BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021833
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
 pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
          Length = 308

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 42  DAVMSSIMVRHPRFRSVLVRDKRGLEHWRETSVDIDRHFVEVHDSTSVNDYVAGLSFSSP 101
           +A++ ++ V++  F+ +   DKR  EH    S         + ++T+  D  AGL F +P
Sbjct: 106 EAIVENLKVKNELFKRL---DKRAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162

Query: 102 L 102
           +
Sbjct: 163 V 163


>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
 pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
          Length = 293

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 42  DAVMSSIMVRHPRFRSVLVRDKRGLEHWRETSVDIDRHFVEVHDSTSVNDYVAGLSFSSP 101
           +A++ ++ V++  F+ +   DKR  EH    S         + ++T+  D  AGL F +P
Sbjct: 95  EAIVENLKVKNELFKRL---DKRAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 151

Query: 102 L 102
           +
Sbjct: 152 V 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,968,042
Number of Sequences: 62578
Number of extensions: 344605
Number of successful extensions: 708
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 6
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)