Query 021835
Match_columns 307
No_of_seqs 95 out of 97
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 10:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hct_A TNF receptor-associated 98.8 1.7E-09 5.9E-14 84.9 3.8 98 28-163 17-116 (118)
2 1rmd_A RAG1; V(D)J recombinati 98.5 9E-08 3.1E-12 74.3 4.3 87 28-152 22-111 (116)
3 3knv_A TNF receptor-associated 97.9 5.9E-06 2E-10 67.9 3.3 89 26-152 28-128 (141)
4 3hcs_A TNF receptor-associated 97.9 8.5E-06 2.9E-10 67.0 3.7 86 28-151 17-104 (170)
5 2ysl_A Tripartite motif-contai 97.2 0.00055 1.9E-08 48.3 5.2 51 27-113 18-68 (73)
6 2ecm_A Ring finger and CHY zin 97.1 0.00044 1.5E-08 46.3 4.0 49 27-114 3-55 (55)
7 2ecw_A Tripartite motif-contai 97.1 0.0009 3.1E-08 47.7 5.9 53 28-113 18-70 (85)
8 4ayc_A E3 ubiquitin-protein li 97.1 0.00045 1.6E-08 55.4 4.7 52 28-118 52-103 (138)
9 1v87_A Deltex protein 2; ring- 97.1 0.00026 8.9E-09 54.3 3.2 66 26-113 22-93 (114)
10 2yur_A Retinoblastoma-binding 97.0 0.00048 1.6E-08 49.7 3.8 37 27-75 13-49 (74)
11 3fl2_A E3 ubiquitin-protein li 97.0 0.00032 1.1E-08 54.9 3.0 49 28-114 51-99 (124)
12 2d8t_A Dactylidin, ring finger 97.0 0.00066 2.3E-08 48.4 4.4 23 25-47 11-33 (71)
13 3lrq_A E3 ubiquitin-protein li 97.0 0.0003 1E-08 53.8 2.8 49 27-113 20-69 (100)
14 4ic3_A E3 ubiquitin-protein li 97.0 0.00035 1.2E-08 51.0 2.8 22 26-47 21-42 (74)
15 2djb_A Polycomb group ring fin 97.0 0.00058 2E-08 48.8 3.8 50 27-114 13-62 (72)
16 2egp_A Tripartite motif-contai 96.9 0.00038 1.3E-08 49.7 2.0 55 28-114 11-65 (79)
17 2ecv_A Tripartite motif-contai 96.9 0.0007 2.4E-08 48.3 3.3 54 28-114 18-71 (85)
18 1jm7_A BRCA1, breast cancer ty 96.8 0.0007 2.4E-08 51.3 3.4 51 28-114 20-70 (112)
19 2csy_A Zinc finger protein 183 96.8 0.00075 2.6E-08 49.1 3.1 50 26-114 12-61 (81)
20 2ecy_A TNF receptor-associated 96.7 0.0006 2.1E-08 47.8 2.2 48 28-113 14-61 (66)
21 2ckl_A Polycomb group ring fin 96.7 0.0036 1.2E-07 47.8 6.5 48 28-114 14-62 (108)
22 2ckl_B Ubiquitin ligase protei 96.7 0.00074 2.5E-08 55.3 2.6 49 28-113 53-101 (165)
23 3ztg_A E3 ubiquitin-protein li 96.7 0.001 3.5E-08 49.2 3.0 50 27-112 11-60 (92)
24 2ct2_A Tripartite motif protei 96.6 0.0023 7.9E-08 46.3 4.5 52 27-114 13-68 (88)
25 2yho_A E3 ubiquitin-protein li 96.6 0.0011 3.8E-08 49.5 2.8 21 28-48 17-37 (79)
26 2ecg_A Baculoviral IAP repeat- 96.5 0.00076 2.6E-08 49.0 1.6 20 28-47 24-43 (75)
27 3l11_A E3 ubiquitin-protein li 96.5 0.00054 1.8E-08 52.9 0.5 20 28-47 14-33 (115)
28 2vje_A E3 ubiquitin-protein li 96.5 0.0024 8.2E-08 45.7 3.8 52 28-118 7-61 (64)
29 2xeu_A Ring finger protein 4; 96.3 0.0014 4.8E-08 44.7 1.8 48 28-114 2-56 (64)
30 1bor_A Transcription factor PM 96.3 0.0015 5.2E-08 45.2 1.9 23 26-48 3-25 (56)
31 2ea5_A Cell growth regulator w 96.3 0.0023 7.8E-08 46.6 2.9 21 28-48 14-34 (68)
32 3t6p_A Baculoviral IAP repeat- 96.3 0.0016 5.6E-08 61.0 2.6 21 27-47 293-313 (345)
33 2d8s_A Cellular modulator of i 96.3 0.0042 1.4E-07 47.0 4.3 57 26-114 12-70 (80)
34 2kiz_A E3 ubiquitin-protein li 96.2 0.003 1E-07 44.3 3.2 49 27-114 12-63 (69)
35 1iym_A EL5; ring-H2 finger, ub 96.2 0.0026 8.8E-08 42.7 2.7 34 28-73 4-40 (55)
36 1chc_A Equine herpes virus-1 r 96.2 0.0042 1.4E-07 43.3 3.8 50 28-116 4-54 (68)
37 2ecn_A Ring finger protein 141 96.2 0.0025 8.4E-08 44.9 2.5 48 27-114 13-60 (70)
38 1x4j_A Ring finger protein 38; 96.2 0.0021 7E-08 46.1 2.1 37 26-75 20-59 (75)
39 2y43_A E3 ubiquitin-protein li 96.1 0.0035 1.2E-07 47.1 3.2 49 28-114 21-69 (99)
40 2vje_B MDM4 protein; proto-onc 96.0 0.0058 2E-07 43.5 3.6 53 29-118 7-60 (63)
41 2ea6_A Ring finger protein 4; 95.9 0.0018 6.3E-08 44.7 0.8 48 27-113 13-67 (69)
42 2ecj_A Tripartite motif-contai 95.9 0.0046 1.6E-07 41.6 2.6 35 27-74 13-47 (58)
43 1t1h_A Gspef-atpub14, armadill 95.9 0.0087 3E-07 42.8 4.2 49 28-114 7-55 (78)
44 1jm7_B BARD1, BRCA1-associated 95.8 0.0036 1.2E-07 48.7 2.3 21 27-47 20-41 (117)
45 1z6u_A NP95-like ring finger p 95.8 0.0042 1.4E-07 51.2 2.8 50 28-115 77-126 (150)
46 3ng2_A RNF4, snurf, ring finge 95.8 0.0023 7.9E-08 44.7 1.0 50 26-114 7-63 (71)
47 1e4u_A Transcriptional repress 95.6 0.011 3.8E-07 44.3 4.0 12 103-114 51-62 (78)
48 2y1n_A E3 ubiquitin-protein li 95.5 0.01 3.6E-07 57.1 4.4 51 30-118 333-383 (389)
49 1g25_A CDK-activating kinase a 95.3 0.0052 1.8E-07 42.8 1.4 49 28-114 2-55 (65)
50 2ep4_A Ring finger protein 24; 95.2 0.011 3.7E-07 41.9 2.7 48 28-114 14-64 (74)
51 2l0b_A E3 ubiquitin-protein li 95.1 0.013 4.4E-07 44.0 3.0 48 27-113 38-88 (91)
52 2ect_A Ring finger protein 126 94.7 0.018 6.3E-07 41.1 2.7 49 28-115 14-65 (78)
53 2ecl_A Ring-box protein 2; RNF 94.4 0.024 8.3E-07 41.8 3.0 14 28-41 14-27 (81)
54 2ysj_A Tripartite motif-contai 93.8 0.034 1.2E-06 38.3 2.6 36 27-75 18-53 (63)
55 4ap4_A E3 ubiquitin ligase RNF 93.8 0.021 7.2E-07 43.5 1.5 47 28-113 71-124 (133)
56 4ap4_A E3 ubiquitin ligase RNF 93.4 0.03 1E-06 42.7 1.9 36 27-75 5-47 (133)
57 1wgm_A Ubiquitin conjugation f 92.2 0.034 1.2E-06 43.1 0.7 22 27-48 20-41 (98)
58 3dpl_R Ring-box protein 1; ubi 92.0 0.1 3.5E-06 41.2 3.2 45 28-74 36-87 (106)
59 3htk_C E3 SUMO-protein ligase 90.7 0.22 7.4E-06 46.2 4.4 32 16-47 168-200 (267)
60 1vyx_A ORF K3, K3RING; zinc-bi 90.6 0.14 4.9E-06 36.7 2.5 51 28-112 5-57 (60)
61 2kr4_A Ubiquitin conjugation f 89.5 0.075 2.6E-06 39.8 0.3 22 26-47 11-32 (85)
62 2kre_A Ubiquitin conjugation f 87.9 0.17 5.9E-06 39.2 1.4 21 27-47 27-47 (100)
63 2ct0_A Non-SMC element 1 homol 86.3 0.3 1E-05 36.9 1.8 34 30-75 16-49 (74)
64 2c2l_A CHIP, carboxy terminus 82.8 0.35 1.2E-05 41.0 0.9 21 27-47 206-226 (281)
65 3k1l_B Fancl; UBC, ring, RWD, 82.6 1.3 4.4E-05 43.1 4.9 69 25-113 304-372 (381)
66 2a25_A Ubiquitin ligase SIAH1; 80.6 0.42 1.4E-05 41.0 0.7 29 128-156 35-65 (193)
67 4a0k_B E3 ubiquitin-protein li 79.4 0.4 1.4E-05 38.9 0.2 14 28-41 47-60 (117)
68 3mjh_B Early endosome antigen 79.4 1.1 3.8E-05 30.0 2.3 20 138-157 13-32 (34)
69 2yu4_A E3 SUMO-protein ligase 75.3 1.3 4.3E-05 33.4 1.9 36 28-76 6-42 (94)
70 1wim_A KIAA0161 protein; ring 72.3 1.8 6.1E-05 32.1 2.0 56 28-111 4-61 (94)
71 2jun_A Midline-1; B-BOX, TRIM, 71.1 1.3 4.5E-05 33.1 1.1 33 28-73 2-37 (101)
72 2f42_A STIP1 homology and U-bo 58.7 3.5 0.00012 35.7 1.5 35 28-75 105-139 (179)
73 2gli_A Protein (five-finger GL 58.7 5.2 0.00018 30.2 2.3 34 126-159 94-128 (155)
74 2e6s_A E3 ubiquitin-protein li 58.5 4.5 0.00015 30.5 1.9 48 13-70 8-57 (77)
75 1wim_A KIAA0161 protein; ring 50.0 12 0.00041 27.6 3.0 66 101-178 4-89 (94)
76 1zw8_A Zinc-responsive transcr 49.0 9.1 0.00031 27.1 2.1 27 128-154 37-64 (64)
77 2c7n_A Rabex-5, GEF 1, RAB gua 45.3 20 0.00068 27.9 3.6 47 119-177 6-65 (74)
78 2ent_A Krueppel-like factor 15 43.4 12 0.0004 22.8 1.8 39 122-161 5-44 (48)
79 2jny_A Uncharacterized BCR; st 37.2 10 0.00036 28.3 0.9 12 101-112 9-20 (67)
80 2ct1_A Transcriptional repress 36.1 22 0.00075 24.0 2.4 31 128-160 44-75 (77)
81 2bay_A PRE-mRNA splicing facto 34.7 16 0.00056 25.8 1.6 17 30-46 4-20 (61)
82 2dmd_A Zinc finger protein 64, 33.8 69 0.0024 21.9 4.8 57 102-160 36-94 (96)
83 1f62_A Transcription factor WS 33.7 12 0.00041 25.2 0.7 31 30-70 1-31 (51)
84 2jr6_A UPF0434 protein NMA0874 33.3 13 0.00046 27.7 1.0 13 101-113 7-19 (68)
85 2pk7_A Uncharacterized protein 33.3 13 0.00044 27.8 0.9 12 102-113 8-19 (69)
86 2hf1_A Tetraacyldisaccharide-1 33.2 13 0.00045 27.7 0.9 12 102-113 8-19 (68)
87 2js4_A UPF0434 protein BB2007; 32.7 14 0.00046 27.8 0.9 13 101-113 7-19 (70)
88 2d9h_A Zinc finger protein 692 32.5 25 0.00084 23.7 2.1 60 101-162 6-70 (78)
89 1wjp_A Zinc finger protein 295 31.9 21 0.0007 25.6 1.7 56 103-161 43-100 (107)
90 3nw0_A Non-structural maintena 31.7 20 0.0007 31.7 2.0 35 29-75 180-214 (238)
91 1wev_A Riken cDNA 1110020M19; 31.5 12 0.0004 28.6 0.4 38 22-70 10-49 (88)
92 2ku3_A Bromodomain-containing 30.9 22 0.00076 26.3 1.8 36 25-70 12-49 (71)
93 2kpi_A Uncharacterized protein 29.6 17 0.00057 26.1 0.9 12 101-112 9-20 (56)
94 1wil_A KIAA1045 protein; ring 29.4 38 0.0013 27.1 3.0 69 28-119 14-82 (89)
95 2adr_A ADR1; transcription reg 29.0 26 0.00088 22.3 1.7 53 103-157 3-57 (60)
96 3uk3_C Zinc finger protein 217 28.2 27 0.00094 21.8 1.7 50 103-154 5-56 (57)
97 2yt5_A Metal-response element- 28.0 17 0.00059 25.5 0.7 35 26-70 3-39 (66)
98 2yt9_A Zinc finger-containing 27.4 83 0.0028 21.5 4.2 54 102-157 35-92 (95)
99 3u5n_A E3 ubiquitin-protein li 26.8 38 0.0013 28.8 2.8 32 26-70 4-35 (207)
100 2k5r_A Uncharacterized protein 26.1 19 0.00067 28.7 0.8 13 102-114 8-20 (97)
101 2epx_A Zinc finger protein 28 25.6 48 0.0016 19.9 2.4 36 125-161 8-43 (47)
102 2rpc_A Zinc finger protein ZIC 24.6 53 0.0018 24.7 3.0 11 99-109 22-32 (155)
103 1wvk_A AT2G23090/F21P24.15; st 24.2 49 0.0017 26.1 2.8 43 97-164 40-82 (86)
104 2eln_A Zinc finger protein 406 23.9 42 0.0014 21.3 2.0 27 126-152 6-33 (38)
105 2dlq_A GLI-kruppel family memb 22.6 87 0.003 22.2 3.7 51 101-153 6-58 (124)
106 2d9k_A FLN29 gene product; zin 22.3 9 0.00031 27.2 -1.7 55 100-158 15-69 (75)
107 2l43_A N-teminal domain from h 21.6 87 0.003 23.8 3.7 33 28-70 24-58 (88)
108 2csh_A Zinc finger protein 297 20.7 48 0.0016 23.6 1.9 52 102-155 37-90 (110)
109 2lv2_A Insulinoma-associated p 20.4 1.1E+02 0.0038 22.5 3.9 55 101-157 27-83 (85)
110 1x3c_A Zinc finger protein 292 20.3 83 0.0028 24.2 3.3 36 125-160 23-59 (73)
111 2yte_A Zinc finger protein 473 20.1 74 0.0025 18.5 2.5 34 125-160 6-39 (42)
No 1
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.83 E-value=1.7e-09 Score=84.88 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=72.2
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|.|.|. -.| +..|+.++-+... ..||+
T Consensus 17 ~~~~C~IC~~~~~~p~~~~Cg------------H~f-C~~Ci~~~~~~~~-------------------------~~CP~ 58 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCG------------HRF-CKACIIKSIRDAG-------------------------HKCPV 58 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTS------------CEE-EHHHHHHHHHHHC-------------------------SBCTT
T ss_pred CCCCCCcCChhhcCeEECCcC------------Chh-hHHHHHHHHhhCC-------------------------CCCCC
Confidence 678999999999999987553 111 3578888765421 27999
Q ss_pred cccccccEE--EcchhHHhhccccCcCcccCccccccHHHHHHhhhhhCCCCCCCCCC
Q 021835 108 CRGEVTGWV--VADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPSKID 163 (307)
Q Consensus 108 CRG~VkGWt--VVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~arP~eVD 163 (307)
||..+..-. .....++.|+.-+-.|...+|.++|+|.+|.+|.++-|..+-|..+|
T Consensus 59 Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~~~~~~~~ 116 (118)
T 3hct_A 59 DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALLEHHHH 116 (118)
T ss_dssp TCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC--------
T ss_pred CCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhhhhhhccc
Confidence 999987633 34567788888888999999999999999999999999999887766
No 2
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.48 E-value=9e-08 Score=74.31 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=67.9
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++.+.++|.+.| +-.| +..|++++-+.. ...||+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~~-------------------------~~~CP~ 63 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSC------------KHLF-CRICILRCLKVM-------------------------GSYCPS 63 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTT------------SCEE-EHHHHHHHHHHT-------------------------CSBCTT
T ss_pred CCCCCCCCCcHhcCcEEcCC------------CCcc-cHHHHHHHHhHC-------------------------cCcCCC
Confidence 57899999999999998743 3334 567888887651 146999
Q ss_pred cccccccEEE---cchhHHhhccccCcCcccCccccccHHHHHHhhhh
Q 021835 108 CRGEVTGWVV---ADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQL 152 (307)
Q Consensus 108 CRG~VkGWtV---Ve~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~ 152 (307)
||..+..-.+ ....++.++.-+-.|...+|.+.|+|.+|.+|.+.
T Consensus 64 Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 64 CRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSS 111 (116)
T ss_dssp TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEHHHHHHHHHT
T ss_pred CCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhHhHHHHHHHH
Confidence 9999876443 34456667777888999999999999999999963
No 3
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.89 E-value=5.9e-06 Score=67.87 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=66.2
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccC
Q 021835 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (307)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~C 105 (307)
--++.+||||++...++|.+.| +-.| ...|+.++-+. ....|
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~C------------gH~F-C~~Ci~~~~~~-------------------------~~~~C 69 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQC------------GHRY-CSFCLASILSS-------------------------GPQNC 69 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTT------------SCEE-EHHHHHHHGGG-------------------------SCEEC
T ss_pred CCcCcCCCCCChhhcCcEECCC------------CCcc-CHHHHHHHHhc-------------------------CCCCC
Confidence 3467899999999999988643 3222 24688887541 11579
Q ss_pred cccccccc-----------cEEEcchhHHhhccccCcCcccCccccccHHHHHH-hhhh
Q 021835 106 PLCRGEVT-----------GWVVADKVRDYLNEKKRCCEEDQCTFAGTYLELRK-HAQL 152 (307)
Q Consensus 106 PLCRG~Vk-----------GWtVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrK-Har~ 152 (307)
|+||.++. .......+++.|+.-+=.|...+|...|++.+|.. |...
T Consensus 70 P~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~Cpn~GC~~~~~l~~l~~~H~~~ 128 (141)
T 3knv_A 70 AACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGR 128 (141)
T ss_dssp HHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEECCSTTCCCEEEHHHHHHHTTTC
T ss_pred CCCCCcccccccccccchhhhcccHHHHHHHcccccccCCCCCCCEeEHHHHHHHHHHH
Confidence 99999752 23345567778888888899999999999999998 8753
No 4
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.85 E-value=8.5e-06 Score=66.97 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=64.4
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|.+.| +-.| .+.|+.++-+... ..||+
T Consensus 17 ~~~~C~IC~~~~~~pv~~~C------------gH~f-C~~Ci~~~~~~~~-------------------------~~CP~ 58 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPC------------GHRF-CKACIIKSIRDAG-------------------------HKCPV 58 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTT------------SCEE-EHHHHHHHHHHHC-------------------------SBCTT
T ss_pred CCCCCCCCChhhcCcEECCC------------CCHH-HHHHHHHHHHhCC-------------------------CCCCC
Confidence 67899999999999987644 2222 2457777655311 27999
Q ss_pred cccccccE--EEcchhHHhhccccCcCcccCccccccHHHHHHhhh
Q 021835 108 CRGEVTGW--VVADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQ 151 (307)
Q Consensus 108 CRG~VkGW--tVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar 151 (307)
||..+..- .....+++.|+.-+=.|...+|...++|.+|.+|.+
T Consensus 59 Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~~~~l~~H~~ 104 (170)
T 3hcs_A 59 DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104 (170)
T ss_dssp TCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEEGGGHHHHHT
T ss_pred CccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceecHhHHHHHHh
Confidence 99998763 234556677777778898899999999999999984
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00055 Score=48.33 Aligned_cols=51 Identities=31% Similarity=0.714 Sum_probs=36.3
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCc
Q 021835 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CP 106 (307)
-++..||||++...++|+|.| +-.| +..|+.++.+. . .....||
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~C------------gH~f-C~~Ci~~~~~~---~--------------------~~~~~CP 61 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDC------------GHNF-CLKCITQIGET---S--------------------CGFFKCP 61 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTT------------CCEE-EHHHHHHHCSS---S--------------------CSCCCCS
T ss_pred ccCCEeccCCcccCCeEEcCC------------CChh-hHHHHHHHHHc---C--------------------CCCCCCC
Confidence 367899999999999999854 2221 45788776541 0 1346899
Q ss_pred ccccccc
Q 021835 107 LCRGEVT 113 (307)
Q Consensus 107 LCRG~Vk 113 (307)
+||..|.
T Consensus 62 ~Cr~~~~ 68 (73)
T 2ysl_A 62 LCKTSVR 68 (73)
T ss_dssp SSCCCCC
T ss_pred CCCCcCC
Confidence 9999875
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.13 E-value=0.00044 Score=46.35 Aligned_cols=49 Identities=35% Similarity=0.750 Sum_probs=35.8
Q ss_pred CccccccccccCCCc----eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCC
Q 021835 27 WDDVTCPICLDFPHN----GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCR 102 (307)
Q Consensus 27 WedvtCpICME~PHN----AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~ 102 (307)
.++..||||++...+ .++|.| +-. =|..|++++-+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C------------gH~-fc~~Ci~~~~~~~-------------------------- 43 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPC------------GHL-LHRTCYEEMLKEG-------------------------- 43 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTT------------SCE-EETTHHHHHHHHT--------------------------
T ss_pred CCCCcCcccChhhcCCCcCeEecCC------------CCc-ccHHHHHHHHHcC--------------------------
Confidence 457789999998765 555544 322 2678999987641
Q ss_pred ccCccccccccc
Q 021835 103 PACPLCRGEVTG 114 (307)
Q Consensus 103 L~CPLCRG~VkG 114 (307)
..||+||.+|.|
T Consensus 44 ~~CP~Cr~~~~g 55 (55)
T 2ecm_A 44 YRCPLCSGPSSG 55 (55)
T ss_dssp CCCTTSCCSSCC
T ss_pred CcCCCCCCcCCC
Confidence 469999999886
No 7
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.12 E-value=0.0009 Score=47.74 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=38.0
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|+|.| +-.| +..|+.++-+.... ......||+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~~~~--------------------~~~~~~CP~ 64 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADC------------NHSF-CRACITLNYESNRN--------------------TDGKGNCPV 64 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTT------------SCCB-CHHHHHHHHHHSBC--------------------TTSCBCCTT
T ss_pred cCCCCcCCChhhCcceeCCC------------CCHH-HHHHHHHHHHhccC--------------------CCCCCCCCC
Confidence 57899999999999997754 2222 35788887765321 123478999
Q ss_pred cccccc
Q 021835 108 CRGEVT 113 (307)
Q Consensus 108 CRG~Vk 113 (307)
||..+.
T Consensus 65 Cr~~~~ 70 (85)
T 2ecw_A 65 CRVPYP 70 (85)
T ss_dssp TCCCCC
T ss_pred CCCcCC
Confidence 999875
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.12 E-value=0.00045 Score=55.42 Aligned_cols=52 Identities=23% Similarity=0.675 Sum_probs=37.5
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|+|.| +-.| +..|+.++-+. ...||+
T Consensus 52 ~~~~C~iC~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~~--------------------------~~~CP~ 92 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNC------------AHSF-CSYCINEWMKR--------------------------KIECPI 92 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETT------------SCEE-EHHHHHHHTTT--------------------------CSBCTT
T ss_pred ccCCCcccCcccCCceECCC------------CCCc-cHHHHHHHHHc--------------------------CCcCCC
Confidence 45789999999999999854 3333 45787765321 135999
Q ss_pred cccccccEEEc
Q 021835 108 CRGEVTGWVVA 118 (307)
Q Consensus 108 CRG~VkGWtVV 118 (307)
||..|....+-
T Consensus 93 Cr~~~~~~~~~ 103 (138)
T 4ayc_A 93 CRKDIKSKTYS 103 (138)
T ss_dssp TCCBCCCEEEC
T ss_pred CCCcCCCCCCc
Confidence 99999887653
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.12 E-value=0.00026 Score=54.28 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=38.3
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccc------cCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCC
Q 021835 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFV------CDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSED 99 (307)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYM------CdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~ 99 (307)
..++..||||||.-.+++...=..-.++-.|.+ |+-. =|..||+++-+...+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~--------------------- 79 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNK--------------------- 79 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCC---------------------
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccC---------------------
Confidence 345679999999876654311111112222222 4433 378999999754221
Q ss_pred CCCccCcccccccc
Q 021835 100 SCRPACPLCRGEVT 113 (307)
Q Consensus 100 ~~~L~CPLCRG~Vk 113 (307)
.....||+||..+.
T Consensus 80 ~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 80 DGSLQCPSCKTIYG 93 (114)
T ss_dssp SSCCBCTTTCCBSS
T ss_pred CCCCcCCCCCCccC
Confidence 13478999997663
No 10
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.05 E-value=0.00048 Score=49.74 Aligned_cols=37 Identities=24% Similarity=0.589 Sum_probs=27.8
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021835 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (307)
-++.+||||++...++|+|.+ |+-.| +..|++++-+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~-----------CgH~f-C~~Ci~~~~~~ 49 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPC-----------CGNSY-CDECIRTALLE 49 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSS-----------SCCEE-CTTHHHHHHHH
T ss_pred CCCCCCcCCChHHhCCeEcCC-----------CCCHH-HHHHHHHHHHh
Confidence 368899999999999999862 22222 45799988775
No 11
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.03 E-value=0.00032 Score=54.91 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=37.2
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|.|.| +-+| +..|+.++-+. ....||+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~-------------------------~~~~CP~ 92 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVC------------QHNV-CKDCLDRSFRA-------------------------QVFSCPA 92 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTT------------SCEE-EHHHHHHHHHT-------------------------TCCBCTT
T ss_pred cCCCCCcCChHHcCcEEeeC------------CCcc-cHHHHHHHHhH-------------------------CcCCCCC
Confidence 67899999999999999844 4344 45799888761 1157999
Q ss_pred ccccccc
Q 021835 108 CRGEVTG 114 (307)
Q Consensus 108 CRG~VkG 114 (307)
||..+..
T Consensus 93 Cr~~~~~ 99 (124)
T 3fl2_A 93 CRYDLGR 99 (124)
T ss_dssp TCCBCCT
T ss_pred CCccCCC
Confidence 9999865
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.00066 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.9
Q ss_pred cCCccccccccccCCCceeeeec
Q 021835 25 TNWDDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 25 keWedvtCpICME~PHNAVLLlC 47 (307)
...++.+||||++.+.++|+|.|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~C 33 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPC 33 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETT
T ss_pred cCCCCCCCccCCcccCCCEEccC
Confidence 46788999999999999999854
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.03 E-value=0.0003 Score=53.75 Aligned_cols=49 Identities=24% Similarity=0.564 Sum_probs=36.8
Q ss_pred CccccccccccCCCceee-eecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccC
Q 021835 27 WDDVTCPICLDFPHNGVL-LLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (307)
Q Consensus 27 WedvtCpICME~PHNAVL-LlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~C 105 (307)
-++.+||||++.+.++|. +.| +-.| +..|+.++-+.. ...|
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~C------------gH~F-C~~Ci~~~~~~~-------------------------~~~C 61 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHC------------SKLC-CFSCIRRWLTEQ-------------------------RAQC 61 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTT------------CCEE-EHHHHHHHHHHT-------------------------CSBC
T ss_pred CCCCCCccCCccccCccccCCC------------CChh-hHHHHHHHHHHC-------------------------cCCC
Confidence 378999999999999998 543 3333 567888776542 1579
Q ss_pred cccccccc
Q 021835 106 PLCRGEVT 113 (307)
Q Consensus 106 PLCRG~Vk 113 (307)
|+||..+.
T Consensus 62 P~Cr~~~~ 69 (100)
T 3lrq_A 62 PHCRAPLQ 69 (100)
T ss_dssp TTTCCBCC
T ss_pred CCCCCcCC
Confidence 99999985
No 14
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.00 E-value=0.00035 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.4
Q ss_pred CCccccccccccCCCceeeeec
Q 021835 26 NWDDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 26 eWedvtCpICME~PHNAVLLlC 47 (307)
--++..|+|||+.+.++|+|-|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pC 42 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPC 42 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETT
T ss_pred CccCCCCCCCCCCCCCEEEcCC
Confidence 3467899999999999999977
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.00058 Score=48.78 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=37.5
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCc
Q 021835 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CP 106 (307)
-++.+||||++.+.++|.|. .|+-.| +..|+.++-+. . ..||
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~~---~-----------------------~~CP 54 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTIT-----------ECLHTF-CKSCIVRHFYY---S-----------------------NRCP 54 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECS-----------SSCCEE-CHHHHHHHHHH---C-----------------------SSCT
T ss_pred CCCCCCCCCChHHHCcCEEC-----------CCCCHH-HHHHHHHHHHc---C-----------------------CcCC
Confidence 46889999999999998862 144444 56899888754 0 4699
Q ss_pred cccccccc
Q 021835 107 LCRGEVTG 114 (307)
Q Consensus 107 LCRG~VkG 114 (307)
+||..|.-
T Consensus 55 ~Cr~~~~~ 62 (72)
T 2djb_A 55 KCNIVVHQ 62 (72)
T ss_dssp TTCCCCCS
T ss_pred CcCcccCc
Confidence 99998864
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.87 E-value=0.00038 Score=49.68 Aligned_cols=55 Identities=24% Similarity=0.527 Sum_probs=36.0
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|+|.| +-.| +..|+.++-+.... .......||+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~C------------gH~f-C~~Ci~~~~~~~~~-------------------~~~~~~~CP~ 58 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDC------------GHSL-CRACITVSNKEAVT-------------------SMGGKSSCPV 58 (79)
T ss_dssp CCCEETTTTEECSSCCCCSS------------SCCC-CHHHHSCCCCCCSS-------------------SCCCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCC------------CCHH-HHHHHHHHHHhccc-------------------CCCCCCcCCC
Confidence 57899999999999988744 3333 34666655332110 0124578999
Q ss_pred ccccccc
Q 021835 108 CRGEVTG 114 (307)
Q Consensus 108 CRG~VkG 114 (307)
||..+.-
T Consensus 59 Cr~~~~~ 65 (79)
T 2egp_A 59 CGISYSF 65 (79)
T ss_dssp SCCCCCS
T ss_pred CCCcCCH
Confidence 9999863
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.0007 Score=48.34 Aligned_cols=54 Identities=28% Similarity=0.623 Sum_probs=38.1
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|+|.| +-.| +..|+.++-+..... .....||+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~~~~~--------------------~~~~~CP~ 64 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDC------------GHSF-CQACLTANHKKSMLD--------------------KGESSCPV 64 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSS------------SCCB-CTTHHHHHHHHHHHT--------------------TSCCCCTT
T ss_pred CCCCCCCCCcccCCceeCCC------------CCHH-HHHHHHHHHHHhhcC--------------------CCCCcCCC
Confidence 67899999999999988744 3333 457998876652111 12478999
Q ss_pred ccccccc
Q 021835 108 CRGEVTG 114 (307)
Q Consensus 108 CRG~VkG 114 (307)
||..+.-
T Consensus 65 Cr~~~~~ 71 (85)
T 2ecv_A 65 CRISYQP 71 (85)
T ss_dssp TCCSSCS
T ss_pred CCCccCH
Confidence 9998863
No 18
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.85 E-value=0.0007 Score=51.28 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=37.5
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++..||||++.+.++|+|. |+-.| +..|+.++-+... ....||+
T Consensus 20 ~~~~C~IC~~~~~~p~~~~------------CgH~f-C~~Ci~~~~~~~~-----------------------~~~~CP~ 63 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTK------------CDHIF-CKFCMLKLLNQKK-----------------------GPSQCPL 63 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCT------------TSCCC-CSHHHHHHHHSSS-----------------------SSCCCTT
T ss_pred CCCCCcccChhhcCeEECC------------CCCHH-HHHHHHHHHHhCC-----------------------CCCCCcC
Confidence 4678999999999999874 44444 5679988876321 1268999
Q ss_pred ccccccc
Q 021835 108 CRGEVTG 114 (307)
Q Consensus 108 CRG~VkG 114 (307)
||..+..
T Consensus 64 Cr~~~~~ 70 (112)
T 1jm7_A 64 CKNDITK 70 (112)
T ss_dssp TSCCCCT
T ss_pred CCCcCCH
Confidence 9998764
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00075 Score=49.08 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=37.8
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccC
Q 021835 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (307)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~C 105 (307)
.-++..||||++...++|+|.| +-.| +..|+.++-+. ...|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~--------------------------~~~C 52 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKC------------RHYF-CESCALEHFRA--------------------------TPRC 52 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTT------------SCEE-EHHHHHHHHHH--------------------------CSBC
T ss_pred CCCCCCCcCCCchhcCeeEccC------------CCHh-HHHHHHHHHHC--------------------------CCcC
Confidence 4467899999999999998744 3334 56788887653 1469
Q ss_pred ccccccccc
Q 021835 106 PLCRGEVTG 114 (307)
Q Consensus 106 PLCRG~VkG 114 (307)
|+||..+.+
T Consensus 53 P~Cr~~~~~ 61 (81)
T 2csy_A 53 YICDQPTGG 61 (81)
T ss_dssp SSSCCBCCS
T ss_pred CCcCccccc
Confidence 999999974
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.75 E-value=0.0006 Score=47.81 Aligned_cols=48 Identities=19% Similarity=0.468 Sum_probs=36.1
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|+|. |+-.| +..|++++-+ . ....||+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~------------CgH~f-C~~Ci~~~~~----~---------------------~~~~CP~ 55 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTE------------CGHRF-CESCMAALLS----S---------------------SSPKCTA 55 (66)
T ss_dssp CCEECTTTCCEESSCCCCS------------SSCCC-CHHHHHHHHT----T---------------------SSCCCTT
T ss_pred cCCCCCCCChHhcCeeECC------------CCCHH-HHHHHHHHHH----h---------------------CcCCCCC
Confidence 5789999999999999864 44444 5688888864 0 1256999
Q ss_pred cccccc
Q 021835 108 CRGEVT 113 (307)
Q Consensus 108 CRG~Vk 113 (307)
||..|.
T Consensus 56 Cr~~~~ 61 (66)
T 2ecy_A 56 CQESIV 61 (66)
T ss_dssp TCCCCC
T ss_pred CCcCCC
Confidence 999875
No 21
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.71 E-value=0.0036 Score=47.84 Aligned_cols=48 Identities=19% Similarity=0.550 Sum_probs=35.7
Q ss_pred ccccccccccCCCceeee-ecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCc
Q 021835 28 DDVTCPICLDFPHNGVLL-LCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (307)
Q Consensus 28 edvtCpICME~PHNAVLL-lCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CP 106 (307)
++.+||||++..-++|.| .| +-+| +..|+.++-+. ...||
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~C------------gH~f-C~~Ci~~~~~~--------------------------~~~CP 54 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIEC------------LHSF-CKTCIVRYLET--------------------------SKYCP 54 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTT------------CCEE-EHHHHHHHHTS--------------------------CSBCT
T ss_pred CcCCCccCChHHhCcCEeCCC------------CChh-hHHHHHHHHHh--------------------------CCcCc
Confidence 678999999999999987 43 3333 45677766532 15799
Q ss_pred cccccccc
Q 021835 107 LCRGEVTG 114 (307)
Q Consensus 107 LCRG~VkG 114 (307)
+||..+..
T Consensus 55 ~Cr~~~~~ 62 (108)
T 2ckl_A 55 ICDVQVHK 62 (108)
T ss_dssp TTCCBSCS
T ss_pred CCCccccc
Confidence 99999874
No 22
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.68 E-value=0.00074 Score=55.26 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=36.3
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|.|+ -|+-.| +..|++++-+. ....||+
T Consensus 53 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~~-------------------------~~~~CP~ 95 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTK-----------ECLHRF-CADCIITALRS-------------------------GNKECPT 95 (165)
T ss_dssp HHHBCTTTSSBCSSEEEET-----------TTCCEE-EHHHHHHHHHT-------------------------TCCBCTT
T ss_pred CCCCCcccChHhhCcCEeC-----------CCCChh-HHHHHHHHHHh-------------------------CcCCCCC
Confidence 6779999999999999883 233333 56788888652 0156999
Q ss_pred cccccc
Q 021835 108 CRGEVT 113 (307)
Q Consensus 108 CRG~Vk 113 (307)
||..|.
T Consensus 96 Cr~~~~ 101 (165)
T 2ckl_B 96 CRKKLV 101 (165)
T ss_dssp TCCBCC
T ss_pred CCCcCC
Confidence 999884
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.65 E-value=0.001 Score=49.16 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=35.4
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCc
Q 021835 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CP 106 (307)
-++.+||||++...++|+|.| |+-+| ...|+.++-+.. ....||
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~-----------CgH~f-C~~Ci~~~~~~~------------------------~~~~CP 54 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPC-----------CGNSY-CDECIRTALLES------------------------DEHTCP 54 (92)
T ss_dssp CTTTEETTTTEECSSCEECTT-----------TCCEE-CHHHHHHHHHHC------------------------TTCCCT
T ss_pred CcCCCCCCCChhhcCceECCC-----------CCCHH-HHHHHHHHHHhc------------------------CCCcCc
Confidence 367899999999999999862 22222 245887775531 125899
Q ss_pred cccccc
Q 021835 107 LCRGEV 112 (307)
Q Consensus 107 LCRG~V 112 (307)
+||..+
T Consensus 55 ~Cr~~~ 60 (92)
T 3ztg_A 55 TCHQND 60 (92)
T ss_dssp TTCCSS
T ss_pred CCCCcC
Confidence 999986
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0023 Score=46.32 Aligned_cols=52 Identities=23% Similarity=0.509 Sum_probs=37.9
Q ss_pred CccccccccccCCCc----eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCC
Q 021835 27 WDDVTCPICLDFPHN----GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCR 102 (307)
Q Consensus 27 WedvtCpICME~PHN----AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~ 102 (307)
-++..||||++...+ .|+|.|. -.| |..|++++.+... ..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg------------H~f-C~~Ci~~~~~~~~-----------------------~~ 56 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG------------HTI-CRQCLEKLLASSI-----------------------NG 56 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS------------CEE-EHHHHHHHHHHCS-----------------------SC
T ss_pred cCCCCCccCCccccccCCCeEECCCC------------Chh-hHHHHHHHHHcCC-----------------------CC
Confidence 367889999999998 8877652 112 5689998877531 23
Q ss_pred ccCccccccccc
Q 021835 103 PACPLCRGEVTG 114 (307)
Q Consensus 103 L~CPLCRG~VkG 114 (307)
..||+||..+.-
T Consensus 57 ~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 57 VRCPFCSKITRI 68 (88)
T ss_dssp BCCTTTCCCBCC
T ss_pred cCCCCCCCcccc
Confidence 689999998764
No 25
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.59 E-value=0.0011 Score=49.46 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=18.4
Q ss_pred ccccccccccCCCceeeeecc
Q 021835 28 DDVTCPICLDFPHNGVLLLCS 48 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCS 48 (307)
++..|+|||+.+.++|+|-|-
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCg 37 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCG 37 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTC
T ss_pred CCCEeEEeCcccCcEEEECCC
Confidence 567899999999999999763
No 26
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.00076 Score=49.04 Aligned_cols=20 Identities=30% Similarity=0.693 Sum_probs=18.2
Q ss_pred ccccccccccCCCceeeeec
Q 021835 28 DDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlC 47 (307)
++.+|+||++.+.++|+|-|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pC 43 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPC 43 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSS
T ss_pred CCCCCCcCCCCCCCEEEecC
Confidence 67789999999999999877
No 27
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.47 E-value=0.00054 Score=52.88 Aligned_cols=20 Identities=30% Similarity=0.757 Sum_probs=17.9
Q ss_pred ccccccccccCCCceeeeec
Q 021835 28 DDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlC 47 (307)
++.+||||++...++|.|.|
T Consensus 14 ~~~~C~iC~~~~~~p~~~~C 33 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPC 33 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTT
T ss_pred CCCCCccCCcccCceeEcCC
Confidence 68899999999999999855
No 28
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.47 E-value=0.0024 Score=45.68 Aligned_cols=52 Identities=27% Similarity=0.657 Sum_probs=36.7
Q ss_pred ccccccccccCCCceeee--ecccCCCCCccc-ccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCcc
Q 021835 28 DDVTCPICLDFPHNGVLL--LCSSYEKGCRPF-VCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (307)
Q Consensus 28 edvtCpICME~PHNAVLL--lCSSh~KGCRPY-MCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~ 104 (307)
++..|+||||.|-|+|+| -| +-. .| ..|.++..+. ...
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pC-------gH~~~C------~~C~~~~~~~--------------------------~~~ 47 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKT-------GHLMAC------FTCAKKLKKR--------------------------NKP 47 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTE-------EEEEEC------HHHHHHHHHT--------------------------TCC
T ss_pred CcCCCCcCCCCCCCEEEECCCC-------CChhhH------HHHHHHHHHc--------------------------CCc
Confidence 567899999999999987 44 221 22 2577777642 036
Q ss_pred CcccccccccEEEc
Q 021835 105 CPLCRGEVTGWVVA 118 (307)
Q Consensus 105 CPLCRG~VkGWtVV 118 (307)
||+||..|.....+
T Consensus 48 CPiCR~~i~~~i~i 61 (64)
T 2vje_A 48 CPVCRQPIQMIVLT 61 (64)
T ss_dssp CTTTCCCCCEEEEE
T ss_pred CCCcCcchhceEee
Confidence 99999999876543
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.33 E-value=0.0014 Score=44.70 Aligned_cols=48 Identities=31% Similarity=0.616 Sum_probs=35.0
Q ss_pred ccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCC
Q 021835 28 DDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDS 100 (307)
Q Consensus 28 edvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~ 100 (307)
++..||||++...+. |++.|. -. =|..|++++-+. .
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg------------H~-fc~~Ci~~~~~~---~--------------------- 44 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG------------HV-FCSQCLRDSLKN---A--------------------- 44 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS------------CE-EEHHHHHHHHHH---C---------------------
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC------------Cc-hhHHHHHHHHHc---C---------------------
Confidence 578999999988775 677653 11 167899988764 0
Q ss_pred CCccCccccccccc
Q 021835 101 CRPACPLCRGEVTG 114 (307)
Q Consensus 101 ~~L~CPLCRG~VkG 114 (307)
..||+||..+..
T Consensus 45 --~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 45 --NTCPTCRKKINH 56 (64)
T ss_dssp --SBCTTTCCBCTT
T ss_pred --CCCCCCCccCCc
Confidence 379999998763
No 30
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.30 E-value=0.0015 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.1
Q ss_pred CCccccccccccCCCceeeeecc
Q 021835 26 NWDDVTCPICLDFPHNGVLLLCS 48 (307)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCS 48 (307)
+.++.+||||++...+.|+|.|.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~Cg 25 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCL 25 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTS
T ss_pred cccCCCceEeCCccCCeEEcCCC
Confidence 56889999999999999988774
No 31
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.29 E-value=0.0023 Score=46.63 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.2
Q ss_pred ccccccccccCCCceeeeecc
Q 021835 28 DDVTCPICLDFPHNGVLLLCS 48 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCS 48 (307)
++..|+|||+.|-+.|||-|-
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCg 34 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCR 34 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTT
T ss_pred CCCCCCCcCcCCCCEEEECCC
Confidence 467899999999999999763
No 32
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.28 E-value=0.0016 Score=61.05 Aligned_cols=21 Identities=29% Similarity=0.721 Sum_probs=19.0
Q ss_pred CccccccccccCCCceeeeec
Q 021835 27 WDDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlC 47 (307)
-++..|||||+.+.++|+|-|
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpC 313 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPC 313 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETT
T ss_pred cCCCCCCccCCcCCceEEcCC
Confidence 367899999999999999977
No 33
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.0042 Score=47.03 Aligned_cols=57 Identities=21% Similarity=0.458 Sum_probs=39.4
Q ss_pred CCccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCc
Q 021835 26 NWDDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRP 103 (307)
Q Consensus 26 eWedvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L 103 (307)
+-++..|+||++. +-+.++|-| .|+-. .-+-|..||+|+-+... +.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC-----~C~Gs---~h~fH~~Cl~~Wl~~~~------------------------~~ 59 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPC-----HCTGS---LHFVHQACLQQWIKSSD------------------------TR 59 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSS-----SCCSS---SCCEETTHHHHHHHHHC------------------------CS
T ss_pred CCCCCCCeEcCccccCCCeeEecc-----ccCCc---CCeeCHHHHHHHHhhCC------------------------CC
Confidence 4567899999963 356666655 22211 35789999999987631 25
Q ss_pred cCccccccccc
Q 021835 104 ACPLCRGEVTG 114 (307)
Q Consensus 104 ~CPLCRG~VkG 114 (307)
.|||||.++.-
T Consensus 60 ~CplCr~~~~~ 70 (80)
T 2d8s_A 60 CCELCKYEFIM 70 (80)
T ss_dssp BCSSSCCBCCC
T ss_pred CCCCCCCeeec
Confidence 89999998753
No 34
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.25 E-value=0.003 Score=44.33 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=33.8
Q ss_pred CccccccccccCC---CceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCc
Q 021835 27 WDDVTCPICLDFP---HNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRP 103 (307)
Q Consensus 27 WedvtCpICME~P---HNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L 103 (307)
=++..|+||++.- .+.++|. |+-.| |..|+.++-+.. .
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~------------C~H~f-c~~Ci~~~~~~~--------------------------~ 52 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP------------CMHLF-HQVCVDQWLITN--------------------------K 52 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT------------TSCEE-EHHHHHHHHHHC--------------------------S
T ss_pred CCCCCCeeCCccccCCCcEEEeC------------CCCHH-HHHHHHHHHHcC--------------------------C
Confidence 3567899998765 4455554 44343 688999987640 1
Q ss_pred cCccccccccc
Q 021835 104 ACPLCRGEVTG 114 (307)
Q Consensus 104 ~CPLCRG~VkG 114 (307)
.||+||..|..
T Consensus 53 ~CP~Cr~~~~~ 63 (69)
T 2kiz_A 53 KCPICRVDIEA 63 (69)
T ss_dssp BCTTTCSBSCS
T ss_pred CCcCcCccccC
Confidence 49999998864
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.23 E-value=0.0026 Score=42.67 Aligned_cols=34 Identities=29% Similarity=0.735 Sum_probs=22.7
Q ss_pred ccccccccccCCCc---eeeeecccCCCCCcccccCCCCCccchHHHHH
Q 021835 28 DDVTCPICLDFPHN---GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFK 73 (307)
Q Consensus 28 edvtCpICME~PHN---AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFk 73 (307)
++..|+||++...+ .+.|. . |+-. =|..|++++-
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~------~-----C~H~-f~~~Ci~~w~ 40 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP------R-----CGHG-FHAECVDMWL 40 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS------S-----SCCE-ECTTHHHHTT
T ss_pred CCCcCccCCccccCCCceEECC------C-----CCCc-ccHHHHHHHH
Confidence 45789999998766 55554 1 3322 3678998874
No 36
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.21 E-value=0.0042 Score=43.30 Aligned_cols=50 Identities=36% Similarity=0.731 Sum_probs=36.0
Q ss_pred ccccccccccCCCce-eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCc
Q 021835 28 DDVTCPICLDFPHNG-VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (307)
Q Consensus 28 edvtCpICME~PHNA-VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CP 106 (307)
++..||||++.+.+. ++|.| +-. =|..|+.++-+.. ..||
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C------------~H~-fc~~Ci~~~~~~~--------------------------~~CP 44 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPC------------LHA-FCYVCITRWIRQN--------------------------PTCP 44 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTT------------TEE-ESTTHHHHHHHHS--------------------------CSTT
T ss_pred CCCCCeeCCccccCCcEecCC------------CCe-eHHHHHHHHHhCc--------------------------CcCc
Confidence 356899999999985 55543 322 2568999876430 2699
Q ss_pred ccccccccEE
Q 021835 107 LCRGEVTGWV 116 (307)
Q Consensus 107 LCRG~VkGWt 116 (307)
+||..|..+.
T Consensus 45 ~Cr~~~~~~~ 54 (68)
T 1chc_A 45 LCKVPVESVV 54 (68)
T ss_dssp TTCCCCCCEE
T ss_pred CCChhhHhhh
Confidence 9999999875
No 37
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.0025 Score=44.86 Aligned_cols=48 Identities=31% Similarity=0.835 Sum_probs=34.2
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCc
Q 021835 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACP 106 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CP 106 (307)
-++..||||++.+.+ |+|.|. -. -|..|++++.+ ....||
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~Cg------------H~-fc~~Ci~~~~~--------------------------~~~~CP 52 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCA------------HS-FCQKCIDKWSD--------------------------RHRNCP 52 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTT------------EE-ECHHHHHHSSC--------------------------CCSSCH
T ss_pred CCCCCCeeCCcCccC-cccCCC------------Cc-ccHHHHHHHHH--------------------------CcCcCC
Confidence 467899999999999 877662 11 15678876533 125699
Q ss_pred cccccccc
Q 021835 107 LCRGEVTG 114 (307)
Q Consensus 107 LCRG~VkG 114 (307)
+||.+|..
T Consensus 53 ~Cr~~~~~ 60 (70)
T 2ecn_A 53 ICRLQMTG 60 (70)
T ss_dssp HHHHCTTC
T ss_pred CcCCcccC
Confidence 99998864
No 38
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.17 E-value=0.0021 Score=46.10 Aligned_cols=37 Identities=22% Similarity=0.617 Sum_probs=24.8
Q ss_pred CCccccccccccCCCce---eeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021835 26 NWDDVTCPICLDFPHNG---VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (307)
Q Consensus 26 eWedvtCpICME~PHNA---VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (307)
.-++..|+|||+...+. +.|.| +-. =|..|++++-+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C------------~H~-fh~~Ci~~w~~~ 59 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPC------------NHE-FHAKCVDKWLKA 59 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETT------------TEE-EETTHHHHHHHH
T ss_pred cCCCCCCeECCcccCCCCeEEEECC------------CCH-hHHHHHHHHHHc
Confidence 34678999999765554 55544 222 368899998753
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.12 E-value=0.0035 Score=47.12 Aligned_cols=49 Identities=27% Similarity=0.662 Sum_probs=35.6
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|.|. -|+-.| +..|+.++.+. ...||+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~-----------~CgH~f-C~~Ci~~~~~~--------------------------~~~CP~ 62 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIP-----------QCSHNY-CSLCIRKFLSY--------------------------KTQCPT 62 (99)
T ss_dssp HHTBCTTTCSBCSSEEECT-----------TTCCEE-EHHHHHHHHTT--------------------------CCBCTT
T ss_pred CCCCcccCChhhCCcCEEC-----------CCCCHh-hHHHHHHHHHC--------------------------CCCCCC
Confidence 5689999999999999883 123222 46788877641 147999
Q ss_pred ccccccc
Q 021835 108 CRGEVTG 114 (307)
Q Consensus 108 CRG~VkG 114 (307)
||..+..
T Consensus 63 Cr~~~~~ 69 (99)
T 2y43_A 63 CCVTVTE 69 (99)
T ss_dssp TCCBCCG
T ss_pred CCCcCCh
Confidence 9999874
No 40
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.96 E-value=0.0058 Score=43.53 Aligned_cols=53 Identities=25% Similarity=0.627 Sum_probs=36.5
Q ss_pred cccccccccCCCceeeeecccCCCCCccc-ccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 29 DVTCPICLDFPHNGVLLLCSSYEKGCRPF-VCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 29 dvtCpICME~PHNAVLLlCSSh~KGCRPY-MCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
+..|+||||.|-|+|+|.- .|.-. .| ..|..+.++. ...||+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~-----pCgH~~~C------~~C~~~~~~~--------------------------~~~CPi 49 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHG-----RTGHLVTC------FHCARRLKKA--------------------------GASCPI 49 (63)
T ss_dssp GSBCTTTSSSBSCEEEEET-----TEEEEEEC------HHHHHHHHHT--------------------------TCBCTT
T ss_pred CCCCcccCCcCCCeEEEec-----CCCCHhHH------HHHHHHHHHh--------------------------CCcCCC
Confidence 4579999999999998821 22221 22 3677777642 036999
Q ss_pred cccccccEEEc
Q 021835 108 CRGEVTGWVVA 118 (307)
Q Consensus 108 CRG~VkGWtVV 118 (307)
||..|.....+
T Consensus 50 CR~~i~~~i~i 60 (63)
T 2vje_B 50 CKKEIQLVIKV 60 (63)
T ss_dssp TCCBCCEEEEE
T ss_pred cCchhhceEEE
Confidence 99999886654
No 41
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.91 E-value=0.0018 Score=44.70 Aligned_cols=48 Identities=31% Similarity=0.612 Sum_probs=35.0
Q ss_pred CccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCC
Q 021835 27 WDDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSED 99 (307)
Q Consensus 27 WedvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~ 99 (307)
-++..||||++...+. |+|.|. -.| |..|++++-+. .
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg------------H~f-c~~Ci~~~~~~---~-------------------- 56 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG------------HVF-CSQCLRDSLKN---A-------------------- 56 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS------------CEE-EHHHHHHHHHH---C--------------------
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC------------Chh-cHHHHHHHHHc---C--------------------
Confidence 3678999999998776 677652 222 67899988753 0
Q ss_pred CCCccCcccccccc
Q 021835 100 SCRPACPLCRGEVT 113 (307)
Q Consensus 100 ~~~L~CPLCRG~Vk 113 (307)
..||+||.+|.
T Consensus 57 ---~~CP~Cr~~~~ 67 (69)
T 2ea6_A 57 ---NTCPTCRKKIN 67 (69)
T ss_dssp ---SSCTTTCCCCC
T ss_pred ---CCCCCCCCccC
Confidence 36999998874
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.87 E-value=0.0046 Score=41.55 Aligned_cols=35 Identities=20% Similarity=0.693 Sum_probs=26.0
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHH
Q 021835 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKN 74 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkk 74 (307)
-++..||||++...++|+|.| +-.| +..|+.++-+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~ 47 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIEC------------GHNF-CKACITRWWE 47 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSS------------CCCC-CHHHHHHHTT
T ss_pred ccCCCCccCCcccCccEeCCC------------CCcc-CHHHHHHHHH
Confidence 367899999999999988754 3332 4678888743
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.86 E-value=0.0087 Score=42.83 Aligned_cols=49 Identities=16% Similarity=0.429 Sum_probs=34.4
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|+|.| +-+| +..|+.++-+. ....||+
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~C------------gH~f-c~~Ci~~~~~~-------------------------~~~~CP~ 48 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVST------------GQTY-ERSSIQKWLDA-------------------------GHKTCPK 48 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETT------------TEEE-EHHHHHHHHTT-------------------------TCCBCTT
T ss_pred ccCCCCCccccccCCEEcCC------------CCee-cHHHHHHHHHH-------------------------CcCCCCC
Confidence 57899999999999999844 2222 24566666531 1257999
Q ss_pred ccccccc
Q 021835 108 CRGEVTG 114 (307)
Q Consensus 108 CRG~VkG 114 (307)
||..+..
T Consensus 49 C~~~~~~ 55 (78)
T 1t1h_A 49 SQETLLH 55 (78)
T ss_dssp TCCBCSS
T ss_pred CcCCCCh
Confidence 9998864
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.84 E-value=0.0036 Score=48.74 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.4
Q ss_pred CccccccccccCCCceeee-ec
Q 021835 27 WDDVTCPICLDFPHNGVLL-LC 47 (307)
Q Consensus 27 WedvtCpICME~PHNAVLL-lC 47 (307)
-++.+||||++...++|+| .|
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~C 41 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGC 41 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSS
T ss_pred hhCCCCCCCChHhhCccEeCCC
Confidence 3688999999999999998 55
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.83 E-value=0.0042 Score=51.21 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=37.2
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
++.+||||++...++|.|.| +-+| +..|+.++-+. ....||+
T Consensus 77 ~~~~C~IC~~~~~~pv~~~C------------gH~f-C~~Ci~~~~~~-------------------------~~~~CP~ 118 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTEC------------FHNV-CKDCLQRSFKA-------------------------QVFSCPA 118 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTT------------SCEE-EHHHHHHHHHT-------------------------TCCBCTT
T ss_pred cCCEeecCChhhcCCEEcCC------------CCch-hHHHHHHHHHh-------------------------CCCcCCC
Confidence 56799999999999999754 3223 35788887763 1157999
Q ss_pred cccccccE
Q 021835 108 CRGEVTGW 115 (307)
Q Consensus 108 CRG~VkGW 115 (307)
||..+...
T Consensus 119 Cr~~~~~~ 126 (150)
T 1z6u_A 119 CRHDLGQN 126 (150)
T ss_dssp TCCBCCTT
T ss_pred CCccCCCC
Confidence 99998754
No 46
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=95.82 E-value=0.0023 Score=44.72 Aligned_cols=50 Identities=30% Similarity=0.564 Sum_probs=36.5
Q ss_pred CCccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCC
Q 021835 26 NWDDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSE 98 (307)
Q Consensus 26 eWedvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~ 98 (307)
..++..||||++...+. |+|.|. -. -|..|++++-+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg------------H~-fc~~Ci~~~~~~~---------------------- 51 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG------------HV-FCSQCLRDSLKNA---------------------- 51 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS------------CE-EEHHHHHHHHHHC----------------------
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC------------Ch-HhHHHHHHHHHcC----------------------
Confidence 45788999999998776 676552 22 2678999886530
Q ss_pred CCCCccCccccccccc
Q 021835 99 DSCRPACPLCRGEVTG 114 (307)
Q Consensus 99 ~~~~L~CPLCRG~VkG 114 (307)
..||+||..+..
T Consensus 52 ----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 52 ----NTCPTCRKKINH 63 (71)
T ss_dssp ----SBCTTTCCBCCC
T ss_pred ----CCCCCCCCccCh
Confidence 369999998863
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.59 E-value=0.011 Score=44.28 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=10.3
Q ss_pred ccCccccccccc
Q 021835 103 PACPLCRGEVTG 114 (307)
Q Consensus 103 L~CPLCRG~VkG 114 (307)
..||+||..+..
T Consensus 51 ~~CP~CR~~~~~ 62 (78)
T 1e4u_A 51 GLCPACRKPYPE 62 (78)
T ss_dssp SBCTTTCCBCSS
T ss_pred CCCCCCCCccCC
Confidence 679999998875
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.46 E-value=0.01 Score=57.11 Aligned_cols=51 Identities=24% Similarity=0.547 Sum_probs=38.9
Q ss_pred ccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcccc
Q 021835 30 VTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPLCR 109 (307)
Q Consensus 30 vtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPLCR 109 (307)
..|+||||.+-++|++-|. -.+ +..|+.++.+. ....||+||
T Consensus 333 ~~C~ICle~~~~pv~lpCG------------H~F-C~~Ci~~wl~~-------------------------~~~~CP~CR 374 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCG------------HLM-CTSCLTSWQES-------------------------EGQGCPFCR 374 (389)
T ss_dssp SBCTTTSSSBCCEEEETTC------------CEE-CHHHHHHHHHH-------------------------TCSBCTTTC
T ss_pred CCCCccCcCCCCeEEeCCC------------Chh-hHHHHHHHHhc-------------------------CCCCCCCCC
Confidence 6899999999999998763 222 46799988763 014699999
Q ss_pred cccccEEEc
Q 021835 110 GEVTGWVVA 118 (307)
Q Consensus 110 G~VkGWtVV 118 (307)
..|..-.++
T Consensus 375 ~~i~~~~~i 383 (389)
T 2y1n_A 375 CEIKGTEPI 383 (389)
T ss_dssp CBCCEEEEC
T ss_pred CccCCceeE
Confidence 999886654
No 49
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.34 E-value=0.0052 Score=42.84 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=31.8
Q ss_pred cccccccccc-CCCce----eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCC
Q 021835 28 DDVTCPICLD-FPHNG----VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCR 102 (307)
Q Consensus 28 edvtCpICME-~PHNA----VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~ 102 (307)
++.+||||++ ..-|+ |++.| +-.| +..|++++... . .
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C------------gH~f-C~~Ci~~~~~~---~----------------------~ 43 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC------------GHTL-CESCVDLLFVR---G----------------------A 43 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT------------CCCE-EHHHHHHHHHT---T----------------------S
T ss_pred CCCcCCcCCCCccCCCccCeecCCC------------CCHh-HHHHHHHHHHc---C----------------------C
Confidence 6789999999 44444 34433 3332 56788887542 0 1
Q ss_pred ccCccccccccc
Q 021835 103 PACPLCRGEVTG 114 (307)
Q Consensus 103 L~CPLCRG~VkG 114 (307)
..||+||..+..
T Consensus 44 ~~CP~Cr~~~~~ 55 (65)
T 1g25_A 44 GNCPECGTPLRK 55 (65)
T ss_dssp SSCTTTCCCCSS
T ss_pred CcCCCCCCcccc
Confidence 469999998864
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.22 E-value=0.011 Score=41.95 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=32.4
Q ss_pred ccccccccccCCCce---eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCcc
Q 021835 28 DDVTCPICLDFPHNG---VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (307)
Q Consensus 28 edvtCpICME~PHNA---VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~ 104 (307)
++..|+||++...+. ++|. |+-. =|..|++++-+.. ..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~------------C~H~-f~~~Ci~~~~~~~--------------------------~~ 54 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP------------CKHA-FHRKCLIKWLEVR--------------------------KV 54 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET------------TTEE-EEHHHHHHHHHHC--------------------------SB
T ss_pred CCCCCcCCCcccCCCCcEEEcC------------CCCE-ecHHHHHHHHHcC--------------------------Cc
Confidence 467899999985443 3333 3322 2678999987541 25
Q ss_pred Cccccccccc
Q 021835 105 CPLCRGEVTG 114 (307)
Q Consensus 105 CPLCRG~VkG 114 (307)
||+||.+|..
T Consensus 55 CP~Cr~~~~~ 64 (74)
T 2ep4_A 55 CPLCNMPVLQ 64 (74)
T ss_dssp CTTTCCBCSS
T ss_pred CCCcCccccc
Confidence 9999998865
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.12 E-value=0.013 Score=43.96 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=33.0
Q ss_pred CccccccccccCCCc---eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCc
Q 021835 27 WDDVTCPICLDFPHN---GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRP 103 (307)
Q Consensus 27 WedvtCpICME~PHN---AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L 103 (307)
-++..|+|||+...+ .+.|.| +-. =|..|++++-+. ..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C------------~H~-Fh~~Ci~~wl~~--------------------------~~ 78 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPC------------HHY-FHKPCVSIWLQK--------------------------SG 78 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETT------------TEE-EEHHHHHHHHTT--------------------------TC
T ss_pred CCCCCCcccChhhcCCCcEEecCC------------CCh-HHHHHHHHHHHc--------------------------CC
Confidence 467899999987665 555544 322 367899988532 02
Q ss_pred cCcccccccc
Q 021835 104 ACPLCRGEVT 113 (307)
Q Consensus 104 ~CPLCRG~Vk 113 (307)
.||+||.+|.
T Consensus 79 ~CP~Cr~~~~ 88 (91)
T 2l0b_A 79 TCPVCRCMFP 88 (91)
T ss_dssp BCTTTCCBSS
T ss_pred cCcCcCccCC
Confidence 6999998874
No 52
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.67 E-value=0.018 Score=41.12 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=32.3
Q ss_pred ccccccccccCCCc---eeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCcc
Q 021835 28 DDVTCPICLDFPHN---GVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (307)
Q Consensus 28 edvtCpICME~PHN---AVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~ 104 (307)
++..|+||++.-.+ .++|. |+-.| |..|+.++-+. ...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~------------C~H~f-c~~Ci~~~~~~--------------------------~~~ 54 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP------------CNHLF-HDSCIVPWLEQ--------------------------HDS 54 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT------------TSCEE-ETTTTHHHHTT--------------------------TCS
T ss_pred CCCCCeeCCccccCCCCEEEeC------------CCCee-cHHHHHHHHHc--------------------------CCc
Confidence 56789999876543 34444 33322 67899888531 036
Q ss_pred CcccccccccE
Q 021835 105 CPLCRGEVTGW 115 (307)
Q Consensus 105 CPLCRG~VkGW 115 (307)
||+||.+|..-
T Consensus 55 CP~Cr~~~~~~ 65 (78)
T 2ect_A 55 CPVCRKSLTGQ 65 (78)
T ss_dssp CTTTCCCCCCS
T ss_pred CcCcCCccCCc
Confidence 99999998763
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.024 Score=41.78 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.1
Q ss_pred ccccccccccCCCc
Q 021835 28 DDVTCPICLDFPHN 41 (307)
Q Consensus 28 edvtCpICME~PHN 41 (307)
++.+|+|||+.=.+
T Consensus 14 ~~~~C~IC~~~~~~ 27 (81)
T 2ecl_A 14 ECDTCAICRVQVMD 27 (81)
T ss_dssp CCSCBTTTTBCTTS
T ss_pred CCCCCcccChhhhc
Confidence 57889999987654
No 54
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.85 E-value=0.034 Score=38.31 Aligned_cols=36 Identities=28% Similarity=0.711 Sum_probs=27.6
Q ss_pred CccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021835 27 WDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (307)
-++.+||||++...++|+|.| +-.| +..|+.++.+.
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~C------------gH~f-C~~Ci~~~~~~ 53 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDC------------GHNF-CLKCITQIGET 53 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTT------------SSEE-CHHHHHHHHHH
T ss_pred ccCCCCCcCCchhCCeEEeCC------------CCcc-hHHHHHHHHHc
Confidence 367899999999999999854 2222 45799888774
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.76 E-value=0.021 Score=43.51 Aligned_cols=47 Identities=32% Similarity=0.663 Sum_probs=34.3
Q ss_pred ccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCC
Q 021835 28 DDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDS 100 (307)
Q Consensus 28 edvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~ 100 (307)
++..||||++...+. |++.|. -.-|.+|++++-+.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-------------H~fc~~Ci~~~~~~------------------------- 112 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECG-------------HVFCSQCLRDSLKN------------------------- 112 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTS-------------BEEEHHHHHHHHHH-------------------------
T ss_pred CCCCCCCCCCccccccccCcceEeCCCC-------------ChhhHHHHHHHHHc-------------------------
Confidence 567899999987664 777773 12467899888754
Q ss_pred CCccCcccccccc
Q 021835 101 CRPACPLCRGEVT 113 (307)
Q Consensus 101 ~~L~CPLCRG~Vk 113 (307)
...||+||..|.
T Consensus 113 -~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 113 -ANTCPTCRKKIN 124 (133)
T ss_dssp -CSBCTTTCCBCC
T ss_pred -CCCCCCCCCcCC
Confidence 137999998875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.44 E-value=0.03 Score=42.66 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=26.3
Q ss_pred CccccccccccCCCce-------eeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021835 27 WDDVTCPICLDFPHNG-------VLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (307)
Q Consensus 27 WedvtCpICME~PHNA-------VLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (307)
-++.+||||+|..-+. |+|.| +-.| |..|++++-+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C------------gH~f-c~~Ci~~~~~~ 47 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTEC------------GHVF-CSQCLRDSLKN 47 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETT------------CCEE-EHHHHHHHHTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCC------------CChh-hHHHHHHHHHh
Confidence 4678999999987665 88765 3322 67899998653
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=92.22 E-value=0.034 Score=43.06 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.9
Q ss_pred CccccccccccCCCceeeeecc
Q 021835 27 WDDVTCPICLDFPHNGVLLLCS 48 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlCS 48 (307)
=++.+||||++...+.|+|-|.
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG 41 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSS 41 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTT
T ss_pred cHhcCCcCccccccCCeECCCC
Confidence 4788999999999999999876
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=92.00 E-value=0.1 Score=41.24 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=23.5
Q ss_pred ccccccccccCCCceeeeecc-----cCCCCCccc--ccCCCCCccchHHHHHH
Q 021835 28 DDVTCPICLDFPHNGVLLLCS-----SYEKGCRPF--VCDTDHLHSNCLDRFKN 74 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCS-----Sh~KGCRPY--MCdTS~RHSNCLDQFkk 74 (307)
++.+|+||++.=....+ .|- +...+|... -|+-. =|..|++++-+
T Consensus 36 ~~d~CaIC~~~~~~~c~-~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCI-ECQANQASATSEECTVAWGVCNHA-FHFHCISRWLK 87 (106)
T ss_dssp CSCCCSSSCSCTTSCCT-THHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHT
T ss_pred CCCCCccCChhHhCcCc-hhhccccccCCccceEeecccCcE-ECHHHHHHHHH
Confidence 57799999987554311 121 112222211 14433 47889998854
No 59
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.22 Score=46.24 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=27.7
Q ss_pred cCccccccccCCccccccccccCCCceeee-ec
Q 021835 16 CDMEDVQLNTNWDDVTCPICLDFPHNGVLL-LC 47 (307)
Q Consensus 16 ~~~ed~~l~keWedvtCpICME~PHNAVLL-lC 47 (307)
.+-+|+......++.+||||++...+.|.+ .|
T Consensus 168 ~dDDDI~v~~~~~el~CPIcl~~f~DPVts~~C 200 (267)
T 3htk_C 168 ADEDDLQIEGGKIELTCPITCKPYEAPLISRKC 200 (267)
T ss_dssp TCSSCCCCCSSBCCSBCTTTSSBCSSEEEESSS
T ss_pred CCCccceecCCceeeECcCccCcccCCeeeCCC
Confidence 344699999999999999999999999986 44
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.62 E-value=0.14 Score=36.71 Aligned_cols=51 Identities=25% Similarity=0.523 Sum_probs=35.6
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCC--CCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccC
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDT--DHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPAC 105 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdT--S~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~C 105 (307)
+...|.||++-..+.+++-| .|.. .|-|..||++..+..+ +..|
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC----------~C~gs~~~~H~~Cl~~W~~~~~------------------------~~~C 50 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRAC----------GCTGELENVHRSCLSTWLTISR------------------------NTAC 50 (60)
T ss_dssp SCCEETTTTEECSCCCCCSC----------CCSSGGGSCCHHHHHHHHHHHT------------------------CSBC
T ss_pred CCCEeEEeecCCCCceecCc----------CCCCchhhhHHHHHHHHHHhCC------------------------CCcc
Confidence 46789999987766543333 2322 3789999999987532 2579
Q ss_pred ccccccc
Q 021835 106 PLCRGEV 112 (307)
Q Consensus 106 PLCRG~V 112 (307)
|||+-+.
T Consensus 51 ~~C~~~~ 57 (60)
T 1vyx_A 51 QICGVVY 57 (60)
T ss_dssp TTTCCBC
T ss_pred CCCCCee
Confidence 9999764
No 61
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=89.49 E-value=0.075 Score=39.77 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.3
Q ss_pred CCccccccccccCCCceeeeec
Q 021835 26 NWDDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 26 eWedvtCpICME~PHNAVLLlC 47 (307)
-=++.+||||++...+.|++-|
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~c 32 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPS 32 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTT
T ss_pred CchheECcccCchhcCCeECCC
Confidence 3478999999999999999865
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=87.88 E-value=0.17 Score=39.19 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.9
Q ss_pred CccccccccccCCCceeeeec
Q 021835 27 WDDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlC 47 (307)
=++.+||||++...+.|++-|
T Consensus 27 p~~~~CpI~~~~m~dPV~~~c 47 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPS 47 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETT
T ss_pred cHhhCCcCccCcccCCeECCC
Confidence 378899999999999999875
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.32 E-value=0.3 Score=36.89 Aligned_cols=34 Identities=24% Similarity=0.713 Sum_probs=23.5
Q ss_pred ccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021835 30 VTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (307)
Q Consensus 30 vtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (307)
..|.||.+.=+.. +-|. .|+..+ |..|+++|-+.
T Consensus 16 ~~C~IC~~~i~~g---------~~C~--~C~h~f-H~~Ci~kWl~~ 49 (74)
T 2ct0_A 16 KICNICHSLLIQG---------QSCE--TCGIRM-HLPCVAKYFQS 49 (74)
T ss_dssp CBCSSSCCBCSSS---------EECS--SSCCEE-CHHHHHHHSTT
T ss_pred CcCcchhhHcccC---------CccC--CCCchh-hHHHHHHHHHh
Confidence 6899999876643 3344 554433 89999999653
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=82.78 E-value=0.35 Score=40.97 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=18.6
Q ss_pred CccccccccccCCCceeeeec
Q 021835 27 WDDVTCPICLDFPHNGVLLLC 47 (307)
Q Consensus 27 WedvtCpICME~PHNAVLLlC 47 (307)
-++.+||||++...+.|.+.|
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~ 226 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPS 226 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSS
T ss_pred CcccCCcCcCCHhcCCeECCC
Confidence 367899999999999999865
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=82.59 E-value=1.3 Score=43.10 Aligned_cols=69 Identities=17% Similarity=0.471 Sum_probs=41.8
Q ss_pred cCCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCcc
Q 021835 25 TNWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPA 104 (307)
Q Consensus 25 keWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~ 104 (307)
++=....|+||++.=+.. -.--+|-|.-=-|+- .=|+.||.+.-++...+..+ -+...-.
T Consensus 304 ~ee~~~ECaICys~~l~~----g~lPdk~C~n~~C~h-~FH~~CL~kWLrs~~~sRqS---------------Fnvi~G~ 363 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDG----GEVPLVSCDNAKCVL-KCHAVCLEEWFKTLMDGKTF---------------LEVSFGQ 363 (381)
T ss_dssp CCCSCCSCSSSCCSSCTT----CCCCCBCCSCTTCCC-CBCSGGGHHHHHHHHSSSCT---------------TTCCEEE
T ss_pred cccCCccCcccceeecCC----CCCccccccCCccCC-ccchHHHHHHHHhCCCcccc---------------ccccCCC
Confidence 344567899999986541 111223333333433 34899999988775543211 1345578
Q ss_pred Ccccccccc
Q 021835 105 CPLCRGEVT 113 (307)
Q Consensus 105 CPLCRG~Vk 113 (307)
||+||.+|.
T Consensus 364 CPyCr~pIs 372 (381)
T 3k1l_B 364 CPFCKAKLS 372 (381)
T ss_dssp CTTTCCEEE
T ss_pred CCCCCCcCC
Confidence 999998764
No 66
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=80.64 E-value=0.42 Score=40.99 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=23.2
Q ss_pred ccCcCcc--cCccccccHHHHHHhhhhhCCC
Q 021835 128 KKRCCEE--DQCTFAGTYLELRKHAQLEHPH 156 (307)
Q Consensus 128 K~RsC~~--e~CsF~GtY~eLrKHar~~HP~ 156 (307)
++-+|.. ..|+|+|+|++|-.|.+..|..
T Consensus 35 ~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~ 65 (193)
T 2a25_A 35 RPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 65 (193)
T ss_dssp -CEECCCC--CCCCEECSTTHHHHHHHHCTT
T ss_pred CCccCCCCCCCCcCCCCHHHHHHHHHHHCCC
Confidence 3445665 5699999999999999999985
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=79.43 E-value=0.4 Score=38.85 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=1.0
Q ss_pred ccccccccccCCCc
Q 021835 28 DDVTCPICLDFPHN 41 (307)
Q Consensus 28 edvtCpICME~PHN 41 (307)
++.+|+|||+.=.+
T Consensus 47 ~~d~CaICl~~~~~ 60 (117)
T 4a0k_B 47 VVDNCAICRNHIMD 60 (117)
T ss_dssp CC------------
T ss_pred CCCcCeECChhhcC
Confidence 45699999986443
No 68
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=79.43 E-value=1.1 Score=30.00 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=17.0
Q ss_pred cccccHHHHHHhhhhhCCCC
Q 021835 138 TFAGTYLELRKHAQLEHPHS 157 (307)
Q Consensus 138 sF~GtY~eLrKHar~~HP~a 157 (307)
..-+++.+|..|...+|+..
T Consensus 13 ~~l~s~~~L~~Hye~~H~~~ 32 (34)
T 3mjh_B 13 KSLGSADELFKHYEAVHDAG 32 (34)
T ss_dssp CEESSHHHHHHHHHHHTSSS
T ss_pred HHcCCHHHHHHHHHhccccC
Confidence 34589999999999999864
No 69
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.31 E-value=1.3 Score=33.41 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=26.1
Q ss_pred ccccccccccCCCceeeee-cccCCCCCcccccCCCCCccchHHHHHHhh
Q 021835 28 DDVTCPICLDFPHNGVLLL-CSSYEKGCRPFVCDTDHLHSNCLDRFKNAY 76 (307)
Q Consensus 28 edvtCpICME~PHNAVLLl-CSSh~KGCRPYMCdTS~RHSNCLDQFkka~ 76 (307)
++.+||||++...+.|.+. | +-+|- -.|+.+|-+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~c------------Gh~f~-r~cI~~~l~~~ 42 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVC------------GHTYE-EDAIVRMIESR 42 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSS------------CCEEE-HHHHHHHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCC------------CCeec-HHHHHHHHHHc
Confidence 5688999999999999984 5 22222 35777777654
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.26 E-value=1.8 Score=32.14 Aligned_cols=56 Identities=18% Similarity=0.408 Sum_probs=32.3
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
+..+||||+|.--..+++.-. +|-=.-| ..|+.+|-+...... ....+.||.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~----~CgH~FC------~~Cl~~~~~~~i~~g------------------~~~~i~CP~ 55 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIA----QCQCIFC------TLCLKQYVELLIKEG------------------LETAISCPD 55 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEET----TTTEEEE------HHHHHHHHHHHHHHC------------------SCCCEECSC
T ss_pred CCcCCcccCcccccccceEcC----CCCCccc------HHHHHHHHHHHhhcC------------------CcccccCcc
Confidence 567999999875554443210 2221222 368888877632110 113478999
Q ss_pred --cccc
Q 021835 108 --CRGE 111 (307)
Q Consensus 108 --CRG~ 111 (307)
|+..
T Consensus 56 ~~C~~~ 61 (94)
T 1wim_A 56 AACPKQ 61 (94)
T ss_dssp TTCSSC
T ss_pred ccCCCC
Confidence 9976
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=71.08 E-value=1.3 Score=33.10 Aligned_cols=33 Identities=24% Similarity=0.618 Sum_probs=23.4
Q ss_pred cccccccccc-CCCceee--eecccCCCCCcccccCCCCCccchHHHHH
Q 021835 28 DDVTCPICLD-FPHNGVL--LLCSSYEKGCRPFVCDTDHLHSNCLDRFK 73 (307)
Q Consensus 28 edvtCpICME-~PHNAVL--LlCSSh~KGCRPYMCdTS~RHSNCLDQFk 73 (307)
|+++|+||++ ++..||. |.| ..+.| .+|+.++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C-------~~~~C------~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTC-------EVSYC------DECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTT-------TEEEC------HHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcC-------ChHHh------HHHCHHHh
Confidence 6799999996 5889997 655 44455 35777643
No 72
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=58.67 E-value=3.5 Score=35.65 Aligned_cols=35 Identities=6% Similarity=0.036 Sum_probs=25.8
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (307)
++.+||||++...+.|++-| +.+|-. .|+.++-+.
T Consensus 105 ~~f~CPI~~elm~DPV~~~~------------Ghtfer-~~I~~~l~~ 139 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPS------------GITYDR-KDIEEHLQR 139 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTT------------SCEEEH-HHHHHHHHH
T ss_pred HhhcccCccccCCCCeECCC------------CCEECH-HHHHHHHHh
Confidence 78899999999999999954 333333 466666654
No 73
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=58.66 E-value=5.2 Score=30.23 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=15.1
Q ss_pred ccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCC
Q 021835 126 NEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRP 159 (307)
Q Consensus 126 N~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP 159 (307)
+.|+-.|..+.|... .+...|++|++..|...+|
T Consensus 94 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~ 128 (155)
T 2gli_A 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128 (155)
T ss_dssp TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence 344444444444432 2334455555444544443
No 74
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.53 E-value=4.5 Score=30.52 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=33.5
Q ss_pred ccccCccccccccCC--ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHH
Q 021835 13 LIACDMEDVQLNTNW--DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (307)
Q Consensus 13 ~~~~~~ed~~l~keW--edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (307)
++.+.-.+=+.+..| .+-.|.||....+..-||+|- -|+..| |-.||+
T Consensus 8 ~~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~~ll~CD---------~C~~~y-H~~Cl~ 57 (77)
T 2e6s_A 8 RNDTECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCD---------ECNVAY-HIYCLN 57 (77)
T ss_dssp CCCCCCTTTCSCSSSCCSSSSCSSSCCCCCSTTEEECS---------SSCCEE-ETTSSS
T ss_pred cCCccChhhcCCCCeECCCCCCcCcCCcCCCCCEEEcC---------CCCccc-cccccC
Confidence 334443344445678 455899999988888999998 456656 788875
No 75
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.04 E-value=12 Score=27.57 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=46.2
Q ss_pred CCccCcccccccccEEEc-----------chhHHhhccc-------cCcCcccCcccc--ccHHHHHHhhhhhCCCCCCC
Q 021835 101 CRPACPLCRGEVTGWVVA-----------DKVRDYLNEK-------KRCCEEDQCTFA--GTYLELRKHAQLEHPHSRPS 160 (307)
Q Consensus 101 ~~L~CPLCRG~VkGWtVV-----------e~AR~~LN~K-------~RsC~~e~CsF~--GtY~eLrKHar~~HP~arP~ 160 (307)
..+.||+|-..+.+-..+ +-.++|+..| +-.|+..+|... =+..++++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll---------- 73 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMV---------- 73 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHS----------
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHC----------
Confidence 457899999887764322 3457777764 358999999988 6677776553
Q ss_pred CCCchhHHHHHHhhhhhh
Q 021835 161 KIDPARQLDWENFQQSSE 178 (307)
Q Consensus 161 eVDP~rq~~W~~lE~ere 178 (307)
++....+|+++-.++.
T Consensus 74 --~~~~~~ky~~~~~~~~ 89 (94)
T 1wim_A 74 --AAEIMQRYKKLQFERS 89 (94)
T ss_dssp --CHHHHHHHHHHHHHSS
T ss_pred --CHHHHHHHHHHHHHhh
Confidence 5677778887665554
No 76
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=49.03 E-value=9.1 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=22.3
Q ss_pred ccCcCcccCccccc-cHHHHHHhhhhhC
Q 021835 128 KKRCCEEDQCTFAG-TYLELRKHAQLEH 154 (307)
Q Consensus 128 K~RsC~~e~CsF~G-tY~eLrKHar~~H 154 (307)
+.-.|.-++|.+.| .+.+|..|+|.+|
T Consensus 37 ~~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 37 EPLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred CCCEeeCCCCcCCCCChHHHHhhccccC
Confidence 36689999999754 4679999999998
No 77
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=45.29 E-value=20 Score=27.89 Aligned_cols=47 Identities=21% Similarity=0.459 Sum_probs=27.6
Q ss_pred chhHHhhccccCcCcccCcccccc----------HHHHHHhhhhhCCCCCCCCCCchhHHHH---HHhhhhh
Q 021835 119 DKVRDYLNEKKRCCEEDQCTFAGT----------YLELRKHAQLEHPHSRPSKIDPARQLDW---ENFQQSS 177 (307)
Q Consensus 119 e~AR~~LN~K~RsC~~e~CsF~Gt----------Y~eLrKHar~~HP~arP~eVDP~rq~~W---~~lE~er 177 (307)
+.++-...+.+.-|.. +|-|-|| |+++.+|.|.+ +.|.+| ++|++|-
T Consensus 6 ~~~~~q~pe~~~lC~n-gCGFfGnpaT~nlCSkCyrd~~~k~~q~-----------q~~~~~~~~~~~~~~~ 65 (74)
T 2c7n_A 6 ERRGIHVDQSDLLCKK-GCGYYGNPAWQGFCSKCWREEYHKARQK-----------QIQEDWELAERLQREE 65 (74)
T ss_dssp ------------CCTT-CSSSCCCGGGTTCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCcchhHHh-CCCCCCChhhcCccHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3444455667777866 9999998 88987777776 688999 5666653
No 78
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.38 E-value=12 Score=22.84 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=25.2
Q ss_pred HHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCCC
Q 021835 122 RDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPSK 161 (307)
Q Consensus 122 R~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~e 161 (307)
|.+.+.|+-.|....|... ..-..|++|++. |...+|-+
T Consensus 5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~ 44 (48)
T 2ent_A 5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSG 44 (48)
T ss_dssp CSSCCCCCEECCSSSCCCEESSHHHHHHHHTT-SCCCCSCS
T ss_pred CCcCCCCCeECCCCCCCCccCCHHHHHHHHHH-hCCCCCCC
Confidence 3445566666765556543 355789999876 87777743
No 79
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=37.20 E-value=10 Score=28.28 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=10.0
Q ss_pred CCccCccccccc
Q 021835 101 CRPACPLCRGEV 112 (307)
Q Consensus 101 ~~L~CPLCRG~V 112 (307)
.-|+||.|.|..
T Consensus 9 eiL~CP~ck~~L 20 (67)
T 2jny_A 9 EVLACPKDKGPL 20 (67)
T ss_dssp CCCBCTTTCCBC
T ss_pred HHhCCCCCCCcC
Confidence 349999999975
No 80
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.08 E-value=22 Score=23.98 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=22.4
Q ss_pred ccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCC
Q 021835 128 KKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPS 160 (307)
Q Consensus 128 K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~ 160 (307)
|+-.|. .|... .+-..|++|++..|+...|+
T Consensus 44 ~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~p~ 75 (77)
T 2ct1_A 44 AKFHCP--HCDTVIARKSDLGVHLRKQHSYSGPS 75 (77)
T ss_dssp SSEECS--SSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred CccCCC--CCCCccCCHHHHHHHHHHhCCCCCCC
Confidence 344444 36544 35678999999999999996
No 81
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=34.66 E-value=16 Score=25.76 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.1
Q ss_pred ccccccccCCCceeeee
Q 021835 30 VTCPICLDFPHNGVLLL 46 (307)
Q Consensus 30 vtCpICME~PHNAVLLl 46 (307)
..||||++...|.|++.
T Consensus 4 ~~CpIs~~~m~dPV~~~ 20 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSP 20 (61)
T ss_dssp CCCTTTCSCCSSEEEET
T ss_pred EEecCCCCCCCCCEEeC
Confidence 47999999999999884
No 82
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.80 E-value=69 Score=21.93 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=34.2
Q ss_pred CccCcccccccccEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCC
Q 021835 102 RPACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPS 160 (307)
Q Consensus 102 ~L~CPLCRG~VkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~ 160 (307)
...|+.|--...-.. +..-.+.+...|+-.|.. |... .+-..|.+|++.-|....|+
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~p~ 94 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHTGDSGPS 94 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEESSHHHHHHHHTTCCSCCCCC
T ss_pred CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHhcCCCCCC
Confidence 478999964432211 122333444566666765 5443 36679999999877766664
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.66 E-value=12 Score=25.19 Aligned_cols=31 Identities=29% Similarity=0.754 Sum_probs=24.0
Q ss_pred ccccccccCCCceeeeecccCCCCCcccccCCCCCccchHH
Q 021835 30 VTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (307)
Q Consensus 30 vtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (307)
|.|.||-..-...-||+|- .|+..| |-.||+
T Consensus 1 a~C~vC~~~~~~~~ll~Cd---------~C~~~~-H~~Cl~ 31 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCD---------ECNKAF-HLFCLR 31 (51)
T ss_dssp CCCTTTCCSSCCSCCEECT---------TTCCEE-CHHHHC
T ss_pred CCCCCCCCCCCCCCEEECC---------CCChhh-CcccCC
Confidence 5799999887777899997 356555 788886
No 84
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.34 E-value=13 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=10.4
Q ss_pred CCccCcccccccc
Q 021835 101 CRPACPLCRGEVT 113 (307)
Q Consensus 101 ~~L~CPLCRG~Vk 113 (307)
.-|+||.|.|...
T Consensus 7 ~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 7 DILVCPVTKGRLE 19 (68)
T ss_dssp CCCBCSSSCCBCE
T ss_pred hheECCCCCCcCe
Confidence 3499999999753
No 85
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.26 E-value=13 Score=27.82 Aligned_cols=12 Identities=42% Similarity=1.160 Sum_probs=10.1
Q ss_pred CccCcccccccc
Q 021835 102 RPACPLCRGEVT 113 (307)
Q Consensus 102 ~L~CPLCRG~Vk 113 (307)
-|+||.|.|...
T Consensus 8 iL~CP~ck~~L~ 19 (69)
T 2pk7_A 8 ILACPICKGPLK 19 (69)
T ss_dssp TCCCTTTCCCCE
T ss_pred heeCCCCCCcCe
Confidence 489999999864
No 86
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=33.25 E-value=13 Score=27.70 Aligned_cols=12 Identities=42% Similarity=1.126 Sum_probs=9.8
Q ss_pred CccCcccccccc
Q 021835 102 RPACPLCRGEVT 113 (307)
Q Consensus 102 ~L~CPLCRG~Vk 113 (307)
-|+||.|.|...
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2hf1_A 8 ILVCPLCKGPLV 19 (68)
T ss_dssp ECBCTTTCCBCE
T ss_pred heECCCCCCcCe
Confidence 389999999753
No 87
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=32.69 E-value=14 Score=27.79 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=10.3
Q ss_pred CCccCcccccccc
Q 021835 101 CRPACPLCRGEVT 113 (307)
Q Consensus 101 ~~L~CPLCRG~Vk 113 (307)
.-|+||.|.|...
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 3499999999753
No 88
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.47 E-value=25 Score=23.70 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=37.8
Q ss_pred CCccCcccccccccEE-EcchhHHhhc---cccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCCCC
Q 021835 101 CRPACPLCRGEVTGWV-VADKVRDYLN---EKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPSKI 162 (307)
Q Consensus 101 ~~L~CPLCRG~VkGWt-VVe~AR~~LN---~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~eV 162 (307)
....|+.|--...-.. +..--+.+.+ .|+-.|.. |... -+-..|++|++..|+..+|..-
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~ 70 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQ 70 (78)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTT--TCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCC--CCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence 4478999965433222 2223344443 56666655 6543 3457899999999999988754
No 89
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.85 E-value=21 Score=25.60 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=35.4
Q ss_pred ccCcccccccccEEEc-chhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCCCCCC
Q 021835 103 PACPLCRGEVTGWVVA-DKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHSRPSK 161 (307)
Q Consensus 103 L~CPLCRG~VkGWtVV-e~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~arP~e 161 (307)
..|+.|--...-..-. .-.+ +...|+-.|.. |... -+...|++|++..|...+|-.
T Consensus 43 ~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~ 100 (107)
T 1wjp_A 43 AVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAP 100 (107)
T ss_dssp BCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGG--GTEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred ccCCCCCCccCCHHHHHHHHH-cCCCCCccCcc--ccchhCCHHHHHHHHHHHcCCCCCCC
Confidence 6789987654432211 1222 55566666754 6554 356789999999998877753
No 90
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.75 E-value=20 Score=31.71 Aligned_cols=35 Identities=20% Similarity=0.620 Sum_probs=22.8
Q ss_pred cccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHh
Q 021835 29 DVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNA 75 (307)
Q Consensus 29 dvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka 75 (307)
--.|.||-+-=. ..+.|.- |++ .-|-.|+++|-+.
T Consensus 180 i~~C~iC~~iv~---------~g~~C~~--C~~-~~H~~C~~~~~~~ 214 (238)
T 3nw0_A 180 VKICNICHSLLI---------QGQSCET--CGI-RMHLPCVAKYFQS 214 (238)
T ss_dssp CCBCTTTCSBCS---------SCEECSS--SCC-EECHHHHHHHTTT
T ss_pred CCcCcchhhHHh---------CCcccCc--cCh-HHHHHHHHHHHHh
Confidence 346999977544 3445543 664 4588999998643
No 91
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.51 E-value=12 Score=28.55 Aligned_cols=38 Identities=18% Similarity=0.544 Sum_probs=25.1
Q ss_pred ccccCCccccccccccCCC--ceeeeecccCCCCCcccccCCCCCccchHH
Q 021835 22 QLNTNWDDVTCPICLDFPH--NGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (307)
Q Consensus 22 ~l~keWedvtCpICME~PH--NAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (307)
.+.++ ++..|.||...=. ...||+|- .|+..| |-.||+
T Consensus 10 d~~~e-~~~~C~vC~~~~~~~~~~ll~CD---------~C~~~y-H~~Cl~ 49 (88)
T 1wev_A 10 DFAME-MGLACVVCRQMTVASGNQLVECQ---------ECHNLY-HQDCHK 49 (88)
T ss_dssp CCHHH-HCCSCSSSCCCCCCTTCCEEECS---------SSCCEE-ETTTSS
T ss_pred cccCC-CCCcCCCCCCCCCCCCCceEECC---------CCCCeE-cCccCC
Confidence 33344 5788999987633 35788886 366666 777754
No 92
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=30.87 E-value=22 Score=26.29 Aligned_cols=36 Identities=31% Similarity=0.785 Sum_probs=27.6
Q ss_pred cCCccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHH
Q 021835 25 TNWDDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (307)
Q Consensus 25 keWedvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (307)
...++..|.||.+. ....-||+|- .|+..| |-.||+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD---------~C~~~~-H~~Cl~ 49 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCD---------MCNLAV-HQECYG 49 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECS---------SSCCEE-EHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC---------CCCCcc-ccccCC
Confidence 45678899999865 4677899997 466666 778875
No 93
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.60 E-value=17 Score=26.09 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.9
Q ss_pred CCccCccccccc
Q 021835 101 CRPACPLCRGEV 112 (307)
Q Consensus 101 ~~L~CPLCRG~V 112 (307)
.-|+||.|.|..
T Consensus 9 ~iL~CP~c~~~L 20 (56)
T 2kpi_A 9 EILACPACHAPL 20 (56)
T ss_dssp TSCCCSSSCSCE
T ss_pred hheeCCCCCCcc
Confidence 348999999974
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=29.38 E-value=38 Score=27.13 Aligned_cols=69 Identities=28% Similarity=0.585 Sum_probs=41.6
Q ss_pred ccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHHHHHHhhCCCCCCCCccCCccCCCCCcCCCCCCccCcc
Q 021835 28 DDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLDRFKNAYGVSPPSTSEVNSAANTQPMVSEDSCRPACPL 107 (307)
Q Consensus 28 edvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLDQFkka~~~~~~s~~~~~~~~~~~~~~~~~~~~L~CPL 107 (307)
.|..|+||--++ +-+|+- || +|.-.| |.+||.+--.--+..+- .+...+. ...--.||-
T Consensus 14 ~D~~C~VC~~~t-~~~l~p-------CR--vC~Rvf-H~~CL~r~gy~~~~~a~---e~~l~A~-------T~~GWSC~~ 72 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFP-------CR--VCTRVF-HDGCLRRMGYIQGDSAA---EVTEMAH-------TETGWSCHY 72 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSS-------CS--SSSSCC-CHHHHHHHTSCCCCCCC---SCSCCCS-------SSSSCCCTT
T ss_pred CCcccCcccccc-ccceec-------cc--cccccc-cHhhcccccccccHHHH---HHHHccC-------CCCCccccc
Confidence 688999999888 445554 44 576666 89999875433222211 1111111 234478999
Q ss_pred cccccccEEEcc
Q 021835 108 CRGEVTGWVVAD 119 (307)
Q Consensus 108 CRG~VkGWtVVe 119 (307)
| ++.||-..|
T Consensus 73 C--enL~lLLtE 82 (89)
T 1wil_A 73 C--DNINLLLTE 82 (89)
T ss_dssp T--CCCCSSSCC
T ss_pred c--chhhhhcch
Confidence 9 778876543
No 95
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=29.01 E-value=26 Score=22.28 Aligned_cols=53 Identities=26% Similarity=0.301 Sum_probs=31.7
Q ss_pred ccCcccccccccEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCC
Q 021835 103 PACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHS 157 (307)
Q Consensus 103 L~CPLCRG~VkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~a 157 (307)
..|+.|--...-.. +..-.+.+.+.|+-.|.. |... .+-..|++|++..|+..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTT--TCCEESSHHHHHHHHTTTSCCS
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHHcCCc
Confidence 46888854433221 223334455566666765 5443 35678999998889753
No 96
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=28.15 E-value=27 Score=21.81 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=31.8
Q ss_pred ccCcccccccccEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhC
Q 021835 103 PACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEH 154 (307)
Q Consensus 103 L~CPLCRG~VkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~H 154 (307)
..|+.|--...-.. +..-.+.+.+.|+-.|.. |... .+-..|.+|++..|
T Consensus 5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh 56 (57)
T 3uk3_C 5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERHH 56 (57)
T ss_dssp CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSS--SSCEESSHHHHHHHHHHHC
T ss_pred ccCCCCcchhCChHHHHHHHHHcCCCCCcCCCC--CcchhCCHHHHHHHHHHhc
Confidence 57888854433222 234455566677777765 6554 35678999998877
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.03 E-value=17 Score=25.54 Aligned_cols=35 Identities=20% Similarity=0.526 Sum_probs=24.7
Q ss_pred CCccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHH
Q 021835 26 NWDDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (307)
Q Consensus 26 eWedvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (307)
+-++..|.||-.. .-..-||+|- .|+..| |-.||+
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd---------~C~~~~-H~~C~~ 39 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICD---------KCGQGY-HQLCHT 39 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECS---------SSCCEE-ETTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC---------CCChHH-HhhhCC
Confidence 3467899999975 3447899997 356566 667764
No 98
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.44 E-value=83 Score=21.47 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=30.3
Q ss_pred CccCcccccccccEE-EcchhHHhhcc--ccCcCcccCcccc-ccHHHHHHhhhhhCCCC
Q 021835 102 RPACPLCRGEVTGWV-VADKVRDYLNE--KKRCCEEDQCTFA-GTYLELRKHAQLEHPHS 157 (307)
Q Consensus 102 ~L~CPLCRG~VkGWt-VVe~AR~~LN~--K~RsC~~e~CsF~-GtY~eLrKHar~~HP~a 157 (307)
...|+.|--...-.. +..-.+.+.+. |+-.|.. |... .+-..|++|++..|+..
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~ 92 (95)
T 2yt9_A 35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHSGP 92 (95)
T ss_dssp SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBSSHHHHHHHHHHTSCCC
T ss_pred CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhCCHHHHHHHHHHhcCCC
Confidence 377888864322111 11222333333 5555644 6553 45678999999999753
No 99
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=26.83 E-value=38 Score=28.81 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCccccccccccCCCceeeeecccCCCCCcccccCCCCCccchHH
Q 021835 26 NWDDVTCPICLDFPHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (307)
Q Consensus 26 eWedvtCpICME~PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (307)
+..+-.|.||-+. . =||+|-. |+-+| |-.||+
T Consensus 4 d~~~~~C~~C~~~-g--~ll~Cd~---------C~~~~-H~~Cl~ 35 (207)
T 3u5n_A 4 DPNEDWCAVCQNG-G--DLLCCEK---------CPKVF-HLTCHV 35 (207)
T ss_dssp CSSCSSBTTTCCC-E--EEEECSS---------SSCEE-CTTTSS
T ss_pred CCCCCCCCCCCCC-C--ceEEcCC---------CCCcc-CCccCC
Confidence 3455679999843 3 3888874 55444 556874
No 100
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=26.12 E-value=19 Score=28.74 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=10.7
Q ss_pred CccCccccccccc
Q 021835 102 RPACPLCRGEVTG 114 (307)
Q Consensus 102 ~L~CPLCRG~VkG 114 (307)
-|+||.|+|++.-
T Consensus 8 ILaCP~cK~pL~l 20 (97)
T 2k5r_A 8 LLCSPDTRQPLSL 20 (97)
T ss_dssp SCCCCTTSSCCEE
T ss_pred heECCCCCCcccc
Confidence 4899999997753
No 101
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.57 E-value=48 Score=19.86 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=22.4
Q ss_pred hccccCcCcccCccccccHHHHHHhhhhhCCCCCCCC
Q 021835 125 LNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPSK 161 (307)
Q Consensus 125 LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~arP~e 161 (307)
...|+-.|..=+=.|. +-..|++|++..|...+|-.
T Consensus 8 ~~~k~~~C~~C~k~F~-~~~~L~~H~~~~H~~~k~~~ 43 (47)
T 2epx_A 8 TGKKPYECIECGKAFI-QNTSLIRHWRYYHTGEKPSG 43 (47)
T ss_dssp CCCCSBCCSSSCCCBS-SHHHHHHHHTTTTTTSCSSS
T ss_pred CCCCCEECCccCchhC-ChHHHHHHhHhhcCCCCCCC
Confidence 3455555654222333 45789999997788887743
No 102
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=24.59 E-value=53 Score=24.71 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=7.0
Q ss_pred CCCCccCcccc
Q 021835 99 DSCRPACPLCR 109 (307)
Q Consensus 99 ~~~~L~CPLCR 109 (307)
......|+.|-
T Consensus 22 ~~~~~~C~~C~ 32 (155)
T 2rpc_A 22 AQLSRPKKSCD 32 (155)
T ss_dssp TCCSSSCCCCC
T ss_pred hhcccccccCC
Confidence 45557777773
No 103
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=24.24 E-value=49 Score=26.08 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=30.7
Q ss_pred CCCCCCccCcccccccccEEEcchhHHhhccccCcCcccCccccccHHHHHHhhhhhCCCCCCCCCCc
Q 021835 97 SEDSCRPACPLCRGEVTGWVVADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPSKIDP 164 (307)
Q Consensus 97 ~~~~~~L~CPLCRG~VkGWtVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~arP~eVDP 164 (307)
........||.||... | -+-+...|.-|+..+||-..+.+-=|
T Consensus 40 n~~A~~i~C~VCr~tF------------m-------------~t~~~~~L~~H~e~KHpK~~~~eCFP 82 (86)
T 1wvk_A 40 NKKAMSIQCKVCMQTF------------I-------------CTTSEVKCREHAEAKHPKADVVACFP 82 (86)
T ss_dssp CCTTCCEEETTTTEEE------------C-------------CSSCSHHHHHHHHTCCSCCGGGTTSG
T ss_pred HHHhhCCCChHhHhhH------------H-------------hcCChHHHHHHHHcCCCCCCHHHHCc
Confidence 3467789999999643 0 12357899999999999876655433
No 104
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.92 E-value=42 Score=21.31 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=19.7
Q ss_pred ccccCcCcccCcccc-ccHHHHHHhhhh
Q 021835 126 NEKKRCCEEDQCTFA-GTYLELRKHAQL 152 (307)
Q Consensus 126 N~K~RsC~~e~CsF~-GtY~eLrKHar~ 152 (307)
++|+-.|.++.|... -.-..|++|+|.
T Consensus 6 gekp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 467788988778754 245689999875
No 105
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.65 E-value=87 Score=22.23 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCccCcccccccccEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhh
Q 021835 101 CRPACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLE 153 (307)
Q Consensus 101 ~~L~CPLCRG~VkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~ 153 (307)
....||.|--...-.. +..--+.+.+.|+-.|.. |... .+...|.+|.+..
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~ 58 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARN 58 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT--TCCBCSSHHHHHHHHHHC
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC--CCchhcCHHHHHHHHhhh
Confidence 4467888754433222 122233444555555644 5433 3567788887764
No 106
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.33 E-value=9 Score=27.20 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=36.9
Q ss_pred CCCccCcccccccccEEEcchhHHhhccccCcCcccCccccccHHHHHHhhhhhCCCCC
Q 021835 100 SCRPACPLCRGEVTGWVVADKVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSR 158 (307)
Q Consensus 100 ~~~L~CPLCRG~VkGWtVVe~AR~~LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~ar 158 (307)
.....|+.|-..|....+.+-. ..-..|+-.|.. |...-...+|..|.+ .||.+.
T Consensus 15 ~r~~~C~~C~~~~~~~~L~~H~-~~c~~~~~~C~~--C~~~~~~~~l~~H~~-~c~~~~ 69 (75)
T 2d9k_A 15 LRLAVCQHCDLELSILKLKEHE-DYCGARTELCGN--CGRNVLVKDLKTHPE-VCGREG 69 (75)
T ss_dssp CCCEECSSSCCEECHHHHHHHH-HHHHHCEEECSS--SCCEEETTGGGTHHH-HBTTBS
T ss_pred CcccCCcccChHhhHHHHHHHH-hHcCCCceEccc--CCCcCcHHHHHHHHH-HccCCc
Confidence 3457899997777422222222 334467777875 887777899999986 488764
No 107
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=21.60 E-value=87 Score=23.78 Aligned_cols=33 Identities=33% Similarity=0.950 Sum_probs=25.8
Q ss_pred ccccccccccC--CCceeeeecccCCCCCcccccCCCCCccchHH
Q 021835 28 DDVTCPICLDF--PHNGVLLLCSSYEKGCRPFVCDTDHLHSNCLD 70 (307)
Q Consensus 28 edvtCpICME~--PHNAVLLlCSSh~KGCRPYMCdTS~RHSNCLD 70 (307)
++..|.||.+. .....||+|- .|+..| |-.|+.
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD---------~C~~~f-H~~Cl~ 58 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCD---------MCNLAV-HQECYG 58 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECS---------SSCCCC-CHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECC---------CCCchh-hcccCC
Confidence 57899999975 4777999998 367776 678876
No 108
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.68 E-value=48 Score=23.56 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=28.7
Q ss_pred CccCcccccccccEE-EcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCC
Q 021835 102 RPACPLCRGEVTGWV-VADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHP 155 (307)
Q Consensus 102 ~L~CPLCRG~VkGWt-VVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP 155 (307)
...|+.|--...-.. +..-.+.+.+.|+-.|.. |... -+-..|++|++.-|+
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ 90 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHVTSCTK 90 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSS--SCCEESCHHHHHHHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCC--CcchhcCHHHHHHHHHHccc
Confidence 378999964433221 112223333445555654 5443 346789999987665
No 109
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.41 E-value=1.1e+02 Score=22.45 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=36.2
Q ss_pred CCccCcccccccccE-EEcchhHHhhccccCcCcccCcccc-ccHHHHHHhhhhhCCCC
Q 021835 101 CRPACPLCRGEVTGW-VVADKVRDYLNEKKRCCEEDQCTFA-GTYLELRKHAQLEHPHS 157 (307)
Q Consensus 101 ~~L~CPLCRG~VkGW-tVVe~AR~~LN~K~RsC~~e~CsF~-GtY~eLrKHar~~HP~a 157 (307)
..-.||.|--.-.-- .+..-.|.+-..|+-.|.. |.-. -+-..|++|++..||..
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~E 83 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKY--CPATFYSSPGLTRHINKCHPSE 83 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTT--SSCEESSHHHHHHHHHTTCTTC
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCC--CCCEeCCHHHHHHhCcccCcCC
Confidence 346899996432221 1334455666778877755 6543 46789999999999864
No 110
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.25 E-value=83 Score=24.15 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=28.2
Q ss_pred hccccCcCcccCccccc-cHHHHHHhhhhhCCCCCCC
Q 021835 125 LNEKKRCCEEDQCTFAG-TYLELRKHAQLEHPHSRPS 160 (307)
Q Consensus 125 LN~K~RsC~~e~CsF~G-tY~eLrKHar~~HP~arP~ 160 (307)
=-+|+=.|.++.|...= .-..|.+|+|..|-..+|-
T Consensus 23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~ 59 (73)
T 1x3c_A 23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPA 59 (73)
T ss_dssp CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCC
T ss_pred cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCc
Confidence 34688889988886543 4568999999889998884
No 111
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.12 E-value=74 Score=18.47 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred hccccCcCcccCccccccHHHHHHhhhhhCCCCCCC
Q 021835 125 LNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPS 160 (307)
Q Consensus 125 LN~K~RsC~~e~CsF~GtY~eLrKHar~~HP~arP~ 160 (307)
.+.|+-.|..=+=.|. +-..|++|++. |...+|-
T Consensus 6 ~~~k~~~C~~C~k~f~-~~~~L~~H~~~-H~~~~~~ 39 (42)
T 2yte_A 6 SGEKPYSCAECKETFS-DNNRLVQHQKM-HTVKSGP 39 (42)
T ss_dssp CSCCSCBCTTTCCBCS-SHHHHHHHHHH-TSCCSSC
T ss_pred CCCCCeECCCCCCccC-CHHHHHHHHHH-hCCCCCC
Confidence 3455555544222333 45789999875 8777764
Done!