHHHHHHHHHHcCCCee
Confidence 899999999999999999999987 666 5 7 9999999999995 66799999999999999999999
Q ss_pred cccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC------------------
Q 021828 155 PHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG------------------ 216 (307)
Q Consensus 155 ~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g------------------ 216 (307)
++++|+|||+|++||+||+|||++||||+||||+|||+|||++|+++||++||||||+|+.|
T Consensus 150 ~~~~vlEGG~i~~dG~GTlltT~~clLn~nRNp~ls~~~ie~~L~~~LG~~~viwL~~Gl~~DdtdgHiD~~arfv~p~~ 229 (355)
T 1xkn_A 150 STGMVLEGGAIDVNGAGLLLTTTACLLNPNRNPSLGKAEIEAQLRRYLGIEKVLWLGDGIAGDDTDGHVDDMARFVNENT 229 (355)
T ss_dssp EEEEECCGGGEEECSSSEEEEEHHHHTCTTTCTTCCHHHHHHHHHHHHCCSEEEEECCCCTTCTTSSCGGGTEEEEETTE
T ss_pred cCCeEEccCcEEECCCceEEEEeeeecCCCCCCCCCHHHHHHHHHHHcCCcEEEEeCCccCCCCCCcchhheeEeeCCCE
Confidence 99999999999999999999999999999999999999999999999999999999998655
Q ss_pred ------------------------------------cccCCCCcc-cccCccccccceeEEEECCeEEeccCCCchhHHH
Q 021828 217 ------------------------------------MIHDGEAKP-RLAGTRLAASYVNFYIANGGIITPQFGDKKWDGE 259 (307)
Q Consensus 217 ------------------------------------l~~~p~~~~-~~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~ 259 (307)
|+++|.+.+ +.+|+|+++||+|||++|++||||+||++ +|++
T Consensus 230 vl~~~~~d~~d~~y~~~~~~~~~L~~~~da~Gr~~~ii~lp~p~~~~~~g~rl~asY~Nfli~Ng~VivP~fgd~-~D~~ 308 (355)
T 1xkn_A 230 VVIAVEEDPEDENYKPLRENYELLKTMTGLDGKPLNIVKLPMPEPVYYDGERLPASYANFYIANTVVLVPTYRCP-RDQQ 308 (355)
T ss_dssp EEEECCCCTTSTTHHHHHHHHHHHTTCBCTTSCBCEEEEECCCSCCEETTEECCCCTTCCEECSSEEEEEECSST-HHHH
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCccccCCCcccceeeEEEEECCEEEEeeCCCc-ccHH
Confidence 112232222 35678999999999999999999999999 8999
Q ss_pred HHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCC
Q 021828 260 AVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI 299 (307)
Q Consensus 260 Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~ 299 (307)
|+++||++||+|+||+|+ |++|+.+||||||+|||+|+.
T Consensus 309 A~~~L~~~fP~r~Vi~v~-~~~i~~gGG~iHCiTqq~p~~ 347 (355)
T 1xkn_A 309 AIDILQQCFPKREVVGID-CSDLIWGLGAIHCVTHEEPAM 347 (355)
T ss_dssp HHHHHHHHCTTSEEEEEE-CTTGGGGSCCTTTTCEEEECC
T ss_pred HHHHHHHHCCCCEEEEee-HHHHHHcCCCCeeeCccchhh
Confidence 999999999999999999 999999999999999999974
No 6
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6
Probab=100.00 E-value=9.3e-92 Score=672.87 Aligned_cols=274 Identities=31% Similarity=0.543 Sum_probs=251.7
Q ss_pred CCccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC----CCeEEEEeC
Q 021828 10 HGYLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP----ENIRVIEMS 85 (307)
Q Consensus 10 ~~~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia~~e~V~v~v~~~~~~~a~~~l~----~~v~~~~~~ 85 (307)
.+||||||||||++|||+|||+.++|+..++++|++|++||++|++||||+|+|++++ .|+++|+ .+|+|++++
T Consensus 2 ~~~rmPaEwep~~~~~m~wP~~~~~w~~~l~~~~~~~~~ia~aIa~~e~V~i~v~~~~--~a~~~l~~~~~~~v~~~~~~ 79 (349)
T 1zbr_A 2 TKRLFLPEWAPQEAVQLTWPHDRTDWAYMLDEVETCFVRIATAILRHERLIVVCPDRK--RVFGLLPPELHHRLYCFELP 79 (349)
T ss_dssp -CEEECCSSSCEEEEEEECCCTTSGGGGGHHHHHHHHHHHHHHHTTTSEEEEEESCHH--HHHHHSCGGGTTTEEEEECC
T ss_pred CCceeCCCcCceeeEEEEcCCCCcchhhHHHHHHHHHHHHHHHHhCCCcEEEEECCHH--HHHHHhhhcCCCceEEEECC
Confidence 5799999999999999999999999999999999999999999999999999999887 6888997 789999999
Q ss_pred CCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHH--HhcCCCc-c--ccccee
Q 021828 86 MNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKIL--STERLPR-F--PHSMVL 160 (307)
Q Consensus 86 ~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~--~~~g~~~-~--~~~lvl 160 (307)
+||+|+||+||+||+++ |+ +++|||+||+||+| ++|..|++++++++ +.+|++. . .+++|+
T Consensus 80 ~nD~W~RD~GP~fv~~~-~~--------~~~vdf~FN~WG~k-----~~~~~D~~v~~~l~~~~~~g~~~~~~~~~~~vl 145 (349)
T 1zbr_A 80 SNDTWARDHGGISLLAD-GR--------PMIADFAFNGWGMK-----FAAHHDNLITRRLHALGLFAEGVTLDNRLAFVL 145 (349)
T ss_dssp CSCCCHHHHSCEEEEET-TE--------EEEEEEECCHHHHS-----SCCTTGGGHHHHHHHTTCBCTTCEEEEEEEEEC
T ss_pred CCCeeeccCcceEEecC-Cc--------eEEEeeeeeccccc-----cCccccHHHHHHHHhhhhcCCceeeecCCCEEE
Confidence 99999999999999864 45 79999999999994 45899999999999 6799998 6 688999
Q ss_pred cCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCC-ccC-----------------------
Q 021828 161 EGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRG-LFG----------------------- 216 (307)
Q Consensus 161 EGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G-~~g----------------------- 216 (307)
|||||++||+||+|||++||||+||||+|||+|||++|+++||++||||||+| +.|
T Consensus 146 EGGsi~~dG~GTlltTe~clLn~nRNp~ls~~eie~~L~~~LGv~kviWL~~G~l~~DdTdgHiD~larFv~p~~vl~~~ 225 (349)
T 1zbr_A 146 EGGALETDGEGTLLTTDSCLFEPNRNAGLSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIVYVR 225 (349)
T ss_dssp CGGGCCBCSSSEEEEEHHHHTCTTTSTTSCHHHHHHHHHHHSCCSEEEEESSCCCTTCCSSSCGGGSEEEEETTEEEEEE
T ss_pred cCCcEEECCCceEEEeeeeeecCCcCCCCCHHHHHHHHHHHhCCcEEEEecCCccCCCCcCcchhheEEecCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999998 655
Q ss_pred -------------------------------cccCCCCcc-cccCccccccceeEEEECCeEEeccCCCchhHHHHHHHH
Q 021828 217 -------------------------------MIHDGEAKP-RLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVL 264 (307)
Q Consensus 217 -------------------------------l~~~p~~~~-~~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l 264 (307)
|+++|.+.+ +.+|+|+++||+|||++|++||||+||++ +|++|+++|
T Consensus 226 ~~d~~d~~y~~~~~~~~~L~~~~da~Gr~~~ii~lp~p~~~~~~g~rl~asY~Nfli~Ng~VivP~fgd~-~D~~A~~~l 304 (349)
T 1zbr_A 226 SEDPSDEHYSDLTAMEQELKELRRPDGQPYRLVPLPMAEALYDGADRLPATYANFLIINGAVLVPTYDSH-LDAVALSVM 304 (349)
T ss_dssp CCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEECCCCCEETTEECCCCSSCCEEETTEEEEEECSST-TTTHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCccccCCCcccceeeEEEEECCEEEEeeCCCc-ccHHHHHHH
Confidence 112232222 45688999999999999999999999999 899999999
Q ss_pred HHhCCCCEEEecCchhHHhhCCCceeeecCccCCCCc
Q 021828 265 SQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPT 301 (307)
Q Consensus 265 ~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~~ 301 (307)
|++||+|+||+|+ |++|+.+||||||+|||+|+...
T Consensus 305 ~~~fP~r~Vv~i~-~~~i~~~gG~iHCiTqq~P~~~~ 340 (349)
T 1zbr_A 305 QGLFPDREVIGID-CRPLVKQHGSLHCVTMQYPQGFI 340 (349)
T ss_dssp HHHCTTSEEEEEE-CHHHHHTSCCGGGGEEEEETTSB
T ss_pred HHHCCCCEEEEee-HHHHHhcCCCCeeeCccccCCCC
Confidence 9999999999999 99999999999999999997543
No 7
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A*
Probab=99.88 E-value=1.1e-22 Score=188.38 Aligned_cols=226 Identities=10% Similarity=0.026 Sum_probs=157.8
Q ss_pred ccCCCCCCcceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHH--cCccEEEEeCchhHHHHHhhCCCCeEEEEeCCCCc
Q 021828 12 YLMPAEWEPHSQCWMGWPERLDNWRDDALHAQRVFAKVATAIS--KFEPVTVCASAAQWENARSQLPENIRVIEMSMNGS 89 (307)
Q Consensus 12 ~r~paEwe~~~~~~lawP~~~~~w~~~l~~~~~~~~~la~~ia--~~e~V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~ 89 (307)
.|.|+++-++...||. +. . ...++.|++++.++++++. ....|..+-..+. -.|.+
T Consensus 11 v~~p~~~~~~~~~~~~-~~-~---~~~~~~A~~e~~~~~~~L~~~~Gv~V~~l~~~~~-----------------~Pd~v 68 (275)
T 2ci1_A 11 VRALPESLAQQALRRT-KG-D---EVDFARAERQHQLYVGVLGSKLGLQVVQLPADES-----------------LPDCV 68 (275)
T ss_dssp EECCCTTHHHHSCCSS-CC-S---CCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCTT-----------------CTTTT
T ss_pred EeCCCHHHhhhhcccc-cc-C---CCCHHHHHHHHHHHHHHHHhccCcEEEEeCCCCC-----------------CCCce
Confidence 4567777766555553 11 1 2357899999999999996 3567777654321 13779
Q ss_pred cccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc---ccceecCCceE
Q 021828 90 WFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP---HSMVLEGGSIH 166 (307)
Q Consensus 90 W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~---~~lvlEGG~i~ 166 (307)
|+||.+++ .+ ++ ... .+|-. +....+....+.+++.+|++... .+.++|||+++
T Consensus 69 F~rD~~~v--~~--~~--------~~~--~~~~~---------~~R~~E~~~~~~~~~~~g~~~~~~~~~~~~lEGGdv~ 125 (275)
T 2ci1_A 69 FVEDVAVV--XE--ET--------ALI--TRPGA---------PSRRKEADMMKEALEKLQLNIVEMKDENATLDGGDVL 125 (275)
T ss_dssp CGGGGEEE--ET--TE--------EEE--CCCSS---------GGGTTHHHHHHHHHHHTTCEEEECCCTTCCCCGGGEE
T ss_pred eccceEEE--eC--Cc--------eEE--ecCCc---------ccccccHHHHHHHHHHcCCCEEEecCCCceEccccEE
Confidence 99999973 32 22 233 33321 22345667888888889987664 46999999999
Q ss_pred ECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-c---cc---------CCCCccc-------
Q 021828 167 VDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-M---IH---------DGEAKPR------- 226 (307)
Q Consensus 167 ~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~kvIwL~~G~~g-l---~~---------~p~~~~~------- 226 (307)
++|+ |++++.+ +|+ ..+.++.|+++||..+|+||+..-.+ | .. .+.....
T Consensus 126 ~~g~-~~~vg~s-----~Rt----~~~~~~~l~~~l~~~~V~~l~~~~~~HlD~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (275)
T 2ci1_A 126 FTGR-EFFVGLS-----KRT----NQRGAEILADTFKDYAVSTVPVVDALHLKSFCSMAGPNLIAIGSSESAQKALKIMQ 195 (275)
T ss_dssp ECSS-EEEEEES-----SSC----CHHHHHHHHHHCTTSEEEEEECCSSSSGGGSEEEEETTEEEEECSHHHHHHHHHHH
T ss_pred EECC-EEEEEec-----CCC----CHHHHHHHHHhcCCCeEEEeeCCCCcChhhhccccCCCEEEEECchhchHHHHHHH
Confidence 9999 9999975 454 67778999999998999999742111 1 00 0110000
Q ss_pred -cc--Cc---ccc-ccceeEEEEC----CeEEecc--CCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeec
Q 021828 227 -LA--GT---RLA-ASYVNFYIAN----GGIITPQ--FGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCIT 293 (307)
Q Consensus 227 -~~--g~---~l~-asY~Nfli~N----~~VivP~--fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT 293 (307)
.. +- .++ .+|+|||.+| |.||+|. |+++ .+.+++++++ +++|++|+ +++|..+|||+||+|
T Consensus 196 ~l~~~~~~ii~~~~~~~~N~l~~N~l~~g~Vi~p~~~~~~~----~~~~~l~~~~-g~~vi~v~-~~el~k~gGg~hC~T 269 (275)
T 2ci1_A 196 QMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRTPEEYP----ESAKVYEKLK-DHMLIPVS-NSELEKVDGLLTXSS 269 (275)
T ss_dssp HHCSSCCEEEEESSGGGGCCEEEEETTTEEEEEECCTTTCH----HHHHHHTTCT-TSEEEECC-CHHHHTTTCCGGGGC
T ss_pred HHhcCCceEEECCChhhceEEEECCCCCCcEEEecCcccCh----hhHHHHHhcC-CCEEEEEE-cHHHhhCCcCceEEE
Confidence 00 11 112 4999999999 9999998 4444 5666777777 99999999 999999999999999
Q ss_pred CccCC
Q 021828 294 QQQPA 298 (307)
Q Consensus 294 ~q~P~ 298 (307)
||++.
T Consensus 270 ~~~~R 274 (275)
T 2ci1_A 270 VLINK 274 (275)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99874
No 8
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=99.87 E-value=2e-21 Score=178.23 Aligned_cols=201 Identities=14% Similarity=0.104 Sum_probs=145.2
Q ss_pred hhhHHHHHHHHHHHHHHHcC-ccEEEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCcee
Q 021828 37 DDALHAQRVFAKVATAISKF-EPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVA 115 (307)
Q Consensus 37 ~~l~~~~~~~~~la~~ia~~-e~V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~ 115 (307)
..++.|++++.++++++.+. ..|..+-..+. -.|.+|+||++.++ .++ ..
T Consensus 27 ~~~~~A~~e~~~~~~~L~~~Gv~V~~l~~~~~-----------------~Pd~vF~rD~~~~~----~~~--------~~ 77 (255)
T 1h70_A 27 PDYAKALEQHNAYIRALQTCDVDITLLPPDER-----------------FPDSVFVEDPVLCT----SRC--------AI 77 (255)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEEECCCTT-----------------CTTTTCTTTTEEEC----SSC--------EE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEcCCccc-----------------CcCcEeecCcEEEE----CCc--------EE
Confidence 46789999999999999766 56766654321 14789999999763 233 44
Q ss_pred EeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcC-CCcc--cccceecCCceEECCCceEEEecceecCCCCCCCCCHH
Q 021828 116 GIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTER-LPRF--PHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKG 192 (307)
Q Consensus 116 ~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g-~~~~--~~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~ 192 (307)
...|.+. ....+....+.+++..| .+.. ..+.++|||+++.||+| ++++.+ +| |.+
T Consensus 78 ~~~m~~~-----------~R~~E~~~~~~~l~~~g~~~v~~~~~~~~lEGGdv~~~g~~-~~vg~s-----~R----t~~ 136 (255)
T 1h70_A 78 ITRPGAE-----------SRRGETEIIEETVQRFYPGKVERIEAPGTVEAGDIMMVGDH-FYIGES-----AR----TNA 136 (255)
T ss_dssp ECBCSSG-----------GGTTHHHHHHHHHHHHSTTCEEECCTTCCBCGGGEEEETTE-EEEEEC-----SS----SCH
T ss_pred EeCCCCh-----------HHhchHHHHHHHHHHcCCCcEEEeCCCceEecceEEEECCE-EEEEEc-----cC----CcH
Confidence 4444433 23445567778888888 8776 56699999999999999 566654 34 678
Q ss_pred HHHHHHHHHh---CCceEEEcCCCccC-c---cc---------CCCC--cccccCc---cc---cccceeEEEECCeEEe
Q 021828 193 QIENELKAYL---GVMKIIWLPRGLFG-M---IH---------DGEA--KPRLAGT---RL---AASYVNFYIANGGIIT 248 (307)
Q Consensus 193 eie~~L~~~L---Gv~kvIwL~~G~~g-l---~~---------~p~~--~~~~~g~---~l---~asY~Nfli~N~~Viv 248 (307)
+.++.|++.| |.+ |||++..-.+ + .. .+.. .....+. .+ .++|+|||.+|+.||+
T Consensus 137 ~~~~~l~~~l~~~g~~-vi~~~~~~~~HlD~~~~~v~~~~~~~~~~~~~~~~~~~~~ii~~~~~e~~~~N~l~i~~~Vi~ 215 (255)
T 1h70_A 137 EGARQMIAILEKHGLS-GSVVRLEKVLHLKTGLAYLEHNNLLAAGEFVSKPEFQDFNIIEIPEEESYAANCIWVNERVIM 215 (255)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEECSSSSSGGGSEEECSTTEEEECGGGTTCGGGTTSEEEECCGGGGGGGCCEEETTEEEE
T ss_pred HHHHHHHHHHhhCCCE-EEEEECCCCcchhheeeecCCCEEEEECCcCCHhHhCceEEEECCCcccccccEEEECCEEEe
Confidence 9999999999 987 9999732111 1 00 0100 0000010 01 2799999999999999
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021828 249 PQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 296 (307)
Q Consensus 249 P~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 296 (307)
|.++ ..+.++|+++ +++|++|+ +++|..+|||+||+|+|.
T Consensus 216 ~~~~-----~~~~~~l~~~--g~~vi~v~-~~el~~~gG~~~C~t~~l 255 (255)
T 1h70_A 216 PAGY-----PRTREKIARL--GYRVIEVD-TSEYRKIDGGVSSMSLRF 255 (255)
T ss_dssp ESSC-----HHHHHHHHTT--TCEEEEEC-CHHHHTTTCCTTTTCEEC
T ss_pred CCCC-----HHHHHHHHHC--CCeEEEec-hHHHhcCCcCCeeeeeeC
Confidence 9864 3588999988 99999999 999999999999999984
No 9
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=99.72 E-value=1.7e-17 Score=162.66 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=98.0
Q ss_pred cceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhC-CceEEEcCCCc--cC--------------c--
Q 021828 157 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLG-VMKIIWLPRGL--FG--------------M-- 217 (307)
Q Consensus 157 ~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LG-v~kvIwL~~G~--~g--------------l-- 217 (307)
..++|||+++++|+ |+++|.+ +|+ +++.||+ |+++|| ..+||||+.+- .+ +
T Consensus 250 e~~lEGGDvl~~G~-~llvg~s-----~Rt---n~~~ie~-L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~ 319 (423)
T 1jdw_A 250 EPCFDAADFIRAGR-DIFAQRS-----QVT---NYLGIEW-MRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSN 319 (423)
T ss_dssp SCCBCGGGEEEETT-EEEECCC-----SSC---CHHHHHH-HHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEEC
T ss_pred cceeecceeEEeCC-EEEEEec-----ccC---CHHHHHH-HHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEe
Confidence 47999999999999 9999987 355 6899997 999998 79999998431 11 0
Q ss_pred ------------------ccCCCCcccccCcccccc----ceeEEEEC-CeEEeccCCCchhHHHHHHHHHHhCCCCEEE
Q 021828 218 ------------------IHDGEAKPRLAGTRLAAS----YVNFYIAN-GGIITPQFGDKKWDGEAVRVLSQAFPKYEVV 274 (307)
Q Consensus 218 ------------------~~~p~~~~~~~g~~l~as----Y~Nfli~N-~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv 274 (307)
+.+|.+... .+.++++| |+|||.+| +.||+|. .+..+.++|+++ +++||
T Consensus 320 ~~~~~~~~~~L~~~~~~iI~~p~~~~~-~~~~~~~s~~~~~~N~L~inpg~VI~~~-----~~~~~~~~L~~~--G~~Vi 391 (423)
T 1jdw_A 320 PDRPCHQIDLFKKAGWTIITPPTPIIP-DDHPLWMSSKWLSMNVLMLDEKRVMVDA-----NEVPIQKMFEKL--GITTI 391 (423)
T ss_dssp TTSCBTTHHHHHHTTCEEECCCCCCCC-TTSCCSSSCGGGGGCCEEEETTEEEEET-----TCHHHHHHHHHT--TCEEE
T ss_pred cchhHHHHHHHHhCCCEEEECCCchhc-cccccccccccceeeEEEECCCEEEEeC-----CCHHHHHHHHHC--CCEEE
Confidence 001111111 13345555 99999999 9999987 357899999998 99999
Q ss_pred ecCchhHHhhCCCceeeecCccCCCC
Q 021828 275 GIERAREIVLGGGNIHCITQQQPAIP 300 (307)
Q Consensus 275 ~I~~~~~l~~~GG~iHCiT~q~P~~~ 300 (307)
+|+ +++|..+|||+||+|++++...
T Consensus 392 ~v~-~~el~kggGg~hC~T~~l~R~~ 416 (423)
T 1jdw_A 392 KVN-IRNANSLGGGFHCWTCDVRRRG 416 (423)
T ss_dssp EEC-CHHHHTTTCCTTTTEEEEEESC
T ss_pred Eec-HHHHHhCCCCceeeeEEeECCC
Confidence 999 9999999999999999998643
No 10
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=99.61 E-value=4.8e-16 Score=148.63 Aligned_cols=125 Identities=12% Similarity=0.065 Sum_probs=93.2
Q ss_pred cceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc-eEEEcCCCc-cC--------------cc-c
Q 021828 157 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM-KIIWLPRGL-FG--------------MI-H 219 (307)
Q Consensus 157 ~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LGv~-kvIwL~~G~-~g--------------l~-~ 219 (307)
+.++|||+++++|. +++++.+ +|| +++.+| .|++.||.+ +++.++... .+ ++ +
T Consensus 175 ~~~lEGGdv~~~g~-~~~vg~s-----~Rt---~~~~ie-~l~~~l~~~~~v~~~~~~~~~~HlDt~~~~v~~~~vl~~~ 244 (348)
T 1bwd_A 175 EPVFDAANVLRFGT-DLLYLVS-----DSG---NELGAK-WLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNP 244 (348)
T ss_dssp SCCBCGGGEEEETT-EEEEECB-----TTB---CHHHHH-HHHHHHCTTSEEEEESSSCCSSCGGGTEEEEETTEEEECT
T ss_pred ceeEecceEEEECC-EEEEEec-----ccC---CHHHHH-HHHHHhcCCcEEEEecCCCCCcchhheEEecCCCEEEEeC
Confidence 59999999999996 6777765 688 799999 599999642 566665221 11 10 0
Q ss_pred -------------------CCCCcccccCcccccc----ceeEEEE-CCeEEeccCCCchhHHHHHHHHHHhCCCCEEEe
Q 021828 220 -------------------DGEAKPRLAGTRLAAS----YVNFYIA-NGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVG 275 (307)
Q Consensus 220 -------------------~p~~~~~~~g~~l~as----Y~Nfli~-N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~ 275 (307)
.|+......++++++| |+|||.+ |+.||+|. .|..+.++|+++ +++||+
T Consensus 245 ~~~~~~~~~~~L~~~~iI~~~~~~~~~~~~~~~~~~~w~~~N~l~i~~~~Vi~~~-----~~~~~~~~L~~~--G~~vi~ 317 (348)
T 1bwd_A 245 SRVNDENMPDFLRSWENITCPELVDIGFTGDKPHCSVWIGMNLLVVRPDLAVVDR-----RQTALIRLLEKH--GMNVLP 317 (348)
T ss_dssp TTCCTTTSCGGGTTSEEEECCCCCCCCCCSSSCSSCGGGGGCCEEEETTEEEEET-----TCHHHHHHHHHT--TCEEEE
T ss_pred CCCCcHHHHHHhcCCEEEECCCccccccccccccccccceeeEEEEcCCEEEEcC-----CCHHHHHHHHHC--CCEEEE
Confidence 0100001124566666 9999966 48999985 478899999998 999999
Q ss_pred cCchhHHhhCCCceeeecCccCCC
Q 021828 276 IERAREIVLGGGNIHCITQQQPAI 299 (307)
Q Consensus 276 I~~~~~l~~~GG~iHCiT~q~P~~ 299 (307)
|+ +++|..+|||+||+||++...
T Consensus 318 v~-~~el~~ggGg~hC~T~~l~R~ 340 (348)
T 1bwd_A 318 LQ-LTHSRTLGGGFHCATLDVRRT 340 (348)
T ss_dssp EC-CTTHHHHTCCTTTTCEEEEES
T ss_pred Ec-hHHHhcCCCCccccceeeEcC
Confidence 99 999999999999999998653
No 11
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A*
Probab=99.35 E-value=1.7e-12 Score=127.04 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=92.7
Q ss_pred ccceecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHhC---CceEEEcCCCc---c-C------------
Q 021828 156 HSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLG---VMKIIWLPRGL---F-G------------ 216 (307)
Q Consensus 156 ~~lvlEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~LG---v~kvIwL~~G~---~-g------------ 216 (307)
.+.++|||.++++|+|+++++. .+|| +++.+++..+.+|| +++|+|++.+- . .
T Consensus 219 ~~~~lEGGDvl~~g~~~llvG~-----s~RT---n~~~ie~l~~~l~~~g~~~~V~~l~~~~~~~~~HLDt~~~~l~~~~ 290 (418)
T 2a9g_A 219 GSSTLEGGDVMPIGNGVVLIGM-----GERS---SRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDL 290 (418)
T ss_dssp TTCCCCGGGEECCSSSEEEEEE-----SSSS---CHHHHHHHHHHHHHTTSCSEEEEEECCCCSSCCCHHHHEEEEETTE
T ss_pred CCCcEecceEEEECCceEEEEc-----CCcC---CHHHHHHHHHHhcCCCCccEEEEEecCCCCCCcChhheeEecCCCE
Confidence 3589999999999999999886 3688 78888886666557 78999997541 1 1
Q ss_pred c-c-c--CCCC---c------------------c------cccC---c--------------cccccceeEEEEC-CeEE
Q 021828 217 M-I-H--DGEA---K------------------P------RLAG---T--------------RLAASYVNFYIAN-GGII 247 (307)
Q Consensus 217 l-~-~--~p~~---~------------------~------~~~g---~--------------~l~asY~Nfli~N-~~Vi 247 (307)
+ + + .+.. . . ...| - .....|+|+|.+| +.||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~~g~~~~~iI~~~~d~~~~~~e~~~~~~N~L~i~pg~Vi 370 (418)
T 2a9g_A 291 VTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVV 370 (418)
T ss_dssp EEECHHHHTTCEEEEEEECTTSTTSEEEEECSSCHHHHHHHHTTCSCCEEEECC-------CCSCCCCCCCEEEETTEEE
T ss_pred EEEECCccCCccceeeccccccccceeecccchhHHHHHHHhcCCCceEEEeCCCchhhhhhHHhhccCcEEEECCCEEE
Confidence 0 0 0 0000 0 0 0001 0 0125899999887 8777
Q ss_pred eccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCC
Q 021828 248 TPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI 299 (307)
Q Consensus 248 vP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~ 299 (307)
+ |+. ...+.++|+++ +++||+|+ +++|..+|||+||+|++++..
T Consensus 371 ~--y~~---~~~~~~~L~~~--G~eVi~v~-~sel~kggGg~hCmT~~l~R~ 414 (418)
T 2a9g_A 371 G--YDR---NTYTNTLLRKA--GVEVITIS-ASELGRGRGGGHAMTCPIVRD 414 (418)
T ss_dssp E--ETT---CHHHHHHHHHT--TCEEEEEC-HHHHGGGSCCTGGGCEEEEEC
T ss_pred E--eCC---CHHHHHHHHHC--CCEEEEec-hHHHhhcCCCceecceeEecC
Confidence 5 554 35788889998 99999999 999999999999999998753
No 12
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=99.33 E-value=2.6e-11 Score=114.22 Aligned_cols=230 Identities=11% Similarity=0.076 Sum_probs=143.1
Q ss_pred CCCCCCcceeEEEecCCCCC-----Cc----chhhHHHHHHHHHHHHHHH-cC-ccEEEEeCchhHHHHHhhCCCCeEEE
Q 021828 14 MPAEWEPHSQCWMGWPERLD-----NW----RDDALHAQRVFAKVATAIS-KF-EPVTVCASAAQWENARSQLPENIRVI 82 (307)
Q Consensus 14 ~paEwe~~~~~~lawP~~~~-----~w----~~~l~~~~~~~~~la~~ia-~~-e~V~v~v~~~~~~~a~~~l~~~v~~~ 82 (307)
||.+|..=..+++-=|...- .| +..++.|++++.++++++- +. -.|..+-..+ .
T Consensus 29 ~~~~~~~~~~aivr~p~~s~~~~~~~~~~~~~~d~~~A~~q~~~l~~~Lr~~~Gv~V~~l~~~~-------~-------- 93 (308)
T 3i4a_A 29 HPAAFGRATHAVVRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGLQVVELPADE-------S-------- 93 (308)
T ss_dssp --CCTTCCSEEEEECCCTTHHHHSCCSSCCCCCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCT-------T--------
T ss_pred CcccccceeEEEEeCCCHHHhccccccccCCCCCHHHHHHHHHHHHHHHhhcCCCEEEEcCCCC-------C--------
Confidence 66777777778887775431 11 1356788888999998886 33 2343332111 1
Q ss_pred EeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc---ccce
Q 021828 83 EMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP---HSMV 159 (307)
Q Consensus 83 ~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~---~~lv 159 (307)
+ -|-++.||.+- +.+ + .++-.++. | +...........+.+..|.+... .+..
T Consensus 94 -~-Pd~vF~rD~~~--vi~--~----------~vii~~m~-~--------~~Rr~E~~~~~~~l~~~g~~i~~~~~~~~~ 148 (308)
T 3i4a_A 94 -L-PDCVFVEDVAV--VCE--E----------TALITRPG-A--------PSRRKEVDMMKEALEKLQLNIVEMKDENAT 148 (308)
T ss_dssp -C-TTTTCGGGGEE--EET--T----------EEEECCCS-S--------GGGGGGHHHHHHHHHTTTCEEEECCCTTCC
T ss_pred -C-CCeEeecCeEE--EEC--C----------EEEEeCCC-c--------hhhhhhHHHHHHHHHHCCCeEEEccCCCCc
Confidence 1 25589999885 332 1 23333332 1 11223334556666777877655 3589
Q ss_pred ecCCceEECCCceEEEecceecCCCCCCCCCHHHHHHHHHHHh-CCceEEEcCCC-ccCc------------ccCCCCcc
Q 021828 160 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYL-GVMKIIWLPRG-LFGM------------IHDGEAKP 225 (307)
Q Consensus 160 lEGG~i~~dG~GtlltTe~~lln~nRNp~lsk~eie~~L~~~L-Gv~kvIwL~~G-~~gl------------~~~p~~~~ 225 (307)
+|||.+..+|+. +++--+ .| |..+.-+.|++.| |. +|+.++-. ...+ +-.+....
T Consensus 149 lEGGDvl~~g~~-v~vG~s-----~R----Tn~~gi~~l~~~l~~~-~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~ 217 (308)
T 3i4a_A 149 LDGGDVLFTGRE-FFVGLS-----KR----TNQRGAEILADTFKDY-AVSTVPVADGLHLKSFCSMAGPNLIAIGSSESA 217 (308)
T ss_dssp CCGGGEEECSSC-EEEEES-----SS----CCHHHHHHHHHHTTTS-CEEEEECCTTCCGGGSEEEEETTEEEEECSHHH
T ss_pred CccceEEEECCE-EEEEEc-----hh----cCHHHHHHHHHHcCCC-eEEEEECCCccChhheEEeeCCCEEEEECchhc
Confidence 999999999975 555422 12 4466677788888 64 67777532 1110 00011000
Q ss_pred c-------c---cCc-c--c-cccceeEEEEC-----CeEEec-cCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhC
Q 021828 226 R-------L---AGT-R--L-AASYVNFYIAN-----GGIITP-QFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLG 285 (307)
Q Consensus 226 ~-------~---~g~-~--l-~asY~Nfli~N-----~~VivP-~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~ 285 (307)
. . .+. . + ...++|+|.+| ++|++| .++.+ .+.++++.| |+++|++|+ ++++.++
T Consensus 218 ~~~l~~l~~~~~~~~~iI~vpe~~a~N~L~ln~~~~~~vvi~~~~~~~p-~~~~~l~~l----~g~~vi~vd-~sel~k~ 291 (308)
T 3i4a_A 218 QKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYP-ESAKVYEKL----KDHMLIPVS-MSELEKV 291 (308)
T ss_dssp HHHHHHHHHTCSSCCEEEEESSGGGGCCEEEEETTTEEEEEEECTTTCH-HHHHHHHHC----TTEEEEEEC-CHHHHTT
T ss_pred HHHHHHHHhhccCCCEEEECChHHhCCEEEEccCCCCCEEEecCcccCc-ccHHHHHhc----CCCEEEEec-HHHHHHC
Confidence 0 0 111 1 1 13688999999 788998 68888 788877766 899999999 9999999
Q ss_pred CCceeeecCccCCCC
Q 021828 286 GGNIHCITQQQPAIP 300 (307)
Q Consensus 286 GG~iHCiT~q~P~~~ 300 (307)
|||+||+|++++...
T Consensus 292 GGsl~C~tl~l~R~~ 306 (308)
T 3i4a_A 292 DGLLTCCSVLINKKV 306 (308)
T ss_dssp TCCSGGGCEEECCC-
T ss_pred CCCceeeEEEEecCC
Confidence 999999999998643
No 13
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=97.59 E-value=9.9e-05 Score=72.13 Aligned_cols=52 Identities=17% Similarity=0.385 Sum_probs=41.6
Q ss_pred eeEEEE-CCeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021828 237 VNFYIA-NGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 296 (307)
Q Consensus 237 ~Nfli~-N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 296 (307)
+|+|-+ ++.||++.- ...-.+.|++. +.+|+.|+ .++|..+|||+||+|+.+
T Consensus 374 ~N~Lai~pg~VI~~~~-----n~~t~~~L~~~--GieVi~i~-~sEl~kggGg~rCmT~pL 426 (433)
T 4e4j_A 374 TNYLTIAPGVVVGYER-----NEKTQKALVEA--GIKVLSFN-GSQLSLGMGSARCMSMPL 426 (433)
T ss_dssp TCCEEEETTEEEEETT-----CHHHHHHHHHT--TCEEEEEC-CTTGGGGSCCTTTTCEEE
T ss_pred cCEEEecCCEEEEeCC-----CHHHHHHHHHC--CCEEEEec-hHHhhcCCCCceeCCeee
Confidence 688876 677777642 33456778886 89999999 999999999999999854
No 14
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Probab=96.36 E-value=0.0018 Score=62.92 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=41.8
Q ss_pred cceeEEEEC-CeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021828 235 SYVNFYIAN-GGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 296 (307)
Q Consensus 235 sY~Nfli~N-~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 296 (307)
--+|+|-++ |.||+ |.. .....+.|+++ +.+|+.|+ .++|..+|||+||+|+.+
T Consensus 349 ~g~N~L~i~pg~Vi~--~~~---n~~t~~~L~~~--G~~Vi~v~-~sEl~kggGg~rCmt~pl 403 (410)
T 1s9r_A 349 DGTNYLAIRPGVVIG--YSR---NEKTNAALEAA--GIKVLPFH-GNQLSLGMGNARCMSMPL 403 (410)
T ss_dssp TTTCCEEEETTEEEE--ETT---CHHHHHHHHHT--TCEEEEEC-CHHHHTTSCCTTTTCEEE
T ss_pred ccCCEEEECCCEEEe--cCC---CHHHHHHHHHC--CCEEEEec-hHHHhcCCCCceeceeEE
Confidence 356999776 66665 432 23444567887 89999999 999999999999999865
No 15
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Probab=56.76 E-value=88 Score=29.72 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=37.7
Q ss_pred ccCCCCCCcceeEEEecCCCC-----CCcc--------hhhHHHHHHHHHHHHHHHcCccEEEEe
Q 021828 12 YLMPAEWEPHSQCWMGWPERL-----DNWR--------DDALHAQRVFAKVATAISKFEPVTVCA 63 (307)
Q Consensus 12 ~r~paEwe~~~~~~lawP~~~-----~~w~--------~~l~~~~~~~~~la~~ia~~e~V~v~v 63 (307)
+..=.||.+-..++|.=|... ..|. ..++.|+++.-++++++-+. -|.|+.
T Consensus 11 ~~v~sE~g~L~~Vlv~rP~~~~~~l~p~~~~~~lf~~~~~~~~A~~Ehd~f~~~Lr~~-GveV~~ 74 (410)
T 1s9r_A 11 IHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKAN-DINVVE 74 (410)
T ss_dssp CBBCCSSSCEEEEEECCCCGGGGGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTT-TCEEEE
T ss_pred cccCCCCccccEEEEECCChHhhcCChhhhhhhcccCCCCHHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 566679999999999988743 2231 36788999999999999654 455544
No 16
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=51.05 E-value=36 Score=27.54 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEcCCCccCcccCCCCcccccCccccccceeEEEE--CCeEEeccCCCchhHHH---HH
Q 021828 187 PHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIA--NGGIITPQFGDKKWDGE---AV 261 (307)
Q Consensus 187 p~lsk~eie~~L~~~LGv~kvIwL~~G~~gl~~~p~~~~~~~g~~l~asY~Nfli~--N~~VivP~fg~~~~D~~---Al 261 (307)
|.||.+||.+++.-.|.-- |.| +|.-...+.+..++.+.|+-|-+-|-+ . +|.||.. .-.+ .+
T Consensus 19 P~lt~eqI~kQI~Yll~qG---w~p----~lEf~d~~~~~R~~~~~~~~~~~~yW~mWk----LPmFg~t-d~~~Vl~El 86 (128)
T 1wdd_S 19 PPLTVEDLLKQIEYLLRSK---WVP----CLEFSKVGFVYRENHRSPGYYDGRYWTMWK----LPMFGCT-DATQVLKEL 86 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CEE----EEEEESCCSCBCSSCCSTTCCBSCCCEEES----CCCTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---Cee----eEEecCCCceeeccCCCCCcccCCcccccC----ccCccCC-CHHHHHHHH
Confidence 7899999999998877421 211 222111111112345677777776655 3 7999976 3334 45
Q ss_pred HHHHHhCCCC--EEEecC
Q 021828 262 RVLSQAFPKY--EVVGIE 277 (307)
Q Consensus 262 ~~l~~~fP~r--~Vv~I~ 277 (307)
+..+++||+. +|+++|
T Consensus 87 ~~C~k~~P~~YVRligfD 104 (128)
T 1wdd_S 87 EEAKKAYPDAFVRIIGFD 104 (128)
T ss_dssp HHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHCCCCeEEEEEEe
Confidence 5556679987 578888
No 17
>2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6 d.126.1.5 PDB: 2dex_X 2dey_X 3b1u_A* 3b1t_A* 2dw5_A* 3apn_A 3apm_A 1wda_A* 1wd9_A* 1wd8_A 4dkt_A*
Probab=44.19 E-value=14 Score=37.66 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=41.5
Q ss_pred ceeEEEECCeEEecc-CCCc--hhH---HHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCc
Q 021828 236 YVNFYIANGGIITPQ-FGDK--KWD---GEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQ 295 (307)
Q Consensus 236 Y~Nfli~N~~VivP~-fg~~--~~D---~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q 295 (307)
=+|.++.++.+++|. ||.- +.| ++..+.++.+ +.+|.-|+.-..--..+|.+||-|.-
T Consensus 594 ~VN~lVLg~~l~iPkP~GPvI~G~d~lee~v~~l~~p~--Gl~vtFIDD~~syH~~~GeVHCgTNv 657 (671)
T 2dew_X 594 MVNMLVLGKHLGIPKPFGPVINGRCCLEEKVCSLLEPL--GLQCTFINDFFTYHIRHGEVHAGTNV 657 (671)
T ss_dssp TTSCEEETTEEEEECCCCCEETTEEHHHHHHHHHHGGG--TCEEEEECCTTTTGGGTCCTTTTEEE
T ss_pred ceeeEEeccceecCCCcCCccCCeeHHHHHHHHHHhhc--CCEEEEEcChHHHHhcCCceeccccc
Confidence 359999999999998 8842 234 2333444444 89999996354556789999999864
No 18
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=40.90 E-value=19 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.1
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEE
Q 021828 249 PQFGDKKWDGEAVRVLSQAFPKYEVV 274 (307)
Q Consensus 249 P~fg~~~~D~~Al~~l~~~fP~r~Vv 274 (307)
-.||.+ .=+++.++|++.||+++|.
T Consensus 114 ~gfG~A-dH~~t~~iLk~~YpdY~It 138 (144)
T 2hw4_A 114 MAYGPA-QHAISTEKIKAKYPDYEVT 138 (144)
T ss_dssp TTTCBC-CHHHHHHHHHHHSTTSEEE
T ss_pred cccCCC-CHHHHHHHHHHHCCCcEEE
Confidence 357877 6778999999999999974
No 19
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=40.79 E-value=17 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.0
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEE
Q 021828 249 PQFGDKKWDGEAVRVLSQAFPKYEVV 274 (307)
Q Consensus 249 P~fg~~~~D~~Al~~l~~~fP~r~Vv 274 (307)
-.||.+ .=+.+.++|++.||+++|.
T Consensus 105 ~~fG~A-dH~~t~~iLk~~ypdy~It 129 (135)
T 2nmm_A 105 MAYGPA-QHAISTEKIKAKYPDYEVT 129 (135)
T ss_dssp TTTBBC-CHHHHHHHHHHHCTTSEEE
T ss_pred cccCCC-CHHHHHHHHHHHCCCcEEE
Confidence 357877 6778999999999999974
No 20
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=37.41 E-value=21 Score=32.72 Aligned_cols=39 Identities=10% Similarity=0.280 Sum_probs=31.8
Q ss_pred eeEEEECCeEEeccCCCchhHHHHHHHHHHhCCCCEEEecC
Q 021828 237 VNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 277 (307)
Q Consensus 237 ~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~ 277 (307)
-++++.++.+++- .+.. +|.+|.+.|++.|++++|+.++
T Consensus 152 GDvl~~g~~v~vG-~s~R-Tn~~gi~~l~~~l~~~~Vv~v~ 190 (308)
T 3i4a_A 152 GDVLFTGREFFVG-LSKR-TNQRGAEILADTFKDYAVSTVP 190 (308)
T ss_dssp GGEEECSSCEEEE-ESSS-CCHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEECCEEEEE-Echh-cCHHHHHHHHHHcCCCeEEEEE
Confidence 4566777776664 5556 8999999999999999999998
No 21
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=33.81 E-value=27 Score=31.07 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEEcC
Q 021828 184 NRNPHLTKGQIENELKAYLGVMKIIWLP 211 (307)
Q Consensus 184 nRNp~lsk~eie~~L~~~LGv~kvIwL~ 211 (307)
|-.|.....++|++|++.||+++++.+|
T Consensus 2 ~~~~~~~~~~Le~~L~~~fgL~~~~Vv~ 29 (264)
T 2r5f_A 2 NARPQGLHLELETRLQKMYGIRQVIVVE 29 (264)
T ss_dssp ----CCTTHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCccccHHHHHHHHHHHhCCCEEEEeC
Confidence 3455556689999999999999999998
No 22
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=30.50 E-value=43 Score=29.80 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEE
Q 021828 184 NRNPHLTKGQIENELKAYLGVMKIIW 209 (307)
Q Consensus 184 nRNp~lsk~eie~~L~~~LGv~kvIw 209 (307)
|++|.-...++|++|++.||++.+|.
T Consensus 2 ~~~p~~~~~~Le~~L~~~fgL~~~vV 27 (267)
T 3nze_A 2 NASPFDTGPELESQIRNQYGVDVHVV 27 (267)
T ss_dssp -CCTTCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCcchHHHHHHHHHHHhCCcEEEE
Confidence 78898899999999999999955444
No 23
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=26.60 E-value=44 Score=25.70 Aligned_cols=21 Identities=5% Similarity=0.311 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhCCCCEEEec
Q 021828 256 WDGEAVRVLSQAFPKYEVVGI 276 (307)
Q Consensus 256 ~D~~Al~~l~~~fP~r~Vv~I 276 (307)
..++.|+.-|+.||++.|.-|
T Consensus 38 ~k~eIL~YCrkvYP~l~ItnV 58 (96)
T 1mwp_A 38 TKEGILQYCQEVYPELQITNV 58 (96)
T ss_dssp SHHHHHHHHHHHSTTSCEEEE
T ss_pred ChHHHHHHHHHHCCCCcccee
Confidence 467899999999999999887
No 24
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=24.37 E-value=53 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEcCC
Q 021828 187 PHLTKGQIENELKAYLGVMKIIWLPR 212 (307)
Q Consensus 187 p~lsk~eie~~L~~~LGv~kvIwL~~ 212 (307)
|-.+ .++|++|++.||+++++.+|.
T Consensus 6 p~~~-~~Le~~L~~~fgL~~~~Vvp~ 30 (267)
T 3kv1_A 6 PVYS-VQLEQKLVEKFNLKRALISLD 30 (267)
T ss_dssp ---C-HHHHHHHHHHHTCSEEEEECC
T ss_pred CccH-HHHHHHHHHHhCCCEEEEeCC
Confidence 4444 899999999999999999985
No 25
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=23.84 E-value=45 Score=29.61 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHhCCceEEEcCC
Q 021828 186 NPHLTKGQIENELKAYLGVMKIIWLPR 212 (307)
Q Consensus 186 Np~lsk~eie~~L~~~LGv~kvIwL~~ 212 (307)
+|.-...++|++|++.||+++++.+|.
T Consensus 8 ~p~~~~~~Le~~L~~~fgL~~v~Vvp~ 34 (266)
T 3efb_A 8 YDYNENLWLEQQLKQKFGLKDVVVVSG 34 (266)
T ss_dssp ----CCHHHHHHHHHHHTCSEEEEECC
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEEcC
Confidence 344455799999999999999999985
No 26
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=21.15 E-value=52 Score=25.11 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCCcccccceecCC-ceEECCC--ceEEEecceecCCCCCCC----CCHHHHHHHHHHHhCCc
Q 021828 138 DLQVARKILSTERLPRFPHSMVLEGG-SIHVDGE--GTCLTTEECLLNKNRNPH----LTKGQIENELKAYLGVM 205 (307)
Q Consensus 138 D~~v~~~l~~~~g~~~~~~~lvlEGG-~i~~dG~--GtlltTe~~lln~nRNp~----lsk~eie~~L~~~LGv~ 205 (307)
-.++.+.+++.+|-|....-+.++.+ .+...|. -.+++.=+++ ..++|. ++ ++|-+.|.+.||+.
T Consensus 19 ~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgGs~~P~a~~~v~si--g~~~~~~n~~~s-~~i~~~l~~~Lgi~ 90 (114)
T 3djh_A 19 LSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSI--GKIGGAQNRSYS-KLLCGLLAERLRIS 90 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSSCEEEEEEES--SCCSHHHHHHHH-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcCcCCCEEEEEEEEc--cCCCHHHHHHHH-HHHHHHHHHHhCcC
Confidence 34677888888998876666656544 5666663 2344433333 234432 22 35777788888876
No 27
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=20.86 E-value=70 Score=26.40 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=24.4
Q ss_pred eEEeccCCCchhHHHHHHHHH-HhCCCCEEEecCc
Q 021828 245 GIITPQFGDKKWDGEAVRVLS-QAFPKYEVVGIER 278 (307)
Q Consensus 245 ~VivP~fg~~~~D~~Al~~l~-~~fP~r~Vv~I~~ 278 (307)
.||+|+|+.++.=.++++-+. +.+|+.+||-|++
T Consensus 8 sViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd 42 (240)
T 3bcv_A 8 SVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDD 42 (240)
T ss_dssp EEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEEC
Confidence 489999997634345666554 4578889998874
Done!