BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021834
         (307 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
 pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
          Length = 74

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 248 EQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALI 306
           E++ R  +    CK C  ++  ++F+PC HL  C+ C   L  CP+C +  K ++   +
Sbjct: 15  EEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFL 73


>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
 pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
          Length = 74

 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 247 TEQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLT 296
           TE++ R  +   +CK C  R+  ++F+PC HL  C+ C   +D CP+C T
Sbjct: 14  TEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYT 63


>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
 pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
          Length = 74

 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 247 TEQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLT 296
           TE++ R  +   +CK C  R+  ++F+PC HL  C+ C   +D CP+C T
Sbjct: 14  TEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYT 63


>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
           Iap Repeat-Containing Protein 4 From Homo Sapiens
          Length = 75

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 247 TEQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLT 296
           TE++ R  +   +CK C  R+  ++F+PC HL  C+ C   +D CP+C T
Sbjct: 15  TEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYT 64


>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
           Promotes E3 Ligase Activation Via Dimerization
          Length = 345

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 248 EQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALI 306
           E++ R  +    CK C  ++  V+F+PC HL  C+ C   L  CP+C    K ++   +
Sbjct: 286 EEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFL 344


>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
 pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
          Length = 62

 Score = 38.5 bits (88), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 248 EQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALI 306
           E + R  +    CK C  R   ++F+PC HL  C  C   L  CP+C  P ++ +   +
Sbjct: 4   EAQLRRLQEERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTFL 61


>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
           Growth Regulator With Ring Finger Domain 1 Protein
          Length = 68

 Score = 36.6 bits (83), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 242 KGAAETEQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVC 294
            G++  E  + ++K  +VC+  N   + VL LPCRH C C  C  +   CP+C
Sbjct: 3   SGSSGVEPSEENSKDCVVCQ--NGTVNWVL-LPCRHTCLCDGCVKYFQQCPMC 52


>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
           Degradation Of The Ldl Receptor
 pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
           Degradation Of The Ldl Receptor
 pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
           Degradation Of The Ldl Receptor
 pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
           Degradation Of The Ldl Receptor
 pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
           Degradation Of The Ldl Receptor
 pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
           Degradation Of The Ldl Receptor
          Length = 79

 Score = 33.5 bits (75), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 243 GAAET---EQEQRSTKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVC 294
           GA +T   +++ R  K  M+C  C   +    F PC H   C +C A L +CPVC
Sbjct: 1   GAQQTRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVC 55


>pdb|3O11|H Chain H, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
 pdb|3O11|B Chain B, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
 pdb|3MCL|H Chain H, Anti-Beta-Amyloid Antibody C706 Fab In Space Group P21
          Length = 228

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 231 GFGESNNNYNYKGAAETEQEQRSTKMVMVCKGCNSRDSCVLF 272
           G G+SN+N N+KG A    +  S    M      S DS V +
Sbjct: 54  GSGKSNHNANFKGRATFTADTASNTAYMQLSSLTSEDSAVYY 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,187,346
Number of Sequences: 62578
Number of extensions: 168833
Number of successful extensions: 442
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 11
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)