Query 021833
Match_columns 307
No_of_seqs 158 out of 1056
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 09:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021833.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021833hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5aa1 c.43.1.2 (A:1-174) Vib 99.6 2.2E-15 1.6E-19 123.4 9.3 133 9-145 1-145 (174)
2 d1q9ja1 c.43.1.2 (A:1-175) Pol 99.4 3.6E-12 2.6E-16 103.8 13.3 133 6-145 7-143 (175)
3 d1q9ja2 c.43.1.2 (A:181-418) P 97.7 3.4E-05 2.5E-09 64.3 8.1 72 216-295 39-114 (238)
4 d1l5aa2 c.43.1.2 (A:175-424) V 96.1 0.0045 3.3E-07 51.0 6.3 61 220-291 46-107 (250)
5 d3claa_ c.43.1.1 (A:) Chloramp 52.7 2.7 0.0002 33.0 1.9 24 121-144 184-207 (213)
6 d1q23a_ c.43.1.1 (A:) Chloramp 51.9 3.5 0.00025 32.4 2.4 22 121-142 184-205 (214)
7 d1nija2 d.237.1.1 (A:224-318) 41.1 12 0.00086 24.9 3.6 31 27-58 4-36 (95)
8 d3claa_ c.43.1.1 (A:) Chloramp 36.2 10 0.00074 29.4 2.9 62 212-274 28-92 (213)
9 d2r1jl1 a.35.1.2 (L:3-68) P22 33.5 14 0.00098 22.5 2.6 22 218-240 43-64 (66)
10 d2ofya1 a.35.1.3 (A:3-84) Puta 32.8 13 0.00098 24.1 2.6 21 218-239 53-73 (82)
11 d1utxa_ a.35.1.3 (A:) Putative 31.5 13 0.00093 22.8 2.2 22 217-239 40-61 (66)
12 d1b0na2 a.35.1.3 (A:1-68) SinR 30.3 15 0.0011 22.5 2.4 21 218-239 42-62 (68)
13 d1y7ya1 a.35.1.3 (A:5-73) Rest 26.9 18 0.0013 22.2 2.3 22 217-239 48-69 (69)
14 d1q23a_ c.43.1.1 (A:) Chloramp 26.6 20 0.0015 27.7 3.1 61 213-274 30-93 (214)
15 d1y9qa1 a.35.1.8 (A:4-82) Prob 24.8 19 0.0014 22.6 2.2 22 217-239 47-68 (79)
16 d2b5aa1 a.35.1.3 (A:1-77) Regu 23.5 26 0.0019 21.8 2.7 23 217-240 49-71 (77)
No 1
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=99.58 E-value=2.2e-15 Score=123.42 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=100.9
Q ss_pred CCccccc-cc----ccCcceEEEE-EEEeCCCCChHHHHHHHHHHhhhcCccccceeeeCCCCCceeeecccCccCc-ee
Q 021833 9 LTPAGRL-FL----QPHMNTIIHC-VVGFERPIDVPKSKDAVMSSIMVRHPRFRSVLVRDKRGLEHWRETSVDIDRH-FV 81 (307)
Q Consensus 9 Ls~~d~~-~l----~~~~~~~i~~-v~~~~g~~d~~~l~~~l~~~~~~~~p~lr~r~~~~~~g~p~W~~~~~d~~~h-v~ 81 (307)
|+..++. |+ .|+.+.++++ .+.++|++|.+.|++++...+. +||.||+++... .+ ..|......+..+ +.
T Consensus 1 ~~~aQ~~~W~~~~~~p~~~~yni~~~~~i~g~ld~~~l~~A~~~l~~-rh~~LRt~f~~~-~~-~~~~~~~~~~~~~~~~ 77 (174)
T d1l5aa1 1 MLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVS-EIDLFRARFSAQ-GE-LYWHPFSPPIDYQDLS 77 (174)
T ss_dssp CCGGGHHHHHHHHHSTTSCCSEEEEEEEEESSCCHHHHHHHHHHHHH-TCGGGGEEECTT-CC-EEECSSCCCCEEEECT
T ss_pred CCHHHHHHHHHHHcCCCCCeeeccEEEEEcCCCCHHHHHHHHHHHHH-hCchheEEEecc-Cc-EEEEEEeeceeeEecc
Confidence 4555444 44 4888888776 6789999999999999999999 999999999875 33 3443211122211 11
Q ss_pred ee-CCchHHHHHHHHhhCCCCCCCCC-CCeEEEEEe--CCcEE-EEEeeccccccchHHHHHHHhcccc
Q 021833 82 EV-HDSTSVNDYVAGLSFSSPLSEDK-PLWEVHVLA--EHRCA-VFRIHHALGDGISLVSMLLAGCRLA 145 (307)
Q Consensus 82 ~~-~~~~~l~~~v~~~~~~~pld~~r-PlW~~~li~--~~~~a-~~k~HHal~DG~s~~~ll~~l~~~~ 145 (307)
.. .++++..+++.+...+ |+|..+ |++++.+++ ++++. ++.+||+++||+|...++.++...|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~dl~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y 145 (174)
T d1l5aa1 78 IHLEAEPLAWRQIEQDLQR-SSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHY 145 (174)
T ss_dssp TCTTHHHHHHHHHHHHHTS-CCCCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhC-CccccCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHH
Confidence 11 3355667778888899 999876 999999998 67777 9999999999999999999988655
No 2
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.37 E-value=3.6e-12 Score=103.81 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=84.6
Q ss_pred CCcCCcccccccccCcceEEEEEEEeCCCCChHHHHHHHHHHhhhcCccccceeeeCCCCCceeeecccCccCceeeeCC
Q 021833 6 DEPLTPAGRLFLQPHMNTIIHCVVGFERPIDVPKSKDAVMSSIMVRHPRFRSVLVRDKRGLEHWRETSVDIDRHFVEVHD 85 (307)
Q Consensus 6 ~~~Ls~~d~~~l~~~~~~~i~~v~~~~g~~d~~~l~~~l~~~~~~~~p~lr~r~~~~~~g~p~W~~~~~d~~~hv~~~~~ 85 (307)
.++|++.+++|..+. .++...+.++|++|.+.|++++...+. +||.||++++..+.+.+.++..+ +....+.....
T Consensus 7 ~r~l~~~e~~~~~~~--~~~~~~~~l~g~ld~~~l~~A~~~lv~-rh~~LRt~f~~~~~~~~~~~~~~-~~~~~~~~~d~ 82 (175)
T d1q9ja1 7 IRKLSHSEEVFAQYE--VFTSMTIQLRGVIDVDALSDAFDALLE-THPVLASHLEQSSDGGWNLVADD-LLHSGICVIDG 82 (175)
T ss_dssp EEECCHHHHHHHHTT--CEEEEEEEEESCCCHHHHHHHHHHHHH-HCGGGSEEEEECTTSSEEEEECC-SSSCCCEEEC-
T ss_pred HHHhCHHhhhcccCc--eEEEEEEEEcCCCCHHHHHHHHHHHHH-hchhheEEEEEeCCeeEEEEECC-CCCccEEEEEc
Confidence 345566666554333 333446789999999999999999999 99999999988733333333221 11112211111
Q ss_pred chHHHHHHHHhhCCCCCC--CCCCCeEEEEEe-CCcEE-EEEeeccccccchHHHHHHHhcccc
Q 021833 86 STSVNDYVAGLSFSSPLS--EDKPLWEVHVLA-EHRCA-VFRIHHALGDGISLVSMLLAGCRLA 145 (307)
Q Consensus 86 ~~~l~~~v~~~~~~~pld--~~rPlW~~~li~-~~~~a-~~k~HHal~DG~s~~~ll~~l~~~~ 145 (307)
..+... ...... +++ ...|++++.+.. ++++. ++.+||+++||+|...++.+++..|
T Consensus 83 ~~~~~~--~~~~~~-~~~l~~~~~l~~~~i~~~~~~~~l~l~~HH~i~Dg~S~~~ll~el~~~Y 143 (175)
T d1q9ja1 83 TAATNG--SPSGNA-ELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRY 143 (175)
T ss_dssp -------------C-CCCCCTTTCSEEEEEECCSSSCEEEEEEEGGGCCHHHHHHHHHHHHHHH
T ss_pred ccchhH--HHHhhc-ccCccCCCCeEEEEEEecCCeEEEEEEccccccCHhHHHHHHHHHHHHH
Confidence 111111 122234 444 455889888887 66666 9999999999999999999987654
No 3
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.75 E-value=3.4e-05 Score=64.27 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=56.1
Q ss_pred eecChHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhCCCCCCCCCceEEEEEeeeecCC----CcchhccCCCCeeE
Q 021833 216 ATFSIDDMKAVKKAIAGATINDVLFGVVSSGLSRYLDHRSPNALPEGLRITGLAMVNIRRQP----GLQERAGGTNLACF 291 (307)
Q Consensus 216 ~~~~~~~vk~ia~~~~g~TvNDvllA~~a~aL~ryl~~~g~~~~~~~~~l~~~vPvslR~~~----~~~~~~~~~~~~~~ 291 (307)
..-...++++.||++ |+|+|++++||++.+|++|..+. +..+.+.+|++.|+.- ..+.+|+..|...+
T Consensus 39 s~~~t~~l~~~~~~~-~~T~~~~l~aa~~~~l~~~~~~~-------~~~~~~~~~~~~r~~~~~~~~~~~~G~~~~~~~~ 110 (238)
T d1q9ja2 39 SKQQTSDLMAFGREH-RLSLNAVVAAAILLTEWQLRNTP-------HVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASY 110 (238)
T ss_dssp CHHHHHHHHHHHTTT-TCCHHHHHHHHHHHHHHHHHTCS-------SCCEEEEEEEETTTTSSSCCCTTTBSCCEEEEEE
T ss_pred CHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCC-------CccccccccccccccccCccccceeEeeeeeEEE
Confidence 333366888889999 99999999999999999997663 2468999999999742 23457888777777
Q ss_pred Eeec
Q 021833 292 CCQF 295 (307)
Q Consensus 292 ~~~~ 295 (307)
.+++
T Consensus 111 r~~~ 114 (238)
T d1q9ja2 111 LAEI 114 (238)
T ss_dssp EECC
T ss_pred EEec
Confidence 6664
No 4
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=96.07 E-value=0.0045 Score=50.97 Aligned_cols=61 Identities=10% Similarity=-0.206 Sum_probs=44.2
Q ss_pred hHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhCCCCCCCCCceEEEEEeeeecCCCcc-hhccCCCCeeE
Q 021833 220 IDDMKAVKKAIAGATINDVLFGVVSSGLSRYLDHRSPNALPEGLRITGLAMVNIRRQPGLQ-ERAGGTNLACF 291 (307)
Q Consensus 220 ~~~vk~ia~~~~g~TvNDvllA~~a~aL~ryl~~~g~~~~~~~~~l~~~vPvslR~~~~~~-~~~~~~~~~~~ 291 (307)
.++++++|+.+ |+|++.+++|+++..++ +... +++.+++|++.|...+.+ .+|-..|..=+
T Consensus 46 ~~~l~~~a~~~-~~s~~~~l~aa~~~~l~-~~~~---------~~~vig~~~~~R~~~~~~~~~G~~~n~lP~ 107 (250)
T d1l5aa2 46 NHLLLKLANAN-QIGWPDALVALCALYLE-SAEP---------DAPWLWLPFMNRWGSVAANVPGLMVNSLPL 107 (250)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHHHHH-HHST---------TCCEEEEEECCCTTSGGGGSCSCCCEEEEE
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHhh-hhcc---------ceeeccceecCCCChhhhhCeEeEEeeeeE
Confidence 45788899999 99999999999987775 4322 367899999999765543 33333444333
No 5
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=52.65 E-value=2.7 Score=33.01 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEeeccccccchHHHHHHHhccc
Q 021833 121 VFRIHHALGDGISLVSMLLAGCRL 144 (307)
Q Consensus 121 ~~k~HHal~DG~s~~~ll~~l~~~ 144 (307)
.+.+||.+.||.-+.+|+..+-+.
T Consensus 184 sls~dHrviDG~~aa~Fl~~lk~~ 207 (213)
T d3claa_ 184 SVQVHHAVCDGFHVARFINRLQEL 207 (213)
T ss_dssp EEEEETTTCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccHHHHHHHHHHHHH
Confidence 899999999999999999877543
No 6
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=51.92 E-value=3.5 Score=32.42 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEeeccccccchHHHHHHHhc
Q 021833 121 VFRIHHALGDGISLVSMLLAGC 142 (307)
Q Consensus 121 ~~k~HHal~DG~s~~~ll~~l~ 142 (307)
.+.+||.+.||.-+.+++..+-
T Consensus 184 sls~dHrvvDG~~~a~Fl~~lq 205 (214)
T d1q23a_ 184 AIQVHHAVCDGFHVGRMLNELQ 205 (214)
T ss_dssp EEEEETTTCCHHHHHHHHHHHH
T ss_pred EEEecccccchHHHHHHHHHHH
Confidence 8999999999999999988754
No 7
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.12 E-value=12 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=26.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHhhhcCc--cccce
Q 021833 27 CVVGFERPIDVPKSKDAVMSSIMVRHP--RFRSV 58 (307)
Q Consensus 27 ~v~~~~g~~d~~~l~~~l~~~~~~~~p--~lr~r 58 (307)
.++.+++|+|.+.|...+...+. .+| .||.+
T Consensus 4 ~~~~~~~P~d~~~f~~~l~~ll~-~~~~~ilR~K 36 (95)
T d1nija2 4 IVVELDYPVDISEVSRVMENLLL-ESADKLLRYK 36 (95)
T ss_dssp EEEEESSCBCHHHHHHHHHHHHH-HTTTTEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-hcCCCEEEEE
Confidence 37889999999999999998877 666 77776
No 8
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=36.23 E-value=10 Score=29.42 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=43.6
Q ss_pred EEEEeecChHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhC---CCCCCCCCceEEEEEeeee
Q 021833 212 KLATATFSIDDMKAVKKAIAGATINDVLFGVVSSGLSRYLDHRS---PNALPEGLRITGLAMVNIR 274 (307)
Q Consensus 212 ~~~~~~~~~~~vk~ia~~~~g~TvNDvllA~~a~aL~ryl~~~g---~~~~~~~~~l~~~vPvslR 274 (307)
-..+.+++...+.+.+|+. |.|++.+++-|++.||.++=.-+. +++...-+.+.+++.|...
T Consensus 28 ~~~t~~vDvT~l~~~~K~~-~~sf~~~~~~a~~~Al~~~P~~n~~~~~~~i~~~~~i~~~~aV~~~ 92 (213)
T d3claa_ 28 FSLTSKIDITTLKKSLDDS-AYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp EEEEEEEECHHHHHHHHTS-SCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred EEEEEEEeHHHHHHHHHHc-CCCeeHHHHHHHHHHHHhChHhhhEeccCeEEEecccceEEEEEcC
Confidence 3457788999999999999 999999999999999987643211 0011112346677777653
No 9
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=33.53 E-value=14 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.7
Q ss_pred cChHHHHHHHHHcCCCchhhHHH
Q 021833 218 FSIDDMKAVKKAIAGATINDVLF 240 (307)
Q Consensus 218 ~~~~~vk~ia~~~~g~TvNDvll 240 (307)
.+.+.+..+|+.+ ++++++++.
T Consensus 43 p~~~~l~~ia~~l-~v~~~~Ll~ 64 (66)
T d2r1jl1 43 PNGENLLALSKAL-QCSPDYLLK 64 (66)
T ss_dssp CBHHHHHHHHHHT-TSCHHHHHH
T ss_pred CCHHHHHHHHHHh-CCCHHHHhc
Confidence 4789999999999 999998874
No 10
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=32.80 E-value=13 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.1
Q ss_pred cChHHHHHHHHHcCCCchhhHH
Q 021833 218 FSIDDMKAVKKAIAGATINDVL 239 (307)
Q Consensus 218 ~~~~~vk~ia~~~~g~TvNDvl 239 (307)
.+++.+.+||+++ |+++.|++
T Consensus 53 ps~~tl~kia~~L-~v~~~~Ll 73 (82)
T d2ofya1 53 PAFFTIAAVARVL-DLSLDDVA 73 (82)
T ss_dssp CBHHHHHHHHHHT-TCCHHHHH
T ss_pred CCHHHHHHHHHHH-CCCHHHHH
Confidence 4789999999999 99999976
No 11
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=31.49 E-value=13 Score=22.76 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=19.3
Q ss_pred ecChHHHHHHHHHcCCCchhhHH
Q 021833 217 TFSIDDMKAVKKAIAGATINDVL 239 (307)
Q Consensus 217 ~~~~~~vk~ia~~~~g~TvNDvl 239 (307)
..+++.+.++|+.+ |+++++++
T Consensus 40 ~p~~~~l~~ia~~l-~v~~~~lf 61 (66)
T d1utxa_ 40 NPSLQLALKIAYYL-NTPLEDIF 61 (66)
T ss_dssp CCCHHHHHHHHHHT-TSCHHHHE
T ss_pred CCCHHHHHHHHHHH-CCCHHHHc
Confidence 35789999999999 99999874
No 12
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=30.28 E-value=15 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.0
Q ss_pred cChHHHHHHHHHcCCCchhhHH
Q 021833 218 FSIDDMKAVKKAIAGATINDVL 239 (307)
Q Consensus 218 ~~~~~vk~ia~~~~g~TvNDvl 239 (307)
.+++.+..+|+.+ |+++++++
T Consensus 42 ps~~~l~~ia~~l-~v~~~~l~ 62 (68)
T d1b0na2 42 PSIQFLEKVSAVL-DVSVHTLL 62 (68)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHH
T ss_pred CCHHHHHHHHHHH-CCcHHHHc
Confidence 4789999999999 99999986
No 13
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=26.86 E-value=18 Score=22.24 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=19.3
Q ss_pred ecChHHHHHHHHHcCCCchhhHH
Q 021833 217 TFSIDDMKAVKKAIAGATINDVL 239 (307)
Q Consensus 217 ~~~~~~vk~ia~~~~g~TvNDvl 239 (307)
..+++.+..+|+.+ |++++|++
T Consensus 48 ~p~~~~l~~ia~~l-~v~~~~lF 69 (69)
T d1y7ya1 48 NVSLVNILKLATAL-DIEPRELF 69 (69)
T ss_dssp CCBHHHHHHHHHHT-TSCGGGGC
T ss_pred CCCHHHHHHHHHHh-CcCHHHHC
Confidence 45789999999999 99999874
No 14
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=26.62 E-value=20 Score=27.65 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=43.6
Q ss_pred EEEeecChHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhC---CCCCCCCCceEEEEEeeee
Q 021833 213 LATATFSIDDMKAVKKAIAGATINDVLFGVVSSGLSRYLDHRS---PNALPEGLRITGLAMVNIR 274 (307)
Q Consensus 213 ~~~~~~~~~~vk~ia~~~~g~TvNDvllA~~a~aL~ryl~~~g---~~~~~~~~~l~~~vPvslR 274 (307)
..+.+++...+.+.+|.. |.|++..++=|++.||.++=+-+. +++...-+.+.+++.|...
T Consensus 30 ~it~~vDvT~l~~~~K~~-~~sf~~~~~~av~~Al~~~P~~n~~~~~~~i~~~~~i~i~iav~~~ 93 (214)
T d1q23a_ 30 NQTVQLDITAFLKTVKKN-KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHE 93 (214)
T ss_dssp EEEEEEECHHHHHHHHHT-TCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred EEEEEEcHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhChHhheEEcCCceeEcCccCeEEEEEcC
Confidence 457889999999999999 999999999999999988743211 0111112456677776653
No 15
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=24.80 E-value=19 Score=22.64 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.6
Q ss_pred ecChHHHHHHHHHcCCCchhhHH
Q 021833 217 TFSIDDMKAVKKAIAGATINDVL 239 (307)
Q Consensus 217 ~~~~~~vk~ia~~~~g~TvNDvl 239 (307)
..+++.+..+|+.+ |+++++++
T Consensus 47 ~p~~~~l~~ia~~l-~v~~~~l~ 68 (79)
T d1y9qa1 47 SPTIATLWKIASGL-EASFSAFF 68 (79)
T ss_dssp CCCHHHHHHHHHHH-TCCSGGGG
T ss_pred CCCHHHHHHHHHHH-CCCHHHHh
Confidence 45789999999999 99999986
No 16
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=23.48 E-value=26 Score=21.84 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=19.8
Q ss_pred ecChHHHHHHHHHcCCCchhhHHH
Q 021833 217 TFSIDDMKAVKKAIAGATINDVLF 240 (307)
Q Consensus 217 ~~~~~~vk~ia~~~~g~TvNDvll 240 (307)
..+++.+.++|+.+ |+|+.+++-
T Consensus 49 ~p~~~~l~~ia~~l-~v~~~~l~~ 71 (77)
T d2b5aa1 49 NISLINIHKICAAL-DIPASTFFR 71 (77)
T ss_dssp CCBHHHHHHHHHHT-TCCHHHHHH
T ss_pred CCCHHHHHHHHHHh-CCCHHHHhc
Confidence 35789999999999 999998763
Done!