Query 021834
Match_columns 307
No_of_seqs 218 out of 1092
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 5E-40 1.1E-44 298.1 11.9 193 94-306 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 2.3E-12 5E-17 124.9 1.8 54 253-306 286-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.1 5E-11 1.1E-15 84.9 2.0 44 257-300 2-49 (50)
4 KOG4275 Predicted E3 ubiquitin 99.0 3.3E-11 7.2E-16 114.8 -0.7 50 257-306 300-349 (350)
5 KOG4172 Predicted E3 ubiquitin 98.9 2.9E-11 6.2E-16 89.9 -3.5 50 258-307 8-62 (62)
6 KOG1571 Predicted E3 ubiquitin 98.8 1.8E-09 3.9E-14 105.2 0.5 55 253-307 301-355 (355)
7 KOG0978 E3 ubiquitin ligase in 97.8 0.00035 7.6E-09 73.9 13.3 47 253-300 639-690 (698)
8 KOG1785 Tyrosine kinase negati 97.7 8.9E-06 1.9E-10 81.1 0.9 49 257-306 369-423 (563)
9 PLN03208 E3 ubiquitin-protein 97.5 7.2E-05 1.6E-09 68.2 3.4 45 255-300 16-80 (193)
10 PHA02929 N1R/p28-like protein; 97.5 0.0001 2.2E-09 69.2 3.8 52 255-307 172-235 (238)
11 PF14634 zf-RING_5: zinc-RING 97.4 9.6E-05 2.1E-09 51.5 2.3 37 259-296 1-44 (44)
12 PF13923 zf-C3HC4_2: Zinc fing 97.4 6.8E-05 1.5E-09 50.8 1.3 34 260-294 1-39 (39)
13 smart00184 RING Ring finger. E 97.3 0.00017 3.6E-09 46.0 2.6 34 260-294 1-39 (39)
14 cd00162 RING RING-finger (Real 97.1 0.00052 1.1E-08 45.3 2.9 39 259-298 1-45 (45)
15 PF13639 zf-RING_2: Ring finge 97.0 0.00021 4.6E-09 49.3 0.9 36 259-295 2-44 (44)
16 KOG0823 Predicted E3 ubiquitin 97.0 0.00034 7.4E-09 65.3 2.3 49 254-303 44-99 (230)
17 KOG0317 Predicted E3 ubiquitin 97.0 0.00035 7.6E-09 67.1 2.1 51 255-306 237-291 (293)
18 PF00097 zf-C3HC4: Zinc finger 96.7 0.00077 1.7E-08 45.5 1.3 34 260-294 1-41 (41)
19 KOG0320 Predicted E3 ubiquitin 96.5 0.00088 1.9E-08 60.6 1.0 49 257-306 131-187 (187)
20 PHA02926 zinc finger-like prot 96.5 0.0011 2.3E-08 62.1 1.2 50 253-303 166-234 (242)
21 PF14447 Prok-RING_4: Prokaryo 96.5 0.0013 2.9E-08 49.0 1.4 43 257-300 7-51 (55)
22 TIGR00599 rad18 DNA repair pro 96.3 0.002 4.3E-08 64.6 1.7 46 254-300 23-72 (397)
23 KOG2177 Predicted E3 ubiquitin 96.0 0.0021 4.6E-08 56.1 0.6 42 254-296 10-55 (386)
24 KOG2164 Predicted E3 ubiquitin 96.0 0.0034 7.3E-08 64.4 2.0 43 257-300 186-237 (513)
25 COG5236 Uncharacterized conser 96.0 0.0035 7.6E-08 62.1 1.9 47 255-302 59-111 (493)
26 PF15227 zf-C3HC4_4: zinc fing 95.6 0.0071 1.5E-07 42.1 1.7 34 260-294 1-42 (42)
27 smart00504 Ubox Modified RING 95.5 0.011 2.3E-07 42.9 2.5 42 258-300 2-47 (63)
28 COG5574 PEX10 RING-finger-cont 95.2 0.0075 1.6E-07 57.5 1.0 44 256-300 214-263 (271)
29 KOG4692 Predicted E3 ubiquitin 94.8 0.0099 2.1E-07 59.1 0.7 45 255-300 420-468 (489)
30 COG5540 RING-finger-containing 94.5 0.028 6.1E-07 55.0 2.9 44 255-299 321-372 (374)
31 PF13445 zf-RING_UBOX: RING-ty 94.4 0.016 3.6E-07 40.8 0.8 27 260-288 1-31 (43)
32 COG5432 RAD18 RING-finger-cont 93.9 0.026 5.6E-07 55.0 1.4 43 256-299 24-70 (391)
33 KOG0802 E3 ubiquitin ligase [P 93.8 0.024 5.2E-07 58.5 1.1 46 253-299 287-341 (543)
34 KOG4628 Predicted E3 ubiquitin 92.7 0.066 1.4E-06 53.0 2.2 43 258-301 230-280 (348)
35 KOG0287 Postreplication repair 92.1 0.043 9.4E-07 54.4 0.0 45 256-301 22-70 (442)
36 KOG2879 Predicted E3 ubiquitin 92.1 0.1 2.2E-06 50.3 2.6 46 253-299 235-287 (298)
37 PF12678 zf-rbx1: RING-H2 zinc 91.6 0.14 3E-06 39.5 2.3 36 259-295 21-73 (73)
38 KOG2113 Predicted RNA binding 90.9 0.21 4.5E-06 49.3 3.3 48 257-304 343-392 (394)
39 COG5243 HRD1 HRD ubiquitin lig 90.8 0.15 3.2E-06 51.3 2.2 44 254-298 284-344 (491)
40 PF00038 Filament: Intermediat 89.7 18 0.0004 34.1 17.0 93 101-197 184-282 (312)
41 PF15619 Lebercilin: Ciliary p 89.4 15 0.00033 33.6 13.9 93 97-195 50-150 (194)
42 PF12240 Angiomotin_C: Angiomo 89.1 18 0.0004 33.7 14.2 83 103-194 67-167 (205)
43 KOG3039 Uncharacterized conser 88.9 0.44 9.5E-06 45.7 3.6 46 255-301 219-272 (303)
44 PF04641 Rtf2: Rtf2 RING-finge 88.0 0.49 1.1E-05 44.5 3.3 47 254-301 110-163 (260)
45 KOG1039 Predicted E3 ubiquitin 87.8 0.27 5.8E-06 48.8 1.6 47 255-302 159-224 (344)
46 PF09726 Macoilin: Transmembra 87.8 24 0.00052 38.3 16.2 58 142-199 545-602 (697)
47 KOG0804 Cytoplasmic Zn-finger 87.7 18 0.00039 37.5 14.3 91 95-185 326-425 (493)
48 PF14835 zf-RING_6: zf-RING of 87.5 0.31 6.7E-06 37.6 1.4 42 256-298 6-50 (65)
49 KOG1814 Predicted E3 ubiquitin 85.6 0.42 9.2E-06 48.5 1.6 45 254-299 181-240 (445)
50 KOG4159 Predicted E3 ubiquitin 83.8 0.52 1.1E-05 47.6 1.4 46 254-300 81-130 (398)
51 PF04216 FdhE: Protein involve 82.5 4 8.6E-05 38.8 6.7 48 257-305 172-228 (290)
52 KOG3002 Zn finger protein [Gen 82.5 0.73 1.6E-05 44.8 1.8 46 254-300 45-92 (299)
53 KOG1813 Predicted E3 ubiquitin 82.4 0.54 1.2E-05 45.9 0.8 46 258-304 242-291 (313)
54 COG5152 Uncharacterized conser 82.0 0.4 8.8E-06 44.7 -0.2 47 257-304 196-246 (259)
55 KOG0980 Actin-binding protein 81.9 65 0.0014 36.1 16.0 82 114-197 426-507 (980)
56 PF04710 Pellino: Pellino; In 80.6 0.52 1.1E-05 47.6 0.0 50 256-305 327-410 (416)
57 PF11559 ADIP: Afadin- and alp 79.9 18 0.00039 30.9 9.3 58 140-197 57-114 (151)
58 KOG0163 Myosin class VI heavy 79.6 22 0.00048 39.4 11.5 81 102-197 919-1007(1259)
59 PF00804 Syntaxin: Syntaxin; 79.6 26 0.00055 26.9 9.5 83 112-196 14-102 (103)
60 PF12329 TMF_DNA_bd: TATA elem 79.2 23 0.0005 27.6 8.8 58 140-197 3-60 (74)
61 COG5220 TFB3 Cdk activating ki 78.1 0.61 1.3E-05 44.7 -0.4 41 255-296 8-61 (314)
62 PF07888 CALCOCO1: Calcium bin 78.0 1E+02 0.0022 32.8 16.3 78 111-190 170-247 (546)
63 PHA00327 minor capsid protein 77.5 0.88 1.9E-05 41.1 0.5 48 23-75 74-126 (187)
64 KOG0828 Predicted E3 ubiquitin 77.5 0.81 1.7E-05 47.6 0.3 46 254-300 568-635 (636)
65 KOG3091 Nuclear pore complex, 77.4 22 0.00047 37.2 10.4 21 150-170 377-397 (508)
66 TIGR01837 PHA_granule_1 poly(h 77.4 31 0.00068 29.0 9.8 66 104-169 44-116 (118)
67 PF14362 DUF4407: Domain of un 77.3 53 0.0011 31.2 12.5 60 102-172 106-165 (301)
68 PF04564 U-box: U-box domain; 76.8 2.5 5.4E-05 32.3 2.8 44 256-300 3-51 (73)
69 KOG2932 E3 ubiquitin ligase in 76.1 1.2 2.5E-05 44.1 0.9 44 255-299 88-134 (389)
70 PF12126 DUF3583: Protein of u 76.0 85 0.0018 31.1 13.4 69 93-166 23-98 (324)
71 PF15066 CAGE1: Cancer-associa 75.5 48 0.001 34.7 12.1 60 141-200 452-526 (527)
72 PF06785 UPF0242: Uncharacteri 75.2 98 0.0021 31.3 14.3 100 96-196 91-213 (401)
73 KOG1001 Helicase-like transcri 75.2 1.2 2.6E-05 47.8 0.8 40 258-299 455-500 (674)
74 PF10205 KLRAQ: Predicted coil 74.8 38 0.00083 28.4 9.4 62 110-173 10-71 (102)
75 PF01166 TSC22: TSC-22/dip/bun 74.6 3.7 8.1E-05 31.2 3.1 32 148-179 13-44 (59)
76 KOG2113 Predicted RNA binding 73.9 1.4 2.9E-05 43.7 0.8 51 254-304 133-188 (394)
77 KOG0825 PHD Zn-finger protein 73.7 0.86 1.9E-05 49.7 -0.7 45 258-303 124-175 (1134)
78 smart00338 BRLZ basic region l 72.9 36 0.00077 25.2 8.8 32 144-175 28-59 (65)
79 PF13815 Dzip-like_N: Iguana/D 72.5 16 0.00034 30.5 6.7 66 90-172 52-117 (118)
80 PF13935 Ead_Ea22: Ead/Ea22-li 71.8 40 0.00086 29.0 9.2 65 93-162 70-139 (139)
81 KOG4673 Transcription factor T 71.6 64 0.0014 35.5 12.3 58 137-197 472-529 (961)
82 PF05290 Baculo_IE-1: Baculovi 71.5 1.8 3.9E-05 38.0 0.9 46 256-302 79-135 (140)
83 smart00744 RINGv The RING-vari 70.5 3 6.5E-05 29.9 1.7 36 259-295 1-49 (49)
84 TIGR03752 conj_TIGR03752 integ 69.9 49 0.0011 34.5 10.8 47 94-146 63-109 (472)
85 PF07111 HCR: Alpha helical co 69.7 1.6E+02 0.0036 32.3 14.9 100 97-197 94-210 (739)
86 KOG4797 Transcriptional regula 69.5 21 0.00045 30.5 6.7 34 147-180 65-98 (123)
87 KOG1103 Predicted coiled-coil 69.3 50 0.0011 33.7 10.4 39 91-129 136-184 (561)
88 PF10272 Tmpp129: Putative tra 69.3 3.9 8.4E-05 40.9 2.8 19 255-273 269-287 (358)
89 PF03854 zf-P11: P-11 zinc fin 68.7 2.3 5E-05 31.2 0.8 43 258-302 3-49 (50)
90 smart00787 Spc7 Spc7 kinetocho 68.4 72 0.0016 31.3 11.3 32 142-173 211-242 (312)
91 KOG4643 Uncharacterized coiled 68.1 2.2E+02 0.0049 32.7 15.9 76 105-180 370-453 (1195)
92 PRK04863 mukB cell division pr 67.6 2.3E+02 0.0051 33.6 16.8 8 209-216 424-431 (1486)
93 PRK10884 SH3 domain-containing 66.8 1.1E+02 0.0023 28.4 11.5 33 142-174 125-157 (206)
94 KOG0971 Microtubule-associated 66.6 1.2E+02 0.0026 34.5 13.4 95 95-196 401-502 (1243)
95 COG2433 Uncharacterized conser 65.7 52 0.0011 35.4 10.2 27 142-168 474-500 (652)
96 PF00038 Filament: Intermediat 65.3 1.2E+02 0.0027 28.5 12.8 83 93-181 11-93 (312)
97 PF08702 Fib_alpha: Fibrinogen 65.2 95 0.0021 27.1 11.1 49 94-146 22-72 (146)
98 smart00502 BBC B-Box C-termina 64.8 68 0.0015 25.3 11.4 53 96-152 30-82 (127)
99 PF15254 CCDC14: Coiled-coil d 64.6 73 0.0016 35.3 11.2 59 112-170 494-557 (861)
100 PF05121 GvpK: Gas vesicle pro 64.5 47 0.001 27.2 7.6 38 134-171 27-67 (88)
101 KOG4571 Activating transcripti 64.3 30 0.00065 33.9 7.6 31 149-179 255-285 (294)
102 COG3064 TolA Membrane protein 63.7 1.7E+02 0.0037 29.5 16.4 21 23-43 37-57 (387)
103 PF04380 BMFP: Membrane fusoge 63.5 54 0.0012 25.7 7.7 22 148-169 56-77 (79)
104 KOG4657 Uncharacterized conser 61.9 1.5E+02 0.0033 28.4 15.5 100 92-193 17-116 (246)
105 PF13210 DUF4018: Domain of un 61.3 1.9 4.1E-05 39.1 -0.9 17 17-33 132-148 (192)
106 PF14193 DUF4315: Domain of un 60.5 41 0.00089 27.1 6.6 31 143-173 2-32 (83)
107 KOG0717 Molecular chaperone (D 60.3 2E+02 0.0043 30.3 12.9 10 258-267 293-302 (508)
108 PRK11637 AmiB activator; Provi 59.6 2E+02 0.0042 28.9 13.8 28 143-170 90-117 (428)
109 smart00338 BRLZ basic region l 59.3 69 0.0015 23.6 7.6 36 157-192 27-62 (65)
110 PF11544 Spc42p: Spindle pole 58.4 84 0.0018 25.1 7.9 34 141-174 11-44 (76)
111 PF04859 DUF641: Plant protein 58.0 64 0.0014 28.0 7.9 69 95-168 50-127 (131)
112 KOG2391 Vacuolar sorting prote 57.8 1.2E+02 0.0026 30.7 10.6 29 146-174 239-267 (365)
113 KOG0288 WD40 repeat protein Ti 57.7 2.4E+02 0.0052 29.3 13.7 64 98-165 3-71 (459)
114 PF15070 GOLGA2L5: Putative go 57.4 2.8E+02 0.006 29.9 14.8 86 98-186 164-257 (617)
115 PF15397 DUF4618: Domain of un 57.2 1.9E+02 0.0041 28.0 12.9 80 101-180 135-224 (258)
116 KOG0612 Rho-associated, coiled 57.1 2E+02 0.0044 33.6 13.3 87 105-196 465-551 (1317)
117 PF04799 Fzo_mitofusin: fzo-li 56.9 96 0.0021 28.3 9.1 43 134-180 112-154 (171)
118 PRK00888 ftsB cell division pr 56.7 38 0.00082 28.0 6.0 36 142-177 27-62 (105)
119 PRK00888 ftsB cell division pr 56.6 39 0.00084 27.9 6.1 39 142-180 34-72 (105)
120 KOG3842 Adaptor protein Pellin 56.5 6 0.00013 39.4 1.5 46 254-299 338-414 (429)
121 COG5481 Uncharacterized conser 55.7 67 0.0014 24.8 6.6 48 117-169 9-58 (67)
122 PF09755 DUF2046: Uncharacteri 55.1 2.3E+02 0.0049 28.2 13.4 58 140-197 82-148 (310)
123 PF07412 Geminin: Geminin; In 54.8 72 0.0016 29.7 8.1 49 114-163 105-153 (200)
124 COG4985 ABC-type phosphate tra 54.4 62 0.0013 31.2 7.7 59 72-138 129-197 (289)
125 PRK15422 septal ring assembly 54.1 84 0.0018 25.3 7.3 32 150-181 40-71 (79)
126 PRK11448 hsdR type I restricti 54.1 55 0.0012 37.5 8.6 22 153-174 188-209 (1123)
127 PF07716 bZIP_2: Basic region 53.9 80 0.0017 22.6 7.9 28 144-171 27-54 (54)
128 PF11180 DUF2968: Protein of u 53.7 1.9E+02 0.0041 26.9 12.0 73 97-171 108-183 (192)
129 COG3074 Uncharacterized protei 53.4 43 0.00092 26.6 5.4 32 150-181 40-71 (79)
130 PHA03415 putative internal vir 53.3 57 0.0012 36.4 8.1 87 93-179 299-398 (1019)
131 PF13747 DUF4164: Domain of un 53.3 1.2E+02 0.0026 24.4 11.3 49 145-196 35-83 (89)
132 PLN02189 cellulose synthase 53.0 8.5 0.00018 43.4 2.1 44 256-299 33-87 (1040)
133 KOG0311 Predicted E3 ubiquitin 52.8 1.5 3.3E-05 43.9 -3.3 47 254-301 40-92 (381)
134 PF14570 zf-RING_4: RING/Ubox 52.7 5.7 0.00012 28.9 0.5 24 274-298 19-47 (48)
135 PF08112 ATP-synt_E_2: ATP syn 52.7 92 0.002 23.4 6.8 46 104-157 7-52 (56)
136 TIGR02680 conserved hypothetic 52.4 4.5E+02 0.0097 30.8 16.0 25 144-168 285-309 (1353)
137 PF06005 DUF904: Protein of un 51.9 1.1E+02 0.0024 23.8 9.8 25 156-180 39-63 (72)
138 KOG1002 Nucleotide excision re 51.8 4.3 9.4E-05 42.9 -0.3 44 254-298 533-585 (791)
139 PF12761 End3: Actin cytoskele 51.7 28 0.00062 32.2 4.9 50 146-198 93-142 (195)
140 PF00769 ERM: Ezrin/radixin/mo 51.3 66 0.0014 30.3 7.5 42 150-191 27-68 (246)
141 KOG0977 Nuclear envelope prote 50.9 3.2E+02 0.0069 29.2 12.9 69 112-180 113-187 (546)
142 PF09731 Mitofilin: Mitochondr 50.9 3.1E+02 0.0067 28.5 15.8 27 157-183 379-405 (582)
143 PRK11637 AmiB activator; Provi 50.0 2.8E+02 0.006 27.8 12.1 11 96-106 46-56 (428)
144 PF14916 CCDC92: Coiled-coil d 49.4 45 0.00098 25.4 4.9 31 133-163 12-42 (60)
145 TIGR01069 mutS2 MutS2 family p 49.3 4E+02 0.0086 29.4 14.1 9 38-46 406-414 (771)
146 KOG0297 TNF receptor-associate 49.3 8.8 0.00019 38.5 1.4 49 254-303 18-71 (391)
147 KOG3976 Mitochondrial F1F0-ATP 49.2 2.5E+02 0.0055 27.0 12.2 93 97-189 110-209 (247)
148 KOG3859 Septins (P-loop GTPase 48.7 1E+02 0.0022 30.9 8.4 55 117-171 320-377 (406)
149 PF09744 Jnk-SapK_ap_N: JNK_SA 48.1 2E+02 0.0044 25.6 11.0 74 94-180 40-113 (158)
150 PF12999 PRKCSH-like: Glucosid 47.9 92 0.002 28.4 7.5 26 148-173 145-170 (176)
151 cd00729 rubredoxin_SM Rubredox 47.5 6.8 0.00015 26.2 0.2 16 288-303 18-33 (34)
152 PF14775 NYD-SP28_assoc: Sperm 46.5 1E+02 0.0023 23.1 6.5 47 112-167 12-58 (60)
153 PF10367 Vps39_2: Vacuolar sor 46.4 14 0.00029 29.0 1.8 32 254-286 75-108 (109)
154 COG1196 Smc Chromosome segrega 46.4 3.9E+02 0.0084 30.6 13.7 52 136-187 731-782 (1163)
155 PRK10920 putative uroporphyrin 45.7 2.8E+02 0.0061 28.2 11.3 26 144-169 101-126 (390)
156 PF11500 Cut12: Spindle pole b 45.6 1.9E+02 0.0041 25.9 9.0 27 145-171 101-127 (152)
157 PF04642 DUF601: Protein of un 45.0 88 0.0019 30.5 7.2 94 86-184 177-287 (311)
158 KOG4398 Predicted coiled-coil 44.9 1E+02 0.0022 30.5 7.7 56 105-165 9-66 (359)
159 PF14738 PaaSYMP: Solute carri 43.8 1.8E+02 0.0038 25.9 8.6 53 104-156 94-146 (154)
160 KOG0249 LAR-interacting protei 43.6 1.9E+02 0.0042 32.1 10.2 85 110-198 168-258 (916)
161 KOG2008 BTK-associated SH3-dom 43.6 3.7E+02 0.0079 27.3 14.2 15 159-173 158-172 (426)
162 PF05700 BCAS2: Breast carcino 43.3 2.7E+02 0.0058 25.6 12.8 18 182-199 194-211 (221)
163 PF07956 DUF1690: Protein of U 43.2 1.6E+02 0.0035 25.7 8.1 12 90-101 9-20 (142)
164 PF05565 Sipho_Gp157: Siphovir 43.1 1.6E+02 0.0034 26.0 8.1 53 148-200 39-91 (162)
165 PF13874 Nup54: Nucleoporin co 43.1 2.1E+02 0.0046 24.5 8.9 20 150-169 73-92 (141)
166 PF04977 DivIC: Septum formati 42.8 86 0.0019 23.3 5.7 32 144-175 19-50 (80)
167 PF08614 ATG16: Autophagy prot 42.7 98 0.0021 27.7 6.9 35 142-176 109-143 (194)
168 PRK00409 recombination and DNA 42.4 4.8E+02 0.01 28.8 13.3 13 99-111 511-523 (782)
169 PF10083 DUF2321: Uncharacteri 42.4 9 0.0002 34.4 0.2 25 280-304 30-55 (158)
170 PRK14140 heat shock protein Gr 42.1 60 0.0013 29.8 5.5 40 141-180 36-75 (191)
171 KOG1029 Endocytic adaptor prot 42.0 3.4E+02 0.0074 30.7 11.8 73 99-172 340-415 (1118)
172 KOG3119 Basic region leucine z 41.9 1.4E+02 0.0031 28.5 8.2 22 159-180 218-239 (269)
173 PF07888 CALCOCO1: Calcium bin 41.7 4.7E+02 0.01 28.0 16.2 15 96-110 177-191 (546)
174 PF08654 DASH_Dad2: DASH compl 41.7 1.3E+02 0.0028 25.0 6.9 48 141-191 3-53 (103)
175 PF06005 DUF904: Protein of un 41.6 1.7E+02 0.0037 22.8 10.3 51 143-196 19-69 (72)
176 PF15070 GOLGA2L5: Putative go 41.5 2.2E+02 0.0047 30.7 10.3 43 142-184 101-143 (617)
177 COG2960 Uncharacterized protei 41.3 1.9E+02 0.004 24.5 7.7 16 153-168 70-85 (103)
178 COG3937 Uncharacterized conser 41.2 86 0.0019 26.6 5.8 15 123-137 64-78 (108)
179 PF10186 Atg14: UV radiation r 41.1 2.9E+02 0.0062 25.3 16.5 8 104-111 41-48 (302)
180 cd00179 SynN Syntaxin N-termin 40.9 2.1E+02 0.0046 23.8 11.9 82 112-197 13-101 (151)
181 COG4306 Uncharacterized protei 40.9 11 0.00023 33.1 0.5 25 280-304 30-55 (160)
182 COG5019 CDC3 Septin family pro 40.8 2.2E+02 0.0048 29.0 9.6 91 72-168 278-368 (373)
183 PRK10884 SH3 domain-containing 40.5 3E+02 0.0065 25.4 12.3 33 142-174 118-150 (206)
184 TIGR01562 FdhE formate dehydro 40.1 1.2E+02 0.0027 29.7 7.7 43 256-298 183-234 (305)
185 smart00503 SynN Syntaxin N-ter 39.8 1.9E+02 0.0041 22.9 11.0 83 112-198 15-103 (117)
186 COG3120 Uncharacterized protei 39.4 1.7E+02 0.0037 25.8 7.5 15 115-129 68-82 (149)
187 PF03962 Mnd1: Mnd1 family; I 39.1 3E+02 0.0064 24.9 11.4 54 144-200 98-151 (188)
188 PF13863 DUF4200: Domain of un 39.0 2.1E+02 0.0046 23.3 11.8 35 142-176 74-108 (126)
189 PRK13729 conjugal transfer pil 38.7 1.1E+02 0.0023 32.1 7.3 28 148-175 89-116 (475)
190 PRK10963 hypothetical protein; 38.4 1E+02 0.0022 28.4 6.5 8 269-276 171-178 (223)
191 COG2433 Uncharacterized conser 38.0 1.6E+02 0.0034 31.9 8.4 54 144-197 438-494 (652)
192 PF12718 Tropomyosin_1: Tropom 37.3 2.8E+02 0.006 24.1 13.5 61 134-195 73-133 (143)
193 COG4717 Uncharacterized conser 37.2 6.8E+02 0.015 28.6 13.5 100 86-198 150-259 (984)
194 COG4942 Membrane-bound metallo 36.7 5E+02 0.011 26.9 11.7 77 118-199 33-109 (420)
195 PRK05892 nucleoside diphosphat 36.6 1.3E+02 0.0029 26.5 6.7 17 150-166 55-71 (158)
196 PF05983 Med7: MED7 protein; 36.1 2.3E+02 0.0049 25.2 8.1 49 115-166 114-162 (162)
197 KOG1144 Translation initiation 35.7 4.1E+02 0.0088 30.1 11.2 33 97-129 221-253 (1064)
198 KOG0980 Actin-binding protein 35.5 2.9E+02 0.0063 31.3 10.2 12 129-140 363-374 (980)
199 KOG4460 Nuclear pore complex, 35.5 6.2E+02 0.013 27.6 13.4 140 16-167 480-627 (741)
200 PF08549 SWI-SNF_Ssr4: Fungal 35.3 67 0.0015 34.9 5.3 27 140-166 369-395 (669)
201 PRK14143 heat shock protein Gr 35.0 2E+02 0.0043 27.4 7.9 22 104-126 67-88 (238)
202 PF08202 MIS13: Mis12-Mtw1 pro 35.0 47 0.001 32.1 3.9 26 155-180 163-188 (301)
203 PF08614 ATG16: Autophagy prot 34.8 2.7E+02 0.0059 24.9 8.5 21 154-174 156-176 (194)
204 COG5219 Uncharacterized conser 34.8 13 0.00027 42.1 -0.0 19 163-181 1321-1339(1525)
205 KOG4739 Uncharacterized protei 34.5 3E+02 0.0065 26.3 9.0 7 94-100 73-79 (233)
206 KOG2483 Upstream transcription 34.3 1E+02 0.0022 29.2 5.9 31 142-172 112-142 (232)
207 PF10752 DUF2533: Protein of u 34.0 2.5E+02 0.0054 22.9 7.1 58 90-163 2-59 (84)
208 PRK10698 phage shock protein P 34.0 3.9E+02 0.0084 24.8 10.9 75 99-174 108-184 (222)
209 COG3096 MukB Uncharacterized p 33.7 7.7E+02 0.017 28.2 14.5 68 53-127 802-872 (1480)
210 PRK13182 racA polar chromosome 33.6 3E+02 0.0065 24.9 8.5 34 135-168 111-144 (175)
211 PF06785 UPF0242: Uncharacteri 33.5 5.1E+02 0.011 26.4 10.7 80 117-198 90-176 (401)
212 PF05008 V-SNARE: Vesicle tran 33.5 2.1E+02 0.0045 21.5 8.6 30 146-175 22-51 (79)
213 KOG3564 GTPase-activating prot 33.4 4.2E+02 0.0091 28.3 10.4 53 144-196 51-103 (604)
214 TIGR01069 mutS2 MutS2 family p 33.4 6.9E+02 0.015 27.5 14.4 10 101-110 508-517 (771)
215 KOG0709 CREB/ATF family transc 33.3 96 0.0021 32.4 5.9 34 155-188 285-318 (472)
216 PRK02224 chromosome segregatio 33.0 6.7E+02 0.015 27.3 16.0 46 144-189 525-570 (880)
217 KOG4369 RTK signaling protein 32.8 22 0.00048 41.2 1.4 47 25-86 1836-1882(2131)
218 PRK05431 seryl-tRNA synthetase 32.7 3.7E+02 0.0081 27.3 10.0 15 185-199 88-102 (425)
219 PF14235 DUF4337: Domain of un 32.6 3.5E+02 0.0077 23.9 10.4 75 99-174 31-105 (157)
220 PF10217 DUF2039: Uncharacteri 32.0 13 0.00029 30.5 -0.3 40 254-298 52-91 (92)
221 KOG0241 Kinesin-like protein [ 31.9 2.1E+02 0.0046 33.1 8.4 42 133-174 380-422 (1714)
222 PRK00409 recombination and DNA 31.9 5.9E+02 0.013 28.1 12.0 7 38-44 411-417 (782)
223 PF11505 DUF3216: Protein of u 31.4 2E+02 0.0044 23.9 6.4 58 104-167 21-86 (97)
224 PRK06975 bifunctional uroporph 31.3 4.6E+02 0.01 28.2 10.9 75 100-176 345-419 (656)
225 PF11793 FANCL_C: FANCL C-term 31.3 15 0.00033 28.0 -0.1 13 289-301 56-68 (70)
226 PF14257 DUF4349: Domain of un 31.2 1.9E+02 0.004 26.9 7.1 24 142-165 169-192 (262)
227 KOG2068 MOT2 transcription fac 31.1 31 0.00067 34.3 1.9 45 257-302 249-301 (327)
228 TIGR02680 conserved hypothetic 31.1 9E+02 0.02 28.5 13.8 69 128-196 255-323 (1353)
229 PRK14714 DNA polymerase II lar 31.0 35 0.00075 39.6 2.5 47 257-304 667-725 (1337)
230 KOG4421 Uncharacterized conser 30.8 2.8E+02 0.006 28.8 8.5 51 108-159 126-176 (637)
231 KOG4807 F-actin binding protei 30.8 6.5E+02 0.014 26.4 12.7 89 99-190 365-459 (593)
232 PF05266 DUF724: Protein of un 30.6 4.2E+02 0.0091 24.2 11.4 48 144-198 126-173 (190)
233 PF04340 DUF484: Protein of un 30.5 1.7E+02 0.0036 26.7 6.5 31 153-190 51-81 (225)
234 PF10168 Nup88: Nuclear pore c 30.3 7.7E+02 0.017 27.1 14.1 98 87-193 529-627 (717)
235 PF09728 Taxilin: Myosin-like 29.8 5.4E+02 0.012 25.1 14.8 101 94-199 78-182 (309)
236 PF14265 DUF4355: Domain of un 29.7 3.2E+02 0.0069 22.5 8.8 18 105-122 12-29 (125)
237 PRK09039 hypothetical protein; 29.6 5.6E+02 0.012 25.3 15.2 53 147-199 135-187 (343)
238 PLN02436 cellulose synthase A 29.6 34 0.00074 38.9 2.2 44 256-299 35-89 (1094)
239 PF04977 DivIC: Septum formati 29.6 1.8E+02 0.004 21.4 5.6 39 142-180 24-62 (80)
240 PF08172 CASP_C: CASP C termin 29.6 1.6E+02 0.0035 28.0 6.4 41 152-199 89-129 (248)
241 KOG1916 Nuclear protein, conta 29.5 9.5E+02 0.021 27.9 14.5 27 92-118 878-904 (1283)
242 PF15290 Syntaphilin: Golgi-lo 29.5 5.7E+02 0.012 25.3 10.6 47 119-169 117-169 (305)
243 KOG4809 Rab6 GTPase-interactin 29.4 7.6E+02 0.017 26.8 12.7 93 104-196 331-454 (654)
244 PRK05097 Ter macrodomain organ 29.4 80 0.0017 28.1 4.0 31 99-129 47-82 (150)
245 KOG1029 Endocytic adaptor prot 29.4 8.5E+02 0.018 27.8 12.3 18 148-165 443-460 (1118)
246 PF08926 DUF1908: Domain of un 29.3 2.3E+02 0.0049 27.9 7.3 43 86-128 151-207 (282)
247 KOG4005 Transcription factor X 29.2 4.8E+02 0.01 25.4 9.4 29 151-179 92-120 (292)
248 PF03961 DUF342: Protein of un 28.7 4.2E+02 0.0091 26.8 9.6 24 147-170 373-396 (451)
249 TIGR00414 serS seryl-tRNA synt 28.6 3.3E+02 0.0072 27.5 8.8 19 151-169 71-89 (418)
250 COG4357 Zinc finger domain con 28.6 32 0.0007 28.8 1.3 44 259-302 37-94 (105)
251 PRK14127 cell division protein 28.5 1.2E+02 0.0027 25.5 4.9 28 151-178 39-66 (109)
252 KOG4466 Component of histone d 28.5 5.9E+02 0.013 25.2 10.9 19 156-174 116-134 (291)
253 PF06818 Fez1: Fez1; InterPro 28.4 3.7E+02 0.0081 25.1 8.4 61 105-166 132-201 (202)
254 PRK06342 transcription elongat 28.4 1E+02 0.0022 27.4 4.5 12 99-110 36-47 (160)
255 KOG4343 bZIP transcription fac 28.1 1.4E+02 0.0031 31.9 6.2 53 116-175 290-342 (655)
256 PRK14139 heat shock protein Gr 28.1 1.1E+02 0.0023 28.1 4.7 34 147-180 37-70 (185)
257 PF12325 TMF_TATA_bd: TATA ele 28.0 3.8E+02 0.0082 22.8 13.1 97 88-198 14-110 (120)
258 cd00730 rubredoxin Rubredoxin; 27.8 26 0.00056 25.5 0.6 12 255-266 32-43 (50)
259 KOG0804 Cytoplasmic Zn-finger 27.5 7.5E+02 0.016 26.1 14.8 42 156-197 407-448 (493)
260 KOG0963 Transcription factor/C 27.5 8.4E+02 0.018 26.6 13.7 32 160-191 179-210 (629)
261 PF10186 Atg14: UV radiation r 27.4 4.8E+02 0.011 23.8 16.7 40 160-199 116-155 (302)
262 COG3159 Uncharacterized protei 27.3 2.1E+02 0.0046 27.0 6.6 58 93-169 7-65 (218)
263 KOG2129 Uncharacterized conser 27.0 6.1E+02 0.013 26.7 10.2 31 109-139 257-287 (552)
264 PHA01750 hypothetical protein 27.0 2.5E+02 0.0055 22.1 5.9 37 132-168 32-68 (75)
265 smart00806 AIP3 Actin interact 26.9 60 0.0013 33.4 3.2 31 133-165 373-403 (426)
266 TIGR01461 greB transcription e 26.9 1.9E+02 0.0041 25.4 6.0 18 150-167 46-63 (156)
267 PF04849 HAP1_N: HAP1 N-termin 26.8 3.5E+02 0.0076 26.8 8.3 21 92-112 50-70 (306)
268 KOG1940 Zn-finger protein [Gen 26.7 14 0.00031 35.7 -1.1 45 256-302 157-209 (276)
269 cd00350 rubredoxin_like Rubred 26.6 28 0.00062 22.8 0.6 16 288-303 17-32 (33)
270 PF14282 FlxA: FlxA-like prote 26.5 3.5E+02 0.0075 22.2 7.1 52 148-199 18-73 (106)
271 KOG1941 Acetylcholine receptor 26.4 4.7E+02 0.01 27.3 9.2 151 96-297 252-414 (518)
272 PF08599 Nbs1_C: DNA damage re 26.3 76 0.0017 24.6 2.9 23 151-174 28-50 (65)
273 KOG4218 Nuclear hormone recept 26.2 29 0.00063 35.2 0.8 25 258-286 16-40 (475)
274 PRK14157 heat shock protein Gr 25.9 1.5E+02 0.0032 28.2 5.3 15 112-126 84-98 (227)
275 PF04949 Transcrip_act: Transc 25.9 5E+02 0.011 23.5 8.4 11 142-152 66-76 (159)
276 PF12999 PRKCSH-like: Glucosid 25.7 3.7E+02 0.0081 24.5 7.7 17 107-123 127-143 (176)
277 KOG4661 Hsp27-ERE-TATA-binding 25.6 2.8E+02 0.0061 30.2 7.8 10 134-143 641-650 (940)
278 PF11944 DUF3461: Protein of u 25.3 2.3E+02 0.0051 24.6 6.0 54 94-153 71-124 (125)
279 COG5175 MOT2 Transcriptional r 25.2 34 0.00073 34.6 1.1 42 259-301 16-66 (480)
280 cd08313 Death_TNFR1 Death doma 25.2 1.1E+02 0.0025 24.2 3.9 54 140-196 17-70 (80)
281 PF07800 DUF1644: Protein of u 25.1 38 0.00083 30.6 1.3 18 287-304 79-96 (162)
282 PF05529 Bap31: B-cell recepto 24.7 4.9E+02 0.011 23.0 9.4 11 185-195 176-186 (192)
283 PF12180 EABR: TSG101 and ALIX 24.7 2.4E+02 0.0053 19.5 5.7 33 163-195 2-34 (35)
284 KOG3119 Basic region leucine z 24.6 3.2E+02 0.0069 26.1 7.5 20 155-174 228-247 (269)
285 KOG0006 E3 ubiquitin-protein l 24.6 47 0.001 33.4 1.9 31 255-286 219-251 (446)
286 PRK00286 xseA exodeoxyribonucl 24.6 6.4E+02 0.014 25.2 10.0 23 173-195 368-390 (438)
287 PF04423 Rad50_zn_hook: Rad50 24.5 27 0.0006 25.0 0.2 10 290-299 22-31 (54)
288 PF04849 HAP1_N: HAP1 N-termin 24.4 7.1E+02 0.015 24.7 10.0 54 146-199 231-284 (306)
289 PF06657 Cep57_MT_bd: Centroso 24.4 3.5E+02 0.0077 21.2 7.6 22 88-109 8-29 (79)
290 PRK11448 hsdR type I restricti 24.1 3.2E+02 0.007 31.5 8.5 7 86-92 134-140 (1123)
291 KOG0298 DEAD box-containing he 24.0 7.8E+02 0.017 29.3 11.3 44 255-299 1151-1199(1394)
292 PHA02107 hypothetical protein 23.9 1.7E+02 0.0037 26.9 5.2 37 132-168 174-210 (216)
293 PF13166 AAA_13: AAA domain 23.8 8.7E+02 0.019 25.6 15.9 55 142-196 417-471 (712)
294 COG1592 Rubrerythrin [Energy p 23.7 5.5E+02 0.012 23.2 10.8 30 257-302 134-163 (166)
295 KOG2660 Locus-specific chromos 23.7 15 0.00032 36.6 -1.7 48 254-302 12-64 (331)
296 PF14569 zf-UDP: Zinc-binding 23.7 45 0.00098 26.9 1.3 44 256-299 8-62 (80)
297 PHA02825 LAP/PHD finger-like p 23.7 35 0.00077 30.8 0.8 45 254-299 5-59 (162)
298 PF04156 IncA: IncA protein; 23.6 5E+02 0.011 22.7 14.5 16 146-161 134-149 (191)
299 PF06273 eIF-4B: Plant specifi 23.4 84 0.0018 33.0 3.5 23 140-165 401-423 (492)
300 PF03528 Rabaptin: Rabaptin; 23.3 2.8E+02 0.006 23.4 6.0 45 128-172 53-102 (106)
301 PF14931 IFT20: Intraflagellar 23.2 4.7E+02 0.01 22.3 13.5 41 143-187 78-118 (120)
302 KOG1734 Predicted RING-contain 23.2 35 0.00075 33.5 0.7 46 254-300 221-282 (328)
303 TIGR01005 eps_transp_fam exopo 23.1 9.5E+02 0.021 25.8 14.1 30 169-198 375-404 (754)
304 PRK14148 heat shock protein Gr 23.1 2.1E+02 0.0045 26.4 5.7 9 93-101 16-24 (195)
305 KOG3799 Rab3 effector RIM1 and 23.1 33 0.00072 30.5 0.5 39 255-297 63-116 (169)
306 PF14662 CCDC155: Coiled-coil 23.0 6.2E+02 0.013 23.6 11.9 55 114-174 38-92 (193)
307 PF10571 UPF0547: Uncharacteri 23.0 37 0.00081 21.6 0.6 18 281-298 3-24 (26)
308 PF10481 CENP-F_N: Cenp-F N-te 23.0 7.5E+02 0.016 24.5 11.7 84 112-197 25-108 (307)
309 PF08317 Spc7: Spc7 kinetochor 22.7 7.1E+02 0.015 24.1 12.6 92 96-196 193-288 (325)
310 PLN02915 cellulose synthase A 22.7 50 0.0011 37.6 1.8 44 256-299 14-68 (1044)
311 PRK09413 IS2 repressor TnpA; R 22.5 2.1E+02 0.0045 23.7 5.1 30 151-180 73-102 (121)
312 PHA02571 a-gt.4 hypothetical p 22.4 4E+02 0.0086 22.7 6.7 39 113-158 15-53 (109)
313 TIGR01834 PHA_synth_III_E poly 22.4 4.8E+02 0.01 26.0 8.4 26 148-173 288-313 (320)
314 PRK14158 heat shock protein Gr 22.4 2.4E+02 0.0052 26.0 5.9 25 153-177 51-75 (194)
315 COG2919 Septum formation initi 22.2 4.6E+02 0.01 21.8 8.5 54 105-171 33-86 (117)
316 PRK14154 heat shock protein Gr 22.2 4.9E+02 0.011 24.3 8.0 23 148-170 79-101 (208)
317 PF05769 DUF837: Protein of un 22.2 5.9E+02 0.013 23.0 11.9 19 160-178 157-175 (181)
318 PF07334 IFP_35_N: Interferon- 22.1 1.4E+02 0.0029 23.9 3.7 24 151-174 2-25 (76)
319 PF14169 YdjO: Cold-inducible 22.1 52 0.0011 25.0 1.3 17 288-304 39-55 (59)
320 PRK06278 cobyrinic acid a,c-di 22.0 1.1E+02 0.0025 31.7 4.2 29 140-168 195-223 (476)
321 PRK14164 heat shock protein Gr 21.8 4.5E+02 0.0098 24.7 7.7 14 113-126 78-91 (218)
322 PF08432 Vfa1: AAA-ATPase Vps4 21.7 1.5E+02 0.0032 26.6 4.4 33 149-181 55-87 (182)
323 PF05178 Kri1: KRI1-like famil 21.5 1.6E+02 0.0034 24.4 4.1 29 146-174 10-39 (101)
324 PRK14162 heat shock protein Gr 21.5 2.5E+02 0.0054 25.9 5.8 24 154-177 51-74 (194)
325 PRK14159 heat shock protein Gr 21.4 2.1E+02 0.0045 26.0 5.2 12 149-160 51-62 (176)
326 TIGR00237 xseA exodeoxyribonuc 21.3 8.2E+02 0.018 24.9 10.1 90 72-161 275-386 (432)
327 KOG4445 Uncharacterized conser 21.3 24 0.00052 35.1 -0.8 44 255-299 113-186 (368)
328 PRK04863 mukB cell division pr 21.3 1.5E+03 0.032 27.3 16.9 28 148-175 368-395 (1486)
329 PF10779 XhlA: Haemolysin XhlA 21.2 3.7E+02 0.0081 20.3 7.0 17 151-167 8-24 (71)
330 PRK13677 hypothetical protein; 21.2 3E+02 0.0065 23.9 5.8 53 95-153 72-124 (125)
331 PF08271 TF_Zn_Ribbon: TFIIB z 21.2 61 0.0013 22.2 1.4 29 258-288 1-29 (43)
332 PF12861 zf-Apc11: Anaphase-pr 21.2 87 0.0019 25.4 2.5 41 258-299 33-82 (85)
333 PLN02638 cellulose synthase A 21.2 56 0.0012 37.3 1.8 44 256-299 16-70 (1079)
334 PLN02678 seryl-tRNA synthetase 21.1 7.4E+02 0.016 25.6 9.8 19 182-200 90-108 (448)
335 PF00170 bZIP_1: bZIP transcri 21.1 3.4E+02 0.0074 19.8 8.6 21 159-179 29-49 (64)
336 PF11221 Med21: Subunit 21 of 20.9 5.4E+02 0.012 22.1 8.7 18 94-111 73-90 (144)
337 TIGR01010 BexC_CtrB_KpsE polys 20.9 7.7E+02 0.017 23.9 11.4 12 160-171 218-229 (362)
338 PF13600 DUF4140: N-terminal d 20.8 1.9E+02 0.0041 23.0 4.4 32 144-175 72-103 (104)
339 COG3851 UhpB Signal transducti 20.8 4.2E+02 0.0091 27.6 7.7 21 144-164 274-294 (497)
340 PF11471 Sugarporin_N: Maltopo 20.7 1.7E+02 0.0037 22.1 3.8 25 156-180 32-56 (60)
341 PRK10803 tol-pal system protei 20.7 2.1E+02 0.0045 27.2 5.3 35 94-129 58-92 (263)
342 PF05335 DUF745: Protein of un 20.7 6.6E+02 0.014 23.0 13.7 84 95-180 68-175 (188)
343 PF02403 Seryl_tRNA_N: Seryl-t 20.6 4.4E+02 0.0096 21.0 10.1 84 92-181 11-99 (108)
344 PF02996 Prefoldin: Prefoldin 20.5 3.6E+02 0.0078 21.6 6.1 31 140-170 82-112 (120)
345 PF12737 Mating_C: C-terminal 20.5 1.1E+02 0.0023 31.5 3.6 24 148-171 394-417 (419)
346 KOG4796 RNA polymerase II elon 20.4 4.4E+02 0.0095 28.4 8.0 56 145-200 518-590 (604)
347 PRK00286 xseA exodeoxyribonucl 20.4 8.7E+02 0.019 24.3 15.7 31 127-157 312-342 (438)
348 PF14931 IFT20: Intraflagellar 20.4 5.4E+02 0.012 21.9 10.1 64 93-174 44-115 (120)
349 PHA03248 DNA packaging tegumen 20.3 3.5E+02 0.0077 29.1 7.4 49 117-165 53-108 (583)
350 PF10234 Cluap1: Clusterin-ass 20.1 8.1E+02 0.017 23.8 14.0 56 105-162 162-217 (267)
351 TIGR03185 DNA_S_dndD DNA sulfu 20.1 1.1E+03 0.023 25.2 13.8 102 93-199 394-498 (650)
352 PRK14147 heat shock protein Gr 20.1 2.4E+02 0.0052 25.3 5.4 19 149-167 46-64 (172)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-40 Score=298.05 Aligned_cols=193 Identities=37% Similarity=0.622 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
++++++++|..|||+|++.|.++||..+.+.++|+++.++.++|..+.++||+|++||++++++|++|+++++++++|+|
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHhhhccCCCCCcccccccchhhhhhhhhhhcccccCCCCCcccCCchhhHHhhhc
Q 021834 174 AWQRIAQENEAMVFSLNNSLEQLKEKAFCCFNNGVEDAESCCDVEEEETEQNRVIGIGFGESNNNYNYKGAAETEQEQRS 253 (307)
Q Consensus 174 ~Wq~~Ak~nEA~a~~Lr~~LqQv~~~~~~~~~~~~dDAeScc~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~~~~ 253 (307)
.|+++|++||+++++|+.+|+|++.+. ......++++.++|+....++. .+ .|.+. +. ..
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~-~~~~~~~~~~~~~~g~~~~~~~----------~s----~~~~~---~~--~~ 154 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQC-PASAPAEERGQKSCGDREADDG----------KS----SYVDP---SV--DN 154 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhc-ccccCchhhhccccCccccccc----------cc----cccch---hh--hh
Confidence 999999999999999999999999986 2222345677777666653321 00 01100 01 11
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEee
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALI 306 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l 306 (307)
......|+.|.+++++|+|+||+|+|+|..|...+.+||+|+.+++++++||+
T Consensus 155 ~~~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 155 FKRMRSCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred hhccccceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 22222399999999999999999999999999989999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.3e-12 Score=124.90 Aligned_cols=54 Identities=33% Similarity=0.802 Sum_probs=48.8
Q ss_pred ccccccccccccccccceEEeCCCCcccchhhHhcC----CCCCCCCccccceEEEee
Q 021834 253 STKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKASIEALI 306 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~sV~V~l 306 (307)
+..+...|+||++..+++++|||||+|+|..|+..+ ..|||||.+|...++|+.
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 345567999999999999999999999999999876 579999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.07 E-value=5e-11 Score=84.94 Aligned_cols=44 Identities=36% Similarity=0.886 Sum_probs=39.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC----CCCCCCCccccc
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKA 300 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 300 (307)
+..|.+|+++.++++++||+|.++|..|..++ ..||+||.+|+.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 35899999999999999999999999999887 899999999975
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.3e-11 Score=114.80 Aligned_cols=50 Identities=22% Similarity=0.602 Sum_probs=48.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEee
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALI 306 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l 306 (307)
...|+||++.+++.+||||+|++.|..|..+|..|||||..|...++||-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 78999999999999999999999999999999999999999999999984
No 5
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.9e-11 Score=89.85 Aligned_cols=50 Identities=30% Similarity=0.689 Sum_probs=45.4
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC-----CCCCCCCccccceEEEeeC
Q 021834 258 MVCKGCNSRDSCVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 258 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~sV~V~l~ 307 (307)
.+|.||++.+.+.+|.-|+|+|+|.+|+.++ ..||+||++|...|+.|-+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5899999999999999999999999999775 5799999999999887743
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.8e-09 Score=105.17 Aligned_cols=55 Identities=25% Similarity=0.638 Sum_probs=51.1
Q ss_pred ccccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEeeC
Q 021834 253 STKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l~ 307 (307)
+.+....|+||.+.+.+++|+||+|+|+|..|...+..||+||..|...+++|.+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 4567789999999999999999999999999999999999999999999988864
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00035 Score=73.94 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=41.5
Q ss_pred ccccccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 253 STKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
.-.....|++|.+++.++++.-|+|+ +|..|... .++||.|.+++..
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 45677899999999999999999999 79999864 5999999998854
No 8
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.73 E-value=8.9e-06 Score=81.07 Aligned_cols=49 Identities=37% Similarity=0.710 Sum_probs=42.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhc------CCCCCCCCccccceEEEee
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAF------LDTCPVCLTPKKASIEALI 306 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~------l~~CPvCR~~i~~sV~V~l 306 (307)
...|+||-++..+|-+-||+|+ +|..|-.. -.+||.||..|+++-.|.+
T Consensus 369 FeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred HHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 4689999999999999999999 79999754 3799999999999876653
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.51 E-value=7.2e-05 Score=68.23 Aligned_cols=45 Identities=24% Similarity=0.453 Sum_probs=38.2
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhc--------------------CCCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF--------------------LDTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~--------------------l~~CPvCR~~i~~ 300 (307)
.....|.||++...+.++.||+|. +|..|-.. ...||+||.+++.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 446799999999999999999997 79999842 2489999999975
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.46 E-value=0.0001 Score=69.19 Aligned_cols=52 Identities=29% Similarity=0.571 Sum_probs=40.0
Q ss_pred ccccccccccccccc--------eEEeCCCCcccchhhHhc----CCCCCCCCccccceEEEeeC
Q 021834 255 KMVMVCKGCNSRDSC--------VLFLPCRHLCACRACEAF----LDTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~--------vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V~l~ 307 (307)
.....|.||++.-.. .++.||+|. +|..|-.. ..+||+||.++...+...++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 345799999986322 466789997 89999843 47999999999988876543
No 11
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.41 E-value=9.6e-05 Score=51.48 Aligned_cols=37 Identities=27% Similarity=0.709 Sum_probs=31.2
Q ss_pred ccccccccc---cceEEeCCCCcccchhhHhcCC----CCCCCCc
Q 021834 259 VCKGCNSRD---SCVLFLPCRHLCACRACEAFLD----TCPVCLT 296 (307)
Q Consensus 259 ~C~iC~~~~---a~vlLlPCrHlclC~~C~~~l~----~CPvCR~ 296 (307)
.|.+|++.. ...++++|+|. +|..|...+. .||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 377888765 46889999999 7999999876 9999984
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.39 E-value=6.8e-05 Score=50.79 Aligned_cols=34 Identities=32% Similarity=0.755 Sum_probs=27.8
Q ss_pred cccccccccce-EEeCCCCcccchhhHhc----CCCCCCC
Q 021834 260 CKGCNSRDSCV-LFLPCRHLCACRACEAF----LDTCPVC 294 (307)
Q Consensus 260 C~iC~~~~a~v-lLlPCrHlclC~~C~~~----l~~CPvC 294 (307)
|.||++...+. +++||+|. +|..|..+ ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999988877 79999999 79999865 4799988
No 13
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.34 E-value=0.00017 Score=46.00 Aligned_cols=34 Identities=38% Similarity=0.888 Sum_probs=29.9
Q ss_pred cccccccccceEEeCCCCcccchhhHhc-----CCCCCCC
Q 021834 260 CKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVC 294 (307)
Q Consensus 260 C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvC 294 (307)
|.+|++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 79999863 4679987
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.07 E-value=0.00052 Score=45.27 Aligned_cols=39 Identities=41% Similarity=0.891 Sum_probs=30.3
Q ss_pred ccccccccc-cceEEeCCCCcccchhhHhc-----CCCCCCCCccc
Q 021834 259 VCKGCNSRD-SCVLFLPCRHLCACRACEAF-----LDTCPVCLTPK 298 (307)
Q Consensus 259 ~C~iC~~~~-a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i 298 (307)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999887 45555569999 79999863 45799999764
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.05 E-value=0.00021 Score=49.33 Aligned_cols=36 Identities=36% Similarity=0.718 Sum_probs=29.0
Q ss_pred ccccccccc---cceEEeCCCCcccchhhHhc----CCCCCCCC
Q 021834 259 VCKGCNSRD---SCVLFLPCRHLCACRACEAF----LDTCPVCL 295 (307)
Q Consensus 259 ~C~iC~~~~---a~vlLlPCrHlclC~~C~~~----l~~CPvCR 295 (307)
.|.||++.- ..++.+||+|. +|..|... -.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 689998754 58889999997 79999865 37999997
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00034 Score=65.27 Aligned_cols=49 Identities=22% Similarity=0.410 Sum_probs=40.7
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc-------CCCCCCCCccccceEE
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-------LDTCPVCLTPKKASIE 303 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-------l~~CPvCR~~i~~sV~ 303 (307)
......|-||++...+-|+-+|+|| +|..|--+ -+.||||++.|+..-.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 3456799999999999999999999 79999743 3788999998865433
No 17
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00035 Score=67.06 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=41.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccceEEEee
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASIEALI 306 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V~l 306 (307)
.....|.+|++...+--..||||+ +|..|-.. -..||+||.....+-.|.|
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVICL 291 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceeee
Confidence 445899999999998889999999 69999643 4689999999887665543
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.68 E-value=0.00077 Score=45.49 Aligned_cols=34 Identities=35% Similarity=0.790 Sum_probs=29.0
Q ss_pred cccccccccceE-EeCCCCcccchhhHhc------CCCCCCC
Q 021834 260 CKGCNSRDSCVL-FLPCRHLCACRACEAF------LDTCPVC 294 (307)
Q Consensus 260 C~iC~~~~a~vl-LlPCrHlclC~~C~~~------l~~CPvC 294 (307)
|.||.+.....+ ++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888777 9999999 89999865 3579987
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00088 Score=60.63 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=36.8
Q ss_pred ccccccccccccceE--EeCCCCcccchhhHhc----CCCCCCCCcccc--ceEEEee
Q 021834 257 VMVCKGCNSRDSCVL--FLPCRHLCACRACEAF----LDTCPVCLTPKK--ASIEALI 306 (307)
Q Consensus 257 ~~~C~iC~~~~a~vl--LlPCrHlclC~~C~~~----l~~CPvCR~~i~--~sV~V~l 306 (307)
.-.|.||++...-.+ ---|||+ +|+.|... ..+||+|+..|+ ..+.|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 468999998765444 3689999 79999976 389999996655 4455554
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=96.47 E-value=0.0011 Score=62.08 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=38.1
Q ss_pred ccccccccccccccc---------cceEEeCCCCcccchhhHhc----------CCCCCCCCccccceEE
Q 021834 253 STKMVMVCKGCNSRD---------SCVLFLPCRHLCACRACEAF----------LDTCPVCLTPKKASIE 303 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~---------a~vlLlPCrHlclC~~C~~~----------l~~CPvCR~~i~~sV~ 303 (307)
..+....|.||++.. .--+|.||.|. +|..|-.. ...||+||..++..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 356678999999863 13588899999 89999753 2359999999886554
No 21
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.47 E-value=0.0013 Score=49.02 Aligned_cols=43 Identities=33% Similarity=0.628 Sum_probs=36.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHh--cCCCCCCCCccccc
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEA--FLDTCPVCLTPKKA 300 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~--~l~~CPvCR~~i~~ 300 (307)
.-.|..|......-+++||+|++ |..|.. +.+.||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 45799999998888999999994 999985 46899999998864
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.25 E-value=0.002 Score=64.60 Aligned_cols=46 Identities=20% Similarity=0.519 Sum_probs=38.6
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
......|.||.+.-..-++.||+|. +|..|... ...||+|+.++..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4567899999998888888999999 69999864 3579999998764
No 23
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0021 Score=56.13 Aligned_cols=42 Identities=33% Similarity=0.647 Sum_probs=35.8
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC----CCCCCCCc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL----DTCPVCLT 296 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~ 296 (307)
......|.||++.-..-.++||+|. +|..|.... -.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 4466899999998877799999999 699999774 58999993
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0034 Score=64.42 Aligned_cols=43 Identities=26% Similarity=0.535 Sum_probs=38.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhc---------CCCCCCCCccccc
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAF---------LDTCPVCLTPKKA 300 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~---------l~~CPvCR~~i~~ 300 (307)
...|+||++.+...++.-|||. +|-.|--. ...||+|+..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999999899999 69999643 3799999999987
No 25
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.96 E-value=0.0035 Score=62.09 Aligned_cols=47 Identities=32% Similarity=0.714 Sum_probs=40.5
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC------CCCCCCCccccceE
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL------DTCPVCLTPKKASI 302 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l------~~CPvCR~~i~~sV 302 (307)
...+.|.||-..-.-+.++||+|. +|-.|+-++ +.||+||+.-...+
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 456899999999999999999999 699999874 79999998765544
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.57 E-value=0.0071 Score=42.10 Aligned_cols=34 Identities=38% Similarity=0.774 Sum_probs=25.3
Q ss_pred cccccccccceEEeCCCCcccchhhHhcC--------CCCCCC
Q 021834 260 CKGCNSRDSCVLFLPCRHLCACRACEAFL--------DTCPVC 294 (307)
Q Consensus 260 C~iC~~~~a~vlLlPCrHlclC~~C~~~l--------~~CPvC 294 (307)
|.||++--.+=+.+||+|. +|..|-.+. -.||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999999899999999 699998653 369987
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.53 E-value=0.011 Score=42.94 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=34.7
Q ss_pred cccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 258 MVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 258 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
..|.+|++--.+=++.||+|. +|..|-.. -.+||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 479999988877888999987 69999864 3689999998843
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.0075 Score=57.54 Aligned_cols=44 Identities=25% Similarity=0.552 Sum_probs=36.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhc------CCCCCCCCccccc
Q 021834 256 MVMVCKGCNSRDSCVLFLPCRHLCACRACEAF------LDTCPVCLTPKKA 300 (307)
Q Consensus 256 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~------l~~CPvCR~~i~~ 300 (307)
.+..|.+|.+..-.-...||+|+ +|-.|--. ...||+||+...-
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhccc
Confidence 35789999999999999999999 68888654 4679999987543
No 29
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.0099 Score=59.12 Aligned_cols=45 Identities=27% Similarity=0.561 Sum_probs=37.2
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhc-C---CCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-L---DTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-l---~~CPvCR~~i~~ 300 (307)
.++..|+||+..+++.+|-||.|. .|..|-.. + +.|=.|.+.+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 456799999999999999999999 59999865 2 677777776653
No 30
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.028 Score=54.95 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=34.2
Q ss_pred ccccccccccccc---cceEEeCCCCcccchhhHhc-----CCCCCCCCcccc
Q 021834 255 KMVMVCKGCNSRD---SCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKK 299 (307)
Q Consensus 255 ~~~~~C~iC~~~~---a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~ 299 (307)
.....|.||++.- --++.+||.|. +=..|-.+ -..||+||+++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 3447999999743 34788999998 56788765 279999999986
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.38 E-value=0.016 Score=40.85 Aligned_cols=27 Identities=37% Similarity=0.838 Sum_probs=16.5
Q ss_pred cccccccccc----eEEeCCCCcccchhhHhcC
Q 021834 260 CKGCNSRDSC----VLFLPCRHLCACRACEAFL 288 (307)
Q Consensus 260 C~iC~~~~a~----vlLlPCrHlclC~~C~~~l 288 (307)
|.||++ ..+ -++|||+|. +|+.|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788888 555 577899999 699998765
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=93.91 E-value=0.026 Score=55.02 Aligned_cols=43 Identities=28% Similarity=0.537 Sum_probs=37.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCcccc
Q 021834 256 MVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~ 299 (307)
....|.||.+.-+--++-||+|- +|.-|-.. -..||+||.+.-
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 34689999999999999999999 79999876 379999998753
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.024 Score=58.47 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=38.1
Q ss_pred ccccccccccccccccc-----eEEeCCCCcccchhhHhc----CCCCCCCCcccc
Q 021834 253 STKMVMVCKGCNSRDSC-----VLFLPCRHLCACRACEAF----LDTCPVCLTPKK 299 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~-----vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~ 299 (307)
.......|.||.+.-.. ...+||+|. ++..|-.. ..+||+||..+.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 34557899999998887 799999999 69999864 589999999443
No 34
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.066 Score=53.04 Aligned_cols=43 Identities=26% Similarity=0.508 Sum_probs=31.1
Q ss_pred cccccccccc---cceEEeCCCCcccchhhHhc-----CCCCCCCCccccce
Q 021834 258 MVCKGCNSRD---SCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKAS 301 (307)
Q Consensus 258 ~~C~iC~~~~---a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~s 301 (307)
..|.||++.- ..+.+|||.|-.-| .|-+. -+.||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCC
Confidence 6999998743 46677999999644 46533 25699999877654
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=92.12 E-value=0.043 Score=54.42 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=38.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhcC----CCCCCCCccccce
Q 021834 256 MVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKAS 301 (307)
Q Consensus 256 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~s 301 (307)
....|-||++=-.--++.||.|. +|.-|-... ..||.|+.+++.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 45799999999988999999999 699998763 7999999887654
No 36
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.1 Score=50.32 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=37.3
Q ss_pred cccccccccccccccc-ceEEeCCCCcccchhhHhcC------CCCCCCCcccc
Q 021834 253 STKMVMVCKGCNSRDS-CVLFLPCRHLCACRACEAFL------DTCPVCLTPKK 299 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a-~vlLlPCrHlclC~~C~~~l------~~CPvCR~~i~ 299 (307)
..+...+|++|.+.+. -.+..||+|. .|..|...- -+||.|..+..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 3566789999999886 6777889996 699998652 38999988765
No 37
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=91.61 E-value=0.14 Score=39.47 Aligned_cols=36 Identities=28% Similarity=0.658 Sum_probs=25.6
Q ss_pred ccccccccc-------------cceEEeCCCCcccchhhHhc----CCCCCCCC
Q 021834 259 VCKGCNSRD-------------SCVLFLPCRHLCACRACEAF----LDTCPVCL 295 (307)
Q Consensus 259 ~C~iC~~~~-------------a~vlLlPCrHlclC~~C~~~----l~~CPvCR 295 (307)
.|.||++.- ..+++.||+|. +-..|-.. -.+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 477777643 45677899999 68888753 47999998
No 38
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=90.90 E-value=0.21 Score=49.28 Aligned_cols=48 Identities=4% Similarity=-0.079 Sum_probs=42.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcC--CCCCCCCccccceEEE
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAFL--DTCPVCLTPKKASIEA 304 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l--~~CPvCR~~i~~sV~V 304 (307)
.+.|.+|.....+.++.||+|..+|..|+..- .+||+|.......|.|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 57999999999999999999999999999742 7999999887777665
No 39
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=0.15 Score=51.29 Aligned_cols=44 Identities=30% Similarity=0.547 Sum_probs=31.1
Q ss_pred cccccccccccccc-------------cceEEeCCCCcccchhhHh----cCCCCCCCCccc
Q 021834 254 TKMVMVCKGCNSRD-------------SCVLFLPCRHLCACRACEA----FLDTCPVCLTPK 298 (307)
Q Consensus 254 ~~~~~~C~iC~~~~-------------a~vlLlPCrHlclC~~C~~----~l~~CPvCR~~i 298 (307)
...+..|.||++.- ..-.=+||||. +=-.|-+ +-.+||+||.|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 46678999999961 11234899997 4445543 358999999983
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.65 E-value=18 Score=34.05 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHhhhHHHHHHHHHH----HHHHHH
Q 021834 101 KQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEI--KTSALLRQKDEEIAKATNRTMELEILLKKL----EMESQA 174 (307)
Q Consensus 101 qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~--~~~~rLReKe~Eier~~rrn~ELeErlrqL----~~E~Q~ 174 (307)
+-+.|++.+.+.+.+.++........ .+-.+=+. ...+.+.....+|+.+..+|..|+.+|+.+ ..+.+.
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~----~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSE----ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccccccccccccccc----ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 44455666666666665555443222 22222222 345668888999999999999999999765 566677
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHH
Q 021834 175 WQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 175 Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
|+.....-|+....|+..+++.+
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHH
Confidence 88888888888888888776544
No 41
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.44 E-value=15 Score=33.56 Aligned_cols=93 Identities=25% Similarity=0.339 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHH--------HH
Q 021834 97 LQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLK--------KL 168 (307)
Q Consensus 97 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlr--------qL 168 (307)
..++....++.++|..|.+.+|.-=+..|+- ..-+..+.++||++++||.++.-.+..|..-+. .|
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~------q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKS------QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 4567777888888999999998776666652 334566779999999999998766665544222 23
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 169 EMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 169 ~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
.-+-..-...+..++-.+..|..+|+-
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555666666666666654
No 42
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=89.07 E-value=18 Score=33.68 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhHHHHHHHHhhhHHHHHH
Q 021834 103 RQEIDHYIISQNERLR---LVLQEQRKQQLEVLLKKIEIKTSALLR---------------QKDEEIAKATNRTMELEIL 164 (307)
Q Consensus 103 ~~EID~~i~~q~ErLR---~~L~E~r~Rh~r~ll~avE~~~~~rLR---------------eKe~Eier~~rrn~ELeEr 164 (307)
+.-=.++|.+++|-.+ +-|+|--.||.. +.|++.+++.|.+ .-++||-.+++|+.|||-|
T Consensus 67 rEkEErILaLEad~~kWEqkYLEEs~mrq~a--~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~R 144 (205)
T PF12240_consen 67 REKEERILALEADMTKWEQKYLEESAMRQFA--MDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENR 144 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHH
Confidence 3334588999988776 348888888863 3455566666666 2378999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 021834 165 LKKLEMESQAWQRIAQENEAMVFSLNNSLE 194 (307)
Q Consensus 165 lrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~Lq 194 (307)
||.|.++ -.+.+||+..|+....
T Consensus 145 IK~Lhaq-------I~EKDAmIkVLQqrs~ 167 (205)
T PF12240_consen 145 IKALHAQ-------IAEKDAMIKVLQQRSR 167 (205)
T ss_pred HHHHHHH-------HHHHHHHHHHHHhhcc
Confidence 9999875 3567899998766543
No 43
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.85 E-value=0.44 Score=45.71 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=37.5
Q ss_pred cccccccccccc----ccceEEeCCCCcccchhhHhcC----CCCCCCCccccce
Q 021834 255 KMVMVCKGCNSR----DSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKAS 301 (307)
Q Consensus 255 ~~~~~C~iC~~~----~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~s 301 (307)
...-.|.+|.+. ..+++|-||+|.+ |..|..++ ..||||-.+.+..
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCccc
Confidence 356799999973 4588999999995 99999876 7999998887654
No 44
>PF04641 Rtf2: Rtf2 RING-finger
Probab=87.95 E-value=0.49 Score=44.53 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=37.6
Q ss_pred cccccccccccc----cccceEEeCCCCcccchhhHhcCC---CCCCCCccccce
Q 021834 254 TKMVMVCKGCNS----RDSCVLFLPCRHLCACRACEAFLD---TCPVCLTPKKAS 301 (307)
Q Consensus 254 ~~~~~~C~iC~~----~~a~vlLlPCrHlclC~~C~~~l~---~CPvCR~~i~~s 301 (307)
......|+|... +..-|+|.||||. ++..+...+. .||+|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 455679999874 4468889999997 6888888776 899999997754
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.27 Score=48.75 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=37.6
Q ss_pred ccccccccccccccceE-----E---eCCCCcccchhhHhc-----------CCCCCCCCccccceE
Q 021834 255 KMVMVCKGCNSRDSCVL-----F---LPCRHLCACRACEAF-----------LDTCPVCLTPKKASI 302 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vl-----L---lPCrHlclC~~C~~~-----------l~~CPvCR~~i~~sV 302 (307)
.....|-||++.-.... | .||.|. +|..|... .+.||.||.+....+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 45789999999877666 5 779998 79999743 379999999877654
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.82 E-value=24 Score=38.29 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=45.5
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
.|.|+.|.||-++++.....||+++.++.|.+.-+..-++++.-+..|.+.|.-+.+.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk 602 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDK 602 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3678889999999999999999999999999876665355666677777777666544
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.70 E-value=18 Score=37.53 Aligned_cols=91 Identities=24% Similarity=0.224 Sum_probs=69.5
Q ss_pred HHHHHHHHHH----HHHHHHHHh----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 95 LALQAEKQRQ----EIDHYIISQ----NERLRLVLQEQRK-QQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 95 l~~~l~qQ~~----EID~~i~~q----~ErLR~~L~E~r~-Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
|.++|+-|+. .+-.|.+.| .+.+-..+.|.+. .+-...+.++...+-+||.+...-+.+..++..++.|-=
T Consensus 326 l~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 326 LTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666654 233333434 4444455666676 777788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 021834 166 KKLEMESQAWQRIAQENEAM 185 (307)
Q Consensus 166 rqL~~E~Q~Wq~~Ak~nEA~ 185 (307)
+.|..+-+.|+..++.-|-.
T Consensus 406 ~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 406 KKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998864433
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=87.54 E-value=0.31 Score=37.64 Aligned_cols=42 Identities=31% Similarity=0.638 Sum_probs=22.2
Q ss_pred cccccccccccccc-eEEeCCCCcccchhhHhcC--CCCCCCCccc
Q 021834 256 MVMVCKGCNSRDSC-VLFLPCRHLCACRACEAFL--DTCPVCLTPK 298 (307)
Q Consensus 256 ~~~~C~iC~~~~a~-vlLlPCrHlclC~~C~~~l--~~CPvCR~~i 298 (307)
....|.+|.+--.. |.+--|-|. +|..|...- ..||+|+.|-
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred HhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 45789999986554 456789999 799999764 7899999875
No 49
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=0.42 Score=48.46 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=34.7
Q ss_pred cccccccccccccc---cceEEeCCCCcccchhhHhcC------------CCCCCCCcccc
Q 021834 254 TKMVMVCKGCNSRD---SCVLFLPCRHLCACRACEAFL------------DTCPVCLTPKK 299 (307)
Q Consensus 254 ~~~~~~C~iC~~~~---a~vlLlPCrHlclC~~C~~~l------------~~CPvCR~~i~ 299 (307)
......|.||++.. .+++++||+|+ +|+.|...- -.||-+..+-.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 45678999999865 47999999998 799998651 47877665543
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=0.52 Score=47.58 Aligned_cols=46 Identities=22% Similarity=0.458 Sum_probs=37.0
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHh----cCCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEA----FLDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~----~l~~CPvCR~~i~~ 300 (307)
......|.+|+..--.-+..||+|. .|..|-. .-..||.||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 3667899999987776666799999 6999943 34799999998864
No 51
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=82.50 E-value=4 Score=38.85 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=24.9
Q ss_pred ccccccccccccceEEeCC-----CCcccchhhHhc----CCCCCCCCccccceEEEe
Q 021834 257 VMVCKGCNSRDSCVLFLPC-----RHLCACRACEAF----LDTCPVCLTPKKASIEAL 305 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPC-----rHlclC~~C~~~----l~~CPvCR~~i~~sV~V~ 305 (307)
...|++|+..+.-.++.+= ||+ .|.-|... --.||.|-......++.|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4699999999987777664 444 69999864 258999999888877765
No 52
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.49 E-value=0.73 Score=44.83 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=34.2
Q ss_pred cccccccccccccccceEE-eCCCCcccchhhH-hcCCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLF-LPCRHLCACRACE-AFLDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~-~~l~~CPvCR~~i~~ 300 (307)
......|++|.+.-.-=++ -+=||+ +|..|. .....||.||-++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccceecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 3456799999986654443 233799 599999 556899999999873
No 53
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.38 E-value=0.54 Score=45.86 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=38.9
Q ss_pred cccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccceEEE
Q 021834 258 MVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASIEA 304 (307)
Q Consensus 258 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V 304 (307)
..|-||..--.+=|+--|+|. +|..|+.. -..|++|...+.++.-+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 469999988887788899999 69999976 37899999999887653
No 54
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=81.98 E-value=0.4 Score=44.70 Aligned_cols=47 Identities=21% Similarity=0.435 Sum_probs=39.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccceEEE
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASIEA 304 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V 304 (307)
...|.||...-.+-++--|+|. +|..|+.+ -.+|-+|.....+...|
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 3599999998888888899999 79999975 48999999888776654
No 55
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.87 E-value=65 Score=36.14 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 021834 114 NERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSL 193 (307)
Q Consensus 114 ~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~L 193 (307)
-++|...+.+.|+-|...| ..-.. +.+.|--.+.-|..+.++|.+|.+.|.++.-+.+.|-.++.+-.-+...||..|
T Consensus 426 y~klkek~t~l~~~h~~lL-~K~~d-i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 426 YEKLKEKYTELRQEHADLL-RKYDD-IQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444445555555554322 22111 223444444556678999999999999999999999999999988888888877
Q ss_pred HHHH
Q 021834 194 EQLK 197 (307)
Q Consensus 194 qQv~ 197 (307)
.-++
T Consensus 504 ~~l~ 507 (980)
T KOG0980|consen 504 ALLL 507 (980)
T ss_pred HHHH
Confidence 5443
No 56
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=80.60 E-value=0.52 Score=47.63 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=0.0
Q ss_pred cccccccccc-------------------cccceEEeCCCCcccch----hhHhc--------CCCCCCCCccccc---e
Q 021834 256 MVMVCKGCNS-------------------RDSCVLFLPCRHLCACR----ACEAF--------LDTCPVCLTPKKA---S 301 (307)
Q Consensus 256 ~~~~C~iC~~-------------------~~a~vlLlPCrHlclC~----~C~~~--------l~~CPvCR~~i~~---s 301 (307)
..+.|.+|+. .+...+|.||+|+|.=+ ++.-. ...||.|-.++.+ .
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 3789999986 44567889999997211 11111 2699999999876 4
Q ss_pred EEEe
Q 021834 302 IEAL 305 (307)
Q Consensus 302 V~V~ 305 (307)
|+.+
T Consensus 407 vrLi 410 (416)
T PF04710_consen 407 VRLI 410 (416)
T ss_dssp ----
T ss_pred eEEE
Confidence 5544
No 57
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.92 E-value=18 Score=30.93 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=42.2
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
...+++.++.++++....+..|++++..+..|...++...+.-+.....+...|....
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888888888888877777766666666655555543
No 58
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=79.63 E-value=22 Score=39.42 Aligned_cols=81 Identities=30% Similarity=0.278 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-
Q 021834 102 QRQEIDHYIISQ----NERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ- 176 (307)
Q Consensus 102 Q~~EID~~i~~q----~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq- 176 (307)
|-.|..++.++| .||-|++-+|+|+|... | .|..+.|+..||.+|=|+|.+|-+.|.+.--
T Consensus 919 ~~~e~er~rk~qE~~E~ER~rrEaeek~rre~e------e--------~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e 984 (1259)
T KOG0163|consen 919 QIEELERLRKIQELAEAERKRREAEEKRRREEE------E--------KKRAKAEMETKRKAEEEQRKAQEEEERRLALE 984 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH------H--------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444555555443 67777777777775421 1 2444555556666666666555444443211
Q ss_pred ---HHHHHhHHHHHHHHHhHHHHH
Q 021834 177 ---RIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 177 ---~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
.+|++-|--+.. ++.|+|-.
T Consensus 985 ~q~qla~e~eee~k~-q~~~Eqer 1007 (1259)
T KOG0163|consen 985 LQEQLAKEAEEEAKR-QNQLEQER 1007 (1259)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHH
Confidence 345544444433 44466543
No 59
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=79.59 E-value=26 Score=26.90 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=51.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHHHHhHHH
Q 021834 112 SQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQ------AWQRIAQENEAM 185 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q------~Wq~~Ak~nEA~ 185 (307)
...+++...|.+-++.|.+.|...... ..-=++-+.=...+++....+..+|++|..... .+-...+-....
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq 91 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQ 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHH
Confidence 345667778888888887777666533 122223344445567777788889999888853 344445555556
Q ss_pred HHHHHHhHHHH
Q 021834 186 VFSLNNSLEQL 196 (307)
Q Consensus 186 a~~Lr~~LqQv 196 (307)
..+|...+..+
T Consensus 92 ~~~L~~kf~~~ 102 (103)
T PF00804_consen 92 VQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 60
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.22 E-value=23 Score=27.56 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=28.6
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
+.++|++||+.|+........|.-.--++..-.---+...+.+|..+..|+..++.+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777776654433333332222222222223334455566666666555543
No 61
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.12 E-value=0.61 Score=44.67 Aligned_cols=41 Identities=32% Similarity=0.662 Sum_probs=30.2
Q ss_pred ccccccccccc-----cccceEEeC-CCCcccchhhHhcC-----CCCC--CCCc
Q 021834 255 KMVMVCKGCNS-----RDSCVLFLP-CRHLCACRACEAFL-----DTCP--VCLT 296 (307)
Q Consensus 255 ~~~~~C~iC~~-----~~a~vlLlP-CrHlclC~~C~~~l-----~~CP--vCR~ 296 (307)
.....|++|.. ...-+++-| |.|. +|..|..++ ..|| -|..
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 34568999975 234556668 9999 699999875 6899 6743
No 62
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.01 E-value=1e+02 Score=32.85 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021834 111 ISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLN 190 (307)
Q Consensus 111 ~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr 190 (307)
+.+.++|...|...++. +..|....+. +.........|.+.+..++.++.+|+++|..+...+....+++|.....|+
T Consensus 170 ~~~v~~l~~eL~~~~ee-~e~L~~~~ke-l~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 170 REEVERLEAELEQEEEE-MEQLKQQQKE-LTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666553 3334333332 233444566777778888888888888888888888877777766655543
No 63
>PHA00327 minor capsid protein
Probab=77.50 E-value=0.88 Score=41.14 Aligned_cols=48 Identities=33% Similarity=0.549 Sum_probs=30.5
Q ss_pred CCCCCC--C-CCCCCCcc--ccccCCccccccCCCCCcccccchhhhhcCcchhHHHH
Q 021834 23 GINPLL--G-GGGSSPQD--LIVDNACCGVGVNGSNGFCFDMQPQKLRQHPQHMQQQQ 75 (307)
Q Consensus 23 ~~~~~~--~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (307)
|+|||| | ||-+||+- |-++||+-+ |++ -.|.+|+.--+.+.++.+-|+
T Consensus 74 GLNpLla~g~GgASsPsGAg~Sp~Np~eS-gln----Sa~~v~~l~~~~~r~~aelQn 126 (187)
T PHA00327 74 GLNPLLAFGKGGASSPSGAGWSPNNPVES-GLN----SALAVQRLTYERKRMQAELQN 126 (187)
T ss_pred CccHHHHhcCCCCCCCCCCCCCCCCcHHH-HHh----HHHHHHHHHHHHHHHHHHHHH
Confidence 679986 6 78888886 889999653 666 247777653333333333333
No 64
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.46 E-value=0.81 Score=47.62 Aligned_cols=46 Identities=28% Similarity=0.645 Sum_probs=32.5
Q ss_pred ccccccccccccc-----------------ccceEEeCCCCcccchhhHhc-CC----CCCCCCccccc
Q 021834 254 TKMVMVCKGCNSR-----------------DSCVLFLPCRHLCACRACEAF-LD----TCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~-----------------~a~vlLlPCrHlclC~~C~~~-l~----~CPvCR~~i~~ 300 (307)
......|.||+.. .++.++-||.|. +=..|-.. |+ .||+||+++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4566799999972 123556699888 46677654 32 89999999764
No 65
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.42 E-value=22 Score=37.20 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=15.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 150 Eier~~rrn~ELeErlrqL~~ 170 (307)
.|+++++|+++|+.|+=+|-.
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888888766543
No 66
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=77.40 E-value=31 Score=28.98 Aligned_cols=66 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhhhHHHHHHHHHHH
Q 021834 104 QEIDHYIISQNERLRLVLQEQRK---QQLEVLLKKIEIKTSALLRQKD----EEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 104 ~EID~~i~~q~ErLR~~L~E~r~---Rh~r~ll~avE~~~~~rLReKe----~Eier~~rrn~ELeErlrqL~ 169 (307)
.-+|.++.-=.|.++..+.+.+. .+...+=.++++.+.+-|.... +||+.+..|..+|+.+|+.|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555566666665554 3334555667777766666654 889999999999999998875
No 67
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.25 E-value=53 Score=31.17 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 102 QRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 102 Q~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
=..|||+-|. +.+.++..+....++.....++.+.+.++........+++.++.++..+.
T Consensus 106 F~~eI~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 165 (301)
T PF14362_consen 106 FEKEIDQKLD-----------EIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEA 165 (301)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467766444 34555555555666666666677777777777777777777666665443
No 68
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=76.79 E-value=2.5 Score=32.26 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=32.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 256 MVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 256 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
....|.++++--.+=+++||+|. +++.|-.. -.+||+|+.+++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45789999999999999999966 68888643 4789999988875
No 69
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=76.05 E-value=1.2 Score=44.11 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=32.0
Q ss_pred ccccccccccccc-cceEEeCCCCcccchhhHhcC--CCCCCCCcccc
Q 021834 255 KMVMVCKGCNSRD-SCVLFLPCRHLCACRACEAFL--DTCPVCLTPKK 299 (307)
Q Consensus 255 ~~~~~C~iC~~~~-a~vlLlPCrHlclC~~C~~~l--~~CPvCR~~i~ 299 (307)
+....|..|.--- .--=++||.|. +|-+|+..- +.||.|.-.|-
T Consensus 88 p~VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 88 PRVHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred cceEeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHH
Confidence 4467888886432 23336899998 799999764 69999976654
No 70
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=76.02 E-value=85 Score=31.10 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKT-------SALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~-------~~rLReKe~Eier~~rrn~ELeErl 165 (307)
.+-+++|.+.+.|+.-+|+.+..+|-..++.+- +.||.+|+... +.+|.-.|+-|.||+ -.-.|.+|+
T Consensus 23 ~sav~qL~~~r~~teelIr~rVrq~V~hVqaqE----reLLe~v~~rYqR~y~ema~~L~~LeavLqRir-~G~~LVekM 97 (324)
T PF12126_consen 23 RSAVSQLGRARADTEELIRARVRQVVAHVQAQE----RELLEAVEARYQRDYEEMAGQLGRLEAVLQRIR-TGGALVEKM 97 (324)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hHHHHHHHH
Confidence 345789999999999999999888877765544 47888888643 444555555555543 244566776
Q ss_pred H
Q 021834 166 K 166 (307)
Q Consensus 166 r 166 (307)
+
T Consensus 98 ~ 98 (324)
T PF12126_consen 98 K 98 (324)
T ss_pred H
Confidence 3
No 71
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=75.50 E-value=48 Score=34.71 Aligned_cols=60 Identities=27% Similarity=0.322 Sum_probs=43.4
Q ss_pred HHHHHhhHHHHHHHHhhhHHHHHHHHH----HHHH-----------HHHHHHHHHHhHHHHHHHHHhHHHHHHHh
Q 021834 141 SALLRQKDEEIAKATNRTMELEILLKK----LEME-----------SQAWQRIAQENEAMVFSLNNSLEQLKEKA 200 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn~ELeErlrq----L~~E-----------~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~~ 200 (307)
-+-|-+||+||+|+-...-|||.-.+. |..| -..+|+.-+.|.+--.-||+.|+.+++++
T Consensus 452 dk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 452 DKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 366889999999999999999853321 1111 12466677888888888999998887753
No 72
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.24 E-value=98 Score=31.32 Aligned_cols=100 Identities=24% Similarity=0.271 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHH----------HHHHHHHhhHHHHHHHHh
Q 021834 96 ALQAEKQRQEIDHYIISQNERLRLVLQEQR---------KQQLEVLLKKIEI----------KTSALLRQKDEEIAKATN 156 (307)
Q Consensus 96 ~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r---------~Rh~r~ll~avE~----------~~~~rLReKe~Eier~~r 156 (307)
-.-++.++.|.++ ++.|+++|...|-..| ..|+..++.-.++ +..+--+|||+|-...+|
T Consensus 91 ~es~~e~q~e~~q-L~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 91 RESVEERQQESEQ-LQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 3456777777777 4777887777765544 3444455544433 233456788888888777
Q ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHhHHHH
Q 021834 157 RTMELEILLKKLEMESQAW----QRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q~W----q~~Ak~nEA~a~~Lr~~LqQv 196 (307)
..+|--....-|..|.|+= +.+-+...+-+..|++..+.+
T Consensus 170 ELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 170 ELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 6555555555677777652 345555556666666665553
No 73
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=75.23 E-value=1.2 Score=47.83 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=34.5
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC------CCCCCCCcccc
Q 021834 258 MVCKGCNSRDSCVLFLPCRHLCACRACEAFL------DTCPVCLTPKK 299 (307)
Q Consensus 258 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l------~~CPvCR~~i~ 299 (307)
..|.+|.+ ..+.++.||+|. .|.+|-... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 888999999999 699998653 47999998764
No 74
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=74.80 E-value=38 Score=28.39 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=41.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 110 IISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 110 i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
||.|+.-|++++-+-+.+.. .|-.-+..+ -..||-.+.|++-++.+|.-|+-||..|-.|-.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~-~L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA-ELKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778887766654432 222222221 134777788999999999999999987776655
No 75
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=74.59 E-value=3.7 Score=31.18 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQAWQRIA 179 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~A 179 (307)
-+|++-.+.+..||++|..+|+.||..-+..|
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46888899999999999999999998755443
No 76
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=73.90 E-value=1.4 Score=43.73 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=41.6
Q ss_pred cccccccccccccccceEEeCCCCcccchhhH-----hcCCCCCCCCccccceEEE
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACE-----AFLDTCPVCLTPKKASIEA 304 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~-----~~l~~CPvCR~~i~~sV~V 304 (307)
.+....|..|+.+..-+.+.||+|-++|..|. .+...||+|.........|
T Consensus 133 ~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 133 KGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 34567999999999999999999999998764 4457899998877665543
No 77
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.74 E-value=0.86 Score=49.73 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=31.4
Q ss_pred cccccccccccceEE---eCCCCcccchhhHhc----CCCCCCCCccccceEE
Q 021834 258 MVCKGCNSRDSCVLF---LPCRHLCACRACEAF----LDTCPVCLTPKKASIE 303 (307)
Q Consensus 258 ~~C~iC~~~~a~vlL---lPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~ 303 (307)
..|.+|...-.+-+. .||.|. +|..|... ..+||+||..+..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 355566544333322 689998 79999865 4899999998876654
No 78
>smart00338 BRLZ basic region leucin zipper.
Probab=72.87 E-value=36 Score=25.18 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
+.+.+.+++.+...|.+|..++..|..|....
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666666665555543
No 79
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.54 E-value=16 Score=30.55 Aligned_cols=66 Identities=18% Similarity=0.122 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 90 PFSQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 90 ~~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
+.++.+..-+.--+.=|+.++..| ..|...-.....++++...+++++..+..++.+.++.|-
T Consensus 52 ~~dp~~~klfrLaQl~ieYLl~~q-----------------~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 52 FVDPNFLKLFRLAQLSIEYLLHCQ-----------------EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556555555556666665554 334444455557888999999999999999999999998
Q ss_pred HHH
Q 021834 170 MES 172 (307)
Q Consensus 170 ~E~ 172 (307)
.|.
T Consensus 115 ~E~ 117 (118)
T PF13815_consen 115 KES 117 (118)
T ss_pred Hhc
Confidence 774
No 80
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=71.79 E-value=40 Score=28.99 Aligned_cols=65 Identities=28% Similarity=0.287 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHhhhHHHH
Q 021834 93 QSLALQAEKQRQEIDHYII-SQNERLRLVLQEQRKQQLEVLLKKIEIKT----SALLRQKDEEIAKATNRTMELE 162 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~-~q~ErLR~~L~E~r~Rh~r~ll~avE~~~----~~rLReKe~Eier~~rrn~ELe 162 (307)
-.|+.++++.+..|..+=. .+++.++..+.+.|. -|.+.+..+ ..+--..+..|..+.+|.+|||
T Consensus 70 LALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 70 LALLDELERAQQRIAELEQECENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677765555544422 456777777666665 334444444 3444556777777888888875
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=71.62 E-value=64 Score=35.51 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 137 EIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 137 E~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
...++||||+|+-|-+.+-+|+.| .|+.|.-|.+.-..+....|.|--.++-++..+-
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ 529 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIEKHQ 529 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 457789999999999988887654 4667788888888888888888888887776654
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=71.54 E-value=1.8 Score=37.98 Aligned_cols=46 Identities=39% Similarity=0.747 Sum_probs=35.3
Q ss_pred cccccccccccccceEEe-C---CCCcccchhhHhcC-------CCCCCCCccccceE
Q 021834 256 MVMVCKGCNSRDSCVLFL-P---CRHLCACRACEAFL-------DTCPVCLTPKKASI 302 (307)
Q Consensus 256 ~~~~C~iC~~~~a~vlLl-P---CrHlclC~~C~~~l-------~~CPvCR~~i~~sV 302 (307)
..-.|-||.+...+-=|| | |+ .-+|..|...+ .+||+|++...++-
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 456899999988765553 3 55 66899998764 79999999887763
No 83
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=70.53 E-value=3 Score=29.93 Aligned_cols=36 Identities=28% Similarity=0.735 Sum_probs=23.7
Q ss_pred ccccccc--cccceEEeCCC-----CcccchhhHhc------CCCCCCCC
Q 021834 259 VCKGCNS--RDSCVLFLPCR-----HLCACRACEAF------LDTCPVCL 295 (307)
Q Consensus 259 ~C~iC~~--~~a~vlLlPCr-----HlclC~~C~~~------l~~CPvCR 295 (307)
.|+||++ .+.+.++.||. |++ =..|... ..+||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56678889995 221 1345432 35899995
No 84
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.86 E-value=49 Score=34.50 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQ 146 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLRe 146 (307)
.|.+++.+-+.|+..++ .++++|+..-++.|+|. ..|+..+..+|..
T Consensus 63 Tlva~~k~~r~~~~~l~-~~N~~l~~eN~~L~~r~-----~~id~~i~~av~~ 109 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLI-SENEALKAENERLQKRE-----QSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHh
Confidence 36778888899998876 47888888888877765 3444444444433
No 85
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.66 E-value=1.6e+02 Score=32.30 Aligned_cols=100 Identities=24% Similarity=0.287 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHH------HHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHH
Q 021834 97 LQAEKQRQEIDHY------IISQNERLRLVLQ----------EQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTME 160 (307)
Q Consensus 97 ~~l~qQ~~EID~~------i~~q~ErLR~~L~----------E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~E 160 (307)
..|+.|-.|++++ -+.+.|.||.+|. |..+|....+=..=+.-+..--.+-.+++...+.+..+
T Consensus 94 mrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~ 173 (739)
T PF07111_consen 94 MRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEE 173 (739)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788899988 5566777775332 22222222222222222333334455677788888888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 161 LEILLKKLEMES-QAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 161 LeErlrqL~~E~-Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
|++.|+.+...- +.=-.+|. -..-+..|+..|-+..
T Consensus 174 Le~~L~~le~~r~~e~~~La~-~q~e~d~L~~qLsk~~ 210 (739)
T PF07111_consen 174 LEKSLESLETRRAGEAKELAE-AQREADLLREQLSKTQ 210 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 888887776532 11111111 1123466777776643
No 86
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.50 E-value=21 Score=30.55 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 147 KDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 147 Ke~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
--+|+|-++.+..||+||.++|+.||...+..+-
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3468888889999999999999999988766553
No 87
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.33 E-value=50 Score=33.68 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHH
Q 021834 91 FSQSLALQAEKQRQEIDHYIISQN----------ERLRLVLQEQRKQQL 129 (307)
Q Consensus 91 ~s~~l~~~l~qQ~~EID~~i~~q~----------ErLR~~L~E~r~Rh~ 129 (307)
-++||.++|++.+..+-+-|..+. ++|-+.|+|-|+||-
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999998888877777664 456677899999994
No 88
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=69.26 E-value=3.9 Score=40.93 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=15.9
Q ss_pred ccccccccccccccceEEe
Q 021834 255 KMVMVCKGCNSRDSCVLFL 273 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLl 273 (307)
.....|..|+..+++|.|.
T Consensus 269 ~e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred cccCCccccccCCCCcEEE
Confidence 3456899999999999886
No 89
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=68.65 E-value=2.3 Score=31.22 Aligned_cols=43 Identities=28% Similarity=0.746 Sum_probs=25.0
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC----CCCCCCCccccceE
Q 021834 258 MVCKGCNSRDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKASI 302 (307)
Q Consensus 258 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~sV 302 (307)
.-|+.|.-.....+ -|.-..+|-.|-..| +.||+|..+....|
T Consensus 3 ~nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 36899987777655 588888999999876 79999998877654
No 90
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.44 E-value=72 Score=31.26 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
.+|++-+.||+...++..++++++..+...-.
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666655554433
No 91
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.11 E-value=2.2e+02 Score=32.69 Aligned_cols=76 Identities=26% Similarity=0.216 Sum_probs=57.2
Q ss_pred HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 021834 105 EIDHYIIS--QNERLRLVLQEQRKQQLEVLLKKIE------IKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ 176 (307)
Q Consensus 105 EID~~i~~--q~ErLR~~L~E~r~Rh~r~ll~avE------~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq 176 (307)
.=|+.+++ ++-++-..|+|.+.+-+-.+++.+= +...++.+..+++|.++.+.+++||+.-|.|-.|...-+
T Consensus 370 ts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 370 TSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL 449 (1195)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567664 4567778888888877777666542 236677888899999999999999999999999987755
Q ss_pred HHHH
Q 021834 177 RIAQ 180 (307)
Q Consensus 177 ~~Ak 180 (307)
.--.
T Consensus 450 ~e~~ 453 (1195)
T KOG4643|consen 450 EETS 453 (1195)
T ss_pred HHHH
Confidence 4433
No 92
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.63 E-value=2.3e+02 Score=33.64 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=4.7
Q ss_pred Cccccccc
Q 021834 209 EDAESCCD 216 (307)
Q Consensus 209 dDAeScc~ 216 (307)
+.|+.+|+
T Consensus 424 e~~~~~~~ 431 (1486)
T PRK04863 424 ERAKQLCG 431 (1486)
T ss_pred HHHHHHhC
Confidence 45566665
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.75 E-value=1.1e+02 Score=28.37 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=19.1
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
.++.+.+.++..+..+|.+|.+.+..+..|+..
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666666665555443
No 94
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.58 E-value=1.2e+02 Score=34.49 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 95 LALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 95 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
+.-++++-+.|+.-+++ +.|+|.+.+.+.- +.|.-+.+-|=.-| =.|+=++.++-||.+|||||+.|+.|...
T Consensus 401 ~~kelE~k~sE~~eL~r-~kE~Lsr~~d~aE-----s~iadlkEQVDAAl-GAE~MV~qLtdknlnlEekVklLeetv~d 473 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRR-QKERLSRELDQAE-----STIADLKEQVDAAL-GAEEMVEQLTDKNLNLEEKVKLLEETVGD 473 (1243)
T ss_pred HHHHHHHHhhHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHhh-cHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 44556666666665544 3455544443332 22222222111111 13566777888888888888888776544
Q ss_pred -------HHHHHHHhHHHHHHHHHhHHHH
Q 021834 175 -------WQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 175 -------Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
--.++.+|--....||-.|+++
T Consensus 474 lEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 474 LEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666778888888887
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.66 E-value=52 Score=35.44 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=12.2
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
+.+|++|.+|++++++..|-.+++.+|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544444433333333
No 96
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.31 E-value=1.2e+02 Score=28.48 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
+-|+++|++= ++|..++.+|...|...+.+.. .-.+.+....-.-|++.-..|+.+.+.+..|+-.+..+..|.
T Consensus 11 dRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~-~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 11 DRLASYIEKV-----RFLEQENKRLESEIEELREKKG-EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhccc-ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 3456666553 3566778888888877776642 222445555566677777888888888888888888888888
Q ss_pred HHHHHHHHH
Q 021834 173 QAWQRIAQE 181 (307)
Q Consensus 173 Q~Wq~~Ak~ 181 (307)
..++.+...
T Consensus 85 ~~~r~k~e~ 93 (312)
T PF00038_consen 85 EDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887665543
No 97
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=65.22 E-value=95 Score=27.15 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQL--EVLLKKIEIKTSALLRQ 146 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~--r~ll~avE~~~~~rLRe 146 (307)
.++..|.++..++|. ..+.|+..|.+.-+.+. ..++..+-.....+.+.
T Consensus 22 ~i~~~L~k~~~~v~~----~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 22 GIQDFLDKYERDVDK----DIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccchHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 477778888888876 44567777777666653 44566666665555555
No 98
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=64.76 E-value=68 Score=25.28 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 021834 96 ALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIA 152 (307)
Q Consensus 96 ~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eie 152 (307)
...++.+...+-.-|....++|+..|++.++ .++..++..-..++...++.++
T Consensus 30 ~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~----~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 30 IQEVEENAADVEAQIKAAFDELRNALNKRKK----QLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666777777888888887766 4445555444444333333333
No 99
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.64 E-value=73 Score=35.31 Aligned_cols=59 Identities=25% Similarity=0.298 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHH
Q 021834 112 SQNERLRLVLQEQRK--QQLEVLLKKIEI---KTSALLRQKDEEIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~--Rh~r~ll~avE~---~~~~rLReKe~Eier~~rrn~ELeErlrqL~~ 170 (307)
+++.|++..++|+-. .++.-=|.+.|. ...--||++|+||+|++-.+.-|+--+++|-.
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777777777643 223333344433 22334888888888888888888877666654
No 100
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=64.51 E-value=47 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHh---hHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 134 KKIEIKTSALLRQ---KDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 134 ~avE~~~~~rLRe---Ke~Eier~~rrn~ELeErlrqL~~E 171 (307)
.++|+.+.+|+-. -|+||||+..-.++|++++.++..+
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777654 5899999999999999999888764
No 101
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.31 E-value=30 Score=33.92 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=22.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 021834 149 EEIAKATNRTMELEILLKKLEMESQAWQRIA 179 (307)
Q Consensus 149 ~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~A 179 (307)
-|++-..+||.+|.+++-.|+-|-+--+.+-
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888877655443
No 102
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=63.68 E-value=1.7e+02 Score=29.50 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCccccccCC
Q 021834 23 GINPLLGGGGSSPQDLIVDNA 43 (307)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ 43 (307)
-|-||.||+|+++=|-.|-+|
T Consensus 37 ~~e~~~gG~gg~vi~AVmVDp 57 (387)
T COG3064 37 TIEASGGGGGGSVIDAVMVDP 57 (387)
T ss_pred cccccCCCCCcceeeeeEeCc
Confidence 467888888877777444344
No 103
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=63.52 E-value=54 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~ 169 (307)
.+.+.+++.|..+||.||..|+
T Consensus 56 ~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 56 KAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777777665
No 104
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.91 E-value=1.5e+02 Score=28.37 Aligned_cols=100 Identities=21% Similarity=0.110 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 92 SQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 92 s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
.+...+.+..++.-||.|++.--.++-..+.+--++-++.. .-++.+..-|++-+.|+.+.+....|-+++.-.+..|
T Consensus 17 ~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~--~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqe 94 (246)
T KOG4657|consen 17 GDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ--VELENLKADLRETENELVKVNELKTEKEARQMGIEQE 94 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999987764444444433333222211 1223344557777777777777666666666666666
Q ss_pred HHHHHHHHHHhHHHHHHHHHhH
Q 021834 172 SQAWQRIAQENEAMVFSLNNSL 193 (307)
Q Consensus 172 ~Q~Wq~~Ak~nEA~a~~Lr~~L 193 (307)
.-+-|..-.-.+.+...|+..+
T Consensus 95 ik~~q~elEvl~~n~Q~lkeE~ 116 (246)
T KOG4657|consen 95 IKATQSELEVLRRNLQLLKEEK 116 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6665554443333433333333
No 105
>PF13210 DUF4018: Domain of unknown function (DUF4018)
Probab=61.27 E-value=1.9 Score=39.09 Aligned_cols=17 Identities=53% Similarity=1.036 Sum_probs=12.9
Q ss_pred ccccCCCCCCCCCCCCC
Q 021834 17 GLGFGYGINPLLGGGGS 33 (307)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (307)
.+||||||+|++--.+.
T Consensus 132 ALGfGY~i~pl~saa~~ 148 (192)
T PF13210_consen 132 ALGFGYAINPLFSAAEL 148 (192)
T ss_pred HHhcchhhhHHHHhcCc
Confidence 47999999999544443
No 106
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=60.49 E-value=41 Score=27.05 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
||---+.||+++..|..|+++|+|.|...-.
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~ 32 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKT 32 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445578999999999999999998876443
No 107
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=60.26 E-value=2e+02 Score=30.33 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=7.7
Q ss_pred cccccccccc
Q 021834 258 MVCKGCNSRD 267 (307)
Q Consensus 258 ~~C~iC~~~~ 267 (307)
..|++|...-
T Consensus 293 lyC~vCnKsF 302 (508)
T KOG0717|consen 293 LYCVVCNKSF 302 (508)
T ss_pred eEEeeccccc
Confidence 7899997643
No 108
>PRK11637 AmiB activator; Provisional
Probab=59.57 E-value=2e+02 Score=28.86 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL~~ 170 (307)
+|++.+.+|+.+.++..+|++.|.++..
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 109
>smart00338 BRLZ basic region leucin zipper.
Probab=59.35 E-value=69 Score=23.61 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 021834 157 RTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNS 192 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~ 192 (307)
...+||.++..|..|+..++..+..=+.-...|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556899999999999999877666544444444443
No 110
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=58.38 E-value=84 Score=25.13 Aligned_cols=34 Identities=24% Similarity=0.115 Sum_probs=28.1
Q ss_pred HHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 141 SALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
-++|+.|++||++.+....-|..+|.+....+-.
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999888776655544
No 111
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=57.98 E-value=64 Score=28.05 Aligned_cols=69 Identities=32% Similarity=0.333 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 95 LALQAEKQRQEIDHYIISQ------NERLRLVLQEQRKQQLEVLLKKIEIKTS---ALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 95 l~~~l~qQ~~EID~~i~~q------~ErLR~~L~E~r~Rh~r~ll~avE~~~~---~rLReKe~Eier~~rrn~ELeErl 165 (307)
+.++|++=..==+.|.+-+ ...|-..++|+| +++..-|..+- .-++.||.||..++++..++.-.-
T Consensus 50 vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~q-----sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 50 VVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQ-----SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566766654445555433 234455555544 45555555443 558899999999888777766555
Q ss_pred HHH
Q 021834 166 KKL 168 (307)
Q Consensus 166 rqL 168 (307)
+.|
T Consensus 125 ~~L 127 (131)
T PF04859_consen 125 KSL 127 (131)
T ss_pred HHh
Confidence 444
No 112
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.82 E-value=1.2e+02 Score=30.67 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=12.8
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
.-++||..-.++..+.+|+|+|-..+-+.
T Consensus 239 Rt~EeL~~G~~kL~~~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 239 RTEEELNIGKQKLVAMKETLEQQLQSLQK 267 (365)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34455554444444444444443333333
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.73 E-value=2.4e+02 Score=29.32 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 98 QAEKQRQEIDHYIISQNERLRLVLQEQRKQQL-----EVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 98 ~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~-----r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
+++++..+.|+ -.++++..|++.-+++. ..++.|--+++-.+|-+||.||.++...|-.|.|+.
T Consensus 3 ~~~s~~s~~dq----r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 3 PLYSQKSENDQ----RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred hhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666654 23344444444444332 234444455666778889999999988888776643
No 114
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.37 E-value=2.8e+02 Score=29.92 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=57.2
Q ss_pred HHHHHHHHH-HHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 98 QAEKQRQEI-DHYIISQNERL----RLVLQEQRKQQLEVLLKKIEIK---TSALLRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 98 ~l~qQ~~EI-D~~i~~q~ErL----R~~L~E~r~Rh~r~ll~avE~~---~~~rLReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
+|+.|-.|+ |.|+++.+++| ..-.+.+.+|.+..=+.-++.. +..+|..|+.|+.++...+.++...|-+-.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677888887 88999999985 4445555555555555555543 345788899999999888777776666553
Q ss_pred HHHHHHHHHHHHhHHHH
Q 021834 170 MESQAWQRIAQENEAMV 186 (307)
Q Consensus 170 ~E~Q~Wq~~Ak~nEA~a 186 (307)
+. |+.++.++|+.-
T Consensus 244 a~---~q~l~~e~e~L~ 257 (617)
T PF15070_consen 244 AA---YQQLASEKEELH 257 (617)
T ss_pred HH---HHHHHHHHHHHH
Confidence 32 344555555443
No 115
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=57.23 E-value=1.9e+02 Score=27.96 Aligned_cols=80 Identities=23% Similarity=0.197 Sum_probs=43.6
Q ss_pred HHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh---hHHHHHHHHhhhHHHHHHHHHHHH
Q 021834 101 KQRQEIDH---YIISQNERLRLVLQEQRKQQLEVLLKKIEI----KTSALLRQ---KDEEIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 101 qQ~~EID~---~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~----~~~~rLRe---Ke~Eier~~rrn~ELeErlrqL~~ 170 (307)
.|++|+|- +++...+.|-..+.++++.=..+++..+-. ++..+.++ -..||.+-+....+|++.+.+|.+
T Consensus 135 ~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 135 SQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 444445555555555544443333333222 22222221 245677777888888888888888
Q ss_pred HHHHHHHHHH
Q 021834 171 ESQAWQRIAQ 180 (307)
Q Consensus 171 E~Q~Wq~~Ak 180 (307)
|.+.-+.-+.
T Consensus 215 eV~~L~~~~~ 224 (258)
T PF15397_consen 215 EVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHhhc
Confidence 8877544443
No 116
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.11 E-value=2e+02 Score=33.56 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021834 105 EIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEA 184 (307)
Q Consensus 105 EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA 184 (307)
++|.=+....++++....+..+ .-++|+--=-.-+..++.++++++.++.+++..|++.++-+..+++. +.-...
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~----~~~~~~ 539 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN----AADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 4455555556666666666654 22233222222234567777777777777777777777666444443 222334
Q ss_pred HHHHHHHhHHHH
Q 021834 185 MVFSLNNSLEQL 196 (307)
Q Consensus 185 ~a~~Lr~~LqQv 196 (307)
-++.|+.+|+..
T Consensus 540 kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 540 KVNSLRKQLEEA 551 (1317)
T ss_pred hHHHHHHHHHHh
Confidence 567777777754
No 117
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=56.93 E-value=96 Score=28.25 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 134 KKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 134 ~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
+-+...|-.-.++.++||.++.++..-||+ +......++.+|-
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~----~~~~~k~LrnKa~ 154 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEE----IQSKSKTLRNKAN 154 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 333333444455677777777776666663 3344445555444
No 118
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.71 E-value=38 Score=28.01 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=29.2
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQR 177 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~ 177 (307)
.++++...+++.+..++.+|+.+-+.|..|...|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467788888888888888888888888888888775
No 119
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.63 E-value=39 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=27.5
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
+.+.+.+.|++++..+|.+|.+.++.|.-....=..+|+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 556677888888888888888888888763334333444
No 120
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=56.53 E-value=6 Score=39.43 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=29.5
Q ss_pred cccccccccccc-------------------cccceEEeCCCCcccchhhH-hc-----------CCCCCCCCcccc
Q 021834 254 TKMVMVCKGCNS-------------------RDSCVLFLPCRHLCACRACE-AF-----------LDTCPVCLTPKK 299 (307)
Q Consensus 254 ~~~~~~C~iC~~-------------------~~a~vlLlPCrHlclC~~C~-~~-----------l~~CPvCR~~i~ 299 (307)
....+.|++|+. .+.+-.|-||+|+|.=+.=. +. -..||.|-....
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 345688999986 23345678999997422211 11 168999987664
No 121
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=55.73 E-value=67 Score=24.79 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 117 LRLVLQEQRKQQ--LEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 117 LR~~L~E~r~Rh--~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
+|..|...|+-| +-+-+.|++..--.-| .|+|+.||.-.|.+++.+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L-----~iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDAL-----RIQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHH-----HHHHHHHHHHhHHHHHHHHH
Confidence 566666666666 3445555555333333 37888888888888887664
No 122
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.11 E-value=2.3e+02 Score=28.21 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.7
Q ss_pred HHHHHHhhHHHHHHH--------HhhhHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHH
Q 021834 140 TSALLRQKDEEIAKA--------TNRTMELEILLKKLEMESQAW-QRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 140 ~~~rLReKe~Eier~--------~rrn~ELeErlrqL~~E~Q~W-q~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
..|||.....|-+.+ -.....|.-+|++|..|--.- ..+.+..|.+++.|+..|+.+.
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le 148 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE 148 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555544444444 234557778888888775443 3456678899999999998875
No 123
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=54.83 E-value=72 Score=29.73 Aligned_cols=49 Identities=37% Similarity=0.391 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHH
Q 021834 114 NERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEI 163 (307)
Q Consensus 114 ~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeE 163 (307)
.++-|..|+|+||.-.-..|.--|. .-+.+-+|++||.++...|.+|.|
T Consensus 105 se~YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 105 SENYWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888887433222222111 234444566666666555555554
No 124
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=54.38 E-value=62 Score=31.25 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhcc-------CCCCC---chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021834 72 QQQQLQHQQQRNQN-------FDSMP---FSQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEI 138 (307)
Q Consensus 72 ~~~~~~~~~~~~q~-------~~s~~---~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~ 138 (307)
++-.+-.+-+++-+ |++-. .++.+..+|++.-.++|.+ +..+-+...++++.+=.-+|+
T Consensus 129 P~gl~vleR~~~G~~yG~ll~~~~ngq~l~Gd~l~~eLqkr~~~v~~l--------~~q~~k~~~~qv~~in~qlEr 197 (289)
T COG4985 129 PQGLAVLERSRGGQLYGKLLRFDSNGQELDGDPLERELQKRLLEVETL--------RDQVDKMVEQQVRVINSQLER 197 (289)
T ss_pred cchheeeeeccCcchhhheeeeccCCCcccCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655 33222 1345667788777676653 333344445566555555543
No 125
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.15 E-value=84 Score=25.30 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=25.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKKLEMESQAWQRIAQE 181 (307)
Q Consensus 150 Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~ 181 (307)
|++.+.--..+|+..-.+|..|-++|+.+.++
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555678999999999999999998764
No 126
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=54.13 E-value=55 Score=37.46 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 021834 153 KATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 153 r~~rrn~ELeErlrqL~~E~Q~ 174 (307)
....++.+|++.++++.+|...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777666544
No 127
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=53.89 E-value=80 Score=22.65 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=18.1
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
..+.+.++..+...|..|...+..|..|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445566666677777777777666654
No 128
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=53.69 E-value=1.9e+02 Score=26.89 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 97 LQAEKQRQEIDHYIISQNERLR---LVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 97 ~~l~qQ~~EID~~i~~q~ErLR---~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
.+|+-|+.-+|+.|..+.+|+. .-|.-+|.. ..-+..-...+.+-.++.+.|-..+..+...|..+|++|..+
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q--~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQ--QQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665544433 333322222 223333333333344444444444455555555555555443
No 129
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.37 E-value=43 Score=26.63 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=24.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKKLEMESQAWQRIAQE 181 (307)
Q Consensus 150 Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~ 181 (307)
|...+...+-+|+-+-.||..|-+.||.+.++
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667888888999999999998774
No 130
>PHA03415 putative internal virion protein; Provisional
Probab=53.31 E-value=57 Score=36.41 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh--H
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRLVLQEQ-----------RKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRT--M 159 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~-----------r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn--~ 159 (307)
+.-++.+..-+.|.|-+++.-.|-|-+.|.++ |.+.++..=.++|+++.+-|-..|+|--+..+-. -
T Consensus 299 ~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~dp 378 (1019)
T PHA03415 299 DNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMADP 378 (1019)
T ss_pred ccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCCC
Confidence 34578888999999999999999999999995 4555667778889999998877788887766543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021834 160 ELEILLKKLEMESQAWQRIA 179 (307)
Q Consensus 160 ELeErlrqL~~E~Q~Wq~~A 179 (307)
-+--.+++|..|.+.|+..+
T Consensus 379 ~~dp~IarLAd~~~~~he~~ 398 (1019)
T PHA03415 379 NLDPDIARLADESDAFHGQG 398 (1019)
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 45667889999999998883
No 131
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.27 E-value=1.2e+02 Score=24.44 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=39.6
Q ss_pred HhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 145 RQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 145 ReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
.+.++||+++......|.+.|-+..++...|....++ +..-|.+..+.+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~E---vs~rL~~a~e~I 83 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANRE---VSRRLDSAIETI 83 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4778899999999999999999999999998887765 666666555543
No 132
>PLN02189 cellulose synthase
Probab=53.03 E-value=8.5 Score=43.38 Aligned_cols=44 Identities=32% Similarity=0.701 Sum_probs=34.2
Q ss_pred ccccccccccc----ccceEEeCCC--CcccchhhHhc-----CCCCCCCCcccc
Q 021834 256 MVMVCKGCNSR----DSCVLFLPCR--HLCACRACEAF-----LDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~----~a~vlLlPCr--HlclC~~C~~~-----l~~CPvCR~~i~ 299 (307)
....|.||.+. ...-+|+.|. .+.+|..|..- -..||.|++..+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34599999997 5666888995 33489999853 479999998766
No 133
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.83 E-value=1.5 Score=43.85 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=36.0
Q ss_pred ccccccccccccccc-ceEEeCCCCcccchhhHhcC-----CCCCCCCccccce
Q 021834 254 TKMVMVCKGCNSRDS-CVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKAS 301 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a-~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~s 301 (307)
......|.||++--. .+...-|.|. +|..|.+.. ..||-||....+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 455679999997443 4555679999 699999863 8999999876543
No 134
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=52.69 E-value=5.7 Score=28.94 Aligned_cols=24 Identities=33% Similarity=0.807 Sum_probs=11.8
Q ss_pred CCCCcccchhhHhcC-----CCCCCCCccc
Q 021834 274 PCRHLCACRACEAFL-----DTCPVCLTPK 298 (307)
Q Consensus 274 PCrHlclC~~C~~~l-----~~CPvCR~~i 298 (307)
||++. +|..|...+ ..||-||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45655 699997653 5899999874
No 135
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=52.65 E-value=92 Score=23.41 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=33.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 021834 104 QEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNR 157 (307)
Q Consensus 104 ~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rr 157 (307)
.-||.||.. ||.-|.++.. .+++.+-.--.+.|..+-.+||.+.|+
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk~----Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKKS----EILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred hhHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888875 7788887776 566766666777788888888877765
No 136
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.40 E-value=4.5e+02 Score=30.85 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=9.9
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL 168 (307)
+++++.++++......+++++++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~l 309 (1353)
T TIGR02680 285 LGRARDELETAREEERELDARTEAL 309 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333
No 137
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.90 E-value=1.1e+02 Score=23.79 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 156 NRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 156 rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
..|.+|.+...+|..|-.+|+.+-+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777788877655
No 138
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=51.76 E-value=4.3 Score=42.88 Aligned_cols=44 Identities=30% Similarity=0.506 Sum_probs=35.8
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc---------CCCCCCCCccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF---------LDTCPVCLTPK 298 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~---------l~~CPvCR~~i 298 (307)
......|.+|.+...+.+.-.|.|. +|+-|-.. --+||+|..+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 4556799999999999999999887 79999843 26999997554
No 139
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.66 E-value=28 Score=32.21 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKE 198 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~ 198 (307)
--|=|+.++.|..++|+++|.++..++..- ........+.+|.+|+|+|+
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH
Confidence 445588899999999999999988777652 23333445566888888885
No 140
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=51.33 E-value=66 Score=30.28 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNN 191 (307)
Q Consensus 150 Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~ 191 (307)
++.+...+...|++.++++..|...-...+..=|.+...|+.
T Consensus 27 ~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~ 68 (246)
T PF00769_consen 27 ALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666666666666655555554555544444
No 141
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.88 E-value=3.2e+02 Score=29.23 Aligned_cols=69 Identities=26% Similarity=0.249 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHH
Q 021834 112 SQNERLRLVLQEQRKQQLEV--LLKKIEIKT---SALLRQKDEEIAKATNRTMELEILLKKLEMESQ-AWQRIAQ 180 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~--ll~avE~~~---~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q-~Wq~~Ak 180 (307)
+...+|+..+.+.|++--.+ .+..++..+ ..+|=++++|+.-+.++..-||+.++.|..|+- .|-.+++
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34556666666666654433 334444333 467889999999999999999999999999874 4444433
No 142
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=50.86 E-value=3.1e+02 Score=28.49 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021834 157 RTMELEILLKKLEMESQAWQRIAQENE 183 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q~Wq~~Ak~nE 183 (307)
+..+|..+|+.|+.=...|......|.
T Consensus 379 ~l~~~~~~~~~le~~~~~~~~~~~~~~ 405 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDARSEAEDENR 405 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655555555544443
No 143
>PRK11637 AmiB activator; Provisional
Probab=50.04 E-value=2.8e+02 Score=27.77 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 021834 96 ALQAEKQRQEI 106 (307)
Q Consensus 96 ~~~l~qQ~~EI 106 (307)
..++++.+.+|
T Consensus 46 ~~~l~~l~~qi 56 (428)
T PRK11637 46 RDQLKSIQQDI 56 (428)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 144
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=49.37 E-value=45 Score=25.43 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhHHHHH
Q 021834 133 LKKIEIKTSALLRQKDEEIAKATNRTMELEI 163 (307)
Q Consensus 133 l~avE~~~~~rLReKe~Eier~~rrn~ELeE 163 (307)
|.-+..-=+.-|+..-+||++..++|.||.=
T Consensus 12 i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 12 ILFLQQEHAQTLKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccce
Confidence 3334444456677888999999999999863
No 145
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.31 E-value=4e+02 Score=29.36 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=5.6
Q ss_pred ccccCCccc
Q 021834 38 LIVDNACCG 46 (307)
Q Consensus 38 ~~~~~~~~~ 46 (307)
+++|-|..|
T Consensus 406 vLlDE~g~G 414 (771)
T TIGR01069 406 VLFDELGAG 414 (771)
T ss_pred EEecCCCCC
Confidence 667777553
No 146
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=49.25 E-value=8.8 Score=38.47 Aligned_cols=49 Identities=24% Similarity=0.418 Sum_probs=39.0
Q ss_pred cccccccccccccccceEE-eCCCCcccchhhHhcC----CCCCCCCccccceEE
Q 021834 254 TKMVMVCKGCNSRDSCVLF-LPCRHLCACRACEAFL----DTCPVCLTPKKASIE 303 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~~~l----~~CPvCR~~i~~sV~ 303 (307)
...+..|.+|..--.+-+. ..|+|. +|..|-... ..||.|+..++..-.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 4556899999988887777 599999 699998653 689999888765544
No 147
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=49.16 E-value=2.5e+02 Score=27.03 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhHHHH------HHHHHHH
Q 021834 97 LQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSAL-LRQKDEEIAKATNRTMELE------ILLKKLE 169 (307)
Q Consensus 97 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~r-LReKe~Eier~~rrn~ELe------ErlrqL~ 169 (307)
.-..+-.--||.+.---+++.-..+++.|+.|...+..+++...... |-+|-+=+=.+.|.|.+|+ |++=.++
T Consensus 110 ~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~ 189 (247)
T KOG3976|consen 110 LAIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVA 189 (247)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999999988764322 3444444555677777665 4566788
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 021834 170 MESQAWQRIAQENEAMVFSL 189 (307)
Q Consensus 170 ~E~Q~Wq~~Ak~nEA~a~~L 189 (307)
.|.-.|-+.-.+.|++...+
T Consensus 190 ~E~K~~lDy~v~~e~~~rr~ 209 (247)
T KOG3976|consen 190 KEVKRRLDYWVETEASKRRL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887653
No 148
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.67 E-value=1e+02 Score=30.93 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 117 LRLVLQEQRKQQLEVLLKKIEI---KTSALLRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 117 LR~~L~E~r~Rh~r~ll~avE~---~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
+....+.+|+-|...+-+.=|+ ...+|+++||+|+-.+.+...+-.++|+++..|
T Consensus 320 ~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~e 377 (406)
T KOG3859|consen 320 LQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQE 377 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 149
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=48.12 E-value=2e+02 Score=25.61 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
++++.-+.+..|+.. ++..+++|....+ |.++.|.-. | .+|-+.|+..+. .+.+|..++.+|..|+.
T Consensus 40 ~~~~~n~~~~~e~~~-L~~d~e~L~~q~~--~ek~~r~~~---e----~~l~~~Ed~~~~---e~k~L~~~v~~Le~e~r 106 (158)
T PF09744_consen 40 SLASRNQEHEVELEL-LREDNEQLETQYE--REKELRKQA---E----EELLELEDQWRQ---ERKDLQSQVEQLEEENR 106 (158)
T ss_pred HHHHhhhhhhhHHHH-HHHHHHHHHHHHH--HHHHHHHHH---H----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455555666666663 3445555544333 222222111 1 233333333333 33366666666666665
Q ss_pred HHHHHHH
Q 021834 174 AWQRIAQ 180 (307)
Q Consensus 174 ~Wq~~Ak 180 (307)
.-+..++
T Consensus 107 ~L~~~~~ 113 (158)
T PF09744_consen 107 QLELKLK 113 (158)
T ss_pred HHHHHhh
Confidence 5554444
No 150
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=47.86 E-value=92 Score=28.44 Aligned_cols=26 Identities=42% Similarity=0.447 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
++-|+.+.++..++++++++|..|-+
T Consensus 145 ~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 145 QELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544
No 151
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.51 E-value=6.8 Score=26.19 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=12.5
Q ss_pred CCCCCCCCccccceEE
Q 021834 288 LDTCPVCLTPKKASIE 303 (307)
Q Consensus 288 l~~CPvCR~~i~~sV~ 303 (307)
...||+|.++.....+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3699999998776654
No 152
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=46.49 E-value=1e+02 Score=23.11 Aligned_cols=47 Identities=28% Similarity=0.222 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHH
Q 021834 112 SQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKK 167 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrq 167 (307)
-...++..+|...-+|....|+. =.+...|.+++.+.|.||...++|
T Consensus 12 ~~~~~~W~~L~~~l~rY~~vL~~---------R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 12 DEKIRLWDALENFLKRYNKVLLD---------RAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777655543 224567789999999999988876
No 153
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=46.44 E-value=14 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=22.8
Q ss_pred ccccccccccccc--ccceEEeCCCCcccchhhHh
Q 021834 254 TKMVMVCKGCNSR--DSCVLFLPCRHLCACRACEA 286 (307)
Q Consensus 254 ~~~~~~C~iC~~~--~a~vlLlPCrHlclC~~C~~ 286 (307)
......|.+|..+ ...+++.||+|.. -..|..
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 3456789999864 3577788999874 666643
No 154
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=46.39 E-value=3.9e+02 Score=30.62 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021834 136 IEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVF 187 (307)
Q Consensus 136 vE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~ 187 (307)
-......++.+.+.+++.+.....+|++++..+..+-..+......-++...
T Consensus 731 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 782 (1163)
T COG1196 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777777777777777777777777777776665533333333
No 155
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=45.68 E-value=2.8e+02 Score=28.22 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=12.3
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
+.+.+.+++...+...+|++++..+.
T Consensus 101 l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 101 LDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444555555555554443
No 156
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=45.57 E-value=1.9e+02 Score=25.88 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=21.8
Q ss_pred HhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 145 RQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 145 ReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
+.||+|..++..|..+-++++++++..
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME~~ 127 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEMERH 127 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999888888888766544
No 157
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=44.98 E-value=88 Score=30.51 Aligned_cols=94 Identities=28% Similarity=0.292 Sum_probs=51.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HhhHH---HH
Q 021834 86 FDSMPFSQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIK----------TSALL-RQKDE---EI 151 (307)
Q Consensus 86 ~~s~~~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~----------~~~rL-ReKe~---Ei 151 (307)
|.+.++|++ .+|---..||+.|=+.+-|..|+..+-. +++.-+..+|.. .++|| .-|.. -|
T Consensus 177 fn~~f~she--~~l~dkekEl~sfK~sEeeNar~V~kAn---sVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~i 251 (311)
T PF04642_consen 177 FNSVFLSHE--DQLSDKEKELESFKRSEEENARAVEKAN---SVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAI 251 (311)
T ss_pred hhccccccc--cccccHHHHHHHHhhhhhhhHHHHHHHH---HHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHH
Confidence 444444443 2233334578888777777777664432 222233333332 23444 11111 11
Q ss_pred ---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021834 152 ---AKATNRTMELEILLKKLEMESQAWQRIAQENEA 184 (307)
Q Consensus 152 ---er~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA 184 (307)
.++++....+||+|+.|..|-+.-...|+..|-
T Consensus 252 eke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~er 287 (311)
T PF04642_consen 252 EKENQARAELNACEEKLKKMEEEQAEMLRAARTEER 287 (311)
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 233455566789999999888888888876553
No 158
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=44.93 E-value=1e+02 Score=30.52 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 105 EIDHYIISQNERLRLVLQEQRKQQ--LEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 105 EID~~i~~q~ErLR~~L~E~r~Rh--~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
.+.+.|-.++|.|-+..+-+++.- ...|.+ -++|+.||.++|.|.++|.-.|.|..
T Consensus 9 ~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k~~d~v~~~ 66 (359)
T KOG4398|consen 9 QLKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRKLGDLVEKK 66 (359)
T ss_pred HHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchHHHHH
Confidence 345566667777777776666532 223333 35889999999999999777777654
No 159
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=43.81 E-value=1.8e+02 Score=25.90 Aligned_cols=53 Identities=26% Similarity=0.282 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 021834 104 QEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATN 156 (307)
Q Consensus 104 ~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~r 156 (307)
.||+.+=....+-|+..|.+.-+.+-...-.-+|....++..+|+.-|+++.+
T Consensus 94 ~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~ 146 (154)
T PF14738_consen 94 EEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEK 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777666667777888888888888888888898888889999888888865
No 160
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.57 E-value=1.9e+02 Score=32.08 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=57.8
Q ss_pred HHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021834 110 IISQNERLRLVLQEQRKQ------QLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENE 183 (307)
Q Consensus 110 i~~q~ErLR~~L~E~r~R------h~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nE 183 (307)
+..+.+++-..|+.+|+| |...|...+++...--|+|.-+-++++++...||+-.-++|..=..+=-++...
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d-- 245 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTD-- 245 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 345678888888888876 677788888877777777777778888887777776666655544443333333
Q ss_pred HHHHHHHHhHHHHHH
Q 021834 184 AMVFSLNNSLEQLKE 198 (307)
Q Consensus 184 A~a~~Lr~~LqQv~~ 198 (307)
...||..++|+.+
T Consensus 246 --~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 246 --IEDLRGELDQLRR 258 (916)
T ss_pred --HHHHHHHHHHHHH
Confidence 3457777777664
No 161
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=43.55 E-value=3.7e+02 Score=27.27 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 021834 159 MELEILLKKLEMESQ 173 (307)
Q Consensus 159 ~ELeErlrqL~~E~Q 173 (307)
..|+.++|++..++.
T Consensus 158 l~l~~~~R~~ek~n~ 172 (426)
T KOG2008|consen 158 LALMGRMRQLEKKNK 172 (426)
T ss_pred HHHHHHHHHHHHHhH
Confidence 345555555555544
No 162
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.26 E-value=2.7e+02 Score=25.64 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhHHHHHHH
Q 021834 182 NEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 182 nEA~a~~Lr~~LqQv~~~ 199 (307)
-|..+..|+..+.++...
T Consensus 194 ie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 194 IEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355556666666555543
No 163
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=43.21 E-value=1.6e+02 Score=25.69 Aligned_cols=12 Identities=50% Similarity=0.498 Sum_probs=7.2
Q ss_pred CchHHHHHHHHH
Q 021834 90 PFSQSLALQAEK 101 (307)
Q Consensus 90 ~~s~~l~~~l~q 101 (307)
.||++|..+|+.
T Consensus 9 ~fS~~ll~~L~~ 20 (142)
T PF07956_consen 9 QFSQSLLSQLQS 20 (142)
T ss_pred ccCHHHHHHHhC
Confidence 356666666654
No 164
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=43.10 E-value=1.6e+02 Score=25.96 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHh
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEKA 200 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~~ 200 (307)
++-++.+.+-...|+..+.-+..|...++.++++-|.-+..|+..|...+...
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566666677777778888888888899999999999999999877653
No 165
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=43.09 E-value=2.1e+02 Score=24.45 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=10.7
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 150 Eier~~rrn~ELeErlrqL~ 169 (307)
.|+++.+++.+|.-|+=++.
T Consensus 73 rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 73 RLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665554443
No 166
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.80 E-value=86 Score=23.25 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
+..+..+++.+.++..+|.+..+.|..|-..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555554444
No 167
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.68 E-value=98 Score=27.74 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ 176 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq 176 (307)
..+++++..|..+...+..|+++++.+..|-....
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777666533
No 168
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.41 E-value=4.8e+02 Score=28.77 Aligned_cols=13 Identities=8% Similarity=0.378 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYII 111 (307)
Q Consensus 99 l~qQ~~EID~~i~ 111 (307)
+.....+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 3445556666664
No 169
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.36 E-value=9 Score=34.37 Aligned_cols=25 Identities=32% Similarity=0.806 Sum_probs=21.2
Q ss_pred cchhhHhc-CCCCCCCCccccceEEE
Q 021834 280 ACRACEAF-LDTCPVCLTPKKASIEA 304 (307)
Q Consensus 280 lC~~C~~~-l~~CPvCR~~i~~sV~V 304 (307)
+|..|... +..||-|.++|.+..++
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 68888876 58999999999988665
No 170
>PRK14140 heat shock protein GrpE; Provisional
Probab=42.07 E-value=60 Score=29.84 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 141 SALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
..-|-+.+.+|+.+..+..+|.+++.++.+|-+..++++.
T Consensus 36 ~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~ 75 (191)
T PRK14140 36 AELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQ 75 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666666666666666665554
No 171
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.01 E-value=3.4e+02 Score=30.66 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh--hHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIK-TSALLRQ--KDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 99 l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~-~~~rLRe--Ke~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
=++.+.|+.+.=|.+.||=-++.+|+-++.-..|=+-+|+. .+.|=|| ..-||++......||| |.|+++.|-
T Consensus 340 qqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE-kqRqlewEr 415 (1118)
T KOG1029|consen 340 QQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE-KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33444566666666666666666665555444555555542 1111121 1224555555555654 455666553
No 172
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=41.89 E-value=1.4e+02 Score=28.50 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021834 159 MELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 159 ~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
.|...|+..|+.|+++-+..-.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777776444433
No 173
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.73 E-value=4.7e+02 Score=28.00 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021834 96 ALQAEKQRQEIDHYI 110 (307)
Q Consensus 96 ~~~l~qQ~~EID~~i 110 (307)
-.+|...+.+.+.|-
T Consensus 177 ~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 177 EAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 174
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=41.68 E-value=1.3e+02 Score=25.05 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=23.9
Q ss_pred HHHHHhhHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021834 141 SALLRQKDEEIAKATNRT---MELEILLKKLEMESQAWQRIAQENEAMVFSLNN 191 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn---~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~ 191 (307)
..|+.+|..|++...... ..|..++..|...-. -++...|+++..|.+
T Consensus 3 ~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~---~m~dg~e~Va~Vl~N 53 (103)
T PF08654_consen 3 QARIAEKKAELEALKQLRDLSADLASQLEALSEKLE---TMADGAEAVASVLAN 53 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHh
Confidence 356777777777664332 333333333333222 245555556655543
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.57 E-value=1.7e+02 Score=22.82 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
.+.....|++....+|.+|.+.-..|..|++--+ ...++.-.-|++-|..+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~---~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLK---QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 3445667888888899999998999999998744 66666766666666553
No 176
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.46 E-value=2.2e+02 Score=30.69 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEA 184 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA 184 (307)
.+|.+.-.+.+.+.+.+++.++||..+..+.+.|+........
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~k 143 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQK 143 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566777777777777777777777766554433
No 177
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.26 E-value=1.9e+02 Score=24.46 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=7.7
Q ss_pred HHHhhhHHHHHHHHHH
Q 021834 153 KATNRTMELEILLKKL 168 (307)
Q Consensus 153 r~~rrn~ELeErlrqL 168 (307)
|.+-++.+|+.|+..|
T Consensus 70 rtR~kl~~Leari~~L 85 (103)
T COG2960 70 RTREKLAALEARIEEL 85 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 178
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=41.17 E-value=86 Score=26.62 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 021834 123 EQRKQQLEVLLKKIE 137 (307)
Q Consensus 123 E~r~Rh~r~ll~avE 137 (307)
++-+|+++-++.-.+
T Consensus 64 ~K~~r~i~~ml~~~~ 78 (108)
T COG3937 64 EKIPRKIEEMLSDLE 78 (108)
T ss_pred HhhhHHHHHHHhhcc
Confidence 334444545554444
No 179
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.06 E-value=2.9e+02 Score=25.35 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 021834 104 QEIDHYII 111 (307)
Q Consensus 104 ~EID~~i~ 111 (307)
.+|+..|.
T Consensus 41 ~~i~~~l~ 48 (302)
T PF10186_consen 41 RRIEEILE 48 (302)
T ss_pred HHHHHHHH
Confidence 34444433
No 180
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=40.93 E-value=2.1e+02 Score=23.78 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHhHH
Q 021834 112 SQNERLRLVLQEQRKQQLEVLLKKI--EIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ-----RIAQENEA 184 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~ll~av--E~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq-----~~Ak~nEA 184 (307)
....+|+..+...++-|. .++++. +..+.++|...- +.++++..++-.+|+.|..++..-. ...+....
T Consensus 13 ~~i~~i~~~v~~l~~l~~-~~~t~~~~~~~~~~~l~~~~---~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~ 88 (151)
T cd00179 13 GNIDKISEDVEELQKLHS-QLLTAPDADPELKQELESLV---QEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKT 88 (151)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 344455555555555553 456665 344444454444 4445555566667777665543211 02344455
Q ss_pred HHHHHHHhHHHHH
Q 021834 185 MVFSLNNSLEQLK 197 (307)
Q Consensus 185 ~a~~Lr~~LqQv~ 197 (307)
....|...+..++
T Consensus 89 q~~~L~~~f~~~m 101 (151)
T cd00179 89 QHSGLSKKFVEVM 101 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 181
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.92 E-value=11 Score=33.15 Aligned_cols=25 Identities=20% Similarity=0.676 Sum_probs=19.0
Q ss_pred cchhhHhc-CCCCCCCCccccceEEE
Q 021834 280 ACRACEAF-LDTCPVCLTPKKASIEA 304 (307)
Q Consensus 280 lC~~C~~~-l~~CPvCR~~i~~sV~V 304 (307)
+|..|... +..||+|.++|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 46666543 57999999999987665
No 182
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=40.84 E-value=2.2e+02 Score=28.96 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 021834 72 QQQQLQHQQQRNQNFDSMPFSQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEI 151 (307)
Q Consensus 72 ~~~~~~~~~~~~q~~~s~~~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Ei 151 (307)
.=..++|+.++.-.+.+...+.+. ...+++.-.....++.-+...+.|=|-...-+...|.....+++++..+|
T Consensus 278 ~T~~~~YE~YR~e~L~~~~~~~~~------~~~~~~~~~~~~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~L 351 (373)
T COG5019 278 TTENLLYENYRTEKLSGLKNSGEP------SLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKL 351 (373)
T ss_pred HHHHHHHHHHHHHHHhhccccCCh------hhhhccHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776665544333321 11222222222444555555544555556667888888888899999998
Q ss_pred HHHHhhhHHHHHHHHHH
Q 021834 152 AKATNRTMELEILLKKL 168 (307)
Q Consensus 152 er~~rrn~ELeErlrqL 168 (307)
++..++..++|.++.++
T Consensus 352 e~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 352 EEIQKKLEDLEKRLEKL 368 (373)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888888888777654
No 183
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.45 E-value=3e+02 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=19.3
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
.+..+...+++.......+|++.-++|..|.+.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555666666666666666655555
No 184
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.10 E-value=1.2e+02 Score=29.71 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=27.3
Q ss_pred cccccccccccccceEEeCC----CC-cccchhhHhc--C--CCCCCCCccc
Q 021834 256 MVMVCKGCNSRDSCVLFLPC----RH-LCACRACEAF--L--DTCPVCLTPK 298 (307)
Q Consensus 256 ~~~~C~iC~~~~a~vlLlPC----rH-lclC~~C~~~--l--~~CPvCR~~i 298 (307)
....|++|+..+..-++..- |+ +..|.-|... + ..||.|....
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 34589999988864444332 11 2358888754 2 5899998754
No 185
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=39.85 E-value=1.9e+02 Score=22.87 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHhHHH
Q 021834 112 SQNERLRLVLQEQRKQQLEVLLKKIE--IKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ----RIAQENEAM 185 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~ll~avE--~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq----~~Ak~nEA~ 185 (307)
....+|+.-+.+-++-|...+ ++.. ..+..+|. ..++.++.+..++-.+|+.|..++..-. ...+..-+.
T Consensus 15 ~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~---~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q 90 (117)
T smart00503 15 ANIQKISQNVAELQKLHEELL-TPPDADKELREKLE---RLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQ 90 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHH
Confidence 344556666666666565444 3333 22333333 4455566666688888888876654211 123444456
Q ss_pred HHHHHHhHHHHHH
Q 021834 186 VFSLNNSLEQLKE 198 (307)
Q Consensus 186 a~~Lr~~LqQv~~ 198 (307)
...|...|..++.
T Consensus 91 ~~~L~~~f~~~m~ 103 (117)
T smart00503 91 TEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777766553
No 186
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.41 E-value=1.7e+02 Score=25.82 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 021834 115 ERLRLVLQEQRKQQL 129 (307)
Q Consensus 115 ErLR~~L~E~r~Rh~ 129 (307)
-+|..++.-+|+||.
T Consensus 68 ~klkQaIRArRKRhF 82 (149)
T COG3120 68 NKLKQAIRARRKRHF 82 (149)
T ss_pred HHHHHHHHHHHHhhc
Confidence 356666666666664
No 187
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.08 E-value=3e+02 Score=24.94 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHh
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEKA 200 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~~ 200 (307)
-|+-.+|-...-.+..+|++.+++|..|-.. ....+-..+..|+..+..+++.+
T Consensus 98 ~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~---~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 98 GREESEEREELLEELEELKKELKELKKELEK---YSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666777777777777663 33344455666666665555444
No 188
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.95 E-value=2.1e+02 Score=23.27 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=19.5
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ 176 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq 176 (307)
+.-.+|+.||.++......|...+.++....+.-.
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666666655555544433
No 189
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.71 E-value=1.1e+02 Score=32.09 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
..|++.+.++..+++++|+.++.|+..-
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4566666677777888887777766653
No 190
>PRK10963 hypothetical protein; Provisional
Probab=38.41 E-value=1e+02 Score=28.38 Aligned_cols=8 Identities=13% Similarity=-0.122 Sum_probs=3.5
Q ss_pred ceEEeCCC
Q 021834 269 CVLFLPCR 276 (307)
Q Consensus 269 ~vlLlPCr 276 (307)
++.++|=+
T Consensus 171 S~AllpL~ 178 (223)
T PRK10963 171 SVAMSLLG 178 (223)
T ss_pred eeEEEecc
Confidence 44444433
No 191
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.99 E-value=1.6e+02 Score=31.95 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=30.6
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHH-HHHhHHHHHHHHHhHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQ--AWQRI-AQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q--~Wq~~-Ak~nEA~a~~Lr~~LqQv~ 197 (307)
.++.+.+|+.+.+.+.+|+.++.++..|.. .|.++ .+..+..++.|+.+|+.-.
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666654443 33332 2235566777777776543
No 192
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.33 E-value=2.8e+02 Score=24.08 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 134 KKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 134 ~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
+.+| ..-+|+.-.|+|++++.++..+..++++++...+...-+..+.=|.-...+-..++.
T Consensus 73 ~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 73 SNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444 677889999999999999999988888888887777666665544444444444443
No 193
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=37.23 E-value=6.8e+02 Score=28.58 Aligned_cols=100 Identities=21% Similarity=0.112 Sum_probs=65.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHH
Q 021834 86 FDSMPFSQSLALQAEKQRQEIDHYII---------SQNERLRLVLQEQRKQQLEVLLKKIEIKT-SALLRQKDEEIAKAT 155 (307)
Q Consensus 86 ~~s~~~s~~l~~~l~qQ~~EID~~i~---------~q~ErLR~~L~E~r~Rh~r~ll~avE~~~-~~rLReKe~Eier~~ 155 (307)
|+..+-++++..-...=+.|-|.|.+ .+.++|+...-+-+. +..|.+. -+-|-.|+.+.+++.
T Consensus 150 ~sgt~G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e-------~eke~a~yh~lLe~r~~~~~rl~ 222 (984)
T COG4717 150 FSGTSGSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDE-------AEKEYATYHKLLESRRAEHARLA 222 (984)
T ss_pred HhccCCCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 55555566666666667777777755 334444422111111 2222222 244778889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 021834 156 NRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKE 198 (307)
Q Consensus 156 rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~ 198 (307)
....||-+....+.+=.-+|-.....+|+- +|+|.+.
T Consensus 223 ~l~~elr~~~~~i~~~~~~v~l~~~lqE~k------~Leqel~ 259 (984)
T COG4717 223 ELRSELRADRDHIRALRDAVELWPRLQEWK------QLEQELT 259 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHhc
Confidence 888888888888888888888888888876 6777665
No 194
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.71 E-value=5e+02 Score=26.89 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 118 RLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 118 R~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
.++.. +|..+.+.=++.++ +++++...+.++..+..++|+..+.++..+--.-..--+..+..+..+..+|..+.
T Consensus 33 ~~a~~-~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 33 AAADD-KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHhHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q ss_pred HH
Q 021834 198 EK 199 (307)
Q Consensus 198 ~~ 199 (307)
.+
T Consensus 108 ~q 109 (420)
T COG4942 108 VQ 109 (420)
T ss_pred HH
No 195
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=36.65 E-value=1.3e+02 Score=26.49 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=7.4
Q ss_pred HHHHHHhhhHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLK 166 (307)
Q Consensus 150 Eier~~rrn~ELeErlr 166 (307)
+...+.+|..+|+.+|+
T Consensus 55 ~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 55 ELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 196
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=36.11 E-value=2.3e+02 Score=25.17 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 115 ERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 115 ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlr 166 (307)
-.|-..|-+-|-.|+|..|.. .+-..|++|.++|+.+++...+.++.|+
T Consensus 114 ~NmhhllNeyRPhQARetLi~---~me~Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 114 INMHHLLNEYRPHQARETLIM---MMEEQLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346677888899898876543 3447889999999999998888887763
No 197
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=35.75 E-value=4.1e+02 Score=30.11 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021834 97 LQAEKQRQEIDHYIISQNERLRLVLQEQRKQQL 129 (307)
Q Consensus 97 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~ 129 (307)
-.|.+++.+=++==+.+-|++|+.=+|.|+|--
T Consensus 221 e~La~~qe~eE~qkreeEE~~r~eeEEer~~ee 253 (1064)
T KOG1144|consen 221 EALAKRQEEEERQKREEEERLRREEEEERRREE 253 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888999999999998887654
No 198
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.54 E-value=2.9e+02 Score=31.31 Aligned_cols=12 Identities=25% Similarity=0.088 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 021834 129 LEVLLKKIEIKT 140 (307)
Q Consensus 129 ~r~ll~avE~~~ 140 (307)
.+.=+.++|-..
T Consensus 363 ~~~ql~~le~~~ 374 (980)
T KOG0980|consen 363 YENQLLALEGEL 374 (980)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 199
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.53 E-value=6.2e+02 Score=27.59 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=67.1
Q ss_pred cccccCCCCCCCCCCCCCCCccccccCCccccccCCCCCccc--ccchhhhhcCcchhHHHHHHHHhhhhcc----CCCC
Q 021834 16 LGLGFGYGINPLLGGGGSSPQDLIVDNACCGVGVNGSNGFCF--DMQPQKLRQHPQHMQQQQLQHQQQRNQN----FDSM 89 (307)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~q~----~~s~ 89 (307)
|-+-|||-|.-+||.|+|=.=|++.+=+...- +-.+= ++--..|.--+-|--+-+--.|-+.+|- =.|.
T Consensus 480 L~d~~G~~IV~vLsSGecI~w~Ll~~~h~~~~-----p~~~~~~d~Ev~eQE~~~~f~k~i~s~lqrsva~paL~~~~Ss 554 (741)
T KOG4460|consen 480 LPDILGPTIVCILSSGECIIWPLLSTVHPASP-----PLLCTREDVEVAEQETPDSFEKHIRSILQRSVANPALLKASSA 554 (741)
T ss_pred ccccCCceEEEEecCCcEEEEeeeccccccCC-----cccCchhHhHHHhhhcCCcHHHHHHHhhhhhcCChhccccccC
Confidence 34568999999999999876666554442211 11110 1111101112223334444444444444 1244
Q ss_pred CchHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHH
Q 021834 90 PFSQSLALQAEKQRQEI--DHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKK 167 (307)
Q Consensus 90 ~~s~~l~~~l~qQ~~EI--D~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrq 167 (307)
|.+++= .+|=-+-.++ .+||.-| +.+|.+ -+||.-.| .-.-+.-..+|-+.++|++.+.++.--|++|+..
T Consensus 555 P~~~E~-~~lL~~a~~vfrEqYi~~~-dlV~~e----~qrH~~~l-~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~ee 627 (741)
T KOG4460|consen 555 PPPEEC-LQLLSRATQVFREQYILKQ-DLVKEE----IQRHVKLL-CDQKKKQLQDLSYCREERKSLREMAERLADRYEE 627 (741)
T ss_pred CCcHHH-HHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 545542 1211111111 2333322 333433 34555443 3333334567777777777777777777777743
No 200
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=35.25 E-value=67 Score=34.86 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=11.8
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErlr 166 (307)
|.+++.+-.+|||++.++.+..-+++|
T Consensus 369 V~~~ia~~~AEIekmK~~Hak~m~k~k 395 (669)
T PF08549_consen 369 VAKKIADMNAEIEKMKARHAKRMAKFK 395 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444333333
No 201
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.03 E-value=2e+02 Score=27.36 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 021834 104 QEIDHYIISQNERLRLVLQEQRK 126 (307)
Q Consensus 104 ~EID~~i~~q~ErLR~~L~E~r~ 126 (307)
.++.. +..+.+.|+..+++.+.
T Consensus 67 ~~~~~-l~~el~~l~~e~~elkd 88 (238)
T PRK14143 67 ARLAQ-LEQELESLKQELEELNS 88 (238)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHH
Confidence 34443 33445555555555443
No 202
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=34.99 E-value=47 Score=32.12 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 155 TNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 155 ~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
..+..+|+|+|++|..|-++|..+.+
T Consensus 163 ~~~i~~Lee~I~rLk~E~~~W~~~l~ 188 (301)
T PF08202_consen 163 EENIAELEEKIKRLKEERQAWAQLLK 188 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45678999999999999999999984
No 203
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.84 E-value=2.7e+02 Score=24.90 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=11.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 021834 154 ATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 154 ~~rrn~ELeErlrqL~~E~Q~ 174 (307)
.+-.+..||+++++|..||..
T Consensus 156 L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666665543
No 204
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=34.83 E-value=13 Score=42.06 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021834 163 ILLKKLEMESQAWQRIAQE 181 (307)
Q Consensus 163 ErlrqL~~E~Q~Wq~~Ak~ 181 (307)
..++.+.-|...|.--.|.
T Consensus 1321 q~f~~~~~~~~~ww~~iKd 1339 (1525)
T COG5219 1321 QFFEKMVGEKEEWWVFLKD 1339 (1525)
T ss_pred HHHHHhcchHHHHHHHHHh
Confidence 4566777788888766664
No 205
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.47 E-value=3e+02 Score=26.26 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021834 94 SLALQAE 100 (307)
Q Consensus 94 ~l~~~l~ 100 (307)
++...|+
T Consensus 73 ~~~~~l~ 79 (233)
T KOG4739|consen 73 DLYRKLQ 79 (233)
T ss_pred HHHHHHH
Confidence 3333333
No 206
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=34.28 E-value=1e+02 Score=29.21 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
.+.++-...||++.+++.+|++|+++|....
T Consensus 112 ~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 112 RKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3444556679999999999999999987544
No 207
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=33.99 E-value=2.5e+02 Score=22.87 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHH
Q 021834 90 PFSQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEI 163 (307)
Q Consensus 90 ~~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeE 163 (307)
++-..+.+|.++|+.-|-+|+++. ++|. .+||+++..--+-+---.+.++.-..+..+
T Consensus 2 sVH~aItaH~~Kq~~~~k~F~~Le---------~~RE-------~aIeeav~~c~~g~pFs~d~IN~vT~~mN~ 59 (84)
T PF10752_consen 2 SVHKAITAHSQKQHAIIKQFLQLE---------QQRE-------AAIEEAVSLCKQGEPFSTDKINEVTKEMNE 59 (84)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-------HHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 344668899999999999997754 4454 567777766655555444445444444443
No 208
>PRK10698 phage shock protein PspA; Provisional
Probab=33.97 E-value=3.9e+02 Score=24.77 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDE--EIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 99 l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~--Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
++.+...++.| +.+..+|+.-|++.|.++..-+.+.--..+.+++++.-. ....+..+--.+|++|.++++++++
T Consensus 108 ~~~~~~~~~~L-~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 108 VTLVDETLARM-KKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 33344344432 456677777777777666533322222222233332211 1122333444577777777777666
No 209
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.73 E-value=7.7e+02 Score=28.16 Aligned_cols=68 Identities=18% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCcccccchhhhhcCcchhHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Q 021834 53 NGFCFDMQPQKLRQHPQHMQQQQLQHQQQRNQNFDSMPFSQSLALQAEKQRQEIDHYIISQ---NERLRLVLQEQRKQ 127 (307)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~s~~~s~~l~~~l~qQ~~EID~~i~~q---~ErLR~~L~E~r~R 127 (307)
+..+|++|.. +++|+-|+|-.-+++. ..|++-| ....+++.+++.||++-|..+ +.++|..+...+.+
T Consensus 802 A~~sFDvQK~-QRlh~~FsqFvg~HLa----vAF~~dP--E~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~ 872 (1480)
T COG3096 802 ATLSFDVQKT-QRLHQAFSRFIGSHLA----VAFEADP--EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEG 872 (1480)
T ss_pred HHHhccHHHH-HHHHHHHHHHHHHHHH----HhcCCCH--HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Confidence 4557888876 6676666665544443 3477655 888999999999999988764 56777777766543
No 210
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.56 E-value=3e+02 Score=24.85 Aligned_cols=34 Identities=35% Similarity=0.315 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 135 KIEIKTSALLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 135 avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
..+..|.=+|=+--.|||.+..+...||.+|+++
T Consensus 111 kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 111 KADDVVSYQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566667777777777777777663
No 211
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.49 E-value=5.1e+02 Score=26.40 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHH
Q 021834 117 LRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAW-------QRIAQENEAMVFSL 189 (307)
Q Consensus 117 LR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~W-------q~~Ak~nEA~a~~L 189 (307)
+|..++| |+.-+..|=..-+.-....++..+ =+.++..+...||+-++++..|++-- ..-+++.|--+..|
T Consensus 90 i~es~~e-~q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 90 IRESVEE-RQQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 3444444 333455554444554455555555 77888888888999888888888754 44566667788888
Q ss_pred HHhHHHHHH
Q 021834 190 NNSLEQLKE 198 (307)
Q Consensus 190 r~~LqQv~~ 198 (307)
...|...++
T Consensus 168 nrELaE~la 176 (401)
T PF06785_consen 168 NRELAEALA 176 (401)
T ss_pred HHHHHHHHH
Confidence 888877664
No 212
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.46 E-value=2.1e+02 Score=21.53 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=23.8
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
++..-|.++.+...|.++-|+++..|.+.-
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 667777777788888888888888888764
No 213
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=33.44 E-value=4.2e+02 Score=28.29 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
|++.++++.++.++...|+-+|+...--..+=...-+.-|+--+.|-+..+++
T Consensus 51 ~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 51 LGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555666666666666666554333222222222222233444444444444
No 214
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.36 E-value=6.9e+02 Score=27.54 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 021834 101 KQRQEIDHYI 110 (307)
Q Consensus 101 qQ~~EID~~i 110 (307)
....+++.+|
T Consensus 508 ~~~~~~~~li 517 (771)
T TIGR01069 508 EFKEEINVLI 517 (771)
T ss_pred hhHHHHHHHH
Confidence 3334454444
No 215
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=33.28 E-value=96 Score=32.37 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=19.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021834 155 TNRTMELEILLKKLEMESQAWQRIAQENEAMVFS 188 (307)
Q Consensus 155 ~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~ 188 (307)
+..|+||..++.+|+.+|+.-..-.+-+++++..
T Consensus 285 taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 285 TAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred ccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 4456666666666666666655555555555443
No 216
>PRK02224 chromosome segregation protein; Provisional
Probab=33.00 E-value=6.7e+02 Score=27.25 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSL 189 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~L 189 (307)
+-.+.+.++....+..+|++++..|..+.+.|...|..-++....+
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEA 570 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4445567777888888999999999999999998777655444443
No 217
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=32.75 E-value=22 Score=41.16 Aligned_cols=47 Identities=38% Similarity=0.439 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCccccccCCccccccCCCCCcccccchhhhhcCcchhHHHHHHHHhhhhccC
Q 021834 25 NPLLGGGGSSPQDLIVDNACCGVGVNGSNGFCFDMQPQKLRQHPQHMQQQQLQHQQQRNQNF 86 (307)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 86 (307)
-|++|-+++ |++.| .-+-+.|++.+|+.+-.-|||.|..||++.|.|
T Consensus 1836 pp~f~~~~s--------n~~a~-------~~s~~~q~~qqq~iq~lq~~q~lqqqqq~~qq~ 1882 (2131)
T KOG4369|consen 1836 PPLFARSQS--------NSVAN-------STSTNIQQQQQQQIQHLQQQQALQQQQQRIQQF 1882 (2131)
T ss_pred CCchhhccC--------CcccC-------cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 467665555 77653 236788887666666666777888777777774
No 218
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.67 E-value=3.7e+02 Score=27.27 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=7.2
Q ss_pred HHHHHHHhHHHHHHH
Q 021834 185 MVFSLNNSLEQLKEK 199 (307)
Q Consensus 185 ~a~~Lr~~LqQv~~~ 199 (307)
....+..+|.+.+..
T Consensus 88 ~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 88 ELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333445555555544
No 219
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=32.64 E-value=3.5e+02 Score=23.92 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 99 l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
+-.|..-.|+.=--|...+|..|-|.-.........+ -....+++..-+.|+++..++..+|+++.+..+.|...
T Consensus 31 ~~~q~~AsdqWa~YQAKsiK~~l~e~~~~~l~~~~~~-~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 31 VIAQAEASDQWAYYQAKSIKQHLAELAADLLELELAA-RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445556677777788888888877766554443322 45566677777888889999888999888888777665
No 220
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=32.01 E-value=13 Score=30.50 Aligned_cols=40 Identities=23% Similarity=0.599 Sum_probs=30.8
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPK 298 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i 298 (307)
.+....|..|..+.+--.. |. +|..|+..+..|+-|..+.
T Consensus 52 Lt~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 52 LTQPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred CCCCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCCC
Confidence 3556788888887765543 33 6999999999999998764
No 221
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.95 E-value=2.1e+02 Score=33.11 Aligned_cols=42 Identities=31% Similarity=0.230 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Q 021834 133 LKKIEIKTSALLRQKDEEIAKATN-RTMELEILLKKLEMESQA 174 (307)
Q Consensus 133 l~avE~~~~~rLReKe~Eier~~r-rn~ELeErlrqL~~E~Q~ 174 (307)
|...|..-.++|+||-+|.++.-+ .+..-||||+.++.=+++
T Consensus 380 L~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~e 422 (1714)
T KOG0241|consen 380 LEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQE 422 (1714)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555666666666665432 222334455444443333
No 222
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.92 E-value=5.9e+02 Score=28.08 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=3.3
Q ss_pred ccccCCc
Q 021834 38 LIVDNAC 44 (307)
Q Consensus 38 ~~~~~~~ 44 (307)
+++|-|.
T Consensus 411 vLlDE~~ 417 (782)
T PRK00409 411 VLFDELG 417 (782)
T ss_pred EEecCCC
Confidence 3455553
No 223
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=31.37 E-value=2e+02 Score=23.88 Aligned_cols=58 Identities=28% Similarity=0.362 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHH------HHHHHHhhhHHHHHHHHH
Q 021834 104 QEIDHYIISQNERLRLVLQEQRKQQL--EVLLKKIEIKTSALLRQKDE------EIAKATNRTMELEILLKK 167 (307)
Q Consensus 104 ~EID~~i~~q~ErLR~~L~E~r~Rh~--r~ll~avE~~~~~rLReKe~------Eier~~rrn~ELeErlrq 167 (307)
.-||+||.++ .+|+-+|-.|. .+++.-+| ++.--|+.|-. =+++++++-.||++.+|+
T Consensus 21 ~~IDsFv~Ln-----~glEskrGe~Fi~vsIlGFlE-GiLttLk~K~~deri~~Lle~Vr~~R~ele~~fRK 86 (97)
T PF11505_consen 21 EAIDSFVALN-----EGLESKRGEEFIKVSILGFLE-GILTTLKLKYEDERIGELLEKVRARREELEELFRK 86 (97)
T ss_dssp HHHHHHHHHT-----TTHHHHH-HHHHHHHHHHHHH-HHHHHHTTT---HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHh-----hhhhhhchHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4599999876 57888887774 34455444 45566776642 134445555666665554
No 224
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.34 E-value=4.6e+02 Score=28.19 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 021834 100 EKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ 176 (307)
Q Consensus 100 ~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq 176 (307)
++|-.++.+=|....++.-....|.|. ..+.+.. .-.....||-..|.+++........|++++..|..-...|.
T Consensus 345 ~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~-~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 345 NRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQA-SVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 344444444444444444444455532 2222222 22334566667777777777777788888777766556664
No 225
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=31.33 E-value=15 Score=28.02 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=8.3
Q ss_pred CCCCCCCccccce
Q 021834 289 DTCPVCLTPKKAS 301 (307)
Q Consensus 289 ~~CPvCR~~i~~s 301 (307)
.+||.|+.+|.-+
T Consensus 56 G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 56 GECPYCSSPISWS 68 (70)
T ss_dssp EE-TTT-SEEEGG
T ss_pred cCCcCCCCeeeEe
Confidence 3699999998643
No 226
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.21 E-value=1.9e+02 Score=26.92 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=12.8
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErl 165 (307)
++|.+-+.|||.+..+.+.|++++
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555554
No 227
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=31.14 E-value=31 Score=34.33 Aligned_cols=45 Identities=29% Similarity=0.596 Sum_probs=35.2
Q ss_pred ccccccccc----cccceEEeCCCCcccchhhHhcC----CCCCCCCccccceE
Q 021834 257 VMVCKGCNS----RDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKASI 302 (307)
Q Consensus 257 ~~~C~iC~~----~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~sV 302 (307)
...|.+|.+ .....+=.||+|. +|-.|.... ..||.||.+.....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 379999998 3456666788998 899998764 69999998776543
No 228
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.13 E-value=9e+02 Score=28.45 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 128 QLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 128 h~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
+++.....+....+..++.+..+++.+.++..+++..+.+...+-..=...-...|.-...|+..++.+
T Consensus 255 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 255 RYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555566666666666666666666665555555444444444444444445544443
No 229
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.96 E-value=35 Score=39.57 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=34.2
Q ss_pred ccccccccccccceEEeC-CCCcc----cchhhHhcC--C-----CCCCCCccccceEEE
Q 021834 257 VMVCKGCNSRDSCVLFLP-CRHLC----ACRACEAFL--D-----TCPVCLTPKKASIEA 304 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlP-CrHlc----lC~~C~~~l--~-----~CPvCR~~i~~sV~V 304 (307)
...|+-|...... .+-| |++.. .|..|...+ . .||.|..+.......
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 3799999986544 3667 88653 599998864 2 899999887766543
No 230
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.80 E-value=2.8e+02 Score=28.81 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=41.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhH
Q 021834 108 HYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTM 159 (307)
Q Consensus 108 ~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ 159 (307)
.|--.|+|||--.|.|.-++|.... +-+-+++++.+|..+.|.+|++-|..
T Consensus 126 ~~~~aq~erlvgeiaenerqhavem-aelsekia~emr~lede~~r~~mrtk 176 (637)
T KOG4421|consen 126 IFEEAQKERLVGEIAENERQHAVEM-AELSEKIADEMRDLEDETERIAMRTK 176 (637)
T ss_pred HHHHHHhhHHHHHHHhhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455799999999999998887665 55667788999999999999876544
No 231
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=30.77 E-value=6.5e+02 Score=26.37 Aligned_cols=89 Identities=22% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEI------KTSALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 99 l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~------~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
|++-+.|-|+++...+----.+|+-++..|-..+-.-+|. .+-..=|+--+|++.+.|...-|-|...|-+.|+
T Consensus 365 LekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEn 444 (593)
T KOG4807|consen 365 LEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLEN 444 (593)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555443333333333333333332222222 2222234555667777776666767666666666
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 021834 173 QAWQRIAQENEAMVFSLN 190 (307)
Q Consensus 173 Q~Wq~~Ak~nEA~a~~Lr 190 (307)
-+ +|+.-|+--.+||
T Consensus 445 ah---LaqalEaerqaLR 459 (593)
T KOG4807|consen 445 AH---LAQALEAERQALR 459 (593)
T ss_pred HH---HHHHHHHHHHHHH
Confidence 65 4444444444433
No 232
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.61 E-value=4.2e+02 Score=24.18 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=25.8
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKE 198 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~ 198 (307)
++++|.+|..+.++..+|++....+..+.+ +.++.+..|++..+.+.+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke-------~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKE-------AKDKEISRLKSEAEALKE 173 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665544443333 333555555555555444
No 233
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=30.53 E-value=1.7e+02 Score=26.72 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=14.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021834 153 KATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLN 190 (307)
Q Consensus 153 r~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr 190 (307)
+.+.||.+|++++..|- ..|+.||++...++
T Consensus 51 ~LR~~~~~L~~~l~~Li-------~~Ar~Ne~~~~~~~ 81 (225)
T PF04340_consen 51 RLRERNRQLEEQLEELI-------ENARENEAIFQRLH 81 (225)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33344445555554443 24555555554444
No 234
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.32 E-value=7.7e+02 Score=27.10 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 87 DSMPFSQSLALQAEKQRQEI-DHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 87 ~s~~~s~~l~~~l~qQ~~EI-D~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
.+.+.+++-...|-+--.-+ ++||.-+ ++.|.+|+++-+ +|...-+.-.++|.+..++++.++.+...|.||+
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~-~~ar~ei~~rv~-----~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~ 602 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQ-DLAREEIQRRVK-----LLKQQKEQQLKELQELQEERKSLRESAEKLAERY 602 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 021834 166 KKLEMESQAWQRIAQENEAMVFSLNNSL 193 (307)
Q Consensus 166 rqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~L 193 (307)
+.+..--..=..+++. +...++..+
T Consensus 603 e~a~d~Qe~L~~R~~~---vl~~l~~~~ 627 (717)
T PF10168_consen 603 EEAKDKQEKLMKRVDR---VLQLLNSQL 627 (717)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhccC
No 235
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=29.79 E-value=5.4e+02 Score=25.13 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
.|-.+|++++..| +-.+-++...-+++|+--...|=.+|. .+..+|-+....-.+....|.+|-++++.+..-..
T Consensus 78 ~LCRELQk~Nk~l----keE~~~~~~eee~kR~el~~kFq~~L~-dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 78 SLCRELQKQNKKL----KEESKRRAREEEEKRKELSEKFQATLK-DIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665433 333333334444444322222222221 34456667888888889999999999998877666
Q ss_pred ----HHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 174 ----AWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 174 ----~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
.|..+-+..|-.+..+.+.|++....
T Consensus 153 ~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~ 182 (309)
T PF09728_consen 153 LREEHFEKLLKQKELEVQLAEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999886543
No 236
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=29.69 E-value=3.2e+02 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=10.3
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 021834 105 EIDHYIISQNERLRLVLQ 122 (307)
Q Consensus 105 EID~~i~~q~ErLR~~L~ 122 (307)
++|..|.-...+.+....
T Consensus 12 ev~~~i~k~~~~~~~~~~ 29 (125)
T PF14265_consen 12 EVDKIIKKRLARWEKKQK 29 (125)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 477776655555554443
No 237
>PRK09039 hypothetical protein; Validated
Probab=29.64 E-value=5.6e+02 Score=25.29 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=43.5
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 147 KDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 147 Ke~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
+.-+|.+++.....|.+++.+|..+-.+=...-++.++-...|...|+.+++.
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677888888888999998888887777788888889999999998866
No 238
>PLN02436 cellulose synthase A
Probab=29.62 E-value=34 Score=38.94 Aligned_cols=44 Identities=27% Similarity=0.651 Sum_probs=32.4
Q ss_pred ccccccccccc----ccceEEeCCCC--cccchhhHhc-----CCCCCCCCcccc
Q 021834 256 MVMVCKGCNSR----DSCVLFLPCRH--LCACRACEAF-----LDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~----~a~vlLlPCrH--lclC~~C~~~-----l~~CPvCR~~i~ 299 (307)
....|.||.|. ...=+|+.|.. +.+|..|..- -..||.|++..+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 44599999985 23447788853 2389999854 379999998766
No 239
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.61 E-value=1.8e+02 Score=21.43 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=27.2
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
..+.+.+.+++....+|.+|++.++.|......=..+|+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 456677888888888888888888888333333344555
No 240
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.58 E-value=1.6e+02 Score=28.00 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 152 AKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 152 er~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
+|.+.||.|||+.++++..+.+.-+.-... ||+.--++.+.
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEK 129 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVES-------LRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
No 241
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=29.53 E-value=9.5e+02 Score=27.93 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021834 92 SQSLALQAEKQRQEIDHYIISQNERLR 118 (307)
Q Consensus 92 s~~l~~~l~qQ~~EID~~i~~q~ErLR 118 (307)
..|+..+|.+|+.++-++..-|.|=.|
T Consensus 878 ~ed~~~~l~~qQe~~a~l~~sQ~el~~ 904 (1283)
T KOG1916|consen 878 MEDLLPQLLAQQETMAQLMASQKELQR 904 (1283)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 477889999999999888877765433
No 242
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.50 E-value=5.7e+02 Score=25.35 Aligned_cols=47 Identities=36% Similarity=0.546 Sum_probs=32.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHH----HHhhhHHHHHHHHHHH
Q 021834 119 LVLQEQRK--QQLEVLLKKIEIKTSALLRQKDEEIAK----ATNRTMELEILLKKLE 169 (307)
Q Consensus 119 ~~L~E~r~--Rh~r~ll~avE~~~~~rLReKe~Eier----~~rrn~ELeErlrqL~ 169 (307)
.+|.|+|+ +|.+.+|..| -..|-+||.-|.+ |+-.|..||-.|..++
T Consensus 117 LALKEARkEIkQLkQvieTm----rssL~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 117 LALKEARKEIKQLKQVIETM----RSSLAEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 46777776 3444444433 3456688888887 6888889998886654
No 243
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.44 E-value=7.6e+02 Score=26.79 Aligned_cols=93 Identities=26% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHH------HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH------HHhhHHHHHHH-----------
Q 021834 104 QEIDHY------IISQNERLRLVLQEQR------KQQLEVLLKKIEIKTSAL------LRQKDEEIAKA----------- 154 (307)
Q Consensus 104 ~EID~~------i~~q~ErLR~~L~E~r------~Rh~r~ll~avE~~~~~r------LReKe~Eier~----------- 154 (307)
.|||.| |+.+...|+..+.|+- +-|+.+|-++++..-.+. |-+|.+|+-++
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 155 --TNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 155 --~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
.+-+-|.-+++++|+.|.--..+..+--.|.+.-|=.-|.+|
T Consensus 411 ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 411 DDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred HhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 244
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=29.43 E-value=80 Score=28.09 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYIISQ-----NERLRLVLQEQRKQQL 129 (307)
Q Consensus 99 l~qQ~~EID~~i~~q-----~ErLR~~L~E~r~Rh~ 129 (307)
++.+-.+|-..|..| .-||+.+++-+|+||.
T Consensus 47 le~~P~~v~~WI~~hm~p~l~nklkQaIRArRKRhF 82 (150)
T PRK05097 47 LENEPVKVLEWIDKHMNPELVNRMKQTIRARRKRHF 82 (150)
T ss_pred hccCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 344444555555544 4688888888888886
No 245
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.40 E-value=8.5e+02 Score=27.76 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILL 165 (307)
Q Consensus 148 e~Eier~~rrn~ELeErl 165 (307)
+.|++.++-+..+|.+||
T Consensus 443 ~~eletLn~k~qqls~kl 460 (1118)
T KOG1029|consen 443 QQELETLNFKLQQLSGKL 460 (1118)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 334444444555555444
No 246
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=29.31 E-value=2.3e+02 Score=27.87 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=29.5
Q ss_pred CCCCCchHHHHHHHHHHHHHH--HHHHHHh------------HHHHHHHHHHHHHHH
Q 021834 86 FDSMPFSQSLALQAEKQRQEI--DHYIISQ------------NERLRLVLQEQRKQQ 128 (307)
Q Consensus 86 ~~s~~~s~~l~~~l~qQ~~EI--D~~i~~q------------~ErLR~~L~E~r~Rh 128 (307)
-++.++++.++..+..|-.|+ |.|-|.+ .|+|-+.|.|.+.|-
T Consensus 151 ~~~~~~aDgv~~FihHQivElARDCL~KS~~~lITs~YF~ElsEnLekLl~ea~erS 207 (282)
T PF08926_consen 151 DNVLPLADGVLRFIHHQIVELARDCLQKSREGLITSRYFYELSENLEKLLQEAHERS 207 (282)
T ss_dssp TTTB--S-HHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcccCC
Confidence 445678899999999999999 9888877 455555555555544
No 247
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.24 E-value=4.8e+02 Score=25.39 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=19.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQAWQRIA 179 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~Wq~~A 179 (307)
++.+.-...+|+|+-+.|..|++.-+.+-
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445588888888888888866543
No 248
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.67 E-value=4.2e+02 Score=26.79 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=11.5
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHH
Q 021834 147 KDEEIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 147 Ke~Eier~~rrn~ELeErlrqL~~ 170 (307)
+.+.+.++.+...+|.++++++..
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~ 396 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKE 396 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455544555555544443
No 249
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.61 E-value=3.3e+02 Score=27.54 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=9.0
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLE 169 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~ 169 (307)
.+.+..+..+|.++++.+.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 71 IEEIKKELKELKEELTELS 89 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444445555554443
No 250
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=28.55 E-value=32 Score=28.83 Aligned_cols=44 Identities=25% Similarity=0.599 Sum_probs=27.9
Q ss_pred ccccccccccceEEeCCCC------cccchhhHhcC--------CCCCCCCccccceE
Q 021834 259 VCKGCNSRDSCVLFLPCRH------LCACRACEAFL--------DTCPVCLTPKKASI 302 (307)
Q Consensus 259 ~C~iC~~~~a~vlLlPCrH------lclC~~C~~~l--------~~CPvCR~~i~~sV 302 (307)
.|--|.+.-.+--|.|=++ .++|..|-..+ ..||.|+++++..-
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~C 94 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPGC 94 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCccc
Confidence 4555555555555555543 34577776543 57999999998653
No 251
>PRK14127 cell division protein GpsB; Provisional
Probab=28.54 E-value=1.2e+02 Score=25.50 Aligned_cols=28 Identities=11% Similarity=0.066 Sum_probs=12.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQAWQRI 178 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~Wq~~ 178 (307)
++...+.+.+|.+++++|..+...|+..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444443
No 252
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.50 E-value=5.9e+02 Score=25.16 Aligned_cols=19 Identities=37% Similarity=0.302 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 021834 156 NRTMELEILLKKLEMESQA 174 (307)
Q Consensus 156 rrn~ELeErlrqL~~E~Q~ 174 (307)
....+|||++|+|+.|-..
T Consensus 116 ~l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 116 NLISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457899999999988776
No 253
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=28.44 E-value=3.7e+02 Score=25.12 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 105 EIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEI---------KTSALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 105 EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~---------~~~~rLReKe~Eier~~rrn~ELeErlr 166 (307)
.++. ++.+.|+||..|..-|+++-.....-=.+ +|++==|+.-.---.|-+||..||..|+
T Consensus 132 ~~~~-l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 132 ELGS-LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred cchh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444 45788999999998887766544432221 2222222222223346777888877765
No 254
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.36 E-value=1e+02 Score=27.41 Aligned_cols=12 Identities=0% Similarity=0.005 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYI 110 (307)
Q Consensus 99 l~qQ~~EID~~i 110 (307)
+++=+.|++++.
T Consensus 36 ~~~L~~El~~L~ 47 (160)
T PRK06342 36 LKALEDQLAQAR 47 (160)
T ss_pred HHHHHHHHHHHH
Confidence 555566776653
No 255
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=28.10 E-value=1.4e+02 Score=31.91 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 116 RLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 116 rLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
|+-+....+||+.+..=|. .||.+...|-|.+++.|+.|..||.-|..|++.-
T Consensus 290 ResA~~SRkKKKEy~~~Le-------~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 290 RESACQSRKKKKEYMLGLE-------ARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 4556666666655443333 6889999999999999999999999999998763
No 256
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.09 E-value=1.1e+02 Score=28.11 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 147 KDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 147 Ke~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
.+.+|+.+.++..+|.+++.++.+|-+..++++.
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666665555544
No 257
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.03 E-value=3.8e+02 Score=22.84 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHH
Q 021834 88 SMPFSQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKK 167 (307)
Q Consensus 88 s~~~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrq 167 (307)
++.+-.-|.+.|.+-..|+..+ +.+..+|.. .|..-...|++.. ..-+++.....+..+|+..++.
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l-~~el~~l~~----~r~~l~~Eiv~l~---------~~~e~~~~~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASL-QEELARLEA----ERDELREEIVKLM---------EENEELRALKKEVEELEQELEE 79 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445677787777787653 444444433 3444444555433 3344455555555566666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 021834 168 LEMESQAWQRIAQENEAMVFSLNNSLEQLKE 198 (307)
Q Consensus 168 L~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~ 198 (307)
|....++--.+..+..--+.-|++-++.|++
T Consensus 80 l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 80 LQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6666666666777777788888888888764
No 258
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=27.77 E-value=26 Score=25.54 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=6.0
Q ss_pred cccccccccccc
Q 021834 255 KMVMVCKGCNSR 266 (307)
Q Consensus 255 ~~~~~C~iC~~~ 266 (307)
+....|.+|...
T Consensus 32 p~~w~CP~C~a~ 43 (50)
T cd00730 32 PDDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCCc
Confidence 444555555443
No 259
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.49 E-value=7.5e+02 Score=26.10 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 156 NRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 156 rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
..+..+.-+..++....+.--..-++.|..++.|..+|-.++
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 333344445555555555545556677889999998887765
No 260
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=27.47 E-value=8.4e+02 Score=26.63 Aligned_cols=32 Identities=28% Similarity=0.144 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021834 160 ELEILLKKLEMESQAWQRIAQENEAMVFSLNN 191 (307)
Q Consensus 160 ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~ 191 (307)
+.-|+.+-|-.|.+.-+..-+..|..+..|..
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666633
No 261
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.35 E-value=4.8e+02 Score=23.84 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 160 ELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 160 ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
+..+.+..+..+-..++.....-+.....-|..|-+.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 116 SRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333444444444444433
No 262
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.26 E-value=2.1e+02 Score=27.04 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQ-QLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~R-h~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
++++.+|.++-+ |++ |.+.|- ++.+-. +.+..|+-+|.. +++.+.||.+||+++..|.
T Consensus 7 ~~VadyL~~hPe----Ff~-~h~~Ll---~~L~lph~~~~tVSLve~q-----------l~r~R~~~~~Le~~l~~L~ 65 (218)
T COG3159 7 EDVADYLRQHPE----FFI-QHAELL---EELRLPHPVAGTVSLVERQ-----------LARLRNRIRELEEELAALM 65 (218)
T ss_pred HHHHHHHHhCcH----HHH-hCHHHH---HHcCCCCCCCCeeehHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 456666665542 222 233332 233333 455666666664 4455566667776665443
No 263
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=27.02 E-value=6.1e+02 Score=26.67 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021834 109 YIISQNERLRLVLQEQRKQQLEVLLKKIEIK 139 (307)
Q Consensus 109 ~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~ 139 (307)
+|+.+.||||.-|..+.+.|...+....++.
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655555444443
No 264
>PHA01750 hypothetical protein
Probab=26.98 E-value=2.5e+02 Score=22.12 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 132 LLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 132 ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
|=.||++-+-+-|--.--||+..++|.-+|+++++.+
T Consensus 32 lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 32 LKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3355555555555555566666666666666665543
No 265
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=26.91 E-value=60 Score=33.43 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 133 LKKIEIKTSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 133 l~avE~~~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
|.|||++ .|||+||.|.-+...--.||.++|
T Consensus 373 LeAIErA--EklR~kEle~r~~d~Fq~ELg~FV 403 (426)
T smart00806 373 LEAIERA--EKLREKELEYRRVDEFEKELGNFV 403 (426)
T ss_pred HHHHHHH--HHHHHHHHHhccccHHHHHHHHHh
Confidence 3566655 666666666555555555555444
No 266
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=26.90 E-value=1.9e+02 Score=25.43 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=7.7
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKK 167 (307)
Q Consensus 150 Eier~~rrn~ELeErlrq 167 (307)
|-..++++-++|+.|++.
T Consensus 46 eY~aak~~~~~le~rI~~ 63 (156)
T TIGR01461 46 DYQYGKKRLREIDRRVRF 63 (156)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 267
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.76 E-value=3.5e+02 Score=26.81 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 021834 92 SQSLALQAEKQRQEIDHYIIS 112 (307)
Q Consensus 92 s~~l~~~l~qQ~~EID~~i~~ 112 (307)
..+-..++-+=-.+||.+.++
T Consensus 50 c~~rv~qmtkty~Didavt~l 70 (306)
T PF04849_consen 50 CSDRVSQMTKTYNDIDAVTRL 70 (306)
T ss_pred cccchhhhhcchhhHHHHHHH
Confidence 444455566656677765543
No 268
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=26.74 E-value=14 Score=35.75 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=30.9
Q ss_pred cccccccccc----cccceEEeCCCCcccchhhHhcC----CCCCCCCccccceE
Q 021834 256 MVMVCKGCNS----RDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKASI 302 (307)
Q Consensus 256 ~~~~C~iC~~----~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~sV 302 (307)
...-|++|.+ -...+-.+||+|.-- ..|...+ -+||+|.. +....
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHH
Confidence 3445888875 456777889999874 5555432 69999988 54433
No 269
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.63 E-value=28 Score=22.81 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=11.9
Q ss_pred CCCCCCCCccccceEE
Q 021834 288 LDTCPVCLTPKKASIE 303 (307)
Q Consensus 288 l~~CPvCR~~i~~sV~ 303 (307)
-..||+|..+....+.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4689999888776654
No 270
>PF14282 FlxA: FlxA-like protein
Probab=26.47 E-value=3.5e+02 Score=22.21 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH-HH---HHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEM-ES---QAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~-E~---Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
+..|+++.++...|.+.|+.|.. +. ..=+...+.=.+-+..|.+.|.++...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999988887 22 222334444445566666666665543
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.40 E-value=4.7e+02 Score=27.31 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 96 ALQAEKQRQEIDHYIISQNERLR--LVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 96 ~~~l~qQ~~EID~~i~~q~ErLR--~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
.+.|.|.+.|+|+-++.-..-|+ +++-+ |.-++.++..++......|+.-|-- +.+--|+.+|+-.++-+.-
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~~m~~~gd-rmgqv~al~g~Akc~~~~r~~~k~~-----~Crale~n~r~levA~~IG 325 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMGTMASLGD-RMGQVEALDGAAKCLETLRLQNKIC-----NCRALEFNTRLLEVASSIG 325 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhccc-----ccchhHHHHHHHHHHHHhh
Confidence 35678888888886664333332 33333 4456777777777776666665521 1344455555533333332
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHhhhccCCCCCcccccccchhhhhhhhhhhcccccCCCCCcccCCchhhHHhhhc
Q 021834 174 AWQRIAQENEAMVFSLNNSLEQLKEKAFCCFNNGVEDAESCCDVEEEETEQNRVIGIGFGESNNNYNYKGAAETEQEQRS 253 (307)
Q Consensus 174 ~Wq~~Ak~nEA~a~~Lr~~LqQv~~~~~~~~~~~~dDAeScc~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~~~~ 253 (307)
+=. ++--+|-.|.-+..+. + .+|- ..++..+ +.+. .
T Consensus 326 ~K~--------~vlK~hcrla~iYrs~---g---l~d~--------~~~h~~r-----------------a~~~-----~ 361 (518)
T KOG1941|consen 326 AKL--------SVLKLHCRLASIYRSK---G---LQDE--------LRAHVVR-----------------AHEC-----V 361 (518)
T ss_pred hhH--------HHHHHHHHHHHHHHhc---c---chhH--------HHHHHHH-----------------HHHH-----H
Confidence 211 2333344444433222 0 1110 1111000 0111 1
Q ss_pred cccccccccccc----cccceEEeCCCCcccchhhHhc------CCCCCCCCcc
Q 021834 254 TKMVMVCKGCNS----RDSCVLFLPCRHLCACRACEAF------LDTCPVCLTP 297 (307)
Q Consensus 254 ~~~~~~C~iC~~----~~a~vlLlPCrHlclC~~C~~~------l~~CPvCR~~ 297 (307)
......|-.|.+ ++.+.=-+||-|. +=..|... -.+||-||.-
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHH
Confidence 223468888976 5667777899998 46677752 3899999943
No 272
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=26.30 E-value=76 Score=24.63 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=16.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
|..-.++|.||||.+++ ++|.|.
T Consensus 28 i~h~~~knseleeWl~~-e~E~~~ 50 (65)
T PF08599_consen 28 IAHHAGKNSELEEWLRQ-EMEEQR 50 (65)
T ss_pred hhccccccccHHHHHHH-HHHHHH
Confidence 44557899999999976 455554
No 273
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=26.16 E-value=29 Score=35.15 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=16.2
Q ss_pred cccccccccccceEEeCCCCcccchhhHh
Q 021834 258 MVCKGCNSRDSCVLFLPCRHLCACRACEA 286 (307)
Q Consensus 258 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~ 286 (307)
..|++|.++.+..-. -+-.|+.|..
T Consensus 16 ElCPVCGDkVSGYHY----GLLTCESCKG 40 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHY----GLLTCESCKG 40 (475)
T ss_pred cccccccCcccccee----eeeehhhhhh
Confidence 489999999875321 1225777753
No 274
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.88 E-value=1.5e+02 Score=28.17 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHHHHH
Q 021834 112 SQNERLRLVLQEQRK 126 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~ 126 (307)
.+.+.++..+.+.+.
T Consensus 84 ~~l~~le~e~~e~kd 98 (227)
T PRK14157 84 TPLGQAKKEAAEYLE 98 (227)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 275
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.86 E-value=5e+02 Score=23.47 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.6
Q ss_pred HHHHhhHHHHH
Q 021834 142 ALLRQKDEEIA 152 (307)
Q Consensus 142 ~rLReKe~Eie 152 (307)
+||-+--+||+
T Consensus 66 krLa~ireeLE 76 (159)
T PF04949_consen 66 KRLAEIREELE 76 (159)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 276
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.66 E-value=3.7e+02 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=9.1
Q ss_pred HHHHHHhHHHHHHHHHH
Q 021834 107 DHYIISQNERLRLVLQE 123 (307)
Q Consensus 107 D~~i~~q~ErLR~~L~E 123 (307)
...+....+.++.+++.
T Consensus 127 ~~~~~~~~~~~~~G~~~ 143 (176)
T PF12999_consen 127 REELEEEEEIYKEGLKI 143 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555566666654
No 277
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=25.60 E-value=2.8e+02 Score=30.23 Aligned_cols=10 Identities=10% Similarity=0.013 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 021834 134 KKIEIKTSAL 143 (307)
Q Consensus 134 ~avE~~~~~r 143 (307)
.++|+.-..|
T Consensus 641 a~~ERee~eR 650 (940)
T KOG4661|consen 641 AAVEREELER 650 (940)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 278
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=25.28 E-value=2.3e+02 Score=24.64 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAK 153 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier 153 (307)
++...|..=-.|+|++.+...+ +--.++....-|.-+|..+..++-|-++.||+
T Consensus 71 Eis~~L~~vieELdqi~~~~~~------~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 71 EISPNLRYVIEELDQITGREQA------EVDLKQKILDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred hccHHHHHHHHHHHHHHcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666788888773322 22245566677788899999888888888775
No 279
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=25.22 E-value=34 Score=34.65 Aligned_cols=42 Identities=24% Similarity=0.568 Sum_probs=29.7
Q ss_pred cccccccc----ccceEEeCCCCcccchhhHhcC-----CCCCCCCccccce
Q 021834 259 VCKGCNSR----DSCVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKAS 301 (307)
Q Consensus 259 ~C~iC~~~----~a~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~s 301 (307)
.|..|.+. ..+..-.||+-. +|..|...+ ..||.||...+.-
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhcccc
Confidence 49999974 334444566655 699998764 6999999876543
No 280
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=25.18 E-value=1.1e+02 Score=24.17 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
.+|+|.=.|.+|+.+.-.+-.|.|++.++- ..|...-...+|+++.|-..|..+
T Consensus 17 ~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL---~~W~~~~g~~~At~~~L~~aLr~~ 70 (80)
T cd08313 17 FVRRLGLSDNEIERVELDHRRCRDAQYQML---KVWKERGPRPYATLQHLLSVLRDM 70 (80)
T ss_pred HHHHcCCCHHHHHHHHHhCCChHHHHHHHH---HHHHHhcCCCcchHHHHHHHHHHc
Confidence 568999999999999998888888887774 679887665578888877777663
No 281
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=25.06 E-value=38 Score=30.58 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=14.8
Q ss_pred cCCCCCCCCccccceEEE
Q 021834 287 FLDTCPVCLTPKKASIEA 304 (307)
Q Consensus 287 ~l~~CPvCR~~i~~sV~V 304 (307)
.--.||+||..|.+.+.|
T Consensus 79 ~~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVV 96 (162)
T ss_pred ccccCccccCceeceEEc
Confidence 345899999999998876
No 282
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.71 E-value=4.9e+02 Score=23.00 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=4.6
Q ss_pred HHHHHHHhHHH
Q 021834 185 MVFSLNNSLEQ 195 (307)
Q Consensus 185 ~a~~Lr~~LqQ 195 (307)
-+.+|+.+.+.
T Consensus 176 ~~~~LkkQ~~~ 186 (192)
T PF05529_consen 176 EIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 283
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=24.67 E-value=2.4e+02 Score=19.45 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 163 ILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 163 ErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
.+++.+..=|+-|+.-=.+.|+-|-+|.+.|..
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 467777778999999999999999999988754
No 284
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.61 E-value=3.2e+02 Score=26.12 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=8.9
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 021834 155 TNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 155 ~rrn~ELeErlrqL~~E~Q~ 174 (307)
.|.|..|..++.+|..|...
T Consensus 228 eken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 228 EKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 285
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.58 E-value=47 Score=33.41 Aligned_cols=31 Identities=29% Similarity=0.665 Sum_probs=27.2
Q ss_pred ccccccccccccccceEEeCCC--CcccchhhHh
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCR--HLCACRACEA 286 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCr--HlclC~~C~~ 286 (307)
.....|..|-+....|+.+||. |. .|-.|..
T Consensus 219 ~~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr 251 (446)
T KOG0006|consen 219 SRNITCITCTDVRSPVLVFQCNSRHV-TCLDCFR 251 (446)
T ss_pred cccceeEEecCCccceEEEecCCcee-ehHHhhh
Confidence 4567999999999999999999 77 6999876
No 286
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.57 E-value=6.4e+02 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHH
Q 021834 173 QAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 173 Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
++|+..-+..+.....|...|..
T Consensus 368 ~a~~~~L~~~~~rL~~l~~rL~~ 390 (438)
T PRK00286 368 RAMRRQLKRKRQRLEALAQQLEA 390 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55777777777777777777764
No 287
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.49 E-value=27 Score=25.05 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=3.8
Q ss_pred CCCCCCcccc
Q 021834 290 TCPVCLTPKK 299 (307)
Q Consensus 290 ~CPvCR~~i~ 299 (307)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 5677766554
No 288
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.43 E-value=7.1e+02 Score=24.74 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
.-.+||.+...+..+|+.|++++.+|+..-+.....-=.+=..|.+.|..+.++
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888776655443333444566666655544
No 289
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.37 E-value=3.5e+02 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 021834 88 SMPFSQSLALQAEKQRQEIDHY 109 (307)
Q Consensus 88 s~~~s~~l~~~l~qQ~~EID~~ 109 (307)
|+++...|+.-|..-.+|++++
T Consensus 8 s~~p~~~Ls~vl~~LqDE~~hm 29 (79)
T PF06657_consen 8 SQSPGEALSEVLKALQDEFGHM 29 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 4556677888899999999885
No 290
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=24.06 E-value=3.2e+02 Score=31.49 Aligned_cols=7 Identities=14% Similarity=-0.116 Sum_probs=3.3
Q ss_pred CCCCCch
Q 021834 86 FDSMPFS 92 (307)
Q Consensus 86 ~~s~~~s 92 (307)
|++...|
T Consensus 134 F~~p~~p 140 (1123)
T PRK11448 134 FVPPEDP 140 (1123)
T ss_pred CCCCCCC
Confidence 5544443
No 291
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=23.97 E-value=7.8e+02 Score=29.28 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=29.5
Q ss_pred cccccccccccccc-ceEEeCCCCcccchhhHhc----CCCCCCCCcccc
Q 021834 255 KMVMVCKGCNSRDS-CVLFLPCRHLCACRACEAF----LDTCPVCLTPKK 299 (307)
Q Consensus 255 ~~~~~C~iC~~~~a-~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~ 299 (307)
.....|.+|.+--. --.+.-|+|.. |..|... -..||+|...+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhhh
Confidence 34559999997443 23334599984 6677643 379999986544
No 292
>PHA02107 hypothetical protein
Probab=23.87 E-value=1.7e+02 Score=26.93 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 132 LLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 132 ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
+++-+=--.++||.|-|+||.++.-+-.|.|+-++.+
T Consensus 174 ~iRG~~~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~I 210 (216)
T PHA02107 174 LVRGVFHFASVRISEIDEEIKELQARRKEIEDNIKSI 210 (216)
T ss_pred HHHHHhhhhhhhHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444567999999999999998889999888765
No 293
>PF13166 AAA_13: AAA domain
Probab=23.82 E-value=8.7e+02 Score=25.58 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
+++...+.+|..+.+....++..++.+..+...=+......+..+..+...|..+
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4445555566666666666666666666665555555555567777777777664
No 294
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=23.72 E-value=5.5e+02 Score=23.21 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=21.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceE
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASI 302 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV 302 (307)
...|++| ||. |.. ..-..||+|.+++....
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFE 163 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhh
Confidence 6778876 554 333 44589999999887654
No 295
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=23.71 E-value=15 Score=36.57 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=35.7
Q ss_pred cccccccccccccccce-EEeCCCCcccchhhHhc----CCCCCCCCccccceE
Q 021834 254 TKMVMVCKGCNSRDSCV-LFLPCRHLCACRACEAF----LDTCPVCLTPKKASI 302 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~v-lLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 302 (307)
.....+|.+|..=-.+. .+.-|-|- +|+.|--+ ...||.|...|..+.
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 34567999998755432 33458888 69999754 589999999998774
No 296
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=23.69 E-value=45 Score=26.86 Aligned_cols=44 Identities=27% Similarity=0.617 Sum_probs=17.8
Q ss_pred cccccccccccc----cceEEeCCCC--cccchhhHh-----cCCCCCCCCcccc
Q 021834 256 MVMVCKGCNSRD----SCVLFLPCRH--LCACRACEA-----FLDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~~----a~vlLlPCrH--lclC~~C~~-----~l~~CPvCR~~i~ 299 (307)
+...|.||.+.- -.-+|+-|.. +.+|+.|.. ..+.||.|+++.+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 456899998732 2335555643 336999974 2589999997754
No 297
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=23.69 E-value=35 Score=30.78 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=27.5
Q ss_pred cccccccccccccccceEEeCCCCcccc----hhhHh------cCCCCCCCCcccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCAC----RACEA------FLDTCPVCLTPKK 299 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC----~~C~~------~l~~CPvCR~~i~ 299 (307)
....+.|.||++.... ...||+=.-.- .+|-. +-..||+|..+.+
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4556799999988653 44577511100 12432 2479999998764
No 298
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.56 E-value=5e+02 Score=22.65 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=5.8
Q ss_pred hhHHHHHHHHhhhHHH
Q 021834 146 QKDEEIAKATNRTMEL 161 (307)
Q Consensus 146 eKe~Eier~~rrn~EL 161 (307)
.-+++++.+.+...+|
T Consensus 134 ~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 134 SLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 299
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=23.40 E-value=84 Score=32.97 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=12.2
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
+...|.+||.||+++.+ ||..+|
T Consensus 401 ~~e~i~~kE~eLe~L~~---elDdkv 423 (492)
T PF06273_consen 401 LREEISQKEKELEKLTR---ELDDKV 423 (492)
T ss_pred HHHHHHHHHHHHHHHHH---Hhhccc
Confidence 34445555555555554 555555
No 300
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=23.32 E-value=2.8e+02 Score=23.41 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHH---HHHHHhhH--HHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 128 QLEVLLKKIEIKT---SALLRQKD--EEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 128 h~r~ll~avE~~~---~~rLReKe--~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
+......++++-+ -++||+-. +.+|+--++..|++|.||++.+..
T Consensus 53 Q~~q~~e~~~Rev~~L~~~L~~~~~~e~LE~~M~kaqe~~e~Lrs~v~p~ 102 (106)
T PF03528_consen 53 QWQQYRESEEREVAKLQRRLREGQELENLEKSMKKAQEDEEKLRSVVMPM 102 (106)
T ss_dssp ---------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 3333444444443 24677766 889999999999999999987654
No 301
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=23.22 E-value=4.7e+02 Score=22.27 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=25.3
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVF 187 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~ 187 (307)
|=+++-.=...+.-|..||| ++..|.++|+.+-.+-+.++.
T Consensus 78 R~~~~q~lq~~I~Ek~~eLE----Rl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 78 REAQQQQLQALIAEKKMELE----RLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344455555555 788888898888887666554
No 302
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.18 E-value=35 Score=33.54 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=31.5
Q ss_pred ccccccccccccccc----------ceEEeCCCCcccchhhHh------cCCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDS----------CVLFLPCRHLCACRACEA------FLDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a----------~vlLlPCrHlclC~~C~~------~l~~CPvCR~~i~~ 300 (307)
..++..|.+|..+-- ++.=|.|.|. +=+.|-. +..+||.|...++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 345679999986432 3445899998 3455543 45899999877653
No 303
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.13 E-value=9.5e+02 Score=25.77 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 021834 169 EMESQAWQRIAQENEAMVFSLNNSLEQLKE 198 (307)
Q Consensus 169 ~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~ 198 (307)
..|-..-++-+..++..-..|-..++++..
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666667777777777643
No 304
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.11 E-value=2.1e+02 Score=26.41 Aligned_cols=9 Identities=33% Similarity=0.176 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 021834 93 QSLALQAEK 101 (307)
Q Consensus 93 ~~l~~~l~q 101 (307)
-+.+++.+.
T Consensus 16 ~~~~~~~~~ 24 (195)
T PRK14148 16 IETAAQVET 24 (195)
T ss_pred hHHHHHhhh
Confidence 334444443
No 305
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.05 E-value=33 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.571 Sum_probs=26.4
Q ss_pred ccccccccccccc-cceEEeCCCCcc------cchhhHhcC--------CCCCCCCcc
Q 021834 255 KMVMVCKGCNSRD-SCVLFLPCRHLC------ACRACEAFL--------DTCPVCLTP 297 (307)
Q Consensus 255 ~~~~~C~iC~~~~-a~vlLlPCrHlc------lC~~C~~~l--------~~CPvCR~~ 297 (307)
....+|-||.... ++ -|+|.| +|..|..++ ..|-.|+..
T Consensus 63 ~ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 3456899998644 33 488987 377777653 478888753
No 306
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.01 E-value=6.2e+02 Score=23.57 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 114 NERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 114 ~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
+-+|-..+.+.|+ +++++=.++ ..=+.-++|++.++--...|||.-++|.+.+.-
T Consensus 38 na~L~~e~~~L~~-q~~s~Qqal-----~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rq 92 (193)
T PF14662_consen 38 NAQLAEEITDLRK-QLKSLQQAL-----QKAKALEEELEDLKTLAKSLEEENRSLLAQARQ 92 (193)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555553 445553333 333455777777777666666666655555444
No 307
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.01 E-value=37 Score=21.56 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=10.2
Q ss_pred chhhHhcC----CCCCCCCccc
Q 021834 281 CRACEAFL----DTCPVCLTPK 298 (307)
Q Consensus 281 C~~C~~~l----~~CPvCR~~i 298 (307)
|..|...+ ..||.|--.+
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 55555443 6777775443
No 308
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.95 E-value=7.5e+02 Score=24.52 Aligned_cols=84 Identities=23% Similarity=0.197 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021834 112 SQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNN 191 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~ 191 (307)
.|.|+|++.= .+|+=|+-+|=+|++. --++.-+...|+..+.|.|.-|.|-...|..-.+--.--+...|..++.|-.
T Consensus 25 ~QldkLkKE~-qQrQfQleSlEAaLqK-QKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg 102 (307)
T PF10481_consen 25 QQLDKLKKER-QQRQFQLESLEAALQK-QKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG 102 (307)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 4667776652 2334444444333332 2334445556677778888777776666666555555556667777777766
Q ss_pred hHHHHH
Q 021834 192 SLEQLK 197 (307)
Q Consensus 192 ~LqQv~ 197 (307)
.|...+
T Consensus 103 Ql~s~K 108 (307)
T PF10481_consen 103 QLNSCK 108 (307)
T ss_pred HHHHHH
Confidence 665543
No 309
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.66 E-value=7.1e+02 Score=24.13 Aligned_cols=92 Identities=23% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 96 ALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 96 ~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
...++....|++..=+...+.+|..|.+... ...+.. +.|-+.+.+++...-+..++.++...+..|-..+
T Consensus 193 ~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~-------~i~~~k--~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 193 LENLKQLVEEIESCDQEELEALRQELAEQKE-------EIEAKK--KELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH----HhHHHHHHHHHhHHHH
Q 021834 176 QRIAQ----ENEAMVFSLNNSLEQL 196 (307)
Q Consensus 176 q~~Ak----~nEA~a~~Lr~~LqQv 196 (307)
..+-. ....-+..|++.++.+
T Consensus 264 ~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 264 EKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
No 310
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.66 E-value=50 Score=37.59 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=30.8
Q ss_pred cccccccccccc----cceEEeCCCCc--ccchhhHhc-----CCCCCCCCcccc
Q 021834 256 MVMVCKGCNSRD----SCVLFLPCRHL--CACRACEAF-----LDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~~----a~vlLlPCrHl--clC~~C~~~-----l~~CPvCR~~i~ 299 (307)
....|.||.+.- -.=+|+-|..- .+|+.|..- -..||.|.+..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 456899999852 22356667432 279999853 479999998765
No 311
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.51 E-value=2.1e+02 Score=23.66 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=21.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
+......+.+|+..+++|.+|+......+.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567888888999999986555554
No 312
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=22.43 E-value=4e+02 Score=22.72 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 021834 113 QNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRT 158 (307)
Q Consensus 113 q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn 158 (307)
+.|.+...++++.. +-+++.+.+.|+----||.|+++..
T Consensus 15 ~~ee~~~~~q~~~e-------~eA~kkA~K~lkKN~rEIkRL~~HA 53 (109)
T PHA02571 15 EVEELLSELQARNE-------AEAEKKAAKILKKNRREIKRLKKHA 53 (109)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45556666666655 5678888899998888998887754
No 313
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.40 E-value=4.8e+02 Score=26.01 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
..||+.+.++..||+-++|+|..|..
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888777643
No 314
>PRK14158 heat shock protein GrpE; Provisional
Probab=22.38 E-value=2.4e+02 Score=25.99 Aligned_cols=25 Identities=0% Similarity=-0.081 Sum_probs=9.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 021834 153 KATNRTMELEILLKKLEMESQAWQR 177 (307)
Q Consensus 153 r~~rrn~ELeErlrqL~~E~Q~Wq~ 177 (307)
....+..+|.+++.++.+|....++
T Consensus 51 ~le~e~~el~d~~lR~~AefeN~Rk 75 (194)
T PRK14158 51 AKEAEAAANWDKYLRERADLENYRK 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444333
No 315
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=22.24 E-value=4.6e+02 Score=21.82 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 105 EIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 105 EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
.+-.++..+......++....+.. ..+-+.+.|++.+..++..|+..++.|.-+
T Consensus 33 ~~l~~f~~~~~~g~~~~~~~~~l~-------------~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 33 ALLALFQYLAWFGKNGAADVLQLQ-------------RQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555555555555555444321 111167778888888888888888888777
No 316
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.23 E-value=4.9e+02 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~ 170 (307)
.+|.++.+||...-.+.++....
T Consensus 79 ~ADfeNyRKR~~kE~e~~~~~a~ 101 (208)
T PRK14154 79 QAEMDNLRKRIEREKADIIKFGS 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544444444444333
No 317
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=22.16 E-value=5.9e+02 Score=23.03 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021834 160 ELEILLKKLEMESQAWQRI 178 (307)
Q Consensus 160 ELeErlrqL~~E~Q~Wq~~ 178 (307)
+..|+|.+|..||..-+.+
T Consensus 157 ~~qe~i~qL~~EN~~LRel 175 (181)
T PF05769_consen 157 EEQEIIAQLETENKGLREL 175 (181)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556667777777665443
No 318
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.12 E-value=1.4e+02 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=17.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
|..+.+.|..|.++|.+|.+|-|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777665
No 319
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=22.08 E-value=52 Score=25.03 Aligned_cols=17 Identities=24% Similarity=0.655 Sum_probs=13.8
Q ss_pred CCCCCCCCccccceEEE
Q 021834 288 LDTCPVCLTPKKASIEA 304 (307)
Q Consensus 288 l~~CPvCR~~i~~sV~V 304 (307)
..+||+|.++....++.
T Consensus 39 ~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CccCCCcCCccccceee
Confidence 37999999998887764
No 320
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=21.97 E-value=1.1e+02 Score=31.67 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
....|-.+|+|-|++.+||.+|.++++.-
T Consensus 195 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 223 (476)
T PRK06278 195 FLKYLKIKEDEKEEIFKKNKILKEKLKSR 223 (476)
T ss_pred HHHHcCCChHHHHHHHHHhHHHHHHHHHH
Confidence 34778899999999999999999999763
No 321
>PRK14164 heat shock protein GrpE; Provisional
Probab=21.78 E-value=4.5e+02 Score=24.71 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHH
Q 021834 113 QNERLRLVLQEQRK 126 (307)
Q Consensus 113 q~ErLR~~L~E~r~ 126 (307)
+.+.|...++|.+.
T Consensus 78 ~~~~le~el~el~d 91 (218)
T PRK14164 78 EASTVEAQLAERTE 91 (218)
T ss_pred hHHHHHHHHHHHHH
Confidence 34455555555443
No 322
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=21.67 E-value=1.5e+02 Score=26.63 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=24.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021834 149 EEIAKATNRTMELEILLKKLEMESQAWQRIAQE 181 (307)
Q Consensus 149 ~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~ 181 (307)
+|-..+.++..||++.|.++..|...|+.....
T Consensus 55 ~~~~~~~~k~~el~~eiekvkke~Eekq~~k~~ 87 (182)
T PF08432_consen 55 EEYVEAKKKKKELEEEIEKVKKEYEEKQKWKKE 87 (182)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 344455667778888888888889999988765
No 323
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=21.51 E-value=1.6e+02 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=20.7
Q ss_pred hhHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Q 021834 146 QKDEEIAKA-TNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 146 eKe~Eier~-~rrn~ELeErlrqL~~E~Q~ 174 (307)
+|++||.|+ +-+..|++++|++|...+-.
T Consensus 10 ~k~eElkrlK~lK~~Ei~~kl~kik~~~G~ 39 (101)
T PF05178_consen 10 EKEEELKRLKNLKRKEIEEKLEKIKEVAGL 39 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 577788777 34566888888888766553
No 324
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.48 E-value=2.5e+02 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=9.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 021834 154 ATNRTMELEILLKKLEMESQAWQR 177 (307)
Q Consensus 154 ~~rrn~ELeErlrqL~~E~Q~Wq~ 177 (307)
+..+..+|.+++.++.+|.+..++
T Consensus 51 l~~e~~elkd~~lR~~AEfeN~rk 74 (194)
T PRK14162 51 LKAKNKDLEDKYLRSQAEIQNMQN 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444333
No 325
>PRK14159 heat shock protein GrpE; Provisional
Probab=21.37 E-value=2.1e+02 Score=26.00 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.1
Q ss_pred HHHHHHHhhhHH
Q 021834 149 EEIAKATNRTME 160 (307)
Q Consensus 149 ~Eier~~rrn~E 160 (307)
+|.++.+||...
T Consensus 51 AdfeN~rkR~~r 62 (176)
T PRK14159 51 AEFENIKKRMEK 62 (176)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 326
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.33 E-value=8.2e+02 Score=24.86 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------------------HHHHHHH
Q 021834 72 QQQQLQHQQQRNQNFDSMPFSQSLALQAEKQRQEIDHYIISQNERLRLVLQ----------------------EQRKQQL 129 (307)
Q Consensus 72 ~~~~~~~~~~~~q~~~s~~~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~----------------------E~r~Rh~ 129 (307)
.++++....++-.....-+........+++++..+|.+-+-=...++..|+ +..+.+.
T Consensus 275 m~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a~~~~L~~k~~rL~~L~~rL~aLSPl~~~~~~~~~l 354 (432)
T TIGR00237 275 FDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRT 354 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHH
Q 021834 130 EVLLKKIEIKTSALLRQKDEEIAKATNRTMEL 161 (307)
Q Consensus 130 r~ll~avE~~~~~rLReKe~Eier~~rrn~EL 161 (307)
..+-..+...+.+.|+.+..+++....+..-|
T Consensus 355 ~~~~~~l~~~~~~~l~~~~~~l~~~~~~l~~l 386 (432)
T TIGR00237 355 EQLNRRLNALKNAQANLKLPQFGTLVGKLNAL 386 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 327
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=21.30 E-value=24 Score=35.09 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=29.4
Q ss_pred cccccccccccccc---ceEEeCCCCcccchhhHhc----------------------C-----CCCCCCCcccc
Q 021834 255 KMVMVCKGCNSRDS---CVLFLPCRHLCACRACEAF----------------------L-----DTCPVCLTPKK 299 (307)
Q Consensus 255 ~~~~~C~iC~~~~a---~vlLlPCrHlclC~~C~~~----------------------l-----~~CPvCR~~i~ 299 (307)
...+.|+||+-.-+ .++.-||.|+.-| .|..+ + ..|||||..|.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~-~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHF-ACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34577888875333 3777899999643 34332 1 47999998875
No 328
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.25 E-value=1.5e+03 Score=27.30 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
+++++.+..+..++++++..+..+-..|
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444
No 329
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.23 E-value=3.7e+02 Score=20.33 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=6.4
Q ss_pred HHHHHhhhHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKK 167 (307)
Q Consensus 151 ier~~rrn~ELeErlrq 167 (307)
+.++..+..++++++..
T Consensus 8 l~~ie~~l~~~~~~i~~ 24 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDK 24 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 330
>PRK13677 hypothetical protein; Provisional
Probab=21.22 E-value=3e+02 Score=23.95 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 021834 95 LALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAK 153 (307)
Q Consensus 95 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier 153 (307)
+...|-.=-+|+|++.+...+ +.-.++....-|.-+|..|+.++-|-|+.||+
T Consensus 72 i~~~l~~vidELd~i~~~~~~------e~d~K~kiL~dLrHLE~Vv~~KIaEIe~dLek 124 (125)
T PRK13677 72 ISPNLRYVIDELDQICQRDRE------EVDLKRKILDDLRHLESVVANKISEIEADLEK 124 (125)
T ss_pred ccHHHHHHHHHHHHHhcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555556788888774433 33345566667778888899988888888875
No 331
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=21.22 E-value=61 Score=22.21 Aligned_cols=29 Identities=34% Similarity=0.792 Sum_probs=19.3
Q ss_pred cccccccccccceEEeCCCCcccchhhHhcC
Q 021834 258 MVCKGCNSRDSCVLFLPCRHLCACRACEAFL 288 (307)
Q Consensus 258 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l 288 (307)
+.|+.|..+. +++-+=+--..|..|...+
T Consensus 1 m~Cp~Cg~~~--~~~D~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKE--IVFDPERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSE--EEEETTTTEEEETTT-BBE
T ss_pred CCCcCCcCCc--eEEcCCCCeEECCCCCCEe
Confidence 4688888866 5666666666777776543
No 332
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=21.16 E-value=87 Score=25.45 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=25.7
Q ss_pred cccccccccc--cceEEeCCCCcccchhhHhc-------CCCCCCCCcccc
Q 021834 258 MVCKGCNSRD--SCVLFLPCRHLCACRACEAF-------LDTCPVCLTPKK 299 (307)
Q Consensus 258 ~~C~iC~~~~--a~vlLlPCrHlclC~~C~~~-------l~~CPvCR~~i~ 299 (307)
..|..|.... -.+++-.|+|. +=.-|-.+ -..||+||.+..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4566665432 23456678887 45566422 379999998754
No 333
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.15 E-value=56 Score=37.33 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=30.9
Q ss_pred ccccccccccc----ccceEEeCCCCc--ccchhhHhc-----CCCCCCCCcccc
Q 021834 256 MVMVCKGCNSR----DSCVLFLPCRHL--CACRACEAF-----LDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~----~a~vlLlPCrHl--clC~~C~~~-----l~~CPvCR~~i~ 299 (307)
....|.||.+. .-.=+|+-|..- .+|+.|..- -..||.|++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 44599999985 223366667432 279999842 489999998765
No 334
>PLN02678 seryl-tRNA synthetase
Probab=21.07 E-value=7.4e+02 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhHHHHHHHh
Q 021834 182 NEAMVFSLNNSLEQLKEKA 200 (307)
Q Consensus 182 nEA~a~~Lr~~LqQv~~~~ 200 (307)
-|+....|...|.+++..-
T Consensus 90 le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 90 KEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3344455566666666553
No 335
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.06 E-value=3.4e+02 Score=19.84 Aligned_cols=21 Identities=29% Similarity=0.329 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021834 159 MELEILLKKLEMESQAWQRIA 179 (307)
Q Consensus 159 ~ELeErlrqL~~E~Q~Wq~~A 179 (307)
.+||+++..|..|+..+....
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554433
No 336
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.90 E-value=5.4e+02 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021834 94 SLALQAEKQRQEIDHYII 111 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~ 111 (307)
.|+.-|=+....||.+|.
T Consensus 73 elA~dIi~kakqIe~LId 90 (144)
T PF11221_consen 73 ELATDIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555556666654
No 337
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.89 E-value=7.7e+02 Score=23.85 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 021834 160 ELEILLKKLEME 171 (307)
Q Consensus 160 ELeErlrqL~~E 171 (307)
+|+.++..+.+|
T Consensus 218 ~L~~~l~~~~~~ 229 (362)
T TIGR01010 218 TLEGELIRVQAQ 229 (362)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 338
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.82 E-value=1.9e+02 Score=23.00 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
+++.+++|+.+..+...++.++.-+..+-..|
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444333333
No 339
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=20.82 E-value=4.2e+02 Score=27.56 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=8.3
Q ss_pred HHhhHHHHHHHHhhhHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEIL 164 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeEr 164 (307)
||+...-+++.-.+|..|-|+
T Consensus 274 lrelnqrL~~EL~~~raLaeq 294 (497)
T COG3851 274 LRELNQRLQKELARNRALAEQ 294 (497)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 344333333333334444333
No 340
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.74 E-value=1.7e+02 Score=22.08 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 156 NRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 156 rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
-|...||.||...+.+.+.-...++
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444
No 341
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.73 E-value=2.1e+02 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQL 129 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~ 129 (307)
+|..+|+.-+.||++ ||=+.|++...|++..+||-
T Consensus 58 ~l~~ql~~lq~ev~~-LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 58 QLQQQLSDNQSDIDS-LRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 456677777777777 46777777777777666553
No 342
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=20.71 E-value=6.6e+02 Score=23.02 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 021834 95 LALQAEKQRQEIDHYIISQ------------------------NERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEE 150 (307)
Q Consensus 95 l~~~l~qQ~~EID~~i~~q------------------------~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~E 150 (307)
+..+|+++-.|.+.+|... .+.|+..|...+. ...-+..+-..+..-|.+|..-
T Consensus 68 iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~--nl~~a~~~a~~AQ~el~eK~qL 145 (188)
T PF05335_consen 68 IVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQA--NLANAEQVAEGAQQELAEKTQL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666543 4444444444432 1122233334556678888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
|+.+.+|-.+|...|.....+-..=+.-|.
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~ 175 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEKTKKAAY 175 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777666665444443
No 343
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.65 E-value=4.4e+02 Score=20.97 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 92 SQSLALQAEKQR---QEIDHYIISQNER--LRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 92 s~~l~~~l~qQ~---~EID~~i~~q~Er--LR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlr 166 (307)
++.+..-+.+.. ..+|.++.+..++ +...+++.|.++ ..+-..++...+.+ ++.+.+..+..+|-+.++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~r-----N~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~ 84 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAER-----NELSKEIGKLKKAG-EDAEELKAEVKELKEEIK 84 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 021834 167 KLEMESQAWQRIAQE 181 (307)
Q Consensus 167 qL~~E~Q~Wq~~Ak~ 181 (307)
.+..+-..+...-.+
T Consensus 85 ~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 85 ELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 344
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.48 E-value=3.6e+02 Score=21.59 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=16.0
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHHHHHH
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErlrqL~~ 170 (307)
+.+|+...++.+++......++.++++.+..
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544443
No 345
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=20.47 E-value=1.1e+02 Score=31.49 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E 171 (307)
++|++.=.|+..|||+|+++|++|
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AE 417 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAE 417 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455666788888888777
No 346
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=20.44 E-value=4.4e+02 Score=28.37 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=34.1
Q ss_pred HhhHHHHHHHHhhhHHHHHHHH-H--------HHHHHHHHHHHHHHh------H--HHHHHHHHhHHHHHHHh
Q 021834 145 RQKDEEIAKATNRTMELEILLK-K--------LEMESQAWQRIAQEN------E--AMVFSLNNSLEQLKEKA 200 (307)
Q Consensus 145 ReKe~Eier~~rrn~ELeErlr-q--------L~~E~Q~Wq~~Ak~n------E--A~a~~Lr~~LqQv~~~~ 200 (307)
|+.-++++.+.+|-.+|+++|+ + -..|.++||..++-+ | .--..|++.|-+++...
T Consensus 518 reLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~dp~y~eeK~RceYLhsKLaHIK~lI 590 (604)
T KOG4796|consen 518 RELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKDPNYMEEKQRCEYLHSKLAHIKTLI 590 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555 2 246788888887633 2 23478999998877543
No 347
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.37 E-value=8.7e+02 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 021834 127 QQLEVLLKKIEIKTSALLRQKDEEIAKATNR 157 (307)
Q Consensus 127 Rh~r~ll~avE~~~~~rLReKe~Eier~~rr 157 (307)
.+...+-..+..++.++|..+...++.+..+
T Consensus 312 q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~r 342 (438)
T PRK00286 312 QRLDRLQQRLQRALERRLRLAKQRLERLSQR 342 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666655443
No 348
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=20.35 E-value=5.4e+02 Score=21.90 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRL--------VLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEIL 164 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~--------~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeEr 164 (307)
.++...++.+..+| ..|+||+ ...+.|.++...+. ..++||..|+||.+-.-.-|.
T Consensus 44 ~~~~~~~~~~A~~V------E~eKlkAIG~RN~l~s~~k~R~~~~q~lq--------~~I~Ek~~eLERl~~E~~sL~-- 107 (120)
T PF14931_consen 44 KGFIEILDELAKRV------ENEKLKAIGARNLLKSEAKQREAQQQQLQ--------ALIAEKKMELERLRSEYESLQ-- 107 (120)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--
Confidence 44444555555444 3455543 45555665555554 567899999999876443333
Q ss_pred HHHHHHHHHH
Q 021834 165 LKKLEMESQA 174 (307)
Q Consensus 165 lrqL~~E~Q~ 174 (307)
++++|-..
T Consensus 108 --kve~eQ~~ 115 (120)
T PF14931_consen 108 --KVEQEQNE 115 (120)
T ss_pred --HHHHHHHH
Confidence 55555443
No 349
>PHA03248 DNA packaging tegument protein UL25; Provisional
Probab=20.25 E-value=3.5e+02 Score=29.11 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 117 LRLVLQEQRKQQLEVLLKKIEI-------KTSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 117 LR~~L~E~r~Rh~r~ll~avE~-------~~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
.|..+-++|+|-..+-|.-++. -+.+|||-.|+.++++..-...||+..
T Consensus 53 ~~~~~~~~r~~Aa~AAld~l~~~~~~~~~~v~~rl~p~e~~~~~v~~~l~~le~aa 108 (583)
T PHA03248 53 ARLALLEARNRAAAAALDNLAGQAATIPVEVDRRLRPIERQLEEVADALADLEEAA 108 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4555556666655554443332 345677777777777777766676655
No 350
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.14 E-value=8.1e+02 Score=23.80 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=34.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHH
Q 021834 105 EIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELE 162 (307)
Q Consensus 105 EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELe 162 (307)
+|..-|+.-...+...++..++ ...-|.+=|...-.|+..|..|+||..||..-|+
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~--~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQ--QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555543 2233445556666778888888888888877654
No 351
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.12 E-value=1.1e+03 Score=25.16 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSAL---LRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~r---LReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
..+...+..-..|||.+ .++|+..-.+-.-.....-+..++..+.+. +..++.+++.+.+...+++..++++.
T Consensus 394 ~~~~~~~~~~e~el~~l----~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 394 SQLLKELRELEEELAEV----DKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 170 MESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 170 ~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
.....+...-+.-+. +..++..|+.....
T Consensus 470 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 498 (650)
T TIGR03185 470 KQKINAFELERAITI-ADKAKKTLKEFREK 498 (650)
T ss_pred HHHHhhhhHHHHHHH-HHHHHHHHHHHHHH
No 352
>PRK14147 heat shock protein GrpE; Provisional
Probab=20.09 E-value=2.4e+02 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=8.4
Q ss_pred HHHHHHHhhhHHHHHHHHH
Q 021834 149 EEIAKATNRTMELEILLKK 167 (307)
Q Consensus 149 ~Eier~~rrn~ELeErlrq 167 (307)
+|.++.+||...=-+.++.
T Consensus 46 Ad~eN~rkR~~kE~e~~~~ 64 (172)
T PRK14147 46 ADLENQRKRIARDVEQARK 64 (172)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555444443333333
Done!