Query 021834
Match_columns 307
No_of_seqs 218 out of 1092
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.4 3.6E-14 1.2E-18 106.3 2.6 53 254-306 12-64 (68)
2 2vje_B MDM4 protein; proto-onc 99.4 2E-13 6.7E-18 100.5 2.4 53 255-307 5-63 (63)
3 2yho_A E3 ubiquitin-protein li 99.3 6.8E-13 2.3E-17 101.9 4.3 54 254-307 15-68 (79)
4 2ecg_A Baculoviral IAP repeat- 99.3 4.3E-13 1.5E-17 101.1 2.7 54 254-307 22-75 (75)
5 4ic3_A E3 ubiquitin-protein li 99.3 7.9E-13 2.7E-17 99.7 4.1 54 254-307 21-74 (74)
6 2vje_A E3 ubiquitin-protein li 99.3 5.7E-13 1.9E-17 98.3 1.8 53 255-307 6-64 (64)
7 3t6p_A Baculoviral IAP repeat- 99.0 1.8E-10 6.2E-15 110.6 4.3 54 254-307 292-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.5 7.8E-07 2.7E-11 73.7 9.8 45 257-302 53-101 (138)
9 2d8t_A Dactylidin, ring finger 98.3 2E-07 6.9E-12 68.6 2.4 46 254-300 12-61 (71)
10 2ecn_A Ring finger protein 141 98.3 6.4E-08 2.2E-12 70.7 -0.6 51 254-306 12-66 (70)
11 1chc_A Equine herpes virus-1 r 98.3 3.7E-07 1.3E-11 66.1 2.8 48 257-305 5-57 (68)
12 2csy_A Zinc finger protein 183 98.2 3.9E-07 1.3E-11 68.6 2.0 48 254-302 12-63 (81)
13 2ysl_A Tripartite motif-contai 98.2 9.5E-07 3.3E-11 64.6 3.3 46 254-300 17-69 (73)
14 2xeu_A Ring finger protein 4; 98.1 9.4E-07 3.2E-11 62.7 2.5 49 257-306 3-64 (64)
15 2ecm_A Ring finger and CHY zin 98.1 1.7E-06 5.7E-11 60.0 3.2 44 256-300 4-55 (55)
16 2ea6_A Ring finger protein 4; 98.1 6.2E-07 2.1E-11 64.5 0.7 46 254-300 12-68 (69)
17 3ng2_A RNF4, snurf, ring finge 98.1 7.6E-07 2.6E-11 64.7 1.2 46 254-300 7-63 (71)
18 2y1n_A E3 ubiquitin-protein li 98.1 2.4E-06 8.1E-11 83.5 4.8 49 257-306 332-385 (389)
19 2ct2_A Tripartite motif protei 98.0 1.2E-06 4E-11 66.1 1.7 46 254-300 12-68 (88)
20 2kiz_A E3 ubiquitin-protein li 98.0 2E-06 6.9E-11 62.5 2.4 48 254-302 11-65 (69)
21 2egp_A Tripartite motif-contai 98.0 2.5E-06 8.7E-11 63.1 2.8 46 254-300 9-65 (79)
22 2ecw_A Tripartite motif-contai 98.0 3.9E-06 1.3E-10 62.4 3.5 46 254-300 16-71 (85)
23 2ecv_A Tripartite motif-contai 98.0 3.3E-06 1.1E-10 62.8 3.0 46 254-300 16-71 (85)
24 2ect_A Ring finger protein 126 98.0 2E-06 6.8E-11 63.9 1.5 47 254-301 12-65 (78)
25 2djb_A Polycomb group ring fin 97.9 2.3E-06 7.8E-11 63.0 1.6 47 254-301 12-63 (72)
26 1iym_A EL5; ring-H2 finger, ub 97.9 5.9E-06 2E-10 57.3 3.7 43 256-299 4-54 (55)
27 2ep4_A Ring finger protein 24; 97.9 2.4E-06 8.2E-11 62.9 1.0 49 254-303 12-67 (74)
28 1bor_A Transcription factor PM 97.9 4.3E-06 1.5E-10 59.3 2.2 45 255-300 4-49 (56)
29 1x4j_A Ring finger protein 38; 97.9 5.6E-06 1.9E-10 61.3 2.7 46 255-301 21-73 (75)
30 2l0b_A E3 ubiquitin-protein li 97.8 5.2E-06 1.8E-10 64.2 2.0 46 255-301 38-90 (91)
31 2yur_A Retinoblastoma-binding 97.8 6.1E-06 2.1E-10 61.3 1.8 45 254-299 12-63 (74)
32 3l11_A E3 ubiquitin-protein li 97.8 4.9E-06 1.7E-10 66.4 1.2 46 254-300 12-62 (115)
33 2ecy_A TNF receptor-associated 97.8 1.1E-05 3.6E-10 58.4 2.7 46 254-300 12-62 (66)
34 1g25_A CDK-activating kinase a 97.8 7.7E-06 2.6E-10 58.9 1.9 43 257-300 3-55 (65)
35 3fl2_A E3 ubiquitin-protein li 97.7 1.8E-05 6.1E-10 64.0 3.6 45 255-300 50-99 (124)
36 2ecj_A Tripartite motif-contai 97.7 7.1E-06 2.4E-10 57.2 0.9 40 254-294 12-58 (58)
37 1e4u_A Transcriptional repress 97.7 6.6E-06 2.3E-10 62.9 0.6 48 254-302 8-64 (78)
38 3ztg_A E3 ubiquitin-protein li 97.7 1.4E-05 4.9E-10 61.0 2.1 45 253-298 9-60 (92)
39 3lrq_A E3 ubiquitin-protein li 97.6 1.6E-05 5.5E-10 62.4 2.0 47 253-300 18-70 (100)
40 2f42_A STIP1 homology and U-bo 97.6 0.00011 3.9E-09 64.7 7.6 46 254-300 103-153 (179)
41 1jm7_A BRCA1, breast cancer ty 97.6 1.6E-05 5.3E-10 62.5 1.7 46 254-300 18-70 (112)
42 1t1h_A Gspef-atpub14, armadill 97.6 2.4E-05 8.3E-10 58.0 2.6 47 253-300 4-55 (78)
43 2ckl_A Polycomb group ring fin 97.6 2.8E-05 9.7E-10 61.4 2.7 46 254-300 12-62 (108)
44 2y43_A E3 ubiquitin-protein li 97.6 2.7E-05 9.2E-10 60.5 2.5 45 255-300 20-69 (99)
45 1z6u_A NP95-like ring finger p 97.5 3.1E-05 1.1E-09 65.6 2.5 46 255-301 76-126 (150)
46 2ckl_B Ubiquitin ligase protei 97.5 3.2E-05 1.1E-09 65.4 2.6 45 254-299 51-101 (165)
47 1jm7_B BARD1, BRCA1-associated 97.4 4.9E-05 1.7E-09 61.1 2.4 45 254-299 19-66 (117)
48 3hct_A TNF receptor-associated 97.4 6.2E-05 2.1E-09 60.5 2.9 46 254-300 15-65 (118)
49 2ysj_A Tripartite motif-contai 97.4 0.0001 3.5E-09 52.5 3.7 40 254-294 17-63 (63)
50 1v87_A Deltex protein 2; ring- 97.3 8.9E-05 3E-09 58.7 2.8 44 256-300 24-94 (114)
51 4ap4_A E3 ubiquitin ligase RNF 97.3 7.4E-05 2.5E-09 59.5 2.0 45 255-300 5-60 (133)
52 1rmd_A RAG1; V(D)J recombinati 97.3 0.0001 3.4E-09 58.8 2.5 45 255-300 21-70 (116)
53 4ap4_A E3 ubiquitin ligase RNF 97.3 0.00015 5.1E-09 57.7 3.5 51 255-306 70-133 (133)
54 2ecl_A Ring-box protein 2; RNF 97.1 0.0003 1E-08 53.2 3.2 29 271-300 44-76 (81)
55 3hcs_A TNF receptor-associated 96.8 0.0006 2.1E-08 57.7 2.9 46 254-300 15-65 (170)
56 2c2l_A CHIP, carboxy terminus 96.8 0.00062 2.1E-08 60.5 3.1 47 253-300 204-255 (281)
57 3knv_A TNF receptor-associated 96.7 0.00023 7.8E-09 59.7 -0.3 44 254-298 28-76 (141)
58 1wgm_A Ubiquitin conjugation f 96.6 0.00089 3E-08 52.9 2.5 46 254-300 19-69 (98)
59 2kr4_A Ubiquitin conjugation f 96.5 0.00079 2.7E-08 51.6 1.6 47 253-300 10-60 (85)
60 3dpl_R Ring-box protein 1; ubi 96.4 0.002 6.7E-08 51.9 3.7 42 257-299 37-100 (106)
61 2kre_A Ubiquitin conjugation f 96.4 0.0011 3.6E-08 52.7 1.7 47 253-300 25-75 (100)
62 3vk6_A E3 ubiquitin-protein li 96.2 0.0034 1.1E-07 51.0 3.6 45 259-304 3-53 (101)
63 2d8s_A Cellular modulator of i 95.6 0.0083 2.8E-07 45.9 3.3 45 255-300 13-70 (80)
64 4a0k_B E3 ubiquitin-protein li 95.4 0.0028 9.7E-08 52.1 0.2 42 257-299 48-111 (117)
65 1wim_A KIAA0161 protein; ring 94.9 0.007 2.4E-07 46.5 1.2 41 256-297 4-61 (94)
66 2v71_A Nuclear distribution pr 94.9 0.6 2.1E-05 41.5 13.7 75 111-197 23-101 (189)
67 2yu4_A E3 SUMO-protein ligase 94.5 0.02 6.7E-07 44.4 2.8 43 254-297 4-59 (94)
68 2oqq_A Transcription factor HY 94.3 0.11 3.8E-06 35.8 5.8 35 146-180 7-41 (42)
69 1vyx_A ORF K3, K3RING; zinc-bi 91.2 0.11 3.7E-06 37.5 2.4 44 256-299 5-58 (60)
70 3htk_C E3 SUMO-protein ligase 90.7 0.092 3.1E-06 49.0 2.0 45 254-299 178-231 (267)
71 4etp_A Kinesin-like protein KA 88.8 1.1 3.8E-05 43.4 8.0 58 142-199 3-60 (403)
72 2v66_B Nuclear distribution pr 87.9 9.9 0.00034 31.0 13.8 87 110-201 8-94 (111)
73 1ci6_A Transcription factor AT 87.6 2.4 8.2E-05 30.9 7.4 37 144-180 25-61 (63)
74 3oja_B Anopheles plasmodium-re 86.2 26 0.00089 34.1 16.3 65 132-196 506-570 (597)
75 3oja_B Anopheles plasmodium-re 85.8 17 0.00057 35.5 14.6 14 186-199 567-580 (597)
76 3mq9_A Bone marrow stromal ant 85.7 6.5 0.00022 37.6 11.4 25 104-128 396-420 (471)
77 3oja_A Leucine-rich immune mol 81.8 37 0.0013 32.4 15.2 57 143-199 422-478 (487)
78 2bay_A PRE-mRNA splicing facto 81.6 0.8 2.7E-05 32.9 2.4 43 257-300 3-50 (61)
79 1ez3_A Syntaxin-1A; three heli 81.3 11 0.00039 29.6 9.4 85 112-199 19-110 (127)
80 3vp9_A General transcriptional 79.2 8 0.00027 30.7 7.6 68 84-167 21-90 (92)
81 3iv1_A Tumor susceptibility ge 79.2 20 0.00067 27.6 9.8 58 131-195 3-71 (78)
82 2ko5_A Ring finger protein Z; 78.7 0.6 2.1E-05 37.5 1.0 49 254-304 25-77 (99)
83 2v66_B Nuclear distribution pr 78.1 6.8 0.00023 32.0 7.1 44 155-198 2-49 (111)
84 1t6f_A Geminin; coiled-coil, c 78.1 4.5 0.00016 27.0 4.9 22 142-163 14-35 (37)
85 3hnw_A Uncharacterized protein 77.9 17 0.00058 30.4 9.7 32 142-173 103-134 (138)
86 3s9g_A Protein hexim1; cyclin 77.7 21 0.00072 28.8 9.7 30 141-177 64-93 (104)
87 1jnm_A Proto-oncogene C-JUN; B 77.4 9.1 0.00031 27.5 6.9 30 144-173 24-53 (62)
88 3s9g_A Protein hexim1; cyclin 74.7 26 0.00088 28.3 9.4 26 155-183 64-89 (104)
89 1a93_B MAX protein, coiled coi 74.3 4.3 0.00015 26.8 4.0 28 142-169 7-34 (34)
90 1dip_A Delta-sleep-inducing pe 72.7 2.1 7.3E-05 32.9 2.6 32 148-179 14-45 (78)
91 2wt7_A Proto-oncogene protein 72.3 24 0.00083 25.3 9.6 38 144-181 25-62 (63)
92 2jee_A YIIU; FTSZ, septum, coi 72.2 22 0.00074 27.6 8.2 28 154-181 46-73 (81)
93 1hjb_A Ccaat/enhancer binding 70.7 31 0.0011 26.8 8.9 33 148-180 42-74 (87)
94 2wvr_A Geminin; DNA replicatio 69.2 23 0.00078 31.9 8.8 62 114-190 95-156 (209)
95 2l5g_B Putative uncharacterize 68.6 11 0.00038 25.9 5.1 31 142-172 9-39 (42)
96 3mq7_A Bone marrow stromal ant 67.5 28 0.00094 28.8 8.3 33 142-174 71-103 (121)
97 3na7_A HP0958; flagellar bioge 65.7 74 0.0025 28.3 14.0 56 142-197 90-145 (256)
98 1t2k_D Cyclic-AMP-dependent tr 65.0 34 0.0012 24.2 9.3 35 144-178 24-58 (61)
99 1kd8_A GABH AIV, GCN4 acid bas 64.9 7.9 0.00027 25.8 3.7 29 143-171 2-30 (36)
100 3nmd_A CGMP dependent protein 64.4 14 0.00047 28.1 5.5 29 144-172 35-63 (72)
101 1t3j_A Mitofusin 1; coiled coi 64.2 32 0.0011 27.3 7.9 59 126-195 31-89 (96)
102 3k1l_B Fancl; UBC, ring, RWD, 64.2 1.2 4E-05 43.5 -0.6 49 255-304 306-377 (381)
103 1s94_A S-syntaxin; three helix 64.1 37 0.0013 28.5 9.0 85 112-199 50-141 (180)
104 1gd2_E Transcription factor PA 64.0 31 0.001 25.8 7.4 26 148-173 42-67 (70)
105 1wlq_A Geminin; coiled-coil; 2 63.2 40 0.0014 26.2 8.0 48 115-165 19-68 (83)
106 2b5u_A Colicin E3; high resolu 62.5 47 0.0016 33.7 10.4 25 142-166 321-345 (551)
107 2ct0_A Non-SMC element 1 homol 62.0 12 0.0004 28.1 4.8 44 257-301 15-65 (74)
108 1kd8_B GABH BLL, GCN4 acid bas 60.5 8.4 0.00029 25.6 3.2 26 143-168 2-27 (36)
109 2q6q_A Spindle POLE BODY compo 60.4 46 0.0016 25.1 7.7 27 141-167 9-35 (74)
110 2zxx_A Geminin; coiled-coil, c 59.2 40 0.0014 26.0 7.4 49 115-166 15-65 (79)
111 3mq7_A Bone marrow stromal ant 59.1 75 0.0026 26.2 13.5 23 143-165 86-108 (121)
112 2akf_A Coronin-1A; coiled coil 54.4 23 0.0008 22.6 4.4 28 147-174 4-31 (32)
113 3i00_A HIP-I, huntingtin-inter 54.3 45 0.0015 27.3 7.5 49 145-196 11-59 (120)
114 3e98_A GAF domain of unknown f 53.9 32 0.0011 31.1 7.1 34 151-191 74-107 (252)
115 2dfs_A Myosin-5A; myosin-V, in 52.3 1.3E+02 0.0044 32.8 12.6 24 146-169 995-1018(1080)
116 3ghg_C Fibrinogen gamma chain; 50.3 1.8E+02 0.0063 28.4 12.3 103 94-198 24-133 (411)
117 1wle_A Seryl-tRNA synthetase; 49.2 1.3E+02 0.0043 30.0 11.2 72 95-171 53-138 (501)
118 3ghg_A Fibrinogen alpha chain; 49.1 60 0.0021 33.0 8.8 29 97-125 74-102 (562)
119 2jun_A Midline-1; B-BOX, TRIM, 48.0 7.2 0.00025 29.5 1.6 30 257-287 3-35 (101)
120 2dfs_A Myosin-5A; myosin-V, in 45.9 3.2E+02 0.011 29.6 16.4 43 134-176 994-1036(1080)
121 3m91_A Proteasome-associated A 45.4 37 0.0013 24.0 4.8 31 141-171 8-38 (51)
122 3mq9_A Bone marrow stromal ant 45.3 2E+02 0.0069 27.1 12.4 46 151-199 420-465 (471)
123 3u06_A Protein claret segregat 44.9 66 0.0023 31.1 8.2 55 145-199 6-60 (412)
124 3s4r_A Vimentin; alpha-helix, 44.9 1.1E+02 0.0036 23.7 12.3 76 93-177 16-91 (93)
125 2v71_A Nuclear distribution pr 44.6 1.6E+02 0.0056 25.8 17.1 87 110-201 61-147 (189)
126 1uii_A Geminin; human, DNA rep 44.5 1.1E+02 0.0037 23.8 8.5 50 114-166 26-77 (83)
127 1fmh_A General control protein 44.4 40 0.0014 21.5 4.3 27 146-172 5-31 (33)
128 1jnm_A Proto-oncogene C-JUN; B 44.1 33 0.0011 24.5 4.5 34 157-190 23-56 (62)
129 2dgc_A Protein (GCN4); basic d 43.7 80 0.0027 22.8 6.6 18 157-174 31-48 (63)
130 3nmd_A CGMP dependent protein 43.7 45 0.0015 25.3 5.3 13 183-195 53-65 (72)
131 2i1j_A Moesin; FERM, coiled-co 43.5 32 0.0011 34.7 5.9 36 158-193 337-372 (575)
132 3vkg_A Dynein heavy chain, cyt 43.4 2.9E+02 0.0099 33.9 14.6 13 98-110 1949-1961(3245)
133 1deq_A Fibrinogen (alpha chain 43.3 1.9E+02 0.0064 28.2 10.9 67 98-165 78-157 (390)
134 1gu4_A CAAT/enhancer binding p 42.5 1.1E+02 0.0037 23.2 7.7 28 150-177 44-71 (78)
135 3m48_A General control protein 41.5 32 0.0011 22.5 3.6 26 143-168 1-26 (33)
136 2wq1_A General control protein 41.4 29 0.00099 22.6 3.4 26 143-168 1-26 (33)
137 1m1j_C Fibrinogen gamma chain; 41.4 1.8E+02 0.0063 28.2 10.7 21 177-197 112-132 (409)
138 2ve7_A Kinetochore protein HEC 41.4 39 0.0013 31.5 5.8 37 138-174 174-210 (315)
139 1d7m_A Cortexillin I; coiled-c 40.9 1.3E+02 0.0046 23.8 9.7 57 114-172 15-74 (101)
140 1uo4_A General control protein 40.6 28 0.00097 22.8 3.3 26 143-168 2-27 (34)
141 1deq_A Fibrinogen (alpha chain 40.1 1.2E+02 0.004 29.7 8.9 66 99-166 54-123 (390)
142 1hjb_A Ccaat/enhancer binding 39.4 79 0.0027 24.5 6.3 42 154-195 34-75 (87)
143 1ci6_A Transcription factor AT 39.2 1E+02 0.0034 22.1 6.5 50 139-194 12-61 (63)
144 2p4v_A Transcription elongatio 38.9 71 0.0024 26.8 6.5 14 154-167 51-64 (158)
145 3c3g_A Alpha/beta peptide with 38.8 31 0.0011 22.5 3.2 25 144-168 2-26 (33)
146 1weo_A Cellulose synthase, cat 38.5 17 0.00058 28.9 2.3 44 256-299 15-69 (93)
147 2hy6_A General control protein 38.0 36 0.0012 22.3 3.5 27 143-169 2-28 (34)
148 3o0z_A RHO-associated protein 37.6 2E+02 0.0069 24.9 14.5 34 93-126 5-41 (168)
149 2fiy_A Protein FDHE homolog; F 35.8 21 0.00071 33.5 3.0 44 255-298 180-232 (309)
150 3vem_A Helicase protein MOM1; 35.4 1.8E+02 0.0063 23.7 10.8 26 91-116 33-58 (115)
151 2oxj_A Hybrid alpha/beta pepti 34.9 45 0.0015 21.9 3.6 25 144-168 3-27 (34)
152 2f23_A Anti-cleavage anti-GREA 34.9 60 0.0021 27.0 5.5 9 115-123 13-21 (156)
153 3a7p_A Autophagy protein 16; c 34.2 2.2E+02 0.0075 24.3 12.7 35 146-180 100-138 (152)
154 1gu4_A CAAT/enhancer binding p 33.9 74 0.0025 24.1 5.3 36 155-190 35-70 (78)
155 3i00_A HIP-I, huntingtin-inter 33.5 1.9E+02 0.0066 23.4 9.3 25 104-129 15-39 (120)
156 1m1j_B Fibrinogen beta chain; 33.2 3.6E+02 0.012 26.7 11.4 72 93-168 85-158 (464)
157 2yy0_A C-MYC-binding protein; 33.1 77 0.0026 22.3 4.9 26 149-174 19-44 (53)
158 1i84_S Smooth muscle myosin he 32.3 2.4E+02 0.0081 30.7 10.8 28 144-171 908-935 (1184)
159 1grj_A GREA protein; transcrip 31.1 92 0.0031 26.0 6.0 12 155-166 52-63 (158)
160 3c3f_A Alpha/beta peptide with 30.9 49 0.0017 21.7 3.2 26 143-168 2-27 (34)
161 2r2v_A GCN4 leucine zipper; co 30.8 53 0.0018 21.5 3.4 26 143-168 2-27 (34)
162 3qne_A Seryl-tRNA synthetase, 30.7 2.4E+02 0.0081 28.1 9.8 59 106-170 32-92 (485)
163 3vem_A Helicase protein MOM1; 30.5 2.2E+02 0.0076 23.2 8.9 10 147-156 66-75 (115)
164 1x79_B RAB GTPase binding effe 30.4 1.3E+02 0.0043 24.5 6.4 54 145-198 16-73 (112)
165 2bni_A General control protein 30.4 52 0.0018 21.6 3.3 26 143-168 2-27 (34)
166 2dq0_A Seryl-tRNA synthetase; 30.1 2.3E+02 0.008 27.5 9.5 84 92-181 11-101 (455)
167 1xaw_A Occludin; coiled-coil, 30.0 1.1E+02 0.0038 25.7 6.2 57 140-200 71-132 (140)
168 1lwu_B Fibrinogen beta chain; 29.5 52 0.0018 31.1 4.6 30 138-167 24-53 (323)
169 2zxx_A Geminin; coiled-coil, c 29.5 1.1E+02 0.0037 23.5 5.5 18 163-180 48-65 (79)
170 2dgc_A Protein (GCN4); basic d 29.5 1E+02 0.0034 22.2 5.2 30 142-171 30-59 (63)
171 3pwf_A Rubrerythrin; non heme 29.0 23 0.00079 30.3 1.9 17 288-304 153-169 (170)
172 3lay_A Zinc resistance-associa 28.6 1.3E+02 0.0044 26.0 6.6 9 117-125 90-98 (175)
173 1yuz_A Nigerythrin; rubrythrin 28.1 19 0.00067 31.5 1.3 15 289-303 187-201 (202)
174 1yk4_A Rubredoxin, RD; electro 27.3 29 0.001 24.3 1.8 14 290-303 37-50 (52)
175 3ghg_A Fibrinogen alpha chain; 27.1 5.2E+02 0.018 26.3 13.4 76 95-174 51-128 (562)
176 3a2a_A Voltage-gated hydrogen 27.0 1.8E+02 0.0061 21.1 5.9 14 145-158 35-48 (58)
177 2v3b_B Rubredoxin 2, rubredoxi 26.8 29 0.00098 24.7 1.7 14 290-303 38-51 (55)
178 1e8j_A Rubredoxin; iron-sulfur 26.6 26 0.0009 24.6 1.5 13 290-302 38-50 (52)
179 4rxn_A Rubredoxin; electron tr 26.2 27 0.00092 24.9 1.5 12 255-266 34-45 (54)
180 1zxa_A CGMP-dependent protein 25.7 90 0.0031 23.2 4.4 20 136-155 12-31 (67)
181 1a92_A Delta antigen; leucine 25.6 66 0.0023 22.7 3.3 23 141-163 13-35 (50)
182 2wuj_A Septum site-determining 25.4 60 0.0021 22.9 3.2 21 149-169 34-54 (57)
183 3onj_A T-snare VTI1; helix, HA 25.2 2.3E+02 0.0079 21.7 7.9 30 146-175 31-60 (97)
184 3ghg_B Fibrinogen beta chain; 25.2 2.2E+02 0.0076 28.3 8.3 70 94-166 81-151 (461)
185 3axj_A GM27569P, translin; tra 25.1 2.1E+02 0.007 25.8 7.6 89 78-173 6-95 (249)
186 2kn9_A Rubredoxin; metalloprot 24.8 36 0.0012 26.2 2.1 15 290-304 62-76 (81)
187 3q8t_A Beclin-1; autophagy, AT 24.5 2.5E+02 0.0084 21.7 7.4 47 133-179 16-63 (96)
188 3oja_A Leucine-rich immune mol 24.3 4.5E+02 0.015 24.7 14.1 10 99-108 365-374 (487)
189 3mtu_A Tropomyosin alpha-1 cha 24.1 2.2E+02 0.0076 21.1 6.8 53 138-197 5-64 (75)
190 1lko_A Rubrerythrin all-iron(I 24.1 21 0.00073 30.8 0.8 15 289-303 172-186 (191)
191 3cvf_A Homer-3, homer protein 23.7 2.4E+02 0.0084 21.4 7.1 25 150-174 14-38 (79)
192 1wlq_A Geminin; coiled-coil; 2 23.6 2.6E+02 0.0088 21.6 7.3 28 153-180 42-69 (83)
193 3kin_B Kinesin heavy chain; mo 23.5 94 0.0032 24.9 4.5 26 151-176 91-116 (117)
194 1jad_A PLC-beta, phospholipase 23.4 4.3E+02 0.015 24.1 13.9 94 95-195 30-145 (251)
195 4egx_A Kinesin-like protein KI 23.3 2.3E+02 0.008 24.1 7.3 21 257-277 115-139 (184)
196 6rxn_A Rubredoxin; electron tr 23.1 34 0.0012 23.6 1.5 13 290-302 32-44 (46)
197 1t2k_D Cyclic-AMP-dependent tr 22.7 2E+02 0.0069 20.1 6.8 34 157-197 23-56 (61)
198 2wt7_A Proto-oncogene protein 22.3 2.1E+02 0.0073 20.2 8.6 34 157-190 24-57 (63)
199 1dx8_A Rubredoxin; electron tr 22.3 34 0.0012 25.4 1.5 15 290-304 42-56 (70)
200 2wvr_A Geminin; DNA replicatio 22.0 3.7E+02 0.013 24.0 8.3 49 109-166 98-146 (209)
201 2o71_A Death domain-containing 22.0 1.1E+02 0.0038 24.4 4.6 52 140-195 41-93 (115)
202 2lri_C Autoimmune regulator; Z 21.9 35 0.0012 24.8 1.5 14 255-268 10-23 (66)
203 2qag_C Septin-7; cell cycle, c 21.6 35 0.0012 32.9 1.8 25 156-180 373-397 (418)
204 1gmj_A ATPase inhibitor; coile 21.6 2.8E+02 0.0097 21.4 8.2 21 142-162 58-78 (84)
205 2qag_B Septin-6, protein NEDD5 21.4 20 0.00068 35.0 0.0 78 99-180 324-401 (427)
206 1fio_A SSO1 protein; four heli 21.3 3.5E+02 0.012 22.3 8.4 79 114-197 18-97 (196)
207 1nkp_B MAX protein, MYC proto- 21.2 80 0.0027 23.4 3.4 17 149-165 61-77 (83)
208 2j69_A Bacterial dynamin-like 20.7 4.2E+02 0.014 26.9 9.7 65 131-195 341-410 (695)
209 2qyw_A Vesicle transport throu 20.5 3E+02 0.01 21.3 9.0 30 146-175 46-75 (102)
210 2cly_A ATP synthase B chain, m 20.3 4.5E+02 0.016 23.3 11.3 45 118-162 90-135 (214)
211 2of5_A Death domain-containing 20.1 99 0.0034 24.6 3.9 52 140-195 41-93 (114)
212 1ses_A Seryl-tRNA synthetase; 20.1 4.5E+02 0.015 25.2 9.3 82 92-181 11-96 (421)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.6e-14 Score=106.33 Aligned_cols=53 Identities=26% Similarity=0.652 Sum_probs=49.6
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEee
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALI 306 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l 306 (307)
......|+||+++.++++|+||+|+++|..|...+..||+||.+|...++||.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 44567999999999999999999999999999999999999999999999985
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.35 E-value=2e-13 Score=100.47 Aligned_cols=53 Identities=25% Similarity=0.546 Sum_probs=47.8
Q ss_pred ccccccccccccccceEEe--CCCCcccchhhHhcCC----CCCCCCccccceEEEeeC
Q 021834 255 KMVMVCKGCNSRDSCVLFL--PCRHLCACRACEAFLD----TCPVCLTPKKASIEALIF 307 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLl--PCrHlclC~~C~~~l~----~CPvCR~~i~~sV~V~l~ 307 (307)
.....|+||++++++.+++ ||+|+++|..|+..+. .||+||.+|...++||++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 3456899999999988777 9999999999998875 999999999999999986
No 3
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.33 E-value=6.8e-13 Score=101.89 Aligned_cols=54 Identities=30% Similarity=0.662 Sum_probs=50.2
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEeeC
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l~ 307 (307)
......|+||++..++++++||+|.++|..|...+..||+||.+|...+++|+.
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 345579999999999999999999999999999999999999999999999974
No 4
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.3e-13 Score=101.09 Aligned_cols=54 Identities=30% Similarity=0.762 Sum_probs=50.6
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEeeC
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l~ 307 (307)
......|+||++...+.+++||+|.++|..|...+..||+||.++...++||+|
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 345679999999999999999999999999999999999999999999999986
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.32 E-value=7.9e-13 Score=99.68 Aligned_cols=54 Identities=31% Similarity=0.774 Sum_probs=50.2
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEeeC
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l~ 307 (307)
......|.||++...+.+++||+|.++|..|...+..||+||.+|...++||+|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 455679999999999999999999999999999999999999999999999986
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.29 E-value=5.7e-13 Score=98.27 Aligned_cols=53 Identities=26% Similarity=0.521 Sum_probs=47.9
Q ss_pred ccccccccccccccceEEe--CCCCcccchhhHhcC----CCCCCCCccccceEEEeeC
Q 021834 255 KMVMVCKGCNSRDSCVLFL--PCRHLCACRACEAFL----DTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLl--PCrHlclC~~C~~~l----~~CPvCR~~i~~sV~V~l~ 307 (307)
.....|+||+++.++++++ ||+|+++|..|...+ ..||+||.+|...+++|++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 3456899999999999998 999999999999876 4699999999999999985
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.99 E-value=1.8e-10 Score=110.56 Aligned_cols=54 Identities=30% Similarity=0.779 Sum_probs=49.6
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcCCCCCCCCccccceEEEeeC
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFLDTCPVCLTPKKASIEALIF 307 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~CPvCR~~i~~sV~V~l~ 307 (307)
......|+||++...+.+++||+|.|+|..|...+..||+||.+|...++||+|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 455689999999999999999999999999999999999999999999999986
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.46 E-value=7.8e-07 Score=73.73 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=38.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccceE
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASI 302 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 302 (307)
...|.||++...+.+++||+|. +|..|... -..||+||.++....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 3579999999999999999995 89999764 378999999997654
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2e-07 Score=68.61 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=39.7
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC----CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 300 (307)
......|.||++.....+++||+|. +|..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3456789999999999999999999 899998753 689999999864
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=6.4e-08 Score=70.71 Aligned_cols=51 Identities=25% Similarity=0.468 Sum_probs=42.9
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccceEEEee
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASIEALI 306 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V~l 306 (307)
......|.||++.... +++||+|. +|..|... ...||+||.++.....+|.
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 4556799999999888 88999999 89999975 3789999999987766553
No 11
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.26 E-value=3.7e-07 Score=66.14 Aligned_cols=48 Identities=29% Similarity=0.644 Sum_probs=40.6
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHhc----CCCCCCCCccccceEEEe
Q 021834 257 VMVCKGCNSRDSC-VLFLPCRHLCACRACEAF----LDTCPVCLTPKKASIEAL 305 (307)
Q Consensus 257 ~~~C~iC~~~~a~-vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~V~ 305 (307)
...|.||++...+ ++++||+|. +|..|... -.+||+||.++...+..+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4589999999877 689999999 89999854 479999999998876544
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.9e-07 Score=68.55 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=40.1
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccceE
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASI 302 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 302 (307)
......|.||++...+.+++||+|. +|..|... ...||+||.++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 4556799999999999899999998 59999865 468999999987443
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=9.5e-07 Score=64.62 Aligned_cols=46 Identities=22% Similarity=0.482 Sum_probs=39.2
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC-------CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-------DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 300 (307)
......|.||++.....+++||+|. +|..|.... ..||+||.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4566899999999999888999999 799998653 389999999864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.13 E-value=9.4e-07 Score=62.66 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=38.4
Q ss_pred ccccccccccccc-------eEEeCCCCcccchhhHhc----CCCCCCCCcccc--ceEEEee
Q 021834 257 VMVCKGCNSRDSC-------VLFLPCRHLCACRACEAF----LDTCPVCLTPKK--ASIEALI 306 (307)
Q Consensus 257 ~~~C~iC~~~~a~-------vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~--~sV~V~l 306 (307)
...|.||++.... ++++||+|. +|..|... -.+||+||.++. ..+.+||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4589999987654 388899999 79999864 469999999987 4555543
No 15
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.10 E-value=1.7e-06 Score=59.99 Aligned_cols=44 Identities=30% Similarity=0.580 Sum_probs=36.0
Q ss_pred cccccccccccccc----eEEeCCCCcccchhhHhcC----CCCCCCCccccc
Q 021834 256 MVMVCKGCNSRDSC----VLFLPCRHLCACRACEAFL----DTCPVCLTPKKA 300 (307)
Q Consensus 256 ~~~~C~iC~~~~a~----vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~ 300 (307)
....|.||++.-.. ++++||+|. +|..|.... .+||+||.++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34689999987644 889999996 799998653 799999998764
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=6.2e-07 Score=64.53 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=37.4
Q ss_pred cccccccccccccccce-------EEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCV-------LFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~v-------lLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
......|.||++..... +++||+|. +|..|... -..||+||.+++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 45567999999976654 88999996 79999865 3799999998864
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.08 E-value=7.6e-07 Score=64.68 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=37.4
Q ss_pred cccccccccccccccce-------EEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCV-------LFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~v-------lLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
......|.||++.-... +++||+|. +|..|... -.+||+||.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34567999999876553 88999997 79999854 4799999999874
No 18
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.07 E-value=2.4e-06 Score=83.52 Aligned_cols=49 Identities=31% Similarity=0.652 Sum_probs=43.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHh-----cCCCCCCCCccccceEEEee
Q 021834 257 VMVCKGCNSRDSCVLFLPCRHLCACRACEA-----FLDTCPVCLTPKKASIEALI 306 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~-----~l~~CPvCR~~i~~sV~V~l 306 (307)
...|.||++...+.+++||+|.. |..|.. ....||+||.++.....|.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 46999999999999999999995 999986 45899999999998877654
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1.2e-06 Score=66.08 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=38.2
Q ss_pred cccccccccccccccc----eEEeCCCCcccchhhHhcC-------CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSC----VLFLPCRHLCACRACEAFL-------DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~----vlLlPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 300 (307)
......|.||++.-.. .+++||+|. +|..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4556899999998877 888999997 699998653 689999998753
No 20
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.02 E-value=2e-06 Score=62.48 Aligned_cols=48 Identities=29% Similarity=0.513 Sum_probs=38.0
Q ss_pred ccccccccccccc---ccceEEeCCCCcccchhhHhc----CCCCCCCCccccceE
Q 021834 254 TKMVMVCKGCNSR---DSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASI 302 (307)
Q Consensus 254 ~~~~~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV 302 (307)
......|.||++. ...++.+||+|. +|..|... -.+||+||.++...+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 3456789999654 356788999999 79999864 378999999987654
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.00 E-value=2.5e-06 Score=63.08 Aligned_cols=46 Identities=30% Similarity=0.548 Sum_probs=38.7
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc-----------CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----------LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----------l~~CPvCR~~i~~ 300 (307)
......|.||++...+.+.+||+|. +|..|... ...||+||.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567899999998888888899997 79999874 4589999998864
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.98 E-value=3.9e-06 Score=62.35 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=39.1
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc----------CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----------LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----------l~~CPvCR~~i~~ 300 (307)
......|.||++....-+++||+|. +|..|... ...||+||.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4556799999999888889999998 79999864 5689999999864
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=3.3e-06 Score=62.75 Aligned_cols=46 Identities=30% Similarity=0.556 Sum_probs=39.1
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc----------CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----------LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----------l~~CPvCR~~i~~ 300 (307)
......|.||++.....+++||+|. +|..|... ...||+||.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4566899999999888888899998 79999854 5799999998874
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.96 E-value=2e-06 Score=63.93 Aligned_cols=47 Identities=30% Similarity=0.603 Sum_probs=36.7
Q ss_pred ccccccccccccc---ccceEEeCCCCcccchhhHhc----CCCCCCCCccccce
Q 021834 254 TKMVMVCKGCNSR---DSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKAS 301 (307)
Q Consensus 254 ~~~~~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~s 301 (307)
......|.||++. ...+..+||+|. +|..|... -.+||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 4456799999654 456677899997 79999864 37999999998753
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2.3e-06 Score=63.05 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=38.6
Q ss_pred cccccccccccccccceEEe-CCCCcccchhhHhc----CCCCCCCCccccce
Q 021834 254 TKMVMVCKGCNSRDSCVLFL-PCRHLCACRACEAF----LDTCPVCLTPKKAS 301 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~----l~~CPvCR~~i~~s 301 (307)
......|.||++...+.+.+ ||+|. +|..|... ...||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45578999999988877666 99998 59999854 47999999998754
No 26
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.95 E-value=5.9e-06 Score=57.28 Aligned_cols=43 Identities=28% Similarity=0.514 Sum_probs=35.0
Q ss_pred cccccccccccccc---eEEeC-CCCcccchhhHhc----CCCCCCCCcccc
Q 021834 256 MVMVCKGCNSRDSC---VLFLP-CRHLCACRACEAF----LDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~~a~---vlLlP-CrHlclC~~C~~~----l~~CPvCR~~i~ 299 (307)
....|.||++.-.. ++.+| |+|. +|..|... -.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34689999987665 77788 9998 79999865 379999998874
No 27
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=2.4e-06 Score=62.89 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=38.2
Q ss_pred cccccccccccccc---cceEEeCCCCcccchhhHhc----CCCCCCCCccccceEE
Q 021834 254 TKMVMVCKGCNSRD---SCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKASIE 303 (307)
Q Consensus 254 ~~~~~~C~iC~~~~---a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~sV~ 303 (307)
......|.||++.. ..+..+||+|. +|..|... -.+||+||.++.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 44567999999863 45667799998 89999864 3699999999876543
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=4.3e-06 Score=59.32 Aligned_cols=45 Identities=29% Similarity=0.772 Sum_probs=37.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-CCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-DTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-~~CPvCR~~i~~ 300 (307)
.....|.||++...+-+++||+|. +|..|.... ..||+||.++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 345689999999988899999998 699998653 689999998763
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=5.6e-06 Score=61.26 Aligned_cols=46 Identities=26% Similarity=0.520 Sum_probs=36.3
Q ss_pred cccccccccccc---ccceEEeCCCCcccchhhHhc----CCCCCCCCccccce
Q 021834 255 KMVMVCKGCNSR---DSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKAS 301 (307)
Q Consensus 255 ~~~~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~s 301 (307)
.....|.||++. ...+..+||+|. +|..|... -.+||+||.++...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 445789999965 345688999998 89999864 37999999988753
No 30
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.84 E-value=5.2e-06 Score=64.22 Aligned_cols=46 Identities=30% Similarity=0.539 Sum_probs=36.7
Q ss_pred ccccccccccccccc---eEEeCCCCcccchhhHhc----CCCCCCCCccccce
Q 021834 255 KMVMVCKGCNSRDSC---VLFLPCRHLCACRACEAF----LDTCPVCLTPKKAS 301 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~---vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~s 301 (307)
.....|.||++.-.. ++.+||+|. +|..|... -.+||+||.++...
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 456789999876554 888999996 89999854 47999999988653
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.80 E-value=6.1e-06 Score=61.27 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=37.8
Q ss_pred cccccccccccccccceEEeC-CCCcccchhhHhcC------CCCCCCCcccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLP-CRHLCACRACEAFL------DTCPVCLTPKK 299 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlP-CrHlclC~~C~~~l------~~CPvCR~~i~ 299 (307)
......|.||++.-.+-+.+| |+|. +|..|.... ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 456789999999999999999 9997 799998542 58999999754
No 32
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.79 E-value=4.9e-06 Score=66.39 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=38.4
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC-----CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 300 (307)
......|.||++.-..-+.+||+|. +|..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3445799999999888888899998 799998653 489999998763
No 33
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=58.35 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=38.5
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
......|.||++...+.+.+||+|. +|..|... ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4556899999998888788899999 69999863 3589999999864
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.77 E-value=7.7e-06 Score=58.91 Aligned_cols=43 Identities=30% Similarity=0.720 Sum_probs=33.0
Q ss_pred ccccccccc----ccc-ceEEeCCCCcccchhhHhcC-----CCCCCCCccccc
Q 021834 257 VMVCKGCNS----RDS-CVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKA 300 (307)
Q Consensus 257 ~~~C~iC~~----~~a-~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 300 (307)
...|.||++ .+. .++++||+|. +|..|.... ..||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 358999999 222 2256899998 699998654 579999999864
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.72 E-value=1.8e-05 Score=64.01 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
.....|.||++.-.+-+.+||+|. +|..|... ...||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 445799999999988888999998 69999853 3499999999875
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=7.1e-06 Score=57.22 Aligned_cols=40 Identities=28% Similarity=0.579 Sum_probs=33.9
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc-------CCCCCCC
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-------LDTCPVC 294 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-------l~~CPvC 294 (307)
......|.||++...+.+++||+|. +|..|... ...||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 4556799999999988888999999 79999754 3689998
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.70 E-value=6.6e-06 Score=62.93 Aligned_cols=48 Identities=25% Similarity=0.537 Sum_probs=37.5
Q ss_pred cccccccccccccc--cceEEeC--CCCcccchhhHhcC-----CCCCCCCccccceE
Q 021834 254 TKMVMVCKGCNSRD--SCVLFLP--CRHLCACRACEAFL-----DTCPVCLTPKKASI 302 (307)
Q Consensus 254 ~~~~~~C~iC~~~~--a~vlLlP--CrHlclC~~C~~~l-----~~CPvCR~~i~~sV 302 (307)
......|.||++.. .++.++| |+|. +|..|...+ ..||+||.++....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34567999999965 3456766 9998 799998664 48999999987654
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.67 E-value=1.4e-05 Score=61.01 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=38.0
Q ss_pred ccccccccccccccccceEEeC-CCCcccchhhHhcC------CCCCCCCccc
Q 021834 253 STKMVMVCKGCNSRDSCVLFLP-CRHLCACRACEAFL------DTCPVCLTPK 298 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlP-CrHlclC~~C~~~l------~~CPvCR~~i 298 (307)
.......|.||++.-.+-+.+| |+|. +|..|.... ..||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3566789999999888888999 9999 699997532 5999999986
No 39
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.64 E-value=1.6e-05 Score=62.42 Aligned_cols=47 Identities=26% Similarity=0.489 Sum_probs=39.2
Q ss_pred ccccccccccccccccceEE-eCCCCcccchhhHhc----C-CCCCCCCccccc
Q 021834 253 STKMVMVCKGCNSRDSCVLF-LPCRHLCACRACEAF----L-DTCPVCLTPKKA 300 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~~~----l-~~CPvCR~~i~~ 300 (307)
.......|.||++....-+. +||+|. +|..|-.. - ..||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35567899999999988888 999999 69999864 2 589999999753
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.64 E-value=0.00011 Score=64.67 Aligned_cols=46 Identities=13% Similarity=-0.160 Sum_probs=37.9
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
.+....|+||++--.+=|++||||. +|..|-.. -.+||+|+.+.+.
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 5667899999999988888999997 69999543 2369999998764
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.62 E-value=1.6e-05 Score=62.52 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=37.6
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC-------CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-------DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-------~~CPvCR~~i~~ 300 (307)
......|.||++.....+.+||+|. +|..|.... ..||+||.++..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred ccCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3446799999998888888999997 699998542 389999998864
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.61 E-value=2.4e-05 Score=57.96 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=39.4
Q ss_pred ccccccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 253 STKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
+.+....|.||++--.+-+.+||+|. +|..|-.. ..+||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35667899999998888888999999 69999753 4689999999864
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.58 E-value=2.8e-05 Score=61.36 Aligned_cols=46 Identities=20% Similarity=0.456 Sum_probs=38.6
Q ss_pred cccccccccccccccceEEe-CCCCcccchhhHhcC----CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFL-PCRHLCACRACEAFL----DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l----~~CPvCR~~i~~ 300 (307)
......|.||++.-.+-+.+ ||+|. +|..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 45567999999988887777 99998 699998543 789999999875
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.58 E-value=2.7e-05 Score=60.48 Aligned_cols=45 Identities=20% Similarity=0.499 Sum_probs=37.2
Q ss_pred ccccccccccccccceEEe-CCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRDSCVLFL-PCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
.....|.||++.-.+-+.+ ||+|. +|..|... -..||+||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4467999999988877777 99998 69999754 3689999998874
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.53 E-value=3.1e-05 Score=65.58 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=38.4
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhcC-----CCCCCCCccccce
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKAS 301 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~s 301 (307)
.....|.||++...+-+.+||+|. +|..|.... ..||+||.++...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345789999999999899999997 699998542 4899999998754
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.53 E-value=3.2e-05 Score=65.44 Aligned_cols=45 Identities=20% Similarity=0.415 Sum_probs=36.9
Q ss_pred cccccccccccccccceEEe-CCCCcccchhhHhc-----CCCCCCCCcccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFL-PCRHLCACRACEAF-----LDTCPVCLTPKK 299 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~-----l~~CPvCR~~i~ 299 (307)
......|.||++.-.+.+.+ ||+|. +|..|... -..||+||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34567999999988877776 99997 69999854 357999999885
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.44 E-value=4.9e-05 Score=61.06 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=38.7
Q ss_pred cccccccccccccccceEEe-CCCCcccchhhHhcC--CCCCCCCcccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFL-PCRHLCACRACEAFL--DTCPVCLTPKK 299 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l--~~CPvCR~~i~ 299 (307)
......|.||++.-.+-+.+ ||+|. +|..|.... ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred chhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 45678999999999888888 99998 699998765 58999999885
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.43 E-value=6.2e-05 Score=60.51 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=39.0
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC-----CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 300 (307)
......|.||++....-+.+||+|. +|..|.... .+||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4556799999999888888999998 799998652 499999999875
No 49
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.0001 Score=52.51 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=33.9
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhc-------CCCCCCC
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-------LDTCPVC 294 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-------l~~CPvC 294 (307)
......|.||++...+.+++||+|. +|..|... ...||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 4566899999999998888999999 79999754 3489998
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.35 E-value=8.9e-05 Score=58.68 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.3
Q ss_pred cccccccccccc------------------cceEEeCCCCcccchhhHhc---------CCCCCCCCccccc
Q 021834 256 MVMVCKGCNSRD------------------SCVLFLPCRHLCACRACEAF---------LDTCPVCLTPKKA 300 (307)
Q Consensus 256 ~~~~C~iC~~~~------------------a~vlLlPCrHlclC~~C~~~---------l~~CPvCR~~i~~ 300 (307)
....|.||++.- ..+.++||+|. +|..|-.. -.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 346899998864 23448899997 79999643 3599999988753
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.30 E-value=7.4e-05 Score=59.50 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=36.5
Q ss_pred ccccccccccccccce-------EEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRDSCV-------LFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~v-------lLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
.....|.||++.-..- +.+||+|. +|..|-.. -.+||+||.++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4467999999876554 88999996 79999854 3699999999874
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.29 E-value=0.0001 Score=58.80 Aligned_cols=45 Identities=27% Similarity=0.504 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
.....|.||++...+.+.+||+|. +|..|... -..||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 346789999999998888999999 69999753 3689999999864
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.28 E-value=0.00015 Score=57.74 Aligned_cols=51 Identities=24% Similarity=0.445 Sum_probs=39.5
Q ss_pred ccccccccccccccce-------EEeCCCCcccchhhHhc----CCCCCCCCcccc--ceEEEee
Q 021834 255 KMVMVCKGCNSRDSCV-------LFLPCRHLCACRACEAF----LDTCPVCLTPKK--ASIEALI 306 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~v-------lLlPCrHlclC~~C~~~----l~~CPvCR~~i~--~sV~V~l 306 (307)
.....|.||++.-... +.+||+|. +|..|... ..+||+||.++. ..+.+||
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 3456899999876553 88899999 79999864 589999999976 4455553
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0003 Score=53.22 Aligned_cols=29 Identities=21% Similarity=0.575 Sum_probs=22.7
Q ss_pred EEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 271 LFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 271 lLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
++.||+|. ++..|-.. -.+||+||.++..
T Consensus 44 ~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 44 VWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp EEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 44459998 79999863 3799999998753
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.78 E-value=0.0006 Score=57.68 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=39.2
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC-----CCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-----DTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i~~ 300 (307)
......|.||++--.+-+.+||+|. +|..|.... .+||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4567899999998888888999998 699998653 499999999876
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.77 E-value=0.00062 Score=60.49 Aligned_cols=47 Identities=13% Similarity=-0.143 Sum_probs=39.0
Q ss_pred ccccccccccccccccceEEeCCCCcccchhhHhc-----CCCCCCCCccccc
Q 021834 253 STKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF-----LDTCPVCLTPKKA 300 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-----l~~CPvCR~~i~~ 300 (307)
+.+....|.||.+--.+=|.+||+|. +|..|-.. -.+||+|+.+++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34667899999999999999999998 69999653 2459999999864
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.70 E-value=0.00023 Score=59.68 Aligned_cols=44 Identities=20% Similarity=0.520 Sum_probs=36.9
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC-----CCCCCCCccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL-----DTCPVCLTPK 298 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~CPvCR~~i 298 (307)
......|.||++--..-+.+||+|. +|..|-... ..||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567899999998877788899998 699998653 4899999975
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.60 E-value=0.00089 Score=52.94 Aligned_cols=46 Identities=15% Similarity=-0.037 Sum_probs=38.9
Q ss_pred cccccccccccccccceEEeCCC-CcccchhhHhc----CCCCCCCCccccc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCR-HLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCr-HlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
.+....|.||++--.+=|.+||+ |. +|..|-.. ..+||+|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 56678999999999999999999 87 69999643 3689999998764
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.50 E-value=0.00079 Score=51.59 Aligned_cols=47 Identities=11% Similarity=-0.129 Sum_probs=39.8
Q ss_pred ccccccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 253 STKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
..+....|.||++--.+=+.+||||. +|..|-.. ..+||+|+.++..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 35677899999999999999999998 79999643 4799999998764
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.45 E-value=0.002 Score=51.88 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=32.2
Q ss_pred cccccccccccc------------------ceEEeCCCCcccchhhHhc----CCCCCCCCcccc
Q 021834 257 VMVCKGCNSRDS------------------CVLFLPCRHLCACRACEAF----LDTCPVCLTPKK 299 (307)
Q Consensus 257 ~~~C~iC~~~~a------------------~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~ 299 (307)
...|.||++.-. .++++||+|. ++..|-.. -.+||+||.+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 457888876532 3688999998 79999865 479999999853
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.38 E-value=0.0011 Score=52.67 Aligned_cols=47 Identities=11% Similarity=-0.104 Sum_probs=40.0
Q ss_pred ccccccccccccccccceEEeCCCCcccchhhHhc----CCCCCCCCccccc
Q 021834 253 STKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAF----LDTCPVCLTPKKA 300 (307)
Q Consensus 253 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~~ 300 (307)
..+....|.||++--.+=|.+||+|. +|..|-.. ..+||+|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 35678899999999999999999998 79999643 4699999998764
No 62
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.19 E-value=0.0034 Score=50.96 Aligned_cols=45 Identities=24% Similarity=0.589 Sum_probs=32.3
Q ss_pred ccccccccc-cceEEeCCCCcccchhhHh-----cCCCCCCCCccccceEEE
Q 021834 259 VCKGCNSRD-SCVLFLPCRHLCACRACEA-----FLDTCPVCLTPKKASIEA 304 (307)
Q Consensus 259 ~C~iC~~~~-a~vlLlPCrHlclC~~C~~-----~l~~CPvCR~~i~~sV~V 304 (307)
.|..|.-.- .-.-++||.| ++|..|+. ..+.||.|+.+|...-++
T Consensus 3 fC~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 455564432 2345689999 68999994 458999999999876543
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.55 E-value=0.0083 Score=45.87 Aligned_cols=45 Identities=22% Similarity=0.522 Sum_probs=33.2
Q ss_pred ccccccccccccc--cceEEeCCC-----CcccchhhHhc------CCCCCCCCccccc
Q 021834 255 KMVMVCKGCNSRD--SCVLFLPCR-----HLCACRACEAF------LDTCPVCLTPKKA 300 (307)
Q Consensus 255 ~~~~~C~iC~~~~--a~vlLlPCr-----HlclC~~C~~~------l~~CPvCR~~i~~ 300 (307)
.....|.||++.. ...+++||+ |. +-..|-.. ..+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4456899999643 345679997 87 58888754 2589999998754
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.40 E-value=0.0028 Score=52.11 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=0.4
Q ss_pred cccccccccccc------------------ceEEeCCCCcccchhhHhc----CCCCCCCCcccc
Q 021834 257 VMVCKGCNSRDS------------------CVLFLPCRHLCACRACEAF----LDTCPVCLTPKK 299 (307)
Q Consensus 257 ~~~C~iC~~~~a------------------~vlLlPCrHlclC~~C~~~----l~~CPvCR~~i~ 299 (307)
...|.||++.-. .++++||+|. ++..|-.. -.+||+||.+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 358999986532 3455799998 79999865 379999999853
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.94 E-value=0.007 Score=46.47 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=29.8
Q ss_pred ccccccccccccc--c-eEEeCCCCcccchhhHhc------------CCCCCC--CCcc
Q 021834 256 MVMVCKGCNSRDS--C-VLFLPCRHLCACRACEAF------------LDTCPV--CLTP 297 (307)
Q Consensus 256 ~~~~C~iC~~~~a--~-vlLlPCrHlclC~~C~~~------------l~~CPv--CR~~ 297 (307)
....|.||++... . +.+.||+|. +|..|-.. .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999997643 2 233489998 79999532 138999 9987
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.90 E-value=0.6 Score=41.48 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=54.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH----H
Q 021834 111 ISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAM----V 186 (307)
Q Consensus 111 ~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~----a 186 (307)
+.+.+.|+..|.|-.. .++.| | .|.|.||+.+.+++.+|..++.+|..|...|+.+...--.- +
T Consensus 23 ~q~~~~le~El~EFqe-sSrEL----E-------~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 23 KQSFQEARDELVEFQE-GSREL----E-------AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777766542 33333 2 27788999999999999999999999999999888765433 6
Q ss_pred HHHHHhHHHHH
Q 021834 187 FSLNNSLEQLK 197 (307)
Q Consensus 187 ~~Lr~~LqQv~ 197 (307)
+.|...|.++.
T Consensus 91 ~~Lq~el~~l~ 101 (189)
T 2v71_A 91 SVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.52 E-value=0.02 Score=44.36 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=34.6
Q ss_pred cccccccccccccccceEEeC-CCCcccchhhHhc----------CCCCCC--CCcc
Q 021834 254 TKMVMVCKGCNSRDSCVLFLP-CRHLCACRACEAF----------LDTCPV--CLTP 297 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlP-CrHlclC~~C~~~----------l~~CPv--CR~~ 297 (307)
......|.||++--.+=|.+| |+|. +|..|-.. ..+||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 355689999999999888897 9998 69999643 249999 9854
No 68
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.33 E-value=0.11 Score=35.79 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
+.|.....+..+|.|||+|+..|..|++.-+.+.+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 33444445567999999999999999999877654
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.24 E-value=0.11 Score=37.54 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=29.3
Q ss_pred cccccccccccccceEEeCCCCcc----cchhhHh------cCCCCCCCCcccc
Q 021834 256 MVMVCKGCNSRDSCVLFLPCRHLC----ACRACEA------FLDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~~a~vlLlPCrHlc----lC~~C~~------~l~~CPvCR~~i~ 299 (307)
....|+||++....-++.||.+.- +=..|.. .-.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 356899999876666789986421 1223442 2478999998865
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.092 Score=49.02 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=35.7
Q ss_pred cccccccccccccccceEE-eCCCCcccchhhHhcC------CCCCC--CCcccc
Q 021834 254 TKMVMVCKGCNSRDSCVLF-LPCRHLCACRACEAFL------DTCPV--CLTPKK 299 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~~~l------~~CPv--CR~~i~ 299 (307)
......|.||++.-.+=|. .+|+|. +|+.|-... ..||+ |+.++.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4567899999998876665 599996 799997542 37999 998764
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=88.77 E-value=1.1 Score=43.43 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=52.4
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
.++.++++||+.+.++..+|++.++++..|...+.......|..---|++.|+.+...
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4688999999999999999999999999999999999999999999999999887643
No 72
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.89 E-value=9.9 Score=31.02 Aligned_cols=87 Identities=11% Similarity=0.204 Sum_probs=66.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021834 110 IISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSL 189 (307)
Q Consensus 110 i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~L 189 (307)
|+..+++|+..+++-|.+...+ ..-.....-....||...+..+-.|..+||.|+..|...-+.++..-+....+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~-----~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQ-----YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 4566777777777776655332 11122334456778999999999999999999999999999999888888888
Q ss_pred HHhHHHHHHHhh
Q 021834 190 NNSLEQLKEKAF 201 (307)
Q Consensus 190 r~~LqQv~~~~~ 201 (307)
-+.|.++++...
T Consensus 83 E~k~n~aiErna 94 (111)
T 2v66_B 83 EQRLNQAIERNA 94 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888763
No 73
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.56 E-value=2.4 Score=30.94 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
..+.+.+++.+..+|.+|+.++.+|..|.+.|..+-.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888899999999999999999999877643
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.23 E-value=26 Score=34.12 Aligned_cols=65 Identities=15% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 132 LLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 132 ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
.+..+...+..+...++.++.+..+...++.+.++++..|...|...-+.......-|+..++..
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34444445555555566666666666666666667777777777777766666666555554443
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.81 E-value=17 Score=35.48 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=7.5
Q ss_pred HHHHHHhHHHHHHH
Q 021834 186 VFSLNNSLEQLKEK 199 (307)
Q Consensus 186 a~~Lr~~LqQv~~~ 199 (307)
.+.++..|.++.+.
T Consensus 567 ~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 567 TSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33446666665553
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.72 E-value=6.5 Score=37.57 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 021834 104 QEIDHYIISQNERLRLVLQEQRKQQ 128 (307)
Q Consensus 104 ~EID~~i~~q~ErLR~~L~E~r~Rh 128 (307)
..+.++|+-+.+++++.+.+.|++-
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 3455566666666666666666543
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.79 E-value=37 Score=32.41 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=45.3
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
...+.+.|++++.+...+..++++++..|+..-...+.+.+..+..-+.+|+.+..+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 345566677777888888888899999999998888888888888888888776554
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=81.60 E-value=0.8 Score=32.88 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.7
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhcC----CCCCCCCccccc
Q 021834 257 VMVCKGCNSRDSCVLFL-PCRHLCACRACEAFL----DTCPVCLTPKKA 300 (307)
Q Consensus 257 ~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l----~~CPvCR~~i~~ 300 (307)
...|.+|++--.+=++. ||+|. +++.|-... .+||+++.+.+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 36899999988888888 99998 688887542 679999988754
No 79
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=81.28 E-value=11 Score=29.61 Aligned_cols=85 Identities=8% Similarity=0.089 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH------HHHHHHhHH
Q 021834 112 SQNERLRLVLQEQRKQQLEVLLKKIEIKTSALL-RQKDEEIAKATNRTMELEILLKKLEMESQAW------QRIAQENEA 184 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rL-ReKe~Eier~~rrn~ELeErlrqL~~E~Q~W------q~~Ak~nEA 184 (307)
...++|+.-+.+..+.|.+.|-++-. ...+ ++.|.-+..+.++...+..+|+.|..++..= -...+...+
T Consensus 19 ~~i~~i~~~v~~l~~~~~~~L~~~~~---~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~ 95 (127)
T 1ez3_A 19 GFIDKIAENVEEVKRKHSAILASPNP---DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKT 95 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Confidence 34456777888888888876542211 1122 2345566667777888888888887776531 112356678
Q ss_pred HHHHHHHhHHHHHHH
Q 021834 185 MVFSLNNSLEQLKEK 199 (307)
Q Consensus 185 ~a~~Lr~~LqQv~~~ 199 (307)
.+++|+..|..+...
T Consensus 96 q~~~L~~kf~e~m~~ 110 (127)
T 1ez3_A 96 QHSTLSRKFVEVMSE 110 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999987653
No 80
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=79.22 E-value=8 Score=30.65 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=34.0
Q ss_pred ccCCCCCchHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhhhHHH
Q 021834 84 QNFDSMPFSQSLALQAEKQRQ-EIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQK-DEEIAKATNRTMEL 161 (307)
Q Consensus 84 q~~~s~~~s~~l~~~l~qQ~~-EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReK-e~Eier~~rrn~EL 161 (307)
++|++++ .+ ++.++.|+. |.|+=|..|.-.|- +.|..|--+|..= +++|++ |+||.++++ ||
T Consensus 21 ~Efe~~~--~e-~~~~k~q~~~eyE~ki~~Qi~Emq---------~Ir~tvyeLE~~h-~kmKq~YEeEI~rLr~---eL 84 (92)
T 3vp9_A 21 QEFLQVS--QE-ANTYRLQNQKDYDFKMNQQLAEMQ---------QIRNTVYERELTH-RKMKDAYEEEIKHLKL---GL 84 (92)
T ss_dssp TTTTTTH--HH-HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHH--HH-HHHHHHhhcchHHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HH
Confidence 3466643 44 233444443 77776666533221 2233444444432 456655 778877776 77
Q ss_pred HHHHHH
Q 021834 162 EILLKK 167 (307)
Q Consensus 162 eErlrq 167 (307)
|.|=.+
T Consensus 85 e~r~~q 90 (92)
T 3vp9_A 85 EQRDHQ 90 (92)
T ss_dssp TC----
T ss_pred HHcCCC
Confidence 766444
No 81
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=79.19 E-value=20 Score=27.62 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhh----HHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 131 VLLKKIEIKTSALLRQK----DEEIAKATNRTMELE-------ILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 131 ~ll~avE~~~~~rLReK----e~Eier~~rrn~ELe-------ErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
+|++|||.++-+||||+ -+||+.+++-..||. +-+.+|..|-..|.. .+..|+...+.
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~-------ni~~lk~K~~E 71 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK-------NIELLKKKDEE 71 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 68899999999999876 678888888777765 445555555555433 34445555444
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=78.72 E-value=0.6 Score=37.54 Aligned_cols=49 Identities=22% Similarity=0.621 Sum_probs=39.6
Q ss_pred cccccccccccccccceEEeCCCCcccchhhHhcC----CCCCCCCccccceEEE
Q 021834 254 TKMVMVCKGCNSRDSCVLFLPCRHLCACRACEAFL----DTCPVCLTPKKASIEA 304 (307)
Q Consensus 254 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~CPvCR~~i~~sV~V 304 (307)
.-...-|+.|+-...+.| -|.-..+|..|-..| +.||||..+....|+|
T Consensus 25 ~~G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 455679999998887654 588777999999876 7999999988777654
No 83
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=78.10 E-value=6.8 Score=32.01 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHhHHHHHH
Q 021834 155 TNRTMELEILLKKLEMESQAWQRIAQENEAMV----FSLNNSLEQLKE 198 (307)
Q Consensus 155 ~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a----~~Lr~~LqQv~~ 198 (307)
-+++.+|..++.+|..|...|+.+.....+.+ ++|...|.++..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~ 49 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998776654 445555555543
No 84
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=78.07 E-value=4.5 Score=26.98 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.2
Q ss_pred HHHHhhHHHHHHHHhhhHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEI 163 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeE 163 (307)
+-+-+|++||++...+|.+|.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 4566899999999999999976
No 85
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.88 E-value=17 Score=30.36 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
-++.+...|++.+.+++.+|++++.+|++|..
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999987653
No 86
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.69 E-value=21 Score=28.76 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 021834 141 SALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQR 177 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~ 177 (307)
..|+|+.+.||++++..|..| -.|+..|+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L-------~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQL-------LTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH-------HHHHHhhcc
Confidence 578888888888888888754 467888865
No 87
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=77.37 E-value=9.1 Score=27.48 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=14.2
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
+.+.+.+++.+...|.+|...+..|..|..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555544443
No 88
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=74.67 E-value=26 Score=28.26 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=21.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021834 155 TNRTMELEILLKKLEMESQAWQRIAQENE 183 (307)
Q Consensus 155 ~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nE 183 (307)
..+..||+..|++|.+|||. +-++|+
T Consensus 64 ~~~v~eLe~everL~~ENq~---L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQ---LLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 56888999999999999987 555554
No 89
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=74.33 E-value=4.3 Score=26.80 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
+|--+--.+|+.+.|+|+-|++++|.|+
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3444556799999999999999999874
No 90
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.73 E-value=2.1 Score=32.86 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQAWQRIA 179 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~A 179 (307)
-+|+|-++.+..||++|+.+|+.||..-+..|
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35777788899999999999999998755444
No 91
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.34 E-value=24 Score=25.34 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=27.6
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQE 181 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~ 181 (307)
+-+.+.+++.+...|.+|...|..|..|...|..+...
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777888888888888888888777766543
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.17 E-value=22 Score=27.56 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=21.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021834 154 ATNRTMELEILLKKLEMESQAWQRIAQE 181 (307)
Q Consensus 154 ~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~ 181 (307)
++.....|+....+|..|-..|+.+-+.
T Consensus 46 ~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 46 AQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445888888999999999988663
No 93
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.70 E-value=31 Score=26.81 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
+.+++.+...|..|..+|.+|..|.+.++.+-.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567777777777777777666555443
No 94
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=69.25 E-value=23 Score=31.85 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021834 114 NERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLN 190 (307)
Q Consensus 114 ~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr 190 (307)
.++-|..|+|+||.- |-.++ +|.+++..+...|+|.+..|..|+..-+.+|..-+.+|..|.
T Consensus 95 se~YWk~lAE~RR~A---L~eaL------------eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 95 SSQYWKEVAEKRRKA---LYEAL------------KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp CTTHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999832 33333 344555555555666666666666666666664444555543
No 95
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=68.55 E-value=11 Score=25.90 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
.++---+.||++...+..+|..+++.|+..+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444568899999999999999999998764
No 96
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.54 E-value=28 Score=28.83 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
+++.+.+.||...+.+..+.++.+.+|..+++.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 356677777777777777777777777777764
No 97
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.70 E-value=74 Score=28.33 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
+-+.+...||+.+.++...||+.+..+..+..........-++....++..|....
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666777778888888877777777776666666666666666665555443
No 98
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.04 E-value=34 Score=24.24 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMESQAWQRI 178 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~ 178 (307)
..+.+.+++.+...|.+|...+..|..|...|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777778888888888888887776654
No 99
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.87 E-value=7.9 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=23.1
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
|+.+.|+.+|.+-.++++||..+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56778888999999999999877666543
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.38 E-value=14 Score=28.13 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=16.4
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
||+||+-|+...++..|+++.|+.|..|-
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555555555555554443
No 101
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=64.21 E-value=32 Score=27.35 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 126 KQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 126 ~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
++.+....+-+...|-.-.++.++||.++.++...|| .+.-++-.|+.+|-. |.+.|+.
T Consensus 31 QqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~~-------L~~eLe~ 89 (96)
T 1t3j_A 31 QQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKAVQ-------LESELEN 89 (96)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHH-------HHHHHHH
Confidence 3444444555555666667788999999999888888 455556667666653 5555554
No 102
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=64.20 E-value=1.2 Score=43.45 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=32.1
Q ss_pred ccccccccccccccc------eE--EeCCCCcccchhhHhc---------------CCCCCCCCccccceEEE
Q 021834 255 KMVMVCKGCNSRDSC------VL--FLPCRHLCACRACEAF---------------LDTCPVCLTPKKASIEA 304 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~------vl--LlPCrHlclC~~C~~~---------------l~~CPvCR~~i~~sV~V 304 (307)
.....|.||++.-.. .+ -.+|+|. +=..|-.. ...||+||.+|+.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~ 377 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA 377 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence 346799999975443 11 2368877 45666522 15799999999876543
No 103
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=64.13 E-value=37 Score=28.52 Aligned_cols=85 Identities=7% Similarity=0.096 Sum_probs=49.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHHHHhHH
Q 021834 112 SQNERLRLVLQEQRKQQLEVLLKKIEIKTSALL-RQKDEEIAKATNRTMELEILLKKLEMESQA------WQRIAQENEA 184 (307)
Q Consensus 112 ~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rL-ReKe~Eier~~rrn~ELeErlrqL~~E~Q~------Wq~~Ak~nEA 184 (307)
...++|+.-+.+..+.|.+.|.++-... .+ ++.+.-+..+.++...+..+|+.|..++.. .-...+...+
T Consensus 50 ~~i~~i~~~v~~l~~~~~~~L~~~~~~~---~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~ 126 (180)
T 1s94_A 50 AMIDKISDNVDAVKKKHSDILSAPQTDD---QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKT 126 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 3455677777777777776655322222 22 233445556677777888888888765432 1112244456
Q ss_pred HHHHHHHhHHHHHHH
Q 021834 185 MVFSLNNSLEQLKEK 199 (307)
Q Consensus 185 ~a~~Lr~~LqQv~~~ 199 (307)
..++|...|..++..
T Consensus 127 q~~~L~~kf~~~m~~ 141 (180)
T 1s94_A 127 QYSTISRKFVEVMSD 141 (180)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788999999887743
No 104
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=64.05 E-value=31 Score=25.80 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 021834 148 DEEIAKATNRTMELEILLKKLEMESQ 173 (307)
Q Consensus 148 e~Eier~~rrn~ELeErlrqL~~E~Q 173 (307)
+.+.+.+...|..|-+.+..|..|..
T Consensus 42 e~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 42 KELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555544
No 105
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=63.18 E-value=40 Score=26.23 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHhhhHHHHHHH
Q 021834 115 ERLRLVLQEQRKQQLEVLLKKIEI--KTSALLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 115 ErLR~~L~E~r~Rh~r~ll~avE~--~~~~rLReKe~Eier~~rrn~ELeErl 165 (307)
++-+..|+|+||.- |-.++++ ..-+.+-.|++||.++...|.+|.+-+
T Consensus 19 e~YWk~lAE~Rr~A---L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 19 SQYWKEVAEQRRKA---LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp CTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777643 3333332 234556667778777777777766544
No 106
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=62.48 E-value=47 Score=33.66 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=13.5
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlr 166 (307)
+.+-+..+||+.+.+-.+++.||+.
T Consensus 321 r~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 321 RNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666555555555543
No 107
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.96 E-value=12 Score=28.06 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=27.3
Q ss_pred ccccccccccccceE-EeCCCCcccchhhHhc------CCCCCCCCccccce
Q 021834 257 VMVCKGCNSRDSCVL-FLPCRHLCACRACEAF------LDTCPVCLTPKKAS 301 (307)
Q Consensus 257 ~~~C~iC~~~~a~vl-LlPCrHlclC~~C~~~------l~~CPvCR~~i~~s 301 (307)
...|.||++--..-. ...|+|. +=..|..+ -.+||+||.+....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 468999997654222 2255555 33456542 26899999887643
No 108
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.53 E-value=8.4 Score=25.64 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=20.1
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
|+.+.|+-+|..-.++++|+..+.+|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56677888888888999998766555
No 109
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.42 E-value=46 Score=25.14 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=20.6
Q ss_pred HHHHHhhHHHHHHHHhhhHHHHHHHHH
Q 021834 141 SALLRQKDEEIAKATNRTMELEILLKK 167 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn~ELeErlrq 167 (307)
..+|++|.+||++++...--|-.+|-+
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999998876666655543
No 110
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.15 E-value=40 Score=25.97 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 115 ERLRLVLQEQRKQQLEVLLKKIEI--KTSALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 115 ErLR~~L~E~r~Rh~r~ll~avE~--~~~~rLReKe~Eier~~rrn~ELeErlr 166 (307)
++-+..|.|+||. +|-.++++ ..-+.+-+|++||.++...|..|.|-+.
T Consensus 15 e~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 15 SQYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp CTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777763 34444444 2335566778888777777766655443
No 111
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.10 E-value=75 Score=26.23 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=11.7
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILL 165 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErl 165 (307)
+|+++++|+|+.++.|.+|.-|+
T Consensus 86 ~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 86 KLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchhhhhHh
Confidence 45555555555555555554444
No 112
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=54.36 E-value=23 Score=22.64 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 147 KDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 147 Ke~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
.|+|+-+++---.+|++|+.+|+.-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667777777777888888877765553
No 113
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.28 E-value=45 Score=27.27 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 021834 145 RQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQL 196 (307)
Q Consensus 145 ReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv 196 (307)
-++|..|+...+....|-..+..+-.|+|.|..-.+. -++.|.+.|++-
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~---~i~~Le~eL~e~ 59 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKG---HVSELEADLAEQ 59 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3566677777777777777777777777776655553 555666665553
No 114
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=53.86 E-value=32 Score=31.06 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNN 191 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~ 191 (307)
+++.+.||.+||++++.|-. .|+.||++.+-++.
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~-------~A~~Ne~l~~~~~~ 107 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMD-------VARENDRLFDKTRR 107 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44555567777777766643 56666666655554
No 115
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.26 E-value=1.3e+02 Score=32.77 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=12.7
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~ 169 (307)
+.++++++..+...+||++..++.
T Consensus 995 ~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 995 KLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554
No 116
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=50.32 E-value=1.8e+02 Score=28.38 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhH-HHHHH------HH
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTM-ELEIL------LK 166 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~-ELeEr------lr 166 (307)
.|+..|-+|...||.=|+.=...|.. |+ ..-.-...+|.+|.....++=+.+..-|+-++++.. +|||. +.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~-is-n~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQ-VE-NKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHH-HH-hhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888866543333322 22 233445667777777766665555555555665555 33332 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 021834 167 KLEMESQAWQRIAQENEAMVFSLNNSLEQLKE 198 (307)
Q Consensus 167 qL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~ 198 (307)
.....-+.-+.++.+|.+.+..|+..+.++..
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334455666676666666666655443
No 117
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.22 E-value=1.3e+02 Score=30.02 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH-----HHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHhhhHH
Q 021834 95 LALQAEKQRQE-----IDHYIISQNER--LRLVLQEQRKQQLEVLLKKIEIKTSALLRQKD-------EEIAKATNRTME 160 (307)
Q Consensus 95 l~~~l~qQ~~E-----ID~~i~~q~Er--LR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe-------~Eier~~rrn~E 160 (307)
+...+.+.+.+ ||.++.+..++ +...+++.| +--.++.+.+++..+.++ ++++.+..+..+
T Consensus 53 v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~-----~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (501)
T 1wle_A 53 AARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLE-----EEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGRE 127 (501)
T ss_dssp HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHH
Confidence 34455555432 78877665332 222222222 223444444544444432 455555556666
Q ss_pred HHHHHHHHHHH
Q 021834 161 LEILLKKLEME 171 (307)
Q Consensus 161 LeErlrqL~~E 171 (307)
|.++++.+..+
T Consensus 128 l~~~i~~l~~~ 138 (501)
T 1wle_A 128 IRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 118
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.13 E-value=60 Score=33.03 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 021834 97 LQAEKQRQEIDHYIISQNERLRLVLQEQR 125 (307)
Q Consensus 97 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~r 125 (307)
.++++-+.+++.|++...|.||..+....
T Consensus 74 EdlsKnsKdseqy~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 74 FEYQKNNKDSHSLTTNIMEILRGDFSSAN 102 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 34566677888888887777766655444
No 119
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=47.98 E-value=7.2 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=22.7
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHhc
Q 021834 257 VMVCKGCNSR---DSCVLFLPCRHLCACRACEAF 287 (307)
Q Consensus 257 ~~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~ 287 (307)
...|.+|.+. ++...-++|+|. +|..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 3689999963 444444999998 79999864
No 120
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.90 E-value=3.2e+02 Score=29.63 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 021834 134 KKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQ 176 (307)
Q Consensus 134 ~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq 176 (307)
..+++...+..+||++--++..+...+|++++..|..|++.-+
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433434444466666666666655544
No 121
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.36 E-value=37 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.7
Q ss_pred HHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 141 SALLRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
..|+|+...++..+..+|..|.+-++....|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888877665544
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.33 E-value=2e+02 Score=27.08 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=27.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
....++--+.|.+-| ..|.--=+.+-++-|+-+..|..+|+.+.++
T Consensus 420 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 420 AATANHTVMALMASL---DAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555433 3333223357788888888888888876544
No 123
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.92 E-value=66 Score=31.12 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=35.8
Q ss_pred HhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 021834 145 RQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLKEK 199 (307)
Q Consensus 145 ReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~~ 199 (307)
.+.++|++....+..+|++.++++..|...-.......|..---|++.|+.+...
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456666666666677777777777666665555555555666677777776543
No 124
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=44.88 E-value=1.1e+02 Score=23.73 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
+-||++|++= |||-.|+..|...+++.+.+... .+....-.-+++.-..|+.+...+..|+-.+..|..+.
T Consensus 16 dRlAsyIdKV-----R~LEqqN~~Le~~i~~l~~~~~~----~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 16 DRFANLIDKV-----RFLEQQNKILLAELEQLKGQGKS----RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777663 46666777777777766655432 23332333344444566677777777777777777776
Q ss_pred HHHHH
Q 021834 173 QAWQR 177 (307)
Q Consensus 173 Q~Wq~ 177 (307)
..++.
T Consensus 87 ~~~k~ 91 (93)
T 3s4r_A 87 MRLRE 91 (93)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 125
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.65 E-value=1.6e+02 Score=25.82 Aligned_cols=87 Identities=11% Similarity=0.211 Sum_probs=68.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021834 110 IISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSL 189 (307)
Q Consensus 110 i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~L 189 (307)
++..+.+|+..+++.|.+.-.+- .-+.+.+-..+.||...+..+..|..+||.|+.-|..--+.++.-.+....+
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~-----~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQY-----AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 44567777777777765543221 1222345567888999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhh
Q 021834 190 NNSLEQLKEKAF 201 (307)
Q Consensus 190 r~~LqQv~~~~~ 201 (307)
...|.++++...
T Consensus 136 e~kln~aiEr~a 147 (189)
T 2v71_A 136 EQRLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 126
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=44.51 E-value=1.1e+02 Score=23.76 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 114 NERLRLVLQEQRKQQLEVLLKKIEI--KTSALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 114 ~ErLR~~L~E~r~Rh~r~ll~avE~--~~~~rLReKe~Eier~~rrn~ELeErlr 166 (307)
.++-+..|+|+||. +|-.++++ ..-.++-.|++||......|.+|.+-+.
T Consensus 26 se~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 26 SSQYWKEVAEKRRK---ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888874 34444443 2345566777888777777777665543
No 127
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=44.41 E-value=40 Score=21.51 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
+.|.|++.+...|-.||..+.||+.|.
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 456677788888888888888887764
No 128
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.15 E-value=33 Score=24.49 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021834 157 RTMELEILLKKLEMESQAWQRIAQENEAMVFSLN 190 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr 190 (307)
+..+||.++..|..|+..+......=+..+..|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998766554333333333
No 129
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.72 E-value=80 Score=22.78 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 021834 157 RTMELEILLKKLEMESQA 174 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q~ 174 (307)
+..+|+.++..|..|+..
T Consensus 31 ~~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666665
No 130
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.71 E-value=45 Score=25.28 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=6.3
Q ss_pred HHHHHHHHHhHHH
Q 021834 183 EAMVFSLNNSLEQ 195 (307)
Q Consensus 183 EA~a~~Lr~~LqQ 195 (307)
|+.+.-|++.|+.
T Consensus 53 d~eI~~LqseLDK 65 (72)
T 3nmd_A 53 DELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555554
No 131
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.50 E-value=32 Score=34.72 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 021834 158 TMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSL 193 (307)
Q Consensus 158 n~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~L 193 (307)
..||++|++++..|...|+.-...-|-+|.-|-..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~ 372 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQL 372 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 346666666666666655555555555554444333
No 132
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.43 E-value=2.9e+02 Score=33.93 Aligned_cols=13 Identities=0% Similarity=0.258 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 021834 98 QAEKQRQEIDHYI 110 (307)
Q Consensus 98 ~l~qQ~~EID~~i 110 (307)
+|++-..|.|.++
T Consensus 1949 ~L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1949 ELDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555666554
No 133
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.30 E-value=1.9e+02 Score=28.24 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHH
Q 021834 98 QAEKQRQEIDHYIISQNERLRLVLQE-------------QRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEIL 164 (307)
Q Consensus 98 ~l~qQ~~EID~~i~~q~ErLR~~L~E-------------~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeEr 164 (307)
.+.+-..+++.|++.-.+.||.-+.. --++|..-|=..|...+. .||....-|+....+..-||..
T Consensus 78 ~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 78 NYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443332 223334444455555555 6666666666666666666655
Q ss_pred H
Q 021834 165 L 165 (307)
Q Consensus 165 l 165 (307)
|
T Consensus 157 I 157 (390)
T 1deq_A 157 I 157 (390)
T ss_pred H
Confidence 5
No 134
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.50 E-value=1.1e+02 Score=23.18 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKKLEMESQAWQR 177 (307)
Q Consensus 150 Eier~~rrn~ELeErlrqL~~E~Q~Wq~ 177 (307)
.++.+...|..|..+|.+|..|...++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777766666665543
No 135
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.50 E-value=32 Score=22.47 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=16.8
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
|+-+.|+.+|..-.+|.+|+.-+.+|
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566677777777777877766555
No 136
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.45 E-value=29 Score=22.65 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=17.7
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
|+.+.|+.+|....++.+|+..+.+|
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35566777777777777777766555
No 137
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.43 E-value=1.8e+02 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=10.6
Q ss_pred HHHHHhHHHHHHHHHhHHHHH
Q 021834 177 RIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 177 ~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
.+..++++.+..|+..+.++.
T Consensus 112 ~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 112 DMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 334445555555555555544
No 138
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.40 E-value=39 Score=31.47 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 138 IKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 138 ~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
.+..++...++.||+.+..++.+|++.+.+|..+...
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555677889999999999999999999777644
No 139
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=40.86 E-value=1.3e+02 Score=23.77 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 114 NERLRLVLQEQRKQQLEVLLKKIEIKTS---ALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 114 ~ErLR~~L~E~r~Rh~r~ll~avE~~~~---~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
+|++-...--+.+....++++.++.-.. ++||+.++-|+.+-| |-++ |++.++..|+
T Consensus 15 ~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk-~l~~-EklAkldLE~ 74 (101)
T 1d7m_A 15 SEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLK-NLEL-EKLARMELEA 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccH-HHHHHHHHHH
Confidence 3444333333334444444444444332 335555555554433 2222 3444455554
No 140
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.63 E-value=28 Score=22.83 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=18.3
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
|+.+.|+.+|.+-.+|.+||.-+.+|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56667777777778888887766555
No 141
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.05 E-value=1.2e+02 Score=29.69 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HhhhHHHHHHHH
Q 021834 99 AEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKA----TNRTMELEILLK 166 (307)
Q Consensus 99 l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~----~rrn~ELeErlr 166 (307)
|+.--++.++=|+...+.|+..|.+..+-|..+..-.. .+...||++-..+... ..-+-+||.++.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~--~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~ 123 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTK--NIVELMRGDFAKANNNDNTFKQINEDLRSRIE 123 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 55555566677888999999999999988754433222 2234444444444333 344445555543
No 142
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.38 E-value=79 Score=24.48 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 154 ATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 154 ~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
...+..+++.++..|..||..-+.....=+..+..|+.-|-+
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999998766655544445555544443
No 143
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.17 E-value=1e+02 Score=22.14 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 021834 139 KTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLE 194 (307)
Q Consensus 139 ~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~Lq 194 (307)
.++.|-|+|.- -+..+|+.+++.|..||.........=+.-+..|+.-|.
T Consensus 12 ~AA~R~R~KKk------~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 12 TAATRYRQKKR------AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566665443 245678888888888888877777666666666666554
No 144
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=38.89 E-value=71 Score=26.80 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=6.4
Q ss_pred HHhhhHHHHHHHHH
Q 021834 154 ATNRTMELEILLKK 167 (307)
Q Consensus 154 ~~rrn~ELeErlrq 167 (307)
++++-.+++.|++.
T Consensus 51 ak~~q~~~e~rI~~ 64 (158)
T 2p4v_A 51 NKKRLREIDRRVRY 64 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445544443
No 145
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=38.76 E-value=31 Score=22.50 Aligned_cols=25 Identities=8% Similarity=0.216 Sum_probs=15.4
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL 168 (307)
+.+.|+.+|.+-.+|.+||..+.+|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4455666666666777776655544
No 146
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=38.53 E-value=17 Score=28.87 Aligned_cols=44 Identities=32% Similarity=0.706 Sum_probs=31.8
Q ss_pred cccccccccccc----cceEEeCCCC--cccchhhHhc-----CCCCCCCCcccc
Q 021834 256 MVMVCKGCNSRD----SCVLFLPCRH--LCACRACEAF-----LDTCPVCLTPKK 299 (307)
Q Consensus 256 ~~~~C~iC~~~~----a~vlLlPCrH--lclC~~C~~~-----l~~CPvCR~~i~ 299 (307)
....|.||.+.- -.-+|+-|.. +.+|+.|..- -..||.|.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 457999999862 2226667764 3479999853 489999998875
No 147
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.00 E-value=36 Score=22.32 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=17.4
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL~ 169 (307)
|+.+.|+.+|....+|.+|+..+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666667777777777776665553
No 148
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.56 E-value=2e+02 Score=24.86 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNE---RLRLVLQEQRK 126 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~E---rLR~~L~E~r~ 126 (307)
.+=..+|++|-.|+...++.+.| |||+.-.|.++
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34457899999999999999866 78888777765
No 149
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.78 E-value=21 Score=33.53 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=32.6
Q ss_pred ccccccccccccccceEEeC----CCC-cccchhhHhc----CCCCCCCCccc
Q 021834 255 KMVMVCKGCNSRDSCVLFLP----CRH-LCACRACEAF----LDTCPVCLTPK 298 (307)
Q Consensus 255 ~~~~~C~iC~~~~a~vlLlP----CrH-lclC~~C~~~----l~~CPvCR~~i 298 (307)
-....|++|+..+...++.. =|+ +..|.-|... --.||.|-...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 34679999999998766652 333 4579999854 26999999873
No 150
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=35.35 E-value=1.8e+02 Score=23.74 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHH
Q 021834 91 FSQSLALQAEKQRQEIDHYIISQNER 116 (307)
Q Consensus 91 ~s~~l~~~l~qQ~~EID~~i~~q~Er 116 (307)
+++-|..+|+|=+.|.|.+++.|.++
T Consensus 33 ~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 33 FNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999999999765
No 151
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.95 E-value=45 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=13.5
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL 168 (307)
+-+.|+-+|..-.+|.+|+..+.+|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444555555555666666555544
No 152
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=34.92 E-value=60 Score=26.98 Aligned_cols=9 Identities=44% Similarity=0.505 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 021834 115 ERLRLVLQE 123 (307)
Q Consensus 115 ErLR~~L~E 123 (307)
++|+..|++
T Consensus 13 ~~L~~el~~ 21 (156)
T 2f23_A 13 ERLMQQLER 21 (156)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 153
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.21 E-value=2.2e+02 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMES----QAWQRIAQ 180 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~----Q~Wq~~Ak 180 (307)
.--.|+...+-....||+++++|..|| +-|..+..
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888899999999999999999 45665443
No 154
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.88 E-value=74 Score=24.13 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=23.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021834 155 TNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLN 190 (307)
Q Consensus 155 ~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr 190 (307)
..+..+++.++..|..||..-+.....=+..+..|+
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668888999999999886655444333333333
No 155
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.53 E-value=1.9e+02 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021834 104 QEIDHYIISQNERLRLVLQEQRKQQL 129 (307)
Q Consensus 104 ~EID~~i~~q~ErLR~~L~E~r~Rh~ 129 (307)
..||+ |+...++||..|+.-...+.
T Consensus 15 ~~Ie~-Lkreie~lk~ele~l~~E~q 39 (120)
T 3i00_A 15 HLIER-LYREISGLKAQLENMKTESQ 39 (120)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 35555 45566667777666644443
No 156
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.22 E-value=3.6e+02 Score=26.74 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 93 QSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQ--QLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 93 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~R--h~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
=.|+..|-+++..||- ..+.|...|.+.-.. -...++.+|......+=+++.+=++.+.....+||+..+.+
T Consensus 85 C~l~D~L~k~q~~V~~----~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 85 CELQTTLLKQEKTVKP----VLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp THHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhhHh----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 3566677777666655 344444444444222 12224444444444333333444444555556666555444
No 157
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.10 E-value=77 Score=22.27 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=18.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 149 EEIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 149 ~Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
.|++.+.+.|.+|..++..|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776666655
No 158
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.32 E-value=2.4e+02 Score=30.66 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 144 LRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 144 LReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
+.+++++++++..+..+|+++++.+..+
T Consensus 908 l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 908 YAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455544444555544444443
No 159
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=31.10 E-value=92 Score=26.00 Aligned_cols=12 Identities=17% Similarity=-0.103 Sum_probs=4.7
Q ss_pred HhhhHHHHHHHH
Q 021834 155 TNRTMELEILLK 166 (307)
Q Consensus 155 ~rrn~ELeErlr 166 (307)
+++-..++.|++
T Consensus 52 k~~q~~~e~ri~ 63 (158)
T 1grj_A 52 REQQGFCEGRIK 63 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 160
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.86 E-value=49 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=15.2
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
|+-+.|+.+|.+-.+|.+|+..+.+|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34455666666666666666555444
No 161
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.82 E-value=53 Score=21.53 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=16.9
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
||.+.|..+|....++.+|+..+.+|
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45566666666777777777655554
No 162
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.71 E-value=2.4e+02 Score=28.06 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHH
Q 021834 106 IDHYIISQNE--RLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEM 170 (307)
Q Consensus 106 ID~~i~~q~E--rLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~ 170 (307)
+|.++.+..+ .+...+++.|.+ ..++-..+++..+.++ +++.+..+..+|.++++.|..
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~-----rn~~sk~i~~~k~~~~-~~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKK-----LNSVQKEIGKRFKAKE-DAKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 6777766433 222333333332 2344444444434332 344444444455555544433
No 163
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=30.48 E-value=2.2e+02 Score=23.24 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=4.3
Q ss_pred hHHHHHHHHh
Q 021834 147 KDEEIAKATN 156 (307)
Q Consensus 147 Ke~Eier~~r 156 (307)
-|.|+|.+.+
T Consensus 66 ~e~E~ae~k~ 75 (115)
T 3vem_A 66 LERKMAEVQA 75 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 164
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.42 E-value=1.3e+02 Score=24.51 Aligned_cols=54 Identities=28% Similarity=0.331 Sum_probs=32.1
Q ss_pred HhhHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 021834 145 RQKDEEIAKATNRTMELEILLKKLE----MESQAWQRIAQENEAMVFSLNNSLEQLKE 198 (307)
Q Consensus 145 ReKe~Eier~~rrn~ELeErlrqL~----~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~~ 198 (307)
|+..+++++......+||+.+..-. .+.+.-+..++..|+.-..|+...-|...
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555577777777777777644333 23445555666666666666666555443
No 165
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.40 E-value=52 Score=21.57 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=16.5
Q ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHH
Q 021834 143 LLRQKDEEIAKATNRTMELEILLKKL 168 (307)
Q Consensus 143 rLReKe~Eier~~rrn~ELeErlrqL 168 (307)
|+.+.|+.+|.+-.+|.+|+..+.+|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 45566666777777777777655554
No 166
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.12 E-value=2.3e+02 Score=27.54 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH-H----HHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHH
Q 021834 92 SQSLALQAEKQRQ-E----IDHYIISQNER--LRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEIL 164 (307)
Q Consensus 92 s~~l~~~l~qQ~~-E----ID~~i~~q~Er--LR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeEr 164 (307)
++.+..-+.+... + +|.++.+-.++ +...+++.|.++ +++.+.+++..+.+ ++.+.+..+..+|.++
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~-----n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~ 84 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHER-----NKIAVEIGKRRKKG-EPVDELLAKSREIVKR 84 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTSC-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhccc-ccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021834 165 LKKLEMESQAWQRIAQE 181 (307)
Q Consensus 165 lrqL~~E~Q~Wq~~Ak~ 181 (307)
++.+..+...-......
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 85 IGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 167
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=30.02 E-value=1.1e+02 Score=25.73 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=29.5
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHhHH--HHHHHHHhHHHHHHHh
Q 021834 140 TSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRI---AQENEA--MVFSLNNSLEQLKEKA 200 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~---Ak~nEA--~a~~Lr~~LqQv~~~~ 200 (307)
|.+++.+.+.+|.+...-.-+- ..+..|-.-|..+ .-+.|. --..|++.|-+++...
T Consensus 71 v~~~F~~Ld~~L~~l~~~s~e~----~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI 132 (140)
T 1xaw_A 71 INKELSRLDKELDDYREESEEY----MAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMV 132 (140)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHH----HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777654322221 1233333333221 112333 3348999999887654
No 168
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=29.52 E-value=52 Score=31.06 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=18.0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhHHHHHHHHH
Q 021834 138 IKTSALLRQKDEEIAKATNRTMELEILLKK 167 (307)
Q Consensus 138 ~~~~~rLReKe~Eier~~rrn~ELeErlrq 167 (307)
..+.+.||....+++.+..|...||..|.+
T Consensus 24 ~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 24 STVAGSLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp TTTHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666677766666666666544
No 169
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.49 E-value=1.1e+02 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021834 163 ILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 163 ErlrqL~~E~Q~Wq~~Ak 180 (307)
+-+..|..||..-..+|.
T Consensus 48 eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 48 SEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 170
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.48 E-value=1e+02 Score=22.24 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=21.8
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELEILLKKLEME 171 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELeErlrqL~~E 171 (307)
.++.+.+.+++.+...|.+|...+.+|..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777888888888888877776554
No 171
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.02 E-value=23 Score=30.26 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=13.3
Q ss_pred CCCCCCCCccccceEEE
Q 021834 288 LDTCPVCLTPKKASIEA 304 (307)
Q Consensus 288 l~~CPvCR~~i~~sV~V 304 (307)
-..||+|..++.....+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 35999999998876654
No 172
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.64 E-value=1.3e+02 Score=25.96 Aligned_cols=9 Identities=44% Similarity=0.523 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 021834 117 LRLVLQEQR 125 (307)
Q Consensus 117 LR~~L~E~r 125 (307)
||..|..+|
T Consensus 90 Lr~ql~akr 98 (175)
T 3lay_A 90 LRQQLISKR 98 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344443333
No 173
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.11 E-value=19 Score=31.47 Aligned_cols=15 Identities=33% Similarity=1.039 Sum_probs=12.6
Q ss_pred CCCCCCCccccceEE
Q 021834 289 DTCPVCLTPKKASIE 303 (307)
Q Consensus 289 ~~CPvCR~~i~~sV~ 303 (307)
..||+|..++..+..
T Consensus 187 ~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 187 EKCPICFRPKDTFTA 201 (202)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCChHHhee
Confidence 799999999887654
No 174
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.26 E-value=29 Score=24.33 Aligned_cols=14 Identities=36% Similarity=0.819 Sum_probs=7.1
Q ss_pred CCCCCCccccceEE
Q 021834 290 TCPVCLTPKKASIE 303 (307)
Q Consensus 290 ~CPvCR~~i~~sV~ 303 (307)
.||+|..++..+..
T Consensus 37 ~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 37 VCPLCGAPKSEFER 50 (52)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCCCCCCCHHHcEE
Confidence 45555555554443
No 175
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.08 E-value=5.2e+02 Score=26.35 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 021834 95 LALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQ--LEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMES 172 (307)
Q Consensus 95 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh--~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~ 172 (307)
|-.-|.+|..+|... .++||..|++..+-+ +-+.+..+-....+++..-...-...+.-..||+.++.-|..+.
T Consensus 51 LQglLdkqErDltkr----INELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNR----INKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHH----HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 444455555555443 345565555552211 11222222222223333333222222333346777666666655
Q ss_pred HH
Q 021834 173 QA 174 (307)
Q Consensus 173 Q~ 174 (307)
+.
T Consensus 127 dn 128 (562)
T 3ghg_A 127 IE 128 (562)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 176
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.97 E-value=1.8e+02 Score=21.05 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=9.6
Q ss_pred HhhHHHHHHHHhhh
Q 021834 145 RQKDEEIAKATNRT 158 (307)
Q Consensus 145 ReKe~Eier~~rrn 158 (307)
-+||.||+|+++..
T Consensus 35 ~e~eQEieRL~~LL 48 (58)
T 3a2a_A 35 SEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36777887777643
No 177
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.85 E-value=29 Score=24.66 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=8.5
Q ss_pred CCCCCCccccceEE
Q 021834 290 TCPVCLTPKKASIE 303 (307)
Q Consensus 290 ~CPvCR~~i~~sV~ 303 (307)
.||+|..++..+..
T Consensus 38 ~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 38 VCPDCGVGKIDFEM 51 (55)
T ss_dssp CCTTTCCCGGGEEE
T ss_pred cCCCCCCCHHHcee
Confidence 56666666665554
No 178
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.65 E-value=26 Score=24.56 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=6.5
Q ss_pred CCCCCCccccceE
Q 021834 290 TCPVCLTPKKASI 302 (307)
Q Consensus 290 ~CPvCR~~i~~sV 302 (307)
.||+|..++..+.
T Consensus 38 ~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 38 ACPVCGASKDAFE 50 (52)
T ss_dssp CCSSSCCCTTSCE
T ss_pred cCCCCCCcHHHcE
Confidence 4555555554443
No 179
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.20 E-value=27 Score=24.88 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.5
Q ss_pred cccccccccccc
Q 021834 255 KMVMVCKGCNSR 266 (307)
Q Consensus 255 ~~~~~C~iC~~~ 266 (307)
+....|.+|...
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 334455555443
No 180
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.70 E-value=90 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 021834 136 IEIKTSALLRQKDEEIAKAT 155 (307)
Q Consensus 136 vE~~~~~rLReKe~Eier~~ 155 (307)
+++.....|+.||+-|..+.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE 31 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELE 31 (67)
T ss_dssp -----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHH
Confidence 33444455555555544433
No 181
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.56 E-value=66 Score=22.72 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHhhhHHHHH
Q 021834 141 SALLRQKDEEIAKATNRTMELEI 163 (307)
Q Consensus 141 ~~rLReKe~Eier~~rrn~ELeE 163 (307)
-+++++.|.++-++++++..||+
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 36677777777778877777775
No 182
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.36 E-value=60 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=11.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 021834 149 EEIAKATNRTMELEILLKKLE 169 (307)
Q Consensus 149 ~Eier~~rrn~ELeErlrqL~ 169 (307)
.+++.+.+.|.+|.++++.+.
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666665543
No 183
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.20 E-value=2.3e+02 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
+|..-|..+.+..-|.+|-|+|+..|.+.-
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555666666667788888888888776
No 184
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.16 E-value=2.2e+02 Score=28.32 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh-hHHHHHHHH
Q 021834 94 SLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNR-TMELEILLK 166 (307)
Q Consensus 94 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rr-n~ELeErlr 166 (307)
+|+..|-+|...||.=|+.=...| ..|+. .-.-...+|.+|.....++=+.+..- +.+.++ ..+|||..+
T Consensus 81 glad~L~kye~~V~~dl~~Le~~l-~~isn-~Ts~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~~~~ 151 (461)
T 3ghg_B 81 QLQEALLQQERPIRNSVDELNNNV-EAVSQ-TSSSSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEKHQL 151 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHT
T ss_pred hHHHHHHhcccchhhHHHHHHHHH-HHHHh-hhHHHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHHHHH
Confidence 689999999999998765432222 22222 33445567777777776666665554 555444 456666553
No 185
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=25.06 E-value=2.1e+02 Score=25.77 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=41.8
Q ss_pred HHhhhhcc-CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 021834 78 HQQQRNQN-FDSMPFSQSLALQAEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATN 156 (307)
Q Consensus 78 ~~~~~~q~-~~s~~~s~~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~r 156 (307)
|-|+-+|+ ++++++. ..|+.=+.+||.-=.. -|++++..++-- +.++.++.++-+.-.. -..+..-++.+.+
T Consensus 6 ~~~~~~~~~~~~~~i~----~iF~~~~~~Ld~~~d~-REriik~sRdIt-~~sk~~I~~Lhr~~~~-~~~~~~~~~eA~~ 78 (249)
T 3axj_A 6 HHHHHSQDPMSNFVNL----DIFSNYQKYIDNEQEV-RENIRIVVREIE-HLSKEAQIKLQIIHSD-LSQISAACGLARK 78 (249)
T ss_dssp -----CCCTHHHHSCH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHGGGGTC-GGGHHHHHHHHHH
T ss_pred ccccccCCccccchHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHhccccc-cccchHHHHHHHH
Confidence 34455666 5554433 3345555555553222 255555555443 2444444444332100 0124455666666
Q ss_pred hhHHHHHHHHHHHHHHH
Q 021834 157 RTMELEILLKKLEMESQ 173 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q 173 (307)
+..+..+.+++|..+.+
T Consensus 79 ~l~~i~~~~~~L~~~l~ 95 (249)
T 3axj_A 79 QVELCAQKYQKLAELVP 95 (249)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 66677777777777643
No 186
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.79 E-value=36 Score=26.20 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.2
Q ss_pred CCCCCCccccceEEE
Q 021834 290 TCPVCLTPKKASIEA 304 (307)
Q Consensus 290 ~CPvCR~~i~~sV~V 304 (307)
.||+|..++..+..+
T Consensus 62 ~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCTTTCCCGGGEEEE
T ss_pred cCCCCCCCHHHcEEc
Confidence 799999999988775
No 187
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.52 E-value=2.5e+02 Score=21.74 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHH
Q 021834 133 LKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLE-MESQAWQRIA 179 (307)
Q Consensus 133 l~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~-~E~Q~Wq~~A 179 (307)
|..-|......|.+.+.|=+.+......|++-.++|. -|.+-|+..-
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn 63 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555666777888888888888888888888888884 4778887743
No 188
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.26 E-value=4.5e+02 Score=24.73 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 021834 99 AEKQRQEIDH 108 (307)
Q Consensus 99 l~qQ~~EID~ 108 (307)
+++.+.|+++
T Consensus 365 l~~~~~~le~ 374 (487)
T 3oja_A 365 LEQKKKALDE 374 (487)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 189
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.13 E-value=2.2e+02 Score=21.08 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=33.6
Q ss_pred HHHHHHHHhhHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 138 IKTSALLRQKDEEIAKATNRTMELEI-------LLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 138 ~~~~~rLReKe~Eier~~rrn~ELeE-------rlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
.++.++++....|.+.+.-+...||. +||.++.-.|. +|.....|...+..+|
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~-------~e~e~~~l~~~I~~IL 64 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE-------NEGENDPVLQRIVDIL 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHH
Confidence 34557777778888888877777887 77777665553 3333344455454444
No 190
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=24.11 E-value=21 Score=30.76 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=12.2
Q ss_pred CCCCCCCccccceEE
Q 021834 289 DTCPVCLTPKKASIE 303 (307)
Q Consensus 289 ~~CPvCR~~i~~sV~ 303 (307)
..||+|..++..+..
T Consensus 172 ~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 172 ELCPACAHPKAHFEL 186 (191)
T ss_dssp SBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCHHHHHh
Confidence 499999999877654
No 191
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.66 E-value=2.4e+02 Score=21.43 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=17.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 021834 150 EIAKATNRTMELEILLKKLEMESQA 174 (307)
Q Consensus 150 Eier~~rrn~ELeErlrqL~~E~Q~ 174 (307)
-++.+..+|.+||++|+.+...-..
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3445566788999999888765554
No 192
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.64 E-value=2.6e+02 Score=21.65 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=10.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 153 KATNRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 153 r~~rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
++.+....+++.+..|..|+..-+.+|.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444333333
No 193
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.50 E-value=94 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=16.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 021834 151 IAKATNRTMELEILLKKLEMESQAWQ 176 (307)
Q Consensus 151 ier~~rrn~ELeErlrqL~~E~Q~Wq 176 (307)
+++...++..|.+++.+|+.|-..|+
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455666777777777777775
No 194
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=23.37 E-value=4.3e+02 Score=24.15 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHH-----------HhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 021834 95 LALQAEKQRQEIDHYII-----------SQNERLR---------LVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKA 154 (307)
Q Consensus 95 l~~~l~qQ~~EID~~i~-----------~q~ErLR---------~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~ 154 (307)
+.-.+.+|..|+|-+-+ .|+..+- ..+.+...+|...|+..+++ .-++|.+.-
T Consensus 30 f~Kl~KKQqKEl~~LkKKH~Ke~~~lqK~~~~~~~~~s~~~~~~~kv~el~~~q~~el~~l~~~-------q~~eE~~~k 102 (251)
T 1jad_A 30 FLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEE-------YHDGIRRRK 102 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 33345566666666655 3333331 23346666666666665554 356777777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhHHH
Q 021834 155 TNRTMELEILLKKLEMESQAWQRIAQ--ENEAMVFSLNNSLEQ 195 (307)
Q Consensus 155 ~rrn~ELeErlrqL~~E~Q~Wq~~Ak--~nEA~a~~Lr~~LqQ 195 (307)
.....++.++|+.|..|+|+=|-.+. .+|.-...|+.+++.
T Consensus 103 ~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~k 145 (251)
T 1jad_A 103 EQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEA 145 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999998877766 566666677777654
No 195
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=23.31 E-value=2.3e+02 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=12.7
Q ss_pred cccccccccc----ccceEEeCCCC
Q 021834 257 VMVCKGCNSR----DSCVLFLPCRH 277 (307)
Q Consensus 257 ~~~C~iC~~~----~a~vlLlPCrH 277 (307)
..-|.+=.+. ...|.+.||..
T Consensus 115 ~~Hc~i~~~~~~~~~~~vtl~p~~~ 139 (184)
T 4egx_A 115 EEHCVFRSDSRGGSEAVVTLEPCEG 139 (184)
T ss_dssp SEEEEEEEECCSSCSCEEEEEECTT
T ss_pred cccEEEEEcCCCCceEEEEEeeCCC
Confidence 3467775543 23577888854
No 196
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.09 E-value=34 Score=23.56 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=8.9
Q ss_pred CCCCCCccccceE
Q 021834 290 TCPVCLTPKKASI 302 (307)
Q Consensus 290 ~CPvCR~~i~~sV 302 (307)
.||+|..++....
T Consensus 32 ~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 32 CCPVCGVSKDQFS 44 (46)
T ss_dssp BCTTTCCBGGGEE
T ss_pred cCcCCCCcHHHcE
Confidence 6777777766554
No 197
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.70 E-value=2e+02 Score=20.09 Aligned_cols=34 Identities=29% Similarity=0.199 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 021834 157 RTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQLK 197 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQv~ 197 (307)
...+|+.++..|..|+..-+. .+..|+..+.++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~-------~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQS-------EVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 456888888888888877443 3455666555544
No 198
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.32 E-value=2.1e+02 Score=20.23 Aligned_cols=34 Identities=24% Similarity=0.013 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021834 157 RTMELEILLKKLEMESQAWQRIAQENEAMVFSLN 190 (307)
Q Consensus 157 rn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr 190 (307)
...+|+.++..|..|+...+.-...=...+..|+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987766544333333333
No 199
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.29 E-value=34 Score=25.43 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=10.5
Q ss_pred CCCCCCccccceEEE
Q 021834 290 TCPVCLTPKKASIEA 304 (307)
Q Consensus 290 ~CPvCR~~i~~sV~V 304 (307)
.||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 678887777766554
No 200
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.02 E-value=3.7e+02 Score=24.03 Aligned_cols=49 Identities=33% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 021834 109 YIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLK 166 (307)
Q Consensus 109 ~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlr 166 (307)
|-+.=+|+=|.+|.+.-. .+..|- .++-.|++||..+...|.+|.+-+.
T Consensus 98 YWk~lAE~RR~AL~eaLe-EN~~Lh--------~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 98 YWKEVAEKRRKALYEALK-ENEKLH--------KEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666655543 222333 3345699999999998888876554
No 201
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=22.01 E-value=1.1e+02 Score=24.36 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 140 TSALLRQKDEEIAKATNRT-MELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn-~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
++++|-=++.+|+++...+ ..+.|++.++= ..|+..- -.+|++..|-..|..
T Consensus 41 LAR~LGlse~dId~I~~~~p~dl~eq~~qmL---~~W~~r~-G~~AT~~~L~~AL~~ 93 (115)
T 2o71_A 41 MVLSLGLSQTDIYRCKANHPHNVQSQVVEAF---IRWRQRF-GKQATFQSLHNGLRA 93 (115)
T ss_dssp HHHHTTCCHHHHHHHHHHCTTCHHHHHHHHH---HHHHHHH-GGGCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHH-CcCcHHHHHHHHHHH
Confidence 3577888999999998777 56888887776 6799885 346777776665554
No 202
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.91 E-value=35 Score=24.79 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=9.7
Q ss_pred cccccccccccccc
Q 021834 255 KMVMVCKGCNSRDS 268 (307)
Q Consensus 255 ~~~~~C~iC~~~~a 268 (307)
.....|.+|.+...
T Consensus 10 ~~~~~C~vC~~~~~ 23 (66)
T 2lri_C 10 APGARCGVCGDGTD 23 (66)
T ss_dssp CTTCCCTTTSCCTT
T ss_pred CCCCCcCCCCCCCe
Confidence 34567999987543
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.65 E-value=35 Score=32.91 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 021834 156 NRTMELEILLKKLEMESQAWQRIAQ 180 (307)
Q Consensus 156 rrn~ELeErlrqL~~E~Q~Wq~~Ak 180 (307)
.+..+|||..++|+.|-.+|...-.
T Consensus 373 ~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (418)
T 2qag_C 373 AQHKELEEKRRQFEDEKANWEAQQR 397 (418)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445888999999999998876654
No 204
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.62 E-value=2.8e+02 Score=21.41 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHHHhhhHHHH
Q 021834 142 ALLRQKDEEIAKATNRTMELE 162 (307)
Q Consensus 142 ~rLReKe~Eier~~rrn~ELe 162 (307)
+.|..-+.+|++..++..+|+
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666664
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.36 E-value=20 Score=35.03 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 021834 99 AEKQRQEIDHYIISQNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRI 178 (307)
Q Consensus 99 l~qQ~~EID~~i~~q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~ 178 (307)
.+..+.+++.-++-..+.||..+.++.+..- .-|.-.|.....+..+... .+.....+||++.++|+.|-..|...
T Consensus 324 ~~~~~~~~~~~~~~~e~~~~~~f~~~v~~~e-~~l~~~e~~l~~~~~~~~~---~~~~~~~~le~~~~~~~~~~~~~~~~ 399 (427)
T 2qag_B 324 YEAKRNEFLGELQKKEEEMRQMFVQRVKEKE-AELKEAEKELHEKFDRLKK---LHQDEKKKLEDKKKSLDDEVNAFKQR 399 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554433222 1223333322222222222 22345568999999999999999876
Q ss_pred HH
Q 021834 179 AQ 180 (307)
Q Consensus 179 Ak 180 (307)
-.
T Consensus 400 ~~ 401 (427)
T 2qag_B 400 KT 401 (427)
T ss_dssp --
T ss_pred HH
Confidence 44
No 206
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.27 E-value=3.5e+02 Score=22.31 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 021834 114 NERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQK-DEEIAKATNRTMELEILLKKLEMESQAWQRIAQENEAMVFSLNNS 192 (307)
Q Consensus 114 ~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReK-e~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~ 192 (307)
..+++..+.+..+-|.+.+. +......+.+|++ +.-+..+++....+..+|+.|...+. ..+.......+|...
T Consensus 18 i~~i~~~v~~L~~l~~~~l~-~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~----~~r~~k~~~~~L~~~ 92 (196)
T 1fio_A 18 LDKYDHTINQVDSLHKRLLT-EVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI----HDTNKQAQAENSRQR 92 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----hhhHHHHHHHHHHHH
Confidence 34455555555555554332 1111111122222 22233445555566666766665432 122333455666666
Q ss_pred HHHHH
Q 021834 193 LEQLK 197 (307)
Q Consensus 193 LqQv~ 197 (307)
|..++
T Consensus 93 f~~~~ 97 (196)
T 1fio_A 93 FLKLI 97 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 207
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.22 E-value=80 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=7.1
Q ss_pred HHHHHHHhhhHHHHHHH
Q 021834 149 EEIAKATNRTMELEILL 165 (307)
Q Consensus 149 ~Eier~~rrn~ELeErl 165 (307)
.|++.+.+++.+|+.+|
T Consensus 61 ~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 208
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.72 E-value=4.2e+02 Score=26.86 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHhHHH
Q 021834 131 VLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKKLEMESQAWQRIAQE-----NEAMVFSLNNSLEQ 195 (307)
Q Consensus 131 ~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrqL~~E~Q~Wq~~Ak~-----nEA~a~~Lr~~LqQ 195 (307)
.++..+...+...+...+.+++...++...+++.+.++....+.|+..... -..+...|+..+.+
T Consensus 341 ~~~~~l~~~i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~~l~~~i~~ 410 (695)
T 2j69_A 341 LACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLN 410 (695)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555556666777777777777777777777777765542 12333445544444
No 209
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.53 E-value=3e+02 Score=21.27 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 021834 146 QKDEEIAKATNRTMELEILLKKLEMESQAW 175 (307)
Q Consensus 146 eKe~Eier~~rrn~ELeErlrqL~~E~Q~W 175 (307)
+|..-|..+.+..-|.+|-|+|+..|.+.-
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445556666677778888888888887763
No 210
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=20.32 E-value=4.5e+02 Score=23.28 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHhhhHHHH
Q 021834 118 RLVLQEQRKQQLEVLLKKIEI-KTSALLRQKDEEIAKATNRTMELE 162 (307)
Q Consensus 118 R~~L~E~r~Rh~r~ll~avE~-~~~~rLReKe~Eier~~rrn~ELe 162 (307)
...|.+.|..|..++=.+||. +..+-+-+.-..|-.+.|.|..|+
T Consensus 90 ~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~ 135 (214)
T 2cly_A 90 IAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMA 135 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555544 122223334444444445444443
No 211
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.13 E-value=99 Score=24.64 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 021834 140 TSALLRQKDEEIAKATNRT-MELEILLKKLEMESQAWQRIAQENEAMVFSLNNSLEQ 195 (307)
Q Consensus 140 ~~~rLReKe~Eier~~rrn-~ELeErlrqL~~E~Q~Wq~~Ak~nEA~a~~Lr~~LqQ 195 (307)
++++|-=++.+|+++...+ ..+.|++.++= ..|+..- -.+|++..|-..|..
T Consensus 41 LAR~LGlse~dId~I~~~~p~~l~eq~~qmL---~~W~~r~-G~~AT~~~L~~AL~~ 93 (114)
T 2of5_A 41 MVLSLGLSQTDIYRCKANHPHNVQSQVVEAF---IRWRQRF-GKQATFQSLHNGLRA 93 (114)
T ss_dssp HHHTTTCCHHHHHHHHHHCSSCHHHHHHHHH---HHHHHHH-GGGCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHH-CcCcHHHHHHHHHHH
Confidence 3577888999999998777 56888887776 6799885 346777776665554
No 212
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.08 E-value=4.5e+02 Score=25.16 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH--HHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHH
Q 021834 92 SQSLALQAEKQRQE--IDHYIIS--QNERLRLVLQEQRKQQLEVLLKKIEIKTSALLRQKDEEIAKATNRTMELEILLKK 167 (307)
Q Consensus 92 s~~l~~~l~qQ~~E--ID~~i~~--q~ErLR~~L~E~r~Rh~r~ll~avE~~~~~rLReKe~Eier~~rrn~ELeErlrq 167 (307)
++.+..-+.+...+ +|.++.+ +--.+...+++.|.+. .++.+.+++ .+.++.+.+..+..+|.++++.
T Consensus 11 ~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~-----n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~ 82 (421)
T 1ses_A 11 PEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTER-----NQVAKRVPK---APPEEKEALIARGKALGEEAKR 82 (421)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh---hccccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 021834 168 LEMESQAWQRIAQE 181 (307)
Q Consensus 168 L~~E~Q~Wq~~Ak~ 181 (307)
+..+...-......
T Consensus 83 ~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 83 LEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Done!