Query 021836
Match_columns 307
No_of_seqs 390 out of 2785
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 1.7E-30 3.7E-35 225.8 8.3 173 102-305 2-175 (218)
2 PF01209 Ubie_methyltran: ubiE 99.8 6.5E-19 1.4E-23 157.7 7.8 112 156-298 46-159 (233)
3 COG2226 UbiE Methylase involve 99.8 2.7E-18 5.9E-23 153.0 11.4 110 157-297 51-161 (238)
4 PLN02396 hexaprenyldihydroxybe 99.7 9.2E-17 2E-21 150.0 14.2 106 157-293 131-236 (322)
5 PLN02233 ubiquinone biosynthes 99.7 1.3E-16 2.7E-21 145.4 12.4 115 156-298 72-188 (261)
6 PF08241 Methyltransf_11: Meth 99.7 1.4E-16 3E-21 121.1 10.5 95 162-290 1-95 (95)
7 KOG1270 Methyltransferases [Co 99.7 1.4E-16 3.1E-21 141.3 9.9 107 158-293 90-196 (282)
8 PF12847 Methyltransf_18: Meth 99.7 3.3E-16 7.1E-21 123.5 10.4 109 157-293 1-112 (112)
9 PLN02244 tocopherol O-methyltr 99.7 7.7E-16 1.7E-20 145.4 14.1 109 156-294 117-225 (340)
10 PTZ00098 phosphoethanolamine N 99.7 1.3E-15 2.8E-20 138.9 14.7 129 129-296 32-160 (263)
11 COG2227 UbiG 2-polyprenyl-3-me 99.7 4.8E-16 1E-20 137.0 9.8 104 157-293 59-162 (243)
12 PRK15451 tRNA cmo(5)U34 methyl 99.6 2.9E-15 6.2E-20 135.4 14.2 112 157-298 56-170 (247)
13 PRK11207 tellurite resistance 99.6 2E-15 4.4E-20 131.8 12.4 107 157-294 30-136 (197)
14 PF13847 Methyltransf_31: Meth 99.6 2.9E-15 6.3E-20 125.2 10.9 106 157-294 3-112 (152)
15 TIGR00740 methyltransferase, p 99.6 9.1E-15 2E-19 131.3 12.6 111 157-297 53-166 (239)
16 TIGR00477 tehB tellurite resis 99.6 6.9E-15 1.5E-19 128.3 11.4 105 157-293 30-134 (195)
17 TIGR02752 MenG_heptapren 2-hep 99.6 5.5E-15 1.2E-19 131.7 10.7 110 156-296 44-155 (231)
18 PRK14103 trans-aconitate 2-met 99.6 6.9E-15 1.5E-19 133.3 11.5 96 157-291 29-125 (255)
19 PRK11036 putative S-adenosyl-L 99.6 4.3E-15 9.2E-20 134.8 9.8 105 157-292 44-149 (255)
20 KOG3178 Hydroxyindole-O-methyl 99.6 1.9E-14 4E-19 133.1 14.0 165 100-301 114-284 (342)
21 PRK09489 rsmC 16S ribosomal RN 99.6 4.4E-14 9.5E-19 133.3 16.2 211 35-293 76-304 (342)
22 PF13649 Methyltransf_25: Meth 99.6 2.4E-15 5.2E-20 117.1 6.2 96 161-286 1-101 (101)
23 KOG1540 Ubiquinone biosynthesi 99.6 1.1E-14 2.3E-19 128.9 10.8 112 155-294 98-216 (296)
24 smart00138 MeTrc Methyltransfe 99.6 1.8E-14 3.9E-19 131.4 11.9 133 156-293 98-243 (264)
25 PF08242 Methyltransf_12: Meth 99.6 2.3E-16 5.1E-21 122.1 -0.6 98 162-288 1-99 (99)
26 PRK10258 biotin biosynthesis p 99.6 1.4E-14 3.1E-19 130.8 10.5 100 157-293 42-141 (251)
27 PF02353 CMAS: Mycolic acid cy 99.6 3.2E-14 7E-19 130.2 12.8 111 155-296 60-170 (273)
28 COG2230 Cfa Cyclopropane fatty 99.6 4.1E-14 8.9E-19 128.6 13.3 112 155-297 70-181 (283)
29 PF13489 Methyltransf_23: Meth 99.6 3.3E-14 7.2E-19 118.6 10.8 111 137-295 8-118 (161)
30 PRK05785 hypothetical protein; 99.5 5.9E-14 1.3E-18 125.2 12.6 90 157-285 51-140 (226)
31 TIGR02072 BioC biotin biosynth 99.5 6.8E-14 1.5E-18 124.3 12.8 102 157-293 34-136 (240)
32 PLN02336 phosphoethanolamine N 99.5 8.1E-14 1.8E-18 137.2 14.6 108 157-296 266-373 (475)
33 PRK01683 trans-aconitate 2-met 99.5 7.4E-14 1.6E-18 126.6 13.0 99 156-291 30-129 (258)
34 PRK12335 tellurite resistance 99.5 5.1E-14 1.1E-18 129.9 11.4 104 158-293 121-224 (287)
35 PF03848 TehB: Tellurite resis 99.5 5.7E-14 1.2E-18 121.6 10.6 105 157-293 30-134 (192)
36 PRK15068 tRNA mo(5)U34 methylt 99.5 6.7E-14 1.5E-18 131.2 11.4 106 157-293 122-227 (322)
37 TIGR03587 Pse_Me-ase pseudamin 99.5 3.9E-13 8.5E-18 118.1 14.8 103 157-296 43-146 (204)
38 PF05401 NodS: Nodulation prot 99.5 1.5E-13 3.3E-18 118.2 11.2 104 157-293 43-147 (201)
39 smart00828 PKS_MT Methyltransf 99.5 1.5E-13 3.3E-18 121.8 11.5 104 160-294 2-106 (224)
40 TIGR00452 methyltransferase, p 99.5 1.1E-13 2.4E-18 128.9 11.1 107 157-294 121-227 (314)
41 PRK11873 arsM arsenite S-adeno 99.5 1.5E-13 3.3E-18 125.6 11.8 109 156-295 76-186 (272)
42 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.8E-13 8.3E-18 126.3 14.8 105 157-295 113-218 (340)
43 PRK00107 gidB 16S rRNA methylt 99.5 2.5E-13 5.4E-18 117.7 12.5 101 157-293 45-146 (187)
44 PLN02336 phosphoethanolamine N 99.5 3.8E-13 8.1E-18 132.4 13.4 111 157-297 37-147 (475)
45 TIGR03840 TMPT_Se_Te thiopurin 99.5 4.1E-13 8.9E-18 118.7 12.2 118 157-291 34-151 (213)
46 COG2813 RsmC 16S RNA G1207 met 99.5 9.6E-13 2.1E-17 120.1 14.8 212 35-293 37-267 (300)
47 PRK08317 hypothetical protein; 99.5 4.7E-13 1E-17 118.7 12.2 106 156-293 18-125 (241)
48 PRK06922 hypothetical protein; 99.5 4.7E-13 1E-17 133.5 12.8 110 157-296 418-541 (677)
49 PRK00216 ubiE ubiquinone/menaq 99.4 9E-13 2E-17 117.2 12.3 110 157-296 51-162 (239)
50 COG4106 Tam Trans-aconitate me 99.4 2.2E-13 4.8E-18 117.9 7.7 99 156-291 29-128 (257)
51 KOG4300 Predicted methyltransf 99.4 2E-13 4.4E-18 117.3 7.3 110 157-297 76-187 (252)
52 PRK11705 cyclopropane fatty ac 99.4 9.8E-13 2.1E-17 126.0 12.3 104 155-293 165-268 (383)
53 PF01739 CheR: CheR methyltran 99.4 3.1E-13 6.8E-18 117.8 7.8 151 138-292 12-175 (196)
54 PRK06202 hypothetical protein; 99.4 7E-13 1.5E-17 118.5 10.0 103 157-293 60-167 (232)
55 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.8E-12 3.9E-17 114.0 12.3 107 157-296 39-147 (223)
56 PF05175 MTS: Methyltransferas 99.4 1.7E-12 3.6E-17 110.8 11.5 107 157-293 31-141 (170)
57 TIGR00138 gidB 16S rRNA methyl 99.4 1.4E-12 3E-17 112.6 10.7 100 157-292 42-142 (181)
58 TIGR02716 C20_methyl_CrtF C-20 99.4 2.3E-12 4.9E-17 120.0 12.6 110 156-296 148-258 (306)
59 PRK15001 SAM-dependent 23S rib 99.4 2.4E-11 5.2E-16 115.8 19.6 109 158-293 229-341 (378)
60 COG4976 Predicted methyltransf 99.4 2.8E-13 6E-18 118.2 5.8 100 157-293 125-226 (287)
61 KOG2361 Predicted methyltransf 99.4 1.6E-12 3.4E-17 114.4 9.4 149 107-293 33-184 (264)
62 PRK00121 trmB tRNA (guanine-N( 99.4 1.3E-12 2.9E-17 114.5 8.6 107 157-292 40-156 (202)
63 TIGR02469 CbiT precorrin-6Y C5 99.4 7.7E-12 1.7E-16 99.8 12.0 102 157-291 19-121 (124)
64 PLN03075 nicotianamine synthas 99.4 4.4E-12 9.6E-17 116.5 10.9 107 157-292 123-233 (296)
65 TIGR02021 BchM-ChlM magnesium 99.4 6.4E-12 1.4E-16 111.3 11.6 103 157-291 55-157 (219)
66 PLN02585 magnesium protoporphy 99.3 6.7E-12 1.4E-16 117.1 11.8 104 157-289 144-247 (315)
67 PRK05134 bifunctional 3-demeth 99.3 6.6E-12 1.4E-16 112.0 10.8 104 157-293 48-152 (233)
68 PRK13255 thiopurine S-methyltr 99.3 1.8E-11 3.9E-16 108.6 13.1 117 157-290 37-153 (218)
69 PRK13944 protein-L-isoaspartat 99.3 9.2E-12 2E-16 109.4 10.4 101 156-292 71-173 (205)
70 TIGR00537 hemK_rel_arch HemK-r 99.3 1.5E-11 3.3E-16 105.5 11.4 107 157-296 19-144 (179)
71 PRK07580 Mg-protoporphyrin IX 99.3 1.4E-11 3E-16 109.4 11.4 102 157-290 63-164 (230)
72 TIGR00406 prmA ribosomal prote 99.3 2.4E-11 5.1E-16 112.3 12.6 102 157-293 159-260 (288)
73 TIGR03438 probable methyltrans 99.3 1.9E-11 4.1E-16 113.6 11.4 114 157-297 63-182 (301)
74 PRK10611 chemotaxis methyltran 99.3 9.5E-12 2.1E-16 114.4 9.0 136 157-292 115-262 (287)
75 PLN02781 Probable caffeoyl-CoA 99.3 2.3E-11 4.9E-16 109.2 11.2 127 139-305 57-190 (234)
76 PF08003 Methyltransf_9: Prote 99.3 2.2E-11 4.7E-16 111.3 10.6 105 157-294 115-221 (315)
77 PRK11088 rrmA 23S rRNA methylt 99.3 2.9E-11 6.3E-16 110.7 11.6 94 157-293 85-182 (272)
78 PRK08287 cobalt-precorrin-6Y C 99.3 4.6E-11 9.9E-16 103.3 12.2 100 157-292 31-131 (187)
79 COG1352 CheR Methylase of chem 99.3 2.8E-11 6E-16 110.1 10.9 149 140-293 80-242 (268)
80 TIGR01983 UbiG ubiquinone bios 99.3 3.3E-11 7.2E-16 106.6 10.9 105 157-293 45-150 (224)
81 TIGR00080 pimt protein-L-isoas 99.3 6E-11 1.3E-15 104.9 12.3 99 156-292 76-177 (215)
82 KOG3010 Methyltransferase [Gen 99.3 2.2E-11 4.9E-16 107.2 9.2 117 137-291 19-135 (261)
83 PRK13942 protein-L-isoaspartat 99.3 3.1E-11 6.7E-16 106.7 10.0 100 156-292 75-176 (212)
84 PF13659 Methyltransf_26: Meth 99.3 1.6E-11 3.6E-16 97.4 7.3 106 159-292 2-115 (117)
85 TIGR00091 tRNA (guanine-N(7)-) 99.2 2.2E-11 4.9E-16 106.0 8.7 110 157-292 16-132 (194)
86 COG2264 PrmA Ribosomal protein 99.2 9.6E-11 2.1E-15 107.5 12.1 103 157-293 162-264 (300)
87 PRK00517 prmA ribosomal protei 99.2 7.1E-11 1.5E-15 106.9 11.0 96 157-293 119-214 (250)
88 PF03291 Pox_MCEL: mRNA cappin 99.2 4.2E-11 9.1E-16 112.4 8.7 140 135-292 38-186 (331)
89 cd02440 AdoMet_MTases S-adenos 99.2 1.4E-10 3.1E-15 87.6 10.2 102 160-291 1-103 (107)
90 COG4123 Predicted O-methyltran 99.2 7.6E-11 1.6E-15 105.6 9.9 109 157-292 44-170 (248)
91 PRK00312 pcm protein-L-isoaspa 99.2 1.5E-10 3.2E-15 102.1 11.4 100 156-293 77-176 (212)
92 PRK14967 putative methyltransf 99.2 1.4E-10 3E-15 103.2 10.5 106 157-293 36-160 (223)
93 KOG1271 Methyltransferases [Ge 99.2 7.3E-11 1.6E-15 99.8 7.7 106 160-293 70-182 (227)
94 PF06325 PrmA: Ribosomal prote 99.2 1.3E-10 2.8E-15 107.3 9.9 100 157-293 161-260 (295)
95 TIGR03533 L3_gln_methyl protei 99.2 4.4E-10 9.6E-15 103.7 12.8 105 157-290 121-249 (284)
96 TIGR03534 RF_mod_PrmC protein- 99.2 5.1E-10 1.1E-14 100.6 13.0 120 138-292 73-217 (251)
97 PRK00377 cbiT cobalt-precorrin 99.1 2.1E-10 4.6E-15 100.1 9.9 104 155-290 38-143 (198)
98 COG2518 Pcm Protein-L-isoaspar 99.1 4.8E-10 1E-14 97.7 11.8 101 155-293 70-170 (209)
99 PRK07402 precorrin-6B methylas 99.1 5.5E-10 1.2E-14 97.3 12.3 104 156-293 39-143 (196)
100 PF05219 DREV: DREV methyltran 99.1 3.6E-10 7.9E-15 101.2 11.2 94 157-291 94-187 (265)
101 COG4122 Predicted O-methyltran 99.1 4.5E-10 9.7E-15 99.1 11.6 128 136-303 45-176 (219)
102 PRK00811 spermidine synthase; 99.1 2.6E-10 5.6E-15 105.1 10.5 112 157-291 76-190 (283)
103 PLN02476 O-methyltransferase 99.1 4.4E-10 9.5E-15 102.8 11.6 131 137-304 105-239 (278)
104 PF00891 Methyltransf_2: O-met 99.1 2.7E-10 5.8E-15 102.3 9.9 103 157-298 100-205 (241)
105 PRK04266 fibrillarin; Provisio 99.1 5E-10 1.1E-14 99.9 11.1 102 155-291 70-175 (226)
106 PRK13256 thiopurine S-methyltr 99.1 7.9E-10 1.7E-14 98.3 12.2 118 157-292 43-163 (226)
107 TIGR02081 metW methionine bios 99.1 3.2E-10 6.9E-15 98.6 9.5 91 157-284 13-104 (194)
108 TIGR00536 hemK_fam HemK family 99.1 7.9E-10 1.7E-14 101.9 12.5 103 159-290 116-242 (284)
109 PRK11805 N5-glutamine S-adenos 99.1 8.3E-10 1.8E-14 102.9 12.6 103 159-290 135-261 (307)
110 PF01596 Methyltransf_3: O-met 99.1 2.4E-10 5.3E-15 100.4 8.3 129 139-304 34-166 (205)
111 PRK14968 putative methyltransf 99.1 6.6E-10 1.4E-14 95.3 10.2 108 157-293 23-149 (188)
112 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.9E-09 4.1E-14 102.7 14.1 107 157-291 122-234 (390)
113 PLN02232 ubiquinone biosynthes 99.1 5.2E-10 1.1E-14 94.5 8.6 86 184-297 1-86 (160)
114 PRK11188 rrmJ 23S rRNA methylt 99.1 8.1E-10 1.8E-14 97.4 10.1 105 157-293 51-166 (209)
115 PF07021 MetW: Methionine bios 99.1 1E-09 2.2E-14 94.4 10.0 89 157-282 13-102 (193)
116 PRK14966 unknown domain/N5-glu 99.1 1.6E-09 3.5E-14 103.9 12.2 119 137-290 237-379 (423)
117 PLN02589 caffeoyl-CoA O-methyl 99.1 1.3E-09 2.9E-14 98.3 10.9 131 137-304 66-201 (247)
118 COG2242 CobL Precorrin-6B meth 99.0 1.2E-09 2.7E-14 93.3 10.0 102 155-291 32-134 (187)
119 PRK04457 spermidine synthase; 99.0 1.3E-09 2.7E-14 99.5 9.9 107 157-290 66-175 (262)
120 PRK09328 N5-glutamine S-adenos 99.0 2.5E-09 5.3E-14 97.6 11.6 105 157-291 108-237 (275)
121 TIGR01177 conserved hypothetic 99.0 1.8E-09 4E-14 101.5 10.7 108 156-293 181-295 (329)
122 PF06080 DUF938: Protein of un 99.0 4.9E-09 1.1E-13 91.3 11.7 114 160-300 28-149 (204)
123 TIGR03704 PrmC_rel_meth putati 99.0 8.3E-09 1.8E-13 93.5 13.0 104 158-292 87-216 (251)
124 TIGR00417 speE spermidine synt 99.0 3.1E-09 6.8E-14 97.3 10.3 111 157-291 72-185 (270)
125 PRK13943 protein-L-isoaspartat 99.0 5.2E-09 1.1E-13 98.0 11.4 101 156-293 79-181 (322)
126 PF01135 PCMT: Protein-L-isoas 99.0 6.6E-10 1.4E-14 97.9 5.0 101 155-293 70-173 (209)
127 smart00650 rADc Ribosomal RNA 98.9 4E-09 8.8E-14 89.7 9.3 99 157-290 13-111 (169)
128 PTZ00146 fibrillarin; Provisio 98.9 8.9E-09 1.9E-13 94.5 12.1 104 155-292 130-237 (293)
129 PRK11783 rlmL 23S rRNA m(2)G24 98.9 3.3E-09 7.2E-14 109.1 10.2 111 157-293 538-657 (702)
130 KOG1975 mRNA cap methyltransfe 98.9 1.5E-09 3.2E-14 99.3 6.5 131 135-291 99-236 (389)
131 COG2890 HemK Methylase of poly 98.9 4.9E-09 1.1E-13 96.4 10.1 101 160-291 113-237 (280)
132 PHA03411 putative methyltransf 98.9 5.9E-09 1.3E-13 94.8 10.3 100 157-291 64-182 (279)
133 PRK14901 16S rRNA methyltransf 98.9 7.2E-09 1.6E-13 101.1 11.6 110 155-293 250-385 (434)
134 PLN02366 spermidine synthase 98.9 7.6E-09 1.7E-13 96.3 11.2 110 157-290 91-204 (308)
135 PRK01544 bifunctional N5-gluta 98.9 4.6E-09 1E-13 104.2 10.3 104 158-290 139-267 (506)
136 KOG1541 Predicted protein carb 98.9 7.6E-09 1.6E-13 90.2 9.9 100 157-290 50-158 (270)
137 TIGR00438 rrmJ cell division p 98.9 4.4E-09 9.5E-14 91.0 8.4 104 156-291 31-145 (188)
138 PRK01581 speE spermidine synth 98.9 8.8E-09 1.9E-13 97.1 10.9 116 157-293 150-269 (374)
139 PRK10901 16S rRNA methyltransf 98.9 1.6E-08 3.4E-13 98.5 12.7 108 156-293 243-373 (427)
140 PRK15128 23S rRNA m(5)C1962 me 98.9 8.6E-09 1.9E-13 99.2 10.7 114 157-293 220-340 (396)
141 TIGR00563 rsmB ribosomal RNA s 98.9 1.5E-08 3.2E-13 98.7 12.2 111 155-293 236-369 (426)
142 PF05724 TPMT: Thiopurine S-me 98.9 5E-09 1.1E-13 93.0 8.0 118 156-290 36-153 (218)
143 PRK14904 16S rRNA methyltransf 98.9 1.6E-08 3.6E-13 98.9 12.0 108 156-293 249-378 (445)
144 TIGR00446 nop2p NOL1/NOP2/sun 98.9 1.5E-08 3.2E-13 92.6 10.8 110 155-293 69-200 (264)
145 KOG2899 Predicted methyltransf 98.9 1E-08 2.3E-13 90.5 9.0 134 157-290 58-207 (288)
146 PRK14903 16S rRNA methyltransf 98.9 1.9E-08 4.2E-13 98.0 11.9 110 155-293 235-367 (431)
147 KOG2940 Predicted methyltransf 98.8 4E-09 8.6E-14 92.4 5.8 101 157-290 72-172 (325)
148 PRK14902 16S rRNA methyltransf 98.8 2.8E-08 6E-13 97.3 12.0 109 156-293 249-380 (444)
149 PRK10909 rsmD 16S rRNA m(2)G96 98.8 2.3E-08 5.1E-13 87.4 9.7 105 157-292 53-159 (199)
150 PRK03612 spermidine synthase; 98.8 2.5E-08 5.5E-13 99.4 9.8 112 157-291 297-414 (521)
151 PHA03412 putative methyltransf 98.8 3.5E-08 7.7E-13 87.9 9.5 98 158-291 50-161 (241)
152 KOG2904 Predicted methyltransf 98.7 1E-07 2.3E-12 85.6 11.1 131 137-293 129-286 (328)
153 PF05148 Methyltransf_8: Hypot 98.7 1.8E-08 4E-13 87.6 5.6 89 157-294 72-160 (219)
154 KOG3045 Predicted RNA methylas 98.7 4.1E-08 8.9E-13 87.5 7.2 86 157-293 180-265 (325)
155 PRK13168 rumA 23S rRNA m(5)U19 98.7 1.3E-07 2.9E-12 92.5 11.1 106 156-293 296-401 (443)
156 COG2519 GCD14 tRNA(1-methylade 98.7 1.4E-07 3E-12 84.3 9.8 103 155-293 92-196 (256)
157 PLN02672 methionine S-methyltr 98.7 1.2E-07 2.6E-12 100.5 10.8 121 158-290 119-276 (1082)
158 COG3963 Phospholipid N-methylt 98.6 4.8E-07 1E-11 75.9 11.6 109 155-293 46-157 (194)
159 PF10294 Methyltransf_16: Puta 98.6 9.3E-08 2E-12 81.9 7.1 109 157-293 45-157 (173)
160 KOG1499 Protein arginine N-met 98.6 1.7E-07 3.7E-12 87.1 8.2 105 157-290 60-165 (346)
161 PLN02823 spermine synthase 98.6 5.5E-07 1.2E-11 84.9 11.5 110 157-290 103-218 (336)
162 COG2263 Predicted RNA methylas 98.6 1.5E-07 3.2E-12 80.6 6.9 59 157-222 45-103 (198)
163 PRK03522 rumB 23S rRNA methylu 98.6 3.3E-07 7.2E-12 85.8 9.9 102 157-293 173-275 (315)
164 PRK11727 23S rRNA mA1618 methy 98.5 3.3E-07 7.2E-12 85.7 8.9 47 157-203 114-161 (321)
165 PF03141 Methyltransf_29: Puta 98.5 6.4E-08 1.4E-12 93.8 4.0 121 135-293 98-220 (506)
166 PF09243 Rsm22: Mitochondrial 98.5 8E-07 1.7E-11 81.6 10.6 112 157-299 33-146 (274)
167 PF02390 Methyltransf_4: Putat 98.5 4.9E-07 1.1E-11 78.9 8.6 108 159-292 19-133 (195)
168 TIGR00479 rumA 23S rRNA (uraci 98.5 5E-07 1.1E-11 88.1 9.3 104 157-291 292-395 (431)
169 TIGR02085 meth_trns_rumB 23S r 98.5 8.7E-07 1.9E-11 84.9 10.8 102 157-293 233-335 (374)
170 TIGR00478 tly hemolysin TlyA f 98.5 8.1E-07 1.8E-11 79.3 9.2 39 157-195 75-113 (228)
171 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.4 1.4E-07 3E-12 85.4 3.8 136 157-295 56-202 (256)
172 PF05185 PRMT5: PRMT5 arginine 98.4 7.1E-07 1.5E-11 87.2 8.8 103 158-289 187-294 (448)
173 TIGR00095 RNA methyltransferas 98.4 7.6E-07 1.6E-11 77.3 8.0 48 157-204 49-96 (189)
174 PF08704 GCD14: tRNA methyltra 98.4 1.1E-06 2.3E-11 79.4 9.1 106 155-293 38-147 (247)
175 KOG3987 Uncharacterized conser 98.4 1.7E-07 3.7E-12 81.0 3.3 94 157-291 112-206 (288)
176 KOG1663 O-methyltransferase [S 98.4 5.2E-06 1.1E-10 73.1 12.4 132 139-305 62-195 (237)
177 COG0421 SpeE Spermidine syntha 98.4 2.2E-06 4.8E-11 78.8 9.6 109 159-291 78-189 (282)
178 COG0220 Predicted S-adenosylme 98.3 1.6E-06 3.4E-11 77.4 8.0 107 159-291 50-163 (227)
179 PF12147 Methyltransf_20: Puta 98.3 4.4E-06 9.6E-11 76.1 10.9 112 156-292 134-249 (311)
180 COG1092 Predicted SAM-dependen 98.3 1.9E-06 4.2E-11 82.5 8.5 125 133-293 203-337 (393)
181 PRK14896 ksgA 16S ribosomal RN 98.3 3.6E-06 7.8E-11 76.6 9.5 44 157-201 29-72 (258)
182 PRK00274 ksgA 16S ribosomal RN 98.3 2.4E-06 5.2E-11 78.4 8.3 43 157-200 42-84 (272)
183 PF10672 Methyltrans_SAM: S-ad 98.3 3.9E-06 8.5E-11 77.3 8.6 127 131-293 107-239 (286)
184 PRK00536 speE spermidine synth 98.2 2.8E-06 6.1E-11 77.3 7.4 99 157-291 72-170 (262)
185 PF01564 Spermine_synth: Sperm 98.2 1.6E-06 3.6E-11 78.3 5.4 112 157-292 76-191 (246)
186 TIGR00755 ksgA dimethyladenosi 98.2 8E-06 1.7E-10 74.0 9.9 44 157-201 29-72 (253)
187 PF02527 GidB: rRNA small subu 98.2 7.2E-06 1.6E-10 70.9 8.8 117 137-292 31-148 (184)
188 PF03602 Cons_hypoth95: Conser 98.2 2E-06 4.3E-11 74.3 5.4 109 157-293 42-153 (183)
189 KOG1500 Protein arginine N-met 98.2 7.7E-06 1.7E-10 75.6 9.0 103 157-290 177-280 (517)
190 PTZ00338 dimethyladenosine tra 98.2 5.8E-06 1.2E-10 76.7 8.3 46 156-202 35-80 (294)
191 TIGR03439 methyl_EasF probable 98.2 1.6E-05 3.4E-10 74.5 10.6 112 157-291 76-196 (319)
192 TIGR02143 trmA_only tRNA (urac 98.1 1.4E-05 3E-10 76.1 9.9 57 159-222 199-255 (353)
193 COG0500 SmtA SAM-dependent met 98.1 4.9E-05 1.1E-09 60.0 11.5 103 161-295 52-158 (257)
194 PF07942 N2227: N2227-like pro 98.1 2.4E-05 5.2E-10 71.4 10.4 130 157-291 56-201 (270)
195 PRK05031 tRNA (uracil-5-)-meth 98.1 1.6E-05 3.4E-10 76.0 9.6 57 159-222 208-264 (362)
196 KOG3191 Predicted N6-DNA-methy 98.1 1.8E-05 3.9E-10 67.4 8.8 104 158-292 44-168 (209)
197 KOG1661 Protein-L-isoaspartate 98.1 1.2E-05 2.5E-10 70.0 7.3 107 157-291 82-192 (237)
198 PRK04338 N(2),N(2)-dimethylgua 98.1 1.2E-05 2.6E-10 77.2 8.0 99 158-291 58-157 (382)
199 PRK04148 hypothetical protein; 98.0 7.6E-05 1.6E-09 61.0 11.3 91 157-291 16-108 (134)
200 COG1041 Predicted DNA modifica 98.0 2E-05 4.3E-10 73.8 8.8 109 155-293 195-311 (347)
201 PRK11933 yebU rRNA (cytosine-C 98.0 2.8E-05 6.1E-10 76.5 10.3 109 155-292 111-242 (470)
202 PRK01544 bifunctional N5-gluta 98.0 2.2E-05 4.8E-10 78.1 9.6 127 139-292 326-462 (506)
203 PF01170 UPF0020: Putative RNA 98.0 3.1E-05 6.6E-10 66.7 8.4 110 156-293 27-152 (179)
204 KOG3420 Predicted RNA methylas 98.0 7E-06 1.5E-10 67.4 3.7 77 157-263 48-124 (185)
205 KOG1269 SAM-dependent methyltr 97.9 8.5E-06 1.9E-10 77.5 4.6 112 157-298 110-221 (364)
206 PF02475 Met_10: Met-10+ like- 97.9 2E-05 4.3E-10 69.0 5.9 98 157-289 101-199 (200)
207 PF01728 FtsJ: FtsJ-like methy 97.8 3.2E-05 7E-10 66.3 5.4 35 157-191 23-59 (181)
208 COG0357 GidB Predicted S-adeno 97.8 0.00019 4.2E-09 63.3 10.0 115 136-290 49-166 (215)
209 COG0742 N6-adenine-specific me 97.8 0.00013 2.7E-09 63.0 8.5 106 157-290 43-152 (187)
210 TIGR00308 TRM1 tRNA(guanine-26 97.8 7.4E-05 1.6E-09 71.5 7.6 101 158-292 45-147 (374)
211 KOG2352 Predicted spermine/spe 97.7 0.00018 3.9E-09 69.9 9.4 105 159-293 50-162 (482)
212 COG2521 Predicted archaeal met 97.7 5.2E-05 1.1E-09 67.1 4.6 110 155-290 132-243 (287)
213 PF08123 DOT1: Histone methyla 97.6 0.00043 9.4E-09 60.9 9.8 124 155-300 40-166 (205)
214 KOG1331 Predicted methyltransf 97.6 5.4E-05 1.2E-09 68.8 3.4 97 157-291 45-142 (293)
215 COG0030 KsgA Dimethyladenosine 97.6 0.00032 7E-09 63.6 8.2 57 140-201 17-73 (259)
216 COG2520 Predicted methyltransf 97.5 0.00029 6.3E-09 66.3 8.1 108 157-298 188-295 (341)
217 TIGR02987 met_A_Alw26 type II 97.5 0.00032 7E-09 70.2 8.8 46 157-202 31-85 (524)
218 KOG0820 Ribosomal RNA adenine 97.5 0.00037 8E-09 63.1 8.0 49 154-203 55-103 (315)
219 PF09445 Methyltransf_15: RNA 97.5 0.00012 2.7E-09 61.8 4.4 57 160-222 2-58 (163)
220 COG1189 Predicted rRNA methyla 97.5 0.00032 6.8E-09 62.4 7.1 96 157-290 79-176 (245)
221 COG2265 TrmA SAM-dependent met 97.5 0.00066 1.4E-08 66.2 10.0 59 157-222 293-351 (432)
222 PF11968 DUF3321: Putative met 97.5 0.00044 9.6E-09 60.7 7.7 43 250-292 101-149 (219)
223 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00026 5.6E-09 65.6 6.4 46 156-201 18-65 (296)
224 COG4076 Predicted RNA methylas 97.4 0.00049 1.1E-08 59.1 7.4 101 159-291 34-134 (252)
225 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.00049 1.1E-08 64.0 8.2 111 155-291 44-182 (311)
226 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.00074 1.6E-08 70.0 9.9 108 157-292 190-347 (702)
227 KOG1709 Guanidinoacetate methy 97.4 0.0015 3.3E-08 57.3 10.1 112 157-298 101-212 (271)
228 PF13679 Methyltransf_32: Meth 97.3 0.0016 3.5E-08 53.6 9.3 64 136-202 7-75 (141)
229 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0018 3.9E-08 59.0 9.4 44 157-201 30-73 (262)
230 PF03059 NAS: Nicotianamine sy 97.2 0.0015 3.2E-08 59.9 8.7 106 157-291 120-229 (276)
231 COG3897 Predicted methyltransf 97.2 0.00056 1.2E-08 59.1 5.4 98 157-290 79-176 (218)
232 PF05958 tRNA_U5-meth_tr: tRNA 97.2 0.00066 1.4E-08 64.6 6.3 64 137-206 181-244 (352)
233 COG0144 Sun tRNA and rRNA cyto 97.2 0.0049 1.1E-07 58.7 11.6 113 155-293 154-289 (355)
234 COG4627 Uncharacterized protei 97.1 0.00019 4.2E-09 59.6 1.6 55 246-303 40-94 (185)
235 COG4798 Predicted methyltransf 97.1 0.00085 1.8E-08 57.9 5.5 115 155-300 46-174 (238)
236 KOG2798 Putative trehalase [Ca 97.1 0.003 6.4E-08 58.4 9.3 132 156-292 149-296 (369)
237 TIGR01444 fkbM_fam methyltrans 97.1 0.00099 2.1E-08 54.4 5.6 45 160-204 1-46 (143)
238 COG4262 Predicted spermidine s 97.1 0.0015 3.3E-08 61.4 7.2 112 157-292 289-407 (508)
239 COG5459 Predicted rRNA methyla 97.0 0.002 4.3E-08 60.4 7.4 117 157-299 113-232 (484)
240 COG0116 Predicted N6-adenine-s 97.0 0.0046 9.9E-08 58.9 9.8 109 157-293 191-345 (381)
241 PRK11760 putative 23S rRNA C24 97.0 0.0022 4.8E-08 60.3 7.1 34 156-190 210-243 (357)
242 KOG2915 tRNA(1-methyladenosine 96.9 0.0051 1.1E-07 55.8 8.6 106 155-293 103-211 (314)
243 KOG2730 Methylase [General fun 96.9 0.00078 1.7E-08 59.2 3.2 59 158-222 95-153 (263)
244 PF01269 Fibrillarin: Fibrilla 96.9 0.0094 2E-07 52.8 10.0 102 154-292 70-178 (229)
245 PF04816 DUF633: Family of unk 96.8 0.0059 1.3E-07 53.7 8.0 45 161-205 1-46 (205)
246 KOG3201 Uncharacterized conser 96.8 0.0022 4.8E-08 53.9 4.7 109 157-291 29-139 (201)
247 PF05971 Methyltransf_10: Prot 96.6 0.0098 2.1E-07 55.1 8.5 46 158-203 103-149 (299)
248 COG0293 FtsJ 23S rRNA methylas 96.5 0.013 2.8E-07 51.3 8.1 106 156-293 44-160 (205)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.4 0.014 3E-07 53.9 8.3 110 155-292 83-219 (283)
250 KOG2187 tRNA uracil-5-methyltr 96.4 0.0046 9.9E-08 60.6 5.1 58 155-219 381-438 (534)
251 PF04672 Methyltransf_19: S-ad 96.4 0.024 5.2E-07 51.7 9.4 139 135-294 49-192 (267)
252 PF13578 Methyltransf_24: Meth 96.4 0.00094 2E-08 51.9 0.3 101 162-292 1-105 (106)
253 PF06859 Bin3: Bicoid-interact 96.2 0.0032 6.9E-08 49.5 2.1 38 253-290 1-42 (110)
254 PHA01634 hypothetical protein 96.0 0.022 4.8E-07 46.1 6.3 46 157-202 28-73 (156)
255 PF03141 Methyltransf_29: Puta 96.0 0.0096 2.1E-07 58.4 5.0 48 246-293 420-468 (506)
256 KOG2539 Mitochondrial/chloropl 95.9 0.019 4.1E-07 55.8 6.7 117 156-298 199-321 (491)
257 KOG2793 Putative N2,N2-dimethy 95.8 0.029 6.2E-07 50.7 6.9 115 157-293 86-200 (248)
258 KOG3115 Methyltransferase-like 95.8 0.027 6E-07 49.1 6.3 46 157-203 60-107 (249)
259 cd00315 Cyt_C5_DNA_methylase C 95.7 0.088 1.9E-06 48.3 10.1 42 160-201 2-43 (275)
260 PF07091 FmrO: Ribosomal RNA m 95.4 0.04 8.7E-07 49.6 6.2 63 135-203 89-152 (251)
261 PF06962 rRNA_methylase: Putat 95.3 0.031 6.8E-07 46.0 4.8 84 182-293 1-93 (140)
262 COG2384 Predicted SAM-dependen 95.3 0.22 4.7E-06 44.1 10.3 48 157-204 16-64 (226)
263 PF11312 DUF3115: Protein of u 95.0 0.14 3E-06 47.6 8.8 126 157-293 86-243 (315)
264 COG1889 NOP1 Fibrillarin-like 94.9 0.29 6.2E-06 42.9 9.9 111 149-291 68-179 (231)
265 PRK10742 putative methyltransf 94.9 0.051 1.1E-06 49.1 5.4 42 160-202 91-132 (250)
266 PLN02668 indole-3-acetate carb 94.8 0.1 2.2E-06 50.2 7.6 44 249-292 158-237 (386)
267 PF03492 Methyltransf_7: SAM d 94.7 0.077 1.7E-06 50.2 6.3 22 156-177 15-36 (334)
268 KOG1501 Arginine N-methyltrans 94.5 0.066 1.4E-06 51.8 5.4 48 158-205 67-114 (636)
269 COG4301 Uncharacterized conser 94.5 0.32 7E-06 43.9 9.3 109 157-291 78-192 (321)
270 TIGR00006 S-adenosyl-methyltra 94.4 0.056 1.2E-06 50.4 4.7 47 156-202 19-66 (305)
271 KOG1562 Spermidine synthase [A 94.3 0.061 1.3E-06 49.5 4.6 114 156-293 120-237 (337)
272 COG3129 Predicted SAM-dependen 94.1 0.11 2.4E-06 46.3 5.6 47 156-203 77-125 (292)
273 KOG1122 tRNA and rRNA cytosine 94.0 0.25 5.5E-06 47.6 8.0 53 155-207 239-293 (460)
274 KOG0822 Protein kinase inhibit 93.9 0.16 3.5E-06 50.2 6.8 120 140-290 351-476 (649)
275 KOG4058 Uncharacterized conser 93.9 0.4 8.6E-06 40.0 8.0 60 137-200 56-115 (199)
276 PF01861 DUF43: Protein of unk 93.9 0.66 1.4E-05 41.7 10.1 98 157-286 44-142 (243)
277 COG1064 AdhP Zn-dependent alco 93.2 0.54 1.2E-05 44.5 8.9 98 155-295 164-262 (339)
278 PF11599 AviRa: RRNA methyltra 93.0 0.37 8E-06 42.6 7.0 45 156-201 50-98 (246)
279 PF01795 Methyltransf_5: MraW 93.0 0.41 8.9E-06 44.7 7.7 47 156-202 19-66 (310)
280 PF02005 TRM: N2,N2-dimethylgu 92.8 0.23 5E-06 47.8 6.0 105 157-293 49-155 (377)
281 PF01555 N6_N4_Mtase: DNA meth 92.8 0.31 6.8E-06 42.3 6.4 57 136-198 175-231 (231)
282 KOG2920 Predicted methyltransf 92.7 0.092 2E-06 48.1 2.9 39 156-194 115-153 (282)
283 PRK11524 putative methyltransf 92.5 0.44 9.6E-06 43.9 7.3 59 137-201 193-251 (284)
284 PF04445 SAM_MT: Putative SAM- 92.4 0.095 2.1E-06 46.9 2.6 82 159-260 77-158 (234)
285 PF03269 DUF268: Caenorhabditi 91.3 0.16 3.5E-06 42.8 2.6 52 251-302 61-121 (177)
286 KOG1596 Fibrillarin and relate 91.0 0.77 1.7E-05 41.3 6.6 44 155-199 154-204 (317)
287 PF07757 AdoMet_MTase: Predict 90.9 0.44 9.4E-06 37.5 4.4 47 138-188 42-88 (112)
288 PF02636 Methyltransf_28: Puta 90.8 0.3 6.5E-06 44.1 4.1 46 157-202 18-72 (252)
289 PF04989 CmcI: Cephalosporin h 90.7 0.56 1.2E-05 41.2 5.5 112 157-293 32-148 (206)
290 cd08283 FDH_like_1 Glutathione 90.2 1.4 3.1E-05 42.1 8.4 45 155-199 182-228 (386)
291 TIGR00675 dcm DNA-methyltransf 90.1 1.3 2.8E-05 41.5 7.8 41 161-201 1-41 (315)
292 PRK13699 putative methylase; P 89.7 1.3 2.7E-05 39.6 7.1 60 137-202 148-207 (227)
293 KOG2651 rRNA adenine N-6-methy 88.8 1.2 2.6E-05 42.7 6.4 41 157-198 153-194 (476)
294 COG0286 HsdM Type I restrictio 88.7 4.2 9E-05 40.6 10.6 45 157-201 186-235 (489)
295 COG0275 Predicted S-adenosylme 88.6 3 6.6E-05 38.7 8.8 48 155-202 21-70 (314)
296 PRK09424 pntA NAD(P) transhydr 88.1 3.6 7.7E-05 41.2 9.7 45 155-199 162-207 (509)
297 PF00145 DNA_methylase: C-5 cy 87.9 1.2 2.6E-05 41.0 6.0 42 160-201 2-43 (335)
298 COG3510 CmcI Cephalosporin hyd 87.9 1.2 2.7E-05 38.7 5.4 109 157-295 69-183 (237)
299 PF11899 DUF3419: Protein of u 87.6 0.66 1.4E-05 44.7 4.0 61 233-293 274-335 (380)
300 COG0270 Dcm Site-specific DNA 87.5 2.6 5.6E-05 39.7 8.0 44 158-201 3-46 (328)
301 PF10354 DUF2431: Domain of un 86.8 3.1 6.7E-05 35.2 7.3 42 250-293 72-126 (166)
302 COG1867 TRM1 N2,N2-dimethylgua 86.8 1.9 4E-05 41.1 6.4 102 158-293 53-155 (380)
303 KOG0024 Sorbitol dehydrogenase 86.7 3 6.4E-05 39.2 7.6 46 155-201 167-214 (354)
304 PF07279 DUF1442: Protein of u 86.5 12 0.00027 33.1 11.0 120 136-296 27-152 (218)
305 cd08254 hydroxyacyl_CoA_DH 6-h 86.4 3.5 7.7E-05 37.8 8.2 43 156-198 164-207 (338)
306 TIGR00027 mthyl_TIGR00027 meth 86.1 7.4 0.00016 35.4 10.0 38 253-290 158-195 (260)
307 PRK09880 L-idonate 5-dehydroge 86.1 3.9 8.4E-05 38.3 8.4 97 157-293 169-267 (343)
308 PRK01747 mnmC bifunctional tRN 86.0 1.1 2.3E-05 46.3 4.9 54 235-290 148-204 (662)
309 COG1063 Tdh Threonine dehydrog 85.5 3.3 7.2E-05 39.2 7.7 102 157-294 168-271 (350)
310 KOG1253 tRNA methyltransferase 85.5 0.74 1.6E-05 45.3 3.2 108 156-293 108-217 (525)
311 KOG1099 SAM-dependent methyltr 85.3 1.5 3.3E-05 39.2 4.8 40 251-290 113-161 (294)
312 COG1565 Uncharacterized conser 85.1 2.2 4.9E-05 40.5 6.1 47 157-203 77-132 (370)
313 PRK10458 DNA cytosine methylas 85.0 12 0.00026 37.1 11.4 44 157-200 87-130 (467)
314 cd05188 MDR Medium chain reduc 85.0 5.8 0.00013 34.8 8.6 44 156-199 133-177 (271)
315 KOG4589 Cell division protein 84.9 1.1 2.4E-05 38.8 3.6 32 156-188 68-102 (232)
316 KOG2352 Predicted spermine/spe 84.1 0.94 2E-05 44.5 3.2 119 157-300 295-423 (482)
317 PF00107 ADH_zinc_N: Zinc-bind 82.3 3.5 7.6E-05 32.4 5.5 92 167-295 1-92 (130)
318 cd08232 idonate-5-DH L-idonate 82.2 7 0.00015 36.1 8.3 42 157-198 165-208 (339)
319 KOG2198 tRNA cytosine-5-methyl 81.6 7 0.00015 37.3 7.8 47 155-201 153-204 (375)
320 cd08230 glucose_DH Glucose deh 81.2 9.4 0.0002 35.8 8.8 96 157-294 172-271 (355)
321 PLN03154 putative allyl alcoho 78.8 9.3 0.0002 35.9 7.9 45 156-200 157-203 (348)
322 TIGR02822 adh_fam_2 zinc-bindi 78.0 20 0.00043 33.3 9.9 45 155-199 163-208 (329)
323 KOG1227 Putative methyltransfe 77.1 2.2 4.8E-05 39.6 2.9 46 158-203 195-241 (351)
324 TIGR02825 B4_12hDH leukotriene 75.4 16 0.00035 33.6 8.4 43 156-198 137-181 (325)
325 PF05711 TylF: Macrocin-O-meth 74.8 13 0.00029 33.6 7.4 56 234-293 157-213 (248)
326 PRK11524 putative methyltransf 74.1 3.2 7E-05 38.1 3.3 42 250-291 24-79 (284)
327 KOG0821 Predicted ribosomal RN 73.1 3.8 8.3E-05 36.5 3.3 44 157-200 50-93 (326)
328 PF11899 DUF3419: Protein of u 73.1 7.8 0.00017 37.4 5.7 45 155-200 33-77 (380)
329 cd08255 2-desacetyl-2-hydroxye 72.8 31 0.00066 30.7 9.4 44 156-199 96-141 (277)
330 PTZ00357 methyltransferase; Pr 72.7 13 0.00029 38.5 7.4 113 159-287 702-830 (1072)
331 TIGR03451 mycoS_dep_FDH mycoth 72.5 16 0.00034 34.3 7.7 43 156-198 175-219 (358)
332 PF05050 Methyltransf_21: Meth 71.1 7.9 0.00017 31.5 4.7 37 163-199 1-42 (167)
333 cd08245 CAD Cinnamyl alcohol d 69.6 35 0.00077 31.2 9.3 43 156-198 161-204 (330)
334 COG0686 Ald Alanine dehydrogen 68.8 11 0.00023 35.5 5.3 98 157-289 167-265 (371)
335 TIGR03201 dearomat_had 6-hydro 68.2 30 0.00064 32.3 8.5 44 155-198 164-208 (349)
336 cd08295 double_bond_reductase_ 66.9 31 0.00066 31.9 8.3 46 155-200 149-196 (338)
337 cd01842 SGNH_hydrolase_like_5 66.9 9.8 0.00021 32.7 4.4 43 250-292 47-99 (183)
338 cd08234 threonine_DH_like L-th 66.1 43 0.00094 30.6 9.1 43 156-198 158-202 (334)
339 TIGR00518 alaDH alanine dehydr 66.0 9.3 0.0002 36.6 4.6 44 157-200 166-210 (370)
340 TIGR01202 bchC 2-desacetyl-2-h 65.7 30 0.00066 31.7 7.9 34 252-293 199-232 (308)
341 COG0604 Qor NADPH:quinone redu 65.5 29 0.00062 32.6 7.8 103 155-295 140-244 (326)
342 PRK12480 D-lactate dehydrogena 64.9 13 0.00029 35.0 5.4 48 252-306 197-244 (330)
343 PF07652 Flavi_DEAD: Flaviviru 64.6 69 0.0015 26.6 8.9 128 157-300 4-140 (148)
344 cd08281 liver_ADH_like1 Zinc-d 63.9 34 0.00073 32.3 8.0 43 156-198 190-234 (371)
345 cd05278 FDH_like Formaldehyde 63.6 31 0.00066 31.8 7.6 43 156-198 166-210 (347)
346 PF02254 TrkA_N: TrkA-N domain 63.5 36 0.00078 26.0 6.9 35 166-200 4-41 (116)
347 TIGR00561 pntA NAD(P) transhyd 63.3 22 0.00048 35.7 6.8 43 156-198 162-205 (511)
348 cd08294 leukotriene_B4_DH_like 63.2 43 0.00093 30.5 8.4 43 156-198 142-186 (329)
349 PF03514 GRAS: GRAS domain fam 61.8 58 0.0013 31.3 9.2 45 157-201 110-166 (374)
350 cd08261 Zn_ADH7 Alcohol dehydr 60.8 36 0.00079 31.3 7.5 43 156-198 158-201 (337)
351 cd08293 PTGR2 Prostaglandin re 60.7 33 0.00072 31.6 7.3 42 159-200 156-200 (345)
352 PF05206 TRM13: Methyltransfer 60.6 24 0.00051 32.2 6.0 35 156-190 17-57 (259)
353 COG4017 Uncharacterized protei 60.1 36 0.00079 29.8 6.6 94 157-302 44-138 (254)
354 PRK05708 2-dehydropantoate 2-r 59.9 72 0.0016 29.5 9.3 101 159-293 3-105 (305)
355 cd00401 AdoHcyase S-adenosyl-L 59.6 40 0.00087 32.9 7.7 42 157-198 201-243 (413)
356 PRK07417 arogenate dehydrogena 59.4 61 0.0013 29.5 8.6 38 160-198 2-41 (279)
357 PF01210 NAD_Gly3P_dh_N: NAD-d 58.6 64 0.0014 26.6 7.9 100 160-291 1-102 (157)
358 PRK07502 cyclohexadienyl dehyd 58.5 58 0.0013 30.0 8.4 40 159-198 7-49 (307)
359 PF04072 LCM: Leucine carboxyl 57.8 88 0.0019 26.5 8.9 101 160-278 81-182 (183)
360 cd05285 sorbitol_DH Sorbitol d 56.3 92 0.002 28.7 9.5 43 156-198 161-205 (343)
361 cd08237 ribitol-5-phosphate_DH 55.5 74 0.0016 29.6 8.7 93 156-293 162-257 (341)
362 PF14740 DUF4471: Domain of un 55.5 9.6 0.00021 35.3 2.6 54 232-293 198-254 (289)
363 COG2933 Predicted SAM-dependen 55.1 34 0.00073 31.5 5.8 37 153-190 207-243 (358)
364 cd08239 THR_DH_like L-threonin 54.4 52 0.0011 30.3 7.5 43 156-198 162-206 (339)
365 cd08285 NADP_ADH NADP(H)-depen 54.3 65 0.0014 29.9 8.1 43 156-198 165-209 (351)
366 cd08236 sugar_DH NAD(P)-depend 53.5 64 0.0014 29.7 7.9 43 156-198 158-202 (343)
367 COG1568 Predicted methyltransf 51.2 56 0.0012 30.3 6.7 104 157-292 152-260 (354)
368 PRK06522 2-dehydropantoate 2-r 50.7 1.2E+02 0.0025 27.5 9.1 37 252-293 65-101 (304)
369 PF02153 PDH: Prephenate dehyd 50.5 59 0.0013 29.3 6.9 32 253-289 45-76 (258)
370 PRK08507 prephenate dehydrogen 49.9 78 0.0017 28.6 7.7 38 160-197 2-42 (275)
371 TIGR03366 HpnZ_proposed putati 49.6 94 0.002 27.9 8.2 43 157-199 120-164 (280)
372 COG3315 O-Methyltransferase in 49.2 82 0.0018 29.3 7.7 108 158-292 93-209 (297)
373 PRK12921 2-dehydropantoate 2-r 47.9 99 0.0021 28.1 8.1 37 252-293 67-103 (305)
374 PF02558 ApbA: Ketopantoate re 45.1 69 0.0015 25.7 6.0 38 251-293 65-102 (151)
375 COG0863 DNA modification methy 44.1 92 0.002 28.1 7.2 60 137-202 207-266 (302)
376 COG5379 BtaA S-adenosylmethion 44.0 53 0.0012 30.7 5.4 44 157-201 63-106 (414)
377 PRK15001 SAM-dependent 23S rib 43.9 1.4E+02 0.0031 28.7 8.7 41 251-294 104-144 (378)
378 TIGR00936 ahcY adenosylhomocys 42.6 1.1E+02 0.0023 29.9 7.6 40 157-196 194-234 (406)
379 PLN02586 probable cinnamyl alc 42.4 78 0.0017 29.8 6.7 32 253-292 247-278 (360)
380 PF03721 UDPG_MGDP_dh_N: UDP-g 42.4 34 0.00073 29.3 3.8 29 270-299 98-126 (185)
381 COG0541 Ffh Signal recognition 42.3 89 0.0019 30.8 6.9 119 156-296 98-225 (451)
382 PRK15469 ghrA bifunctional gly 42.3 21 0.00045 33.4 2.7 47 252-306 189-236 (312)
383 TIGR00872 gnd_rel 6-phosphoglu 42.0 1.1E+02 0.0025 28.0 7.6 38 160-198 2-41 (298)
384 PLN02740 Alcohol dehydrogenase 41.3 1.3E+02 0.0029 28.3 8.2 44 155-198 196-241 (381)
385 cd08241 QOR1 Quinone oxidoredu 40.7 1.5E+02 0.0033 26.3 8.1 43 156-198 138-182 (323)
386 PF02826 2-Hacid_dh_C: D-isome 40.3 14 0.00031 31.3 1.1 36 157-194 35-73 (178)
387 PRK13243 glyoxylate reductase; 40.0 28 0.00061 32.8 3.2 35 157-191 149-184 (333)
388 KOG2078 tRNA modification enzy 39.8 18 0.00039 35.4 1.8 47 157-204 249-295 (495)
389 PRK07680 late competence prote 39.0 1.4E+02 0.0029 27.0 7.5 33 253-290 62-94 (273)
390 PF10237 N6-adenineMlase: Prob 38.7 2.4E+02 0.0052 23.7 10.4 96 157-291 25-122 (162)
391 cd08246 crotonyl_coA_red croto 38.3 1.3E+02 0.0029 28.4 7.6 43 156-198 192-236 (393)
392 PRK06249 2-dehydropantoate 2-r 38.1 1.4E+02 0.0031 27.5 7.6 37 252-293 71-107 (313)
393 PRK00094 gpsA NAD(P)H-dependen 37.7 3.2E+02 0.0069 24.9 10.4 37 252-293 70-106 (325)
394 KOG2671 Putative RNA methylase 37.6 22 0.00048 33.9 2.0 40 155-195 206-245 (421)
395 PF01555 N6_N4_Mtase: DNA meth 37.5 19 0.00041 30.8 1.5 22 270-291 34-55 (231)
396 COG1052 LdhA Lactate dehydroge 37.2 23 0.0005 33.3 2.1 48 252-306 199-246 (324)
397 cd05281 TDH Threonine dehydrog 37.0 2E+02 0.0042 26.5 8.4 42 157-198 163-206 (341)
398 PRK08655 prephenate dehydrogen 36.8 1.7E+02 0.0037 28.7 8.2 33 160-193 2-37 (437)
399 cd08233 butanediol_DH_like (2R 36.6 1.6E+02 0.0034 27.2 7.7 43 156-198 171-215 (351)
400 COG1004 Ugd Predicted UDP-gluc 36.1 2E+02 0.0044 28.0 8.2 40 160-199 2-42 (414)
401 cd08242 MDR_like Medium chain 36.0 3.1E+02 0.0067 24.7 9.5 41 156-198 154-197 (319)
402 PTZ00075 Adenosylhomocysteinas 35.9 69 0.0015 31.9 5.2 36 157-194 253-291 (476)
403 cd08297 CAD3 Cinnamyl alcohol 35.9 1.7E+02 0.0036 26.8 7.7 42 156-197 164-207 (341)
404 PRK14620 NAD(P)H-dependent gly 35.7 3.4E+02 0.0074 25.0 9.8 37 252-293 70-107 (326)
405 PF05430 Methyltransf_30: S-ad 35.5 12 0.00026 30.1 -0.1 54 236-290 33-88 (124)
406 cd08263 Zn_ADH10 Alcohol dehyd 35.2 1.4E+02 0.0031 27.8 7.2 42 157-198 187-230 (367)
407 PLN02514 cinnamyl-alcohol dehy 34.8 1.9E+02 0.0042 27.0 8.0 44 157-200 180-224 (357)
408 PRK15057 UDP-glucose 6-dehydro 34.3 3.1E+02 0.0067 26.4 9.4 40 160-200 2-42 (388)
409 PTZ00117 malate dehydrogenase; 33.9 1.6E+02 0.0034 27.5 7.2 38 157-194 4-43 (319)
410 PRK05476 S-adenosyl-L-homocyst 33.6 1.5E+02 0.0033 29.0 7.2 40 157-196 211-251 (425)
411 KOG1098 Putative SAM-dependent 33.0 38 0.00082 34.8 2.9 33 157-190 44-79 (780)
412 cd05286 QOR2 Quinone oxidoredu 32.7 1.9E+02 0.0042 25.5 7.4 42 157-198 136-179 (320)
413 KOG0023 Alcohol dehydrogenase, 32.6 1.1E+02 0.0023 29.1 5.5 46 157-202 181-227 (360)
414 PRK13699 putative methylase; P 32.3 42 0.00091 29.8 2.9 20 271-290 51-70 (227)
415 TIGR00006 S-adenosyl-methyltra 32.2 47 0.001 31.1 3.2 23 270-292 218-240 (305)
416 PRK05479 ketol-acid reductoiso 32.1 1.8E+02 0.0039 27.5 7.2 35 252-291 72-107 (330)
417 cd05292 LDH_2 A subgroup of L- 31.9 3.2E+02 0.0068 25.3 8.8 35 160-194 2-39 (308)
418 COG5379 BtaA S-adenosylmethion 31.5 57 0.0012 30.5 3.6 61 233-293 306-367 (414)
419 COG1255 Uncharacterized protei 31.4 2.8E+02 0.006 22.3 7.2 34 157-191 13-47 (129)
420 PRK05396 tdh L-threonine 3-deh 31.3 2E+02 0.0042 26.4 7.4 42 157-198 163-206 (341)
421 PRK09496 trkA potassium transp 31.3 1.3E+02 0.0027 29.2 6.3 42 157-200 230-274 (453)
422 PRK07574 formate dehydrogenase 31.2 62 0.0013 31.3 4.0 46 252-305 247-293 (385)
423 KOG3924 Putative protein methy 31.0 34 0.00074 33.1 2.1 117 155-296 190-312 (419)
424 TIGR00692 tdh L-threonine 3-de 30.9 2.2E+02 0.0048 26.1 7.7 33 252-292 229-261 (340)
425 PLN02688 pyrroline-5-carboxyla 30.7 1.7E+02 0.0038 26.0 6.7 32 253-289 61-92 (266)
426 PLN02353 probable UDP-glucose 30.0 2.9E+02 0.0063 27.5 8.6 41 159-199 2-45 (473)
427 cd08266 Zn_ADH_like1 Alcohol d 30.0 2.2E+02 0.0047 25.6 7.4 42 157-198 166-209 (342)
428 PF03446 NAD_binding_2: NAD bi 29.9 40 0.00087 27.9 2.2 36 253-292 57-94 (163)
429 PF08468 MTS_N: Methyltransfer 29.8 91 0.002 26.0 4.3 39 252-293 68-107 (155)
430 PLN03139 formate dehydrogenase 29.6 65 0.0014 31.1 3.9 45 253-305 255-300 (386)
431 COG0275 Predicted S-adenosylme 29.5 58 0.0013 30.5 3.3 23 270-292 222-244 (314)
432 PRK00050 16S rRNA m(4)C1402 me 29.5 55 0.0012 30.4 3.2 23 270-292 214-236 (296)
433 PF12692 Methyltransf_17: S-ad 29.4 1.6E+02 0.0035 24.7 5.5 32 157-188 28-60 (160)
434 cd08279 Zn_ADH_class_III Class 29.3 2.5E+02 0.0054 26.1 7.8 42 156-197 181-224 (363)
435 PF07101 DUF1363: Protein of u 29.2 20 0.00043 27.5 0.2 14 161-174 6-19 (124)
436 PLN02494 adenosylhomocysteinas 29.0 1.2E+02 0.0027 30.1 5.7 40 157-196 253-293 (477)
437 PRK06223 malate dehydrogenase; 28.9 3.2E+02 0.007 25.0 8.3 35 159-193 3-39 (307)
438 PF02737 3HCDH_N: 3-hydroxyacy 28.2 1.3E+02 0.0028 25.5 5.1 110 161-290 2-112 (180)
439 cd08278 benzyl_alcohol_DH Benz 28.2 2.3E+02 0.0049 26.5 7.3 43 156-198 185-229 (365)
440 cd08231 MDR_TM0436_like Hypoth 27.8 4.5E+02 0.0097 24.3 9.2 42 157-198 177-220 (361)
441 PRK03659 glutathione-regulated 27.0 2.7E+02 0.0059 28.5 8.0 38 159-198 401-441 (601)
442 PF07090 DUF1355: Protein of u 27.0 62 0.0013 27.7 2.9 41 252-292 66-108 (177)
443 cd08296 CAD_like Cinnamyl alco 26.9 2.5E+02 0.0054 25.7 7.3 43 156-198 162-205 (333)
444 cd05288 PGDH Prostaglandin deh 26.9 3.4E+02 0.0074 24.4 8.1 44 157-200 145-190 (329)
445 PRK11064 wecC UDP-N-acetyl-D-m 26.8 3E+02 0.0065 26.7 8.0 38 159-196 4-42 (415)
446 PRK08306 dipicolinate synthase 26.6 1.9E+02 0.0042 26.6 6.3 41 157-197 151-192 (296)
447 cd00650 LDH_MDH_like NAD-depen 26.5 1.6E+02 0.0035 26.4 5.7 22 271-293 99-120 (263)
448 cd08277 liver_alcohol_DH_like 26.5 5.3E+02 0.011 24.0 9.7 43 156-198 183-227 (365)
449 PTZ00354 alcohol dehydrogenase 26.4 3.1E+02 0.0068 24.6 7.8 42 157-198 140-183 (334)
450 cd08292 ETR_like_2 2-enoyl thi 26.2 2.3E+02 0.005 25.5 6.8 43 156-198 138-182 (324)
451 PF14737 DUF4470: Domain of un 25.5 1.8E+02 0.004 21.9 5.1 41 155-195 21-68 (100)
452 cd08244 MDR_enoyl_red Possible 25.5 3.5E+02 0.0076 24.2 7.9 43 156-198 141-185 (324)
453 PRK00066 ldh L-lactate dehydro 25.4 3E+02 0.0066 25.6 7.5 39 156-194 4-45 (315)
454 TIGR00497 hsdM type I restrict 25.3 4.3E+02 0.0093 26.3 9.0 44 157-200 217-265 (501)
455 PRK15182 Vi polysaccharide bio 25.1 2.1E+02 0.0045 28.0 6.5 39 157-197 5-45 (425)
456 PRK10309 galactitol-1-phosphat 25.0 2.7E+02 0.0059 25.6 7.2 43 156-198 159-203 (347)
457 PRK12491 pyrroline-5-carboxyla 24.9 1.8E+02 0.0039 26.5 5.7 41 159-199 3-48 (272)
458 PRK08410 2-hydroxyacid dehydro 24.9 25 0.00054 32.8 0.1 34 157-190 144-178 (311)
459 PRK12490 6-phosphogluconate de 24.7 2.5E+02 0.0055 25.7 6.8 36 161-197 3-40 (299)
460 cd05289 MDR_like_2 alcohol deh 24.5 4.8E+02 0.01 22.8 9.0 39 157-196 144-184 (309)
461 PRK05786 fabG 3-ketoacyl-(acyl 24.4 4.4E+02 0.0096 22.4 8.2 41 158-199 5-48 (238)
462 PRK09489 rsmC 16S ribosomal RN 24.2 1.2E+02 0.0025 28.8 4.5 39 251-292 74-112 (342)
463 cd08268 MDR2 Medium chain dehy 24.2 3.7E+02 0.0079 23.8 7.7 41 157-197 144-186 (328)
464 PF01795 Methyltransf_5: MraW 24.1 51 0.0011 30.9 2.0 23 270-292 219-241 (310)
465 PRK10669 putative cation:proto 24.1 3.2E+02 0.0069 27.6 7.9 38 159-198 418-458 (558)
466 cd08235 iditol_2_DH_like L-idi 24.0 3.5E+02 0.0076 24.6 7.7 43 156-198 164-208 (343)
467 PF06690 DUF1188: Protein of u 23.9 4.3E+02 0.0094 23.9 7.6 36 160-196 44-80 (252)
468 cd05291 HicDH_like L-2-hydroxy 23.7 2.4E+02 0.0052 26.0 6.5 36 160-195 2-40 (306)
469 cd08243 quinone_oxidoreductase 23.6 4.2E+02 0.0092 23.4 8.0 42 157-198 142-185 (320)
470 COG0677 WecC UDP-N-acetyl-D-ma 23.5 2.3E+02 0.005 27.7 6.2 46 253-299 84-134 (436)
471 PRK15409 bifunctional glyoxyla 23.4 70 0.0015 30.0 2.8 47 252-306 199-246 (323)
472 PRK06153 hypothetical protein; 23.4 97 0.0021 30.1 3.7 34 157-190 175-210 (393)
473 cd08291 ETR_like_1 2-enoyl thi 23.4 1.7E+02 0.0036 26.7 5.3 32 167-198 155-186 (324)
474 PF03807 F420_oxidored: NADP o 23.2 1.8E+02 0.0039 21.2 4.6 31 253-289 61-91 (96)
475 KOG0069 Glyoxylate/hydroxypyru 22.9 93 0.002 29.5 3.5 37 252-291 216-252 (336)
476 TIGR01751 crot-CoA-red crotony 22.9 3.9E+02 0.0084 25.3 7.9 43 156-198 188-232 (398)
477 cd08267 MDR1 Medium chain dehy 22.8 5.3E+02 0.012 22.8 9.0 39 157-196 143-183 (319)
478 cd08240 6_hydroxyhexanoate_dh_ 22.8 3.6E+02 0.0077 24.8 7.5 42 157-198 175-218 (350)
479 PRK08229 2-dehydropantoate 2-r 22.6 5.6E+02 0.012 23.6 8.8 37 252-293 72-108 (341)
480 PF01558 POR: Pyruvate ferredo 22.6 1.3E+02 0.0028 25.0 4.0 33 251-293 55-87 (173)
481 PRK13581 D-3-phosphoglycerate 22.5 69 0.0015 32.2 2.7 46 253-306 194-240 (526)
482 PLN02178 cinnamyl-alcohol dehy 22.5 3.2E+02 0.0069 25.9 7.2 33 253-293 242-274 (375)
483 COG4121 Uncharacterized conser 22.5 1.3E+02 0.0029 27.3 4.3 55 235-290 147-206 (252)
484 cd05282 ETR_like 2-enoyl thioe 22.4 3.2E+02 0.007 24.4 7.0 41 157-197 138-180 (323)
485 cd08274 MDR9 Medium chain dehy 22.4 5.9E+02 0.013 23.1 9.4 41 156-197 176-218 (350)
486 PLN02256 arogenate dehydrogena 22.2 5.4E+02 0.012 23.8 8.5 34 157-191 35-70 (304)
487 PF10781 DSRB: Dextransucrase 22.0 71 0.0015 22.0 1.8 22 284-305 41-62 (62)
488 PLN02712 arogenate dehydrogena 21.9 3.1E+02 0.0067 28.6 7.4 34 157-191 51-86 (667)
489 COG0111 SerA Phosphoglycerate 21.7 34 0.00075 32.2 0.3 29 158-188 142-173 (324)
490 TIGR01763 MalateDH_bact malate 21.7 4E+02 0.0086 24.6 7.5 33 159-191 2-36 (305)
491 PRK07533 enoyl-(acyl carrier p 21.5 5.4E+02 0.012 22.5 8.2 34 158-192 10-48 (258)
492 PRK09599 6-phosphogluconate de 21.4 3.4E+02 0.0074 24.8 7.0 37 160-197 2-40 (301)
493 PRK13403 ketol-acid reductoiso 21.4 4.1E+02 0.0089 25.2 7.4 36 252-292 70-106 (335)
494 COG1893 ApbA Ketopantoate redu 21.3 5.5E+02 0.012 23.8 8.3 38 251-293 65-102 (307)
495 PRK12439 NAD(P)H-dependent gly 21.1 6.8E+02 0.015 23.4 9.8 106 157-293 6-112 (341)
496 PRK05225 ketol-acid reductoiso 21.1 1.4E+02 0.0029 29.8 4.3 36 252-292 96-131 (487)
497 PF00899 ThiF: ThiF family; I 21.0 1.2E+02 0.0026 24.1 3.4 33 158-190 2-36 (135)
498 KOG1209 1-Acyl dihydroxyaceton 20.9 2.4E+02 0.0052 25.4 5.3 33 157-189 6-41 (289)
499 KOG1269 SAM-dependent methyltr 20.7 2.4E+02 0.0052 27.1 5.8 125 157-294 180-315 (364)
500 KOG0022 Alcohol dehydrogenase, 20.6 2.4E+02 0.0052 26.8 5.5 45 155-199 190-236 (375)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.96 E-value=1.7e-30 Score=225.82 Aligned_cols=173 Identities=52% Similarity=1.005 Sum_probs=139.9
Q ss_pred hhHHHHHHHhhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC
Q 021836 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (307)
Q Consensus 102 ~~~~~~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~ 181 (307)
++.||+.+.+||++++++.++|+|||++++..++.+++.||..+...... ......++||+|||.|++|..+|.+.+.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999988764321 1224679999999999999999999999
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcch
Q 021836 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQW 261 (307)
Q Consensus 182 ~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~ 261 (307)
+|..||+++.+++.|++.+... ..+..++++.+++ +|.|+.++||+||++|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ-----------------------~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQ-----------------------DFTPEEGKYDLIWIQW 130 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GG-----------------------G----TT-EEEEEEES
T ss_pred EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHh-----------------------hccCCCCcEeEEEehH
Confidence 9999999999999999887641 2456788899998 8888778999999999
Q ss_pred hhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCc-ccCCCC
Q 021836 262 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT-FLLSHS 305 (307)
Q Consensus 262 ~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~-~~d~~~ 305 (307)
++.|++|+++.++|++|...|+|||++++.||+..++. ++|++|
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~D 175 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEED 175 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTT
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCcc
Confidence 99999999999999999999999999999999999996 788876
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=6.5e-19 Score=157.67 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=81.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||||.++..++.... .+|+++|+|+.|++.|+++....+. ..+.+.+.+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~----------- 108 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAE----------- 108 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTT-----------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHH-----------
Confidence 3678999999999999997655433 2899999999999999998754322 24566666666
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
.+++++++||+|++++.+++++ +....+++++++|||||.+++.|...+.+
T Consensus 109 ------------~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 109 ------------DLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp ------------B--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred ------------HhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 7777789999999999999999 67889999999999999999999876665
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=2.7e-18 Score=153.02 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=94.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||||.++..+..... .+|+++|+|+.|++.++++....+.. .+.|+..+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~------~i~fv~~dAe------------- 111 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ------NVEFVVGDAE------------- 111 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc------ceEEEEechh-------------
Confidence 689999999999999997655442 38999999999999999998764432 2677777777
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+++++++||+|.+++.|++++ ++..+|++++|+|||||.+++.|...+.
T Consensus 112 ----------~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 112 ----------NLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred ----------hCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 8888999999999999999999 7799999999999999999999875543
No 4
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.72 E-value=9.2e-17 Score=150.01 Aligned_cols=106 Identities=21% Similarity=0.285 Sum_probs=83.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..+. +...+|+|+|+++.|++.|+.+....+. ...+.+.+.+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae-------------- 190 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAE-------------- 190 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHH--------------
Confidence 56799999999999999654 4444799999999999999977532111 123455555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++..+++||+|++..+++|+. +...+++++.++|||||.+++...
T Consensus 191 ---------~l~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 191 ---------KLADEGRKFDAVLSLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred ---------HhhhccCCCCEEEEhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 5544567899999999999999 558999999999999999999763
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.70 E-value=1.3e-16 Score=145.42 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=87.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..+..... .+|+|+|+|+.|++.|+++....... ....+.+.+.+.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~---~~~~i~~~~~d~~----------- 137 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS---CYKNIEWIEGDAT----------- 137 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc---cCCCeEEEEcccc-----------
Confidence 3578999999999999986554432 37999999999999998765311000 0123444455544
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
.+++++++||+|+++++++|+. +...++++++++|||||.|++.|...+..
T Consensus 138 ------------~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 138 ------------DLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred ------------cCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 5666678999999999999998 66899999999999999999998765543
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=1.4e-16 Score=121.06 Aligned_cols=95 Identities=28% Similarity=0.386 Sum_probs=76.8
Q ss_pred EEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeecc
Q 021836 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKK 241 (307)
Q Consensus 162 LDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~ 241 (307)
||+|||+|..+..+......+|+++|+++.+++.++++....+ ..+...+..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------~~~~~~d~~------------------- 52 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---------VSFRQGDAE------------------- 52 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---------EEEEESBTT-------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---------chheeehHH-------------------
Confidence 8999999999997665535589999999999999999875431 225566665
Q ss_pred CCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 242 GISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 242 d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+++++++||+|++..+++|+. +...+++++.++|||||+++|
T Consensus 53 ----~l~~~~~sfD~v~~~~~~~~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 53 ----DLPFPDNSFDVVFSNSVLHHLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----SSSS-TT-EEEEEEESHGGGSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ----hCccccccccccccccceeecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 6777789999999999999995 789999999999999999986
No 7
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.68 E-value=1.4e-16 Score=141.34 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=84.3
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+.+|||+|||+|.++..| ++....|+|+|+++.|++.|++.....+..+.....++.+.+.+.+
T Consensus 90 g~~ilDvGCGgGLLSepL-Arlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E--------------- 153 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPL-ARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE--------------- 153 (282)
T ss_pred CceEEEeccCccccchhh-HhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh---------------
Confidence 478999999999999974 5666679999999999999998865444433222233444444444
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. .+.||.|+|..+++|.. +++.+++.+.+.|||||.++++.-
T Consensus 154 --------~~---~~~fDaVvcsevleHV~--dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 154 --------GL---TGKFDAVVCSEVLEHVK--DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred --------hc---ccccceeeeHHHHHHHh--CHHHHHHHHHHHhCCCCceEeeeh
Confidence 33 35699999999999999 669999999999999999999764
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.68 E-value=3.3e-16 Score=123.54 Aligned_cols=109 Identities=24% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
|+.+|||+|||+|..+..++.. ...+|+++|+|+.|++.|++++...+. ..++.+++.++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~------------- 62 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAE------------- 62 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCH-------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccc-------------
Confidence 3578999999999999987763 334799999999999999998832211 233444444431
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcch-hhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... ..++||+|++.+ +++++.. ++...+++++.+.|+|||+|++.++
T Consensus 63 ---------~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 63 ---------FDPD-FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp ---------GGTT-TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ---------cCcc-cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 0222 246799999998 5554432 4678999999999999999999763
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.67 E-value=7.7e-16 Score=145.36 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||||||+|..+..+......+|+|+|+|+.|++.++++....+. ...+.+...|..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~------------- 178 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADAL------------- 178 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcc-------------
Confidence 46689999999999999976655545899999999999999987654322 123444444444
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+++++++||+|++..+++|+. +...++++++++|||||.|++.+.+
T Consensus 179 ----------~~~~~~~~FD~V~s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 179 ----------NQPFEDGQFDLVWSMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ----------cCCCCCCCccEEEECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5555678999999999999998 6689999999999999999998754
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.67 E-value=1.3e-15 Score=138.94 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=95.0
Q ss_pred CCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 021836 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP 208 (307)
Q Consensus 129 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~ 208 (307)
.+++-.+.....++..+- .+++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++...
T Consensus 32 ~~~~gg~~~~~~~l~~l~--------l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~------ 97 (263)
T PTZ00098 32 YISSGGIEATTKILSDIE--------LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD------ 97 (263)
T ss_pred CCCCCchHHHHHHHHhCC--------CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc------
Confidence 344444444455554331 346789999999999999876554434899999999999999987642
Q ss_pred ccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEE
Q 021836 209 DMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 209 ~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~l 288 (307)
...+.+...++. ..+.++++||+|++..+++|++..+...++++++++|||||.|
T Consensus 98 --~~~i~~~~~D~~-----------------------~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 98 --KNKIEFEANDIL-----------------------KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred --CCceEEEECCcc-----------------------cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 122344444433 3444568999999999999998667899999999999999999
Q ss_pred EEEeccCC
Q 021836 289 VLKENIAR 296 (307)
Q Consensus 289 ii~e~~~~ 296 (307)
++.+.+..
T Consensus 153 vi~d~~~~ 160 (263)
T PTZ00098 153 LITDYCAD 160 (263)
T ss_pred EEEEeccc
Confidence 99987543
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.65 E-value=4.8e-16 Score=136.99 Aligned_cols=104 Identities=21% Similarity=0.316 Sum_probs=84.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||-|.++..++..+ .+|+|+|+++.+++.|+.+..+.++ .+++.+..++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~e-------------- 116 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVE-------------- 116 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccc-------cccchhhhHH--------------
Confidence 67899999999999999866555 5699999999999999988765433 2345444444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++....++||+|+|..+++|+++ ...+++.|.+++||||.++++..
T Consensus 117 ---------dl~~~~~~FDvV~cmEVlEHv~d--p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 117 ---------DLASAGGQFDVVTCMEVLEHVPD--PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ---------HHHhcCCCccEEEEhhHHHccCC--HHHHHHHHHHHcCCCcEEEEecc
Confidence 44333479999999999999994 48899999999999999999764
No 12
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=2.9e-15 Score=135.37 Aligned_cols=112 Identities=13% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCceEEEEeccccHHHHHHHHh--cC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~--~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..++.. .. .+++++|+|+.|++.|++++...+. ...+.+.+.++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~----------- 119 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIR----------- 119 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChh-----------
Confidence 5679999999999999866542 22 3799999999999999998854322 113444444443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
+.+. ..+|+|+++.+++|+++++...+++++++.|||||.|++.|.+...+
T Consensus 120 ------------~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~ 170 (247)
T PRK15451 120 ------------DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED 170 (247)
T ss_pred ------------hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc
Confidence 4432 35999999999999987778899999999999999999999765544
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=2e-15 Score=131.83 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=83.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.++++....++. .+.+...++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~------~v~~~~~d~~-------------- 88 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD------NLHTAVVDLN-------------- 88 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC------cceEEecChh--------------
Confidence 457999999999999997666544 7999999999999999877543321 1334344443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+.+ +++||+|+++.+++|++.+++..+++++.++|+|||++++.+.+
T Consensus 89 ---------~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 89 ---------NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred ---------hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 3333 45799999999999988778899999999999999997765543
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.62 E-value=2.9e-15 Score=125.19 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=83.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|.++..++... ..+++|+|+|+.|++.|++++...+.. ++.+++.++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~------ni~~~~~d~~------------ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD------NIEFIQGDIE------------ 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST------TEEEEESBTT------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc------ccceEEeehh------------
Confidence 56899999999999999876443 238999999999999999987544321 3455555554
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++. .+ ++||+|++..+++|+. +...+++++.+.|++||.+++.+..
T Consensus 65 -----------~l~~~~~-~~~D~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 -----------DLPQELE-EKFDIIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -----------CGCGCSS-TTEEEEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----------ccccccC-CCeeEEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 343 22 7899999999999999 6689999999999999999998764
No 15
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=9.1e-15 Score=131.27 Aligned_cols=111 Identities=14% Similarity=0.259 Sum_probs=86.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~---~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..++... ..+++|+|+|+.|++.|++++...+. ...+.+...++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~----------- 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIR----------- 116 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChh-----------
Confidence 56799999999999998766653 22799999999999999988754321 112344445444
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+++ ..+|+|+++.+++|+++++...+++++++.|+|||.|++.|.+...
T Consensus 117 ------------~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 117 ------------HVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred ------------hCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 4432 3589999999999998878899999999999999999999976543
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=6.9e-15 Score=128.30 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=80.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.++. +|+++|+|+.|++.++++....+. .+.+...++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~-------------- 87 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN-------------- 87 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch--------------
Confidence 457999999999999997665544 799999999999999877643221 1223233332
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... +++||+|+++.+++|++.+++..+++++.+.|+|||++++.+.
T Consensus 88 ---------~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 88 ---------AAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred ---------hccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 2222 3579999999999999877889999999999999999776654
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.60 E-value=5.5e-15 Score=131.65 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=85.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..+..... .+|+++|+|+.|++.++++....+. ..+.++..+..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~----------- 106 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAM----------- 106 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechh-----------
Confidence 3568999999999999997655532 3799999999999999988754322 12344444444
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++.++++||+|++.++++|++ +...+++++.++|+|||.+++.+...+
T Consensus 107 ------------~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 107 ------------ELPFDDNSFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred ------------cCCCCCCCccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 4444567999999999999988 568899999999999999999886443
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=6.9e-15 Score=133.34 Aligned_cols=96 Identities=20% Similarity=0.322 Sum_probs=78.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..+..... .+|+|+|+|+.|++.|+++ .+.+...+++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~------------- 82 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVR------------- 82 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChh-------------
Confidence 568999999999999997666543 3799999999999999753 1345555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ..++||+|+++.+++|++ +...+++++++.|||||.+++.
T Consensus 83 ----------~~~-~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 83 ----------DWK-PKPDTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----------hCC-CCCCceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEE
Confidence 443 357899999999999998 5689999999999999999986
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=4.3e-15 Score=134.76 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=82.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|+++....+. ...+.+++.++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~-------------- 103 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQ-------------- 103 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHH--------------
Confidence 4579999999999999976655 45799999999999999988765432 123445555544
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++. ..+++||+|++..+++|+. +...+++++.++|||||.|++..
T Consensus 104 ---------~l~~~~~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 104 ---------DIAQHLETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ---------HHhhhcCCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 332 2357899999999999998 44789999999999999998764
No 20
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=133.13 Aligned_cols=165 Identities=32% Similarity=0.471 Sum_probs=125.5
Q ss_pred cchhHHHHHHHhhcccccccccc-cccCCCCCcc---cchhcHHHHHHHHHhc-cCCCcc-CCCCceEEEEeccccHHHH
Q 021836 100 EKKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSD-RFPNAR-NNQHLVALDCGSGIGRITK 173 (307)
Q Consensus 100 ~~~~~~~~~~~~yW~~~~~~~~~-~~~~y~~~~~---~~~~~~~~~l~~ll~~-~~~~~~-~~~~~~ILDiGcGtG~~t~ 173 (307)
.+...+|+++..||.++..+.++ ++++|...+. .++..+..++..+... +++... -..-...+|+|+|+|+++.
T Consensus 114 ~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k 193 (342)
T KOG3178|consen 114 MNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLK 193 (342)
T ss_pred hhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHH
Confidence 34457789999999999999999 7888887555 6677777777777652 222110 1123688999999999999
Q ss_pred HHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCc
Q 021836 174 NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGR 253 (307)
Q Consensus 174 ~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 253 (307)
.++. .+++|.+++.....+..+...+. .+. ..+....++ + .| +
T Consensus 194 ~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV--------~~v~gdmfq-----------------------~-~P---~ 236 (342)
T KOG3178|consen 194 NLLS-KYPHIKGINFDLPFVLAAAPYLA-PGV--------EHVAGDMFQ-----------------------D-TP---K 236 (342)
T ss_pred HHHH-hCCCCceeecCHHHHHhhhhhhc-CCc--------ceecccccc-----------------------c-CC---C
Confidence 9888 77779999999999888887763 211 112222222 4 32 3
Q ss_pred eeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCccc
Q 021836 254 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301 (307)
Q Consensus 254 fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~ 301 (307)
-|+||+.|++||++|++..++|++|++.|+|||.+++.|++.+.....
T Consensus 237 ~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~ 284 (342)
T KOG3178|consen 237 GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKF 284 (342)
T ss_pred cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCc
Confidence 469999999999999999999999999999999999999988764443
No 21
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.58 E-value=4.4e-14 Score=133.28 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=134.9
Q ss_pred CCceeEEeechhhHHHHHHHhhhccCCCCCCCCceeeccccCCCccccCHHHHHHHhhcCccccccch--------hHHH
Q 021836 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK--------TQWY 106 (307)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~--------~~~~ 106 (307)
....-++.+|+.|+.++...+.+... -+..+.+.+.|...+| .+++.++.+....... ....+ ..+-
T Consensus 76 ~~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~~-~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 76 DCDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPLNK-IDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCccc-cccceeEEEEEEecccc
Confidence 34556999999999999999887663 2337899999999999 6888888887653211 00000 0000
Q ss_pred --HHHHhhcccccc---cccccccCCCCCcccchh-cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC
Q 021836 107 --REGISYWEGVEA---SVDGVLGGFGNVNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (307)
Q Consensus 107 --~~~~~yW~~~~~---~~~~~~~~y~~~~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~ 180 (307)
-...+||..... .+...-+.| +...+. +++.++..+.. ....+|||+|||+|.++..++....
T Consensus 151 ~~~~~~~~~~~y~~~~l~i~~~pgvF---s~~~lD~gt~lLl~~l~~--------~~~g~VLDlGCG~G~ls~~la~~~p 219 (342)
T PRK09489 151 PVFDADKFWKEYQVDGLTVKTLPGVF---SRDGLDVGSQLLLSTLTP--------HTKGKVLDVGCGAGVLSAVLARHSP 219 (342)
T ss_pred CCCcccccceeeecCCEEEEeCCCCC---CCCCCCHHHHHHHHhccc--------cCCCeEEEeccCcCHHHHHHHHhCC
Confidence 011356653321 111111222 222222 33334433321 1345899999999999997766654
Q ss_pred C-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEc
Q 021836 181 N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWV 259 (307)
Q Consensus 181 ~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~ 259 (307)
. +|+++|+|+.|++.+++++...+.. ..++..+.. .. ..++||+|++
T Consensus 220 ~~~v~~vDis~~Al~~A~~nl~~n~l~-------~~~~~~D~~----------------------~~---~~~~fDlIvs 267 (342)
T PRK09489 220 KIRLTLSDVSAAALESSRATLAANGLE-------GEVFASNVF----------------------SD---IKGRFDMIIS 267 (342)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-------CEEEEcccc----------------------cc---cCCCccEEEE
Confidence 3 7999999999999999887654321 122222221 12 2568999999
Q ss_pred chhhhhCC---hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 260 QWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 260 ~~~l~~~~---~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+..+|+.. ......+++.+.+.|||||.|+++.|
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 98887532 23468999999999999999999877
No 22
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.58 E-value=2.4e-15 Score=117.08 Aligned_cols=96 Identities=24% Similarity=0.487 Sum_probs=74.0
Q ss_pred EEEEeccccHHHHHHHHhc---C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~---~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
|||+|||+|..+..+.... . .+++++|+|+.|++.++++....+ ..+++++.|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~-------------- 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADAR-------------- 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTT--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHh--------------
Confidence 7999999999999766554 2 589999999999999998874321 13455566555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcc-hhhhhCChhHHHHHHHHHHHcCCCCc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGG 286 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~~dl~~~l~~l~~~LkpGG 286 (307)
+++...++||+|++. .+++|++++++..+++++.++|+|||
T Consensus 60 ---------~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 60 ---------DLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---------CHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ---------HCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 444456799999995 45999999999999999999999998
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.1e-14 Score=128.86 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=93.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
+.+.+++||++||||.++..++.... .+|+.+|+|+.|+..++++..+.++.. .....+.+.|.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~---~~~~~w~~~dAE----- 169 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA---SSRVEWVEGDAE----- 169 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc---CCceEEEeCCcc-----
Confidence 34679999999999999998877532 379999999999999999886544421 234566677777
Q ss_pred ccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 228 NKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++++++++||..++.+.+.+++ ++++.+++++++|||||.|.+.|..
T Consensus 170 ------------------~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 170 ------------------DLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred ------------------cCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 8888899999999999999999 7799999999999999999998864
No 24
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.57 E-value=1.8e-14 Score=131.42 Aligned_cols=133 Identities=19% Similarity=0.291 Sum_probs=88.3
Q ss_pred CCCceEEEEeccccH----HHHHHHHhcC------CcEEEEeCCHHHHHHHHHHhCCC-CCCCcccccccceeecCcccc
Q 021836 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQGQ 224 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~----~t~~ll~~~~------~~v~~vD~s~~~l~~A~~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 224 (307)
.++.+|||+|||||. ++..+..... .+|+|+|+|+.|++.|++..-.. ...+.......+++...
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~---- 173 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRV---- 173 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC----
Confidence 356899999999996 3443333221 27999999999999998754210 00000001111122110
Q ss_pred cccccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 225 REKNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 225 ~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...+..+ +.+|+|.+.|+.... ++.++||+|+|.++++|+++++...+++++++.|+|||+|++...
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 00011111 356889999887543 346799999999999999988889999999999999999999644
No 25
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.57 E-value=2.3e-16 Score=122.11 Aligned_cols=98 Identities=24% Similarity=0.365 Sum_probs=59.5
Q ss_pred EEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeec
Q 021836 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAK 240 (307)
Q Consensus 162 LDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~ 240 (307)
||+|||+|..+..++..... +++++|+|+.|++.+++++...... ...... +..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~------~~~~~~-------------------~~~ 55 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND------NFERLR-------------------FDV 55 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE---------------------S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc------ceeEEE-------------------eec
Confidence 79999999999988777533 8999999999998888776543211 001111 111
Q ss_pred cCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEE
Q 021836 241 KGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 241 ~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~l 288 (307)
.+.. .. ...++||+|++.++++|+. ++..+++++++.|||||.|
T Consensus 56 ~~~~-~~-~~~~~fD~V~~~~vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 56 LDLF-DY-DPPESFDLVVASNVLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp SS----C-CC----SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred CChh-hc-ccccccceehhhhhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 1111 11 1125999999999999995 7899999999999999986
No 26
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.56 E-value=1.4e-14 Score=130.82 Aligned_cols=100 Identities=18% Similarity=0.340 Sum_probs=81.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+..+|||+|||+|.++..+... ..+|+++|+|+.|++.++++... ..+.+.+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~-------------- 95 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIE-------------- 95 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcc--------------
Confidence 4578999999999999865444 45799999999999999887531 234556655
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++..+++||+|+++.+++++. +...++.++.++|+|||.++++..
T Consensus 96 ---------~~~~~~~~fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 96 ---------SLPLATATFDLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ---------cCcCCCCcEEEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5555567899999999999888 668999999999999999999754
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.56 E-value=3.2e-14 Score=130.21 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=82.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|.++..++.++.-+|+|+.+|+.+.+.+++++...++.+ .+.+...|..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~-----~v~v~~~D~~------------ 122 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLED-----RVEVRLQDYR------------ 122 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSS-----TEEEEES-GG------------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCC-----ceEEEEeecc------------
Confidence 56889999999999999998877754489999999999999999987665432 3334344333
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
++ +.+||.|++..++.|+...+...+++++.+.|||||.+++-..+..
T Consensus 123 -----------~~---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 123 -----------DL---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp -----------G------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred -----------cc---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 44 3499999999999999988899999999999999999998655433
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=4.1e-14 Score=128.63 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=90.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|.+++.++..+..+|+|+++|+++.+.+++++...+.. ..+++.-.|..
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d~r------------ 132 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQDYR------------ 132 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecccc------------
Confidence 5689999999999999999876666458999999999999999988765543 22333333322
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
++ .+.||-|++...++|+.......+++++++.|+|||.+++.....++
T Consensus 133 -----------d~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 133 -----------DF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred -----------cc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 33 45699999999999999888999999999999999999987665544
No 29
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.55 E-value=3.3e-14 Score=118.62 Aligned_cols=111 Identities=27% Similarity=0.376 Sum_probs=81.8
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
....++..+.+. ..++.+|||+|||+|.++..+....+ +++++|+++.+++. ... ..
T Consensus 8 ~~~~~~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~~--------------~~ 64 (161)
T PF13489_consen 8 AYADLLERLLPR------LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RNV--------------VF 64 (161)
T ss_dssp CHHHHHHHHHTC------TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TTS--------------EE
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hhh--------------hh
Confidence 334556666542 23678999999999999997644444 89999999999988 110 01
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
...... ....++++||+|+|+.+++|++ +...+++.+.++|||||++++.+...
T Consensus 65 ~~~~~~-----------------------~~~~~~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 65 DNFDAQ-----------------------DPPFPDGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEECH-----------------------THHCHSSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhhhh-----------------------hhhccccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 111111 1122367999999999999999 67999999999999999999988754
No 30
>PRK05785 hypothetical protein; Provisional
Probab=99.54 E-value=5.9e-14 Score=125.21 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=73.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||||.++..+......+|+|+|+|+.|++.|+++. .+.+.+.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~-------------- 102 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFE-------------- 102 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechh--------------
Confidence 35799999999999999765553347999999999999998642 12345555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 285 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG 285 (307)
.+++++++||+|++.++++|++ ++..++++++++|||.
T Consensus 103 ---------~lp~~d~sfD~v~~~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 103 ---------ALPFRDKSFDVVMSSFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ---------hCCCCCCCEEEEEecChhhccC--CHHHHHHHHHHHhcCc
Confidence 5666788999999999999988 6689999999999994
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=6.8e-14 Score=124.27 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=82.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+|||+|||+|.++..++..+.. +++++|+++.+++.++++.. ..+.++..++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~------------- 90 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAE------------- 90 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchh-------------
Confidence 4578999999999999977666543 68999999999999988763 12445555555
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.++++||+|++.++++|+. +...++.++.++|+|||.+++.+.
T Consensus 91 ----------~~~~~~~~fD~vi~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 91 ----------KLPLEDSSFDLIVSNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred ----------hCCCCCCceeEEEEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4444567899999999999988 568899999999999999998754
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=8.1e-14 Score=137.16 Aligned_cols=108 Identities=21% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ...+.+...++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~-------------- 324 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCT-------------- 324 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcc--------------
Confidence 56799999999999998765554447999999999999998775321 112344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
..+.++++||+|+|..+++|+. +...++++++++|||||.|++.+.+..
T Consensus 325 ---------~~~~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 325 ---------KKTYPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred ---------cCCCCCCCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 3333467899999999999998 568999999999999999999886543
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=7.4e-14 Score=126.58 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=79.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..+..... .+|+++|+|+.|++.|++++. .+.+...++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~------------ 86 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIA------------ 86 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchh------------
Confidence 3568999999999999997665543 389999999999999988753 1334445544
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ..++||+|+++.+++|+. +...+++++.+.|||||.+++.
T Consensus 87 -----------~~~-~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 87 -----------SWQ-PPQALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -----------ccC-CCCCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 333 246899999999999998 5688999999999999999885
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=5.1e-14 Score=129.94 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=81.1
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+.+|||+|||+|..+..++..+. +|+++|+|+.+++.+++++...+. .+.+...++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~--------------- 177 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDIN--------------- 177 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechh---------------
Confidence 45999999999999997665554 799999999999999988754322 1233333333
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... +++||+|+++.+++|++.+++..+++++.+.|+|||++++...
T Consensus 178 --------~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 178 --------SASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred --------cccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2222 5789999999999999887899999999999999999776543
No 35
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.53 E-value=5.7e-14 Score=121.59 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=80.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.++||+|||.|+.+..++..++. |+++|.|+..++.+++.+...++ .++....|+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~-------------- 87 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN-------------- 87 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC--------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch--------------
Confidence 5689999999999999987777775 99999999999998877644322 2344455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.+ ++.||+|++..+++|+..+.+..+++++.+.++|||++++...
T Consensus 88 ---------~~~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 ---------DFDF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ---------CBS--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ---------hccc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 4443 4689999999999999998899999999999999999888544
No 36
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=6.7e-14 Score=131.16 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=81.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|..+..++..+...|+|+|+|+.|+..++......+ ....+.+...+++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-----~~~~i~~~~~d~e-------------- 182 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-----NDQRAHLLPLGIE-------------- 182 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-----CCCCeEEEeCCHH--------------
Confidence 467999999999999998777776689999999999986543321100 0123445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++. +++||+|+|..+++|.. +...+++++++.|+|||.|++...
T Consensus 183 ---------~lp~-~~~FD~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 183 ---------QLPA-LKAFDTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ---------HCCC-cCCcCEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 5544 67899999999999988 568899999999999999998654
No 37
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.51 E-value=3.9e-13 Score=118.10 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=80.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+.... ..+++|+|+|+.|++.|+++... +.+...++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~-----------~~~~~~d~~------------- 98 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN-----------INIIQGSLF------------- 98 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC-----------CcEEEeecc-------------
Confidence 56789999999999999765543 34799999999999999886531 233344433
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
. +.++++||+|+++.+++|++++++..+++++.+++ ++++++.|...+
T Consensus 99 ----------~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 99 ----------D-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ----------C-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 3 33577999999999999998778899999999997 578888876443
No 38
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.50 E-value=1.5e-13 Score=118.18 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=78.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+-.++||+|||.|.+|.. |+....+++++|+|+..++.|+++.... ..+.
T Consensus 43 ry~~alEvGCs~G~lT~~-LA~rCd~LlavDis~~Al~~Ar~Rl~~~--------~~V~--------------------- 92 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTER-LAPRCDRLLAVDISPRALARARERLAGL--------PHVE--------------------- 92 (201)
T ss_dssp SEEEEEEE--TTSHHHHH-HGGGEEEEEEEES-HHHHHHHHHHTTT---------SSEE---------------------
T ss_pred ccceeEecCCCccHHHHH-HHHhhCceEEEeCCHHHHHHHHHhcCCC--------CCeE---------------------
Confidence 457899999999999996 5666788999999999999999998642 2233
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+.++...+ +.++||+|+++.+++|+++ +++..++.++...|+|||.|++...
T Consensus 93 -~~~~dvp~~~--P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 93 -WIQADVPEFW--PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -EEES-TTT-----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -EEECcCCCCC--CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4444443343 3689999999999999985 6789999999999999999999653
No 39
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.50 E-value=1.5e-13 Score=121.84 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=81.1
Q ss_pred eEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||||||+|..+..++..+. .+|+++|+|+.+++.+++++...+. ...+.+...++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~---------------- 60 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSA---------------- 60 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccc----------------
Confidence 699999999999997766653 3799999999999999988754332 122344444432
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..+. .++||+|++..+++|+. +...++++++++|||||.+++.+.+
T Consensus 61 -------~~~~-~~~fD~I~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 61 -------KDPF-PDTYDLVFGFEVIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred -------cCCC-CCCCCEeehHHHHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 2222 45899999999999998 5689999999999999999998764
No 40
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=1.1e-13 Score=128.89 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++....... ....+.+...+++
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-----~~~~v~~~~~~ie-------------- 181 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-----NDKRAILEPLGIE-------------- 181 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-----cCCCeEEEECCHH--------------
Confidence 567999999999999987777766689999999999987543211000 0112334444444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++++ ..+||+|+|..+++|.. +...++++++++|||||.|++.+.+
T Consensus 182 ---------~lp~-~~~FD~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 182 ---------QLHE-LYAFDTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred ---------HCCC-CCCcCEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4433 35899999999999998 5588999999999999999986543
No 41
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.50 E-value=1.5e-13 Score=125.61 Aligned_cols=109 Identities=24% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++..... +|+++|+++.|++.|+++....+.. .+.+...+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~------~v~~~~~d~~----------- 138 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT------NVEFRLGEIE----------- 138 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC------CEEEEEcchh-----------
Confidence 36789999999999988754443322 6999999999999999887543321 2344444444
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.++.++++||+|+++.+++|.. +...+++++.++|||||.|++.+...
T Consensus 139 ------------~l~~~~~~fD~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 139 ------------ALPVADNSVDVIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ------------hCCCCCCceeEEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 4444567899999999998887 56889999999999999999987653
No 42
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.50 E-value=3.8e-13 Score=126.34 Aligned_cols=105 Identities=23% Similarity=0.165 Sum_probs=83.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.|++.|+++... ..+.+...+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e------------- 170 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAE------------- 170 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHH-------------
Confidence 567999999999999887655432 3799999999999999987531 12345555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
..+.++++||+|+++.+++|+. +...++++++++|||||.+++.+.+.
T Consensus 171 ----------~lp~~~~sFDvVIs~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~ 218 (340)
T PLN02490 171 ----------DLPFPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVH 218 (340)
T ss_pred ----------hCCCCCCceeEEEEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 4555567899999999999988 44789999999999999999876543
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.50 E-value=2.5e-13 Score=117.70 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=77.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|+++....+.. .+.+...+..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~------~i~~~~~d~~------------- 105 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK------NVTVVHGRAE------------- 105 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC------CEEEEeccHh-------------
Confidence 468999999999999996654433 38999999999999999887654321 1444455444
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. .++||+|+++.. . ++..+++.+++.|+|||.|++.+.
T Consensus 106 ----------~~~~-~~~fDlV~~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 106 ----------EFGQ-EEKFDVVTSRAV----A--SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ----------hCCC-CCCccEEEEccc----c--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 4433 568999998642 2 568899999999999999999865
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=3.8e-13 Score=132.43 Aligned_cols=111 Identities=24% Similarity=0.411 Sum_probs=85.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+.. ...+|+++|+++.|++.+++.... ...+.+++.++.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~-~~~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~-------------- 93 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAK-KAGQVIALDFIESVIKKNESINGH--------YKNVKFMCADVT-------------- 93 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHh-hCCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEeccc--------------
Confidence 456899999999999997554 456899999999999987654321 122334444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
...+++++++||+|+++++++|++++++..+++++.+.|||||++++.|++...
T Consensus 94 -------~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~ 147 (475)
T PLN02336 94 -------SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQ 147 (475)
T ss_pred -------ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Confidence 002334567999999999999999877899999999999999999999986543
No 45
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.48 E-value=4.1e-13 Score=118.70 Aligned_cols=118 Identities=11% Similarity=-0.047 Sum_probs=81.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||.|..+..++.+++ +|+|+|+|+.+++.+.+....... ..... ........+|
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~------------~~~~~----~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPT------------VTQQG----EFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcc------------eeccc----cceeeecCce
Confidence 457999999999999998776666 599999999999986543211000 00000 0000012346
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++.++|+........+.||.|+-..+++|++.+....+++.+.++|||||.+++.
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 6777766532211135799999999999999888899999999999999976654
No 46
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=9.6e-13 Score=120.11 Aligned_cols=212 Identities=20% Similarity=0.223 Sum_probs=137.0
Q ss_pred CCceeEEeechhhHHHHHHHhhhccCCCCCCCCceeeccccCCCccccCHHHHHHHhhcCccccc--cchhHHHH-----
Q 021836 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQ--EKKTQWYR----- 107 (307)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~--~~~~~~~~----- 107 (307)
....-|+-||+.++.++.+.+.+...- +....+.+.|...+| ..++.+|..+......... +....||.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 556778999999999999998877643 236789999999999 7888888887765432211 01111110
Q ss_pred --HHHhhcccc----cccccccccCCCCCcccchh-cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC
Q 021836 108 --EGISYWEGV----EASVDGVLGGFGNVNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (307)
Q Consensus 108 --~~~~yW~~~----~~~~~~~~~~y~~~~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~ 180 (307)
....+|... .-++...-|- ++...++ +++-+++.+-. ....+|||+|||.|.++..++...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGV---FS~~~lD~GS~lLl~~l~~--------~~~~~vlDlGCG~Gvlg~~la~~~p 181 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGV---FSRDKLDKGSRLLLETLPP--------DLGGKVLDLGCGYGVLGLVLAKKSP 181 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCC---CcCCCcChHHHHHHHhCCc--------cCCCcEEEeCCCccHHHHHHHHhCC
Confidence 011233322 2222211122 2233333 44444443332 2345999999999999997766665
Q ss_pred C-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEc
Q 021836 181 N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWV 259 (307)
Q Consensus 181 ~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~ 259 (307)
. +++.+|+|...++.+++++..++..+. .++..++. +.. .++||+|+|
T Consensus 182 ~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~------~v~~s~~~----------------------~~v---~~kfd~Iis 230 (300)
T COG2813 182 QAKLTLVDVNARAVESARKNLAANGVENT------EVWASNLY----------------------EPV---EGKFDLIIS 230 (300)
T ss_pred CCeEEEEecCHHHHHHHHHhHHHcCCCcc------EEEEeccc----------------------ccc---cccccEEEe
Confidence 3 899999999999999999876654321 22222221 122 349999999
Q ss_pred chhhhhCChhHH----HHHHHHHHHcCCCCcEEEEEec
Q 021836 260 QWCIGHLTDDDF----VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 260 ~~~l~~~~~~dl----~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+-.+|- ...-. .+++....+.|++||.|.|+-|
T Consensus 231 NPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 231 NPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 988753 22222 4899999999999999999887
No 47
>PRK08317 hypothetical protein; Provisional
Probab=99.47 E-value=4.7e-13 Score=118.67 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=82.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++.... .+++++|+++.+++.++++.... ...+.+...++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~----------- 79 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDAD----------- 79 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccc-----------
Confidence 4678999999999999997766542 37999999999999998873211 123344444443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+...++||+|++..+++|+. +...+++++.++|||||.+++.+.
T Consensus 80 ------------~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 ------------GLPFPDGSFDAVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ------------cCCCCCCCceEEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 3333467899999999999998 568899999999999999999874
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.46 E-value=4.7e-13 Score=133.51 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=83.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+...... +|+|+|+|+.|++.|+++....+ ....+.+.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~------------- 477 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAI------------- 477 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchH-------------
Confidence 4679999999999998866554433 89999999999999998764221 12233344433
Q ss_pred eeeeccCCcCCCC--CCCCceeeEEcchhhhhC-----------ChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISADFT--PETGRYDVIWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~-----------~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++ +++++||+|+++.++|++ ...++..+++++.++|||||.+++.|.+.+
T Consensus 478 ----------dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 478 ----------NLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred ----------hCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 332 346789999999998875 235678999999999999999999987544
No 49
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.45 E-value=9e-13 Score=117.21 Aligned_cols=110 Identities=20% Similarity=0.196 Sum_probs=85.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+++++|+++.+++.+++++...+. ...+.+...++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~------------ 113 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAE------------ 113 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccc------------
Confidence 567999999999999998776664 5899999999999999988753221 122344444443
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
....+.++||+|++..+++++. +...+++++.+.|+|||.+++.+...+
T Consensus 114 -----------~~~~~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 114 -----------ALPFPDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred -----------cCCCCCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 3333457899999999999988 668999999999999999999887543
No 50
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.44 E-value=2.2e-13 Score=117.91 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=83.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|.|+|||+|..|..+..+... .|+|+|.|+.|++.|+.+... .+|...|+.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-----------~~f~~aDl~------------ 85 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-----------ATFEEADLR------------ 85 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-----------CceecccHh------------
Confidence 36689999999999999966656554 899999999999999888643 455566665
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.|.+ ..+.|+|+++.+++.++ |-..+|.++...|.|||+|.+-
T Consensus 86 -----------~w~p-~~~~dllfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 86 -----------TWKP-EQPTDLLFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred -----------hcCC-CCccchhhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 6665 56899999999999999 6689999999999999999884
No 51
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.44 E-value=2e-13 Score=117.31 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=83.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
....+||+|||||..-.. .... ..+||++|+++.|-+.+.+++.+.... ....|...+.+
T Consensus 76 ~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~ge------------- 136 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVADGE------------- 136 (252)
T ss_pred CccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeechh-------------
Confidence 446789999999988663 3321 227999999999999999988765322 12224444444
Q ss_pred eeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.++ .++++||+|++..++.-.. +..+.|+++.++|+|||.+++.||+...
T Consensus 137 ----------~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 137 ----------NLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ----------cCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 444 3589999999999988777 6699999999999999999999997543
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=9.8e-13 Score=126.02 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=82.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||||||+|.++..++.....+|+++|+|+.|++.|+++.... .+.+...+..
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---------~v~~~~~D~~------------ 223 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---------PVEIRLQDYR------------ 223 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---------eEEEEECchh------------
Confidence 3467899999999999999766554448999999999999999887321 1233333332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+ +++||+|++..+++|+...+...+++++.++|||||.+++...
T Consensus 224 -----------~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 224 -----------DL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -----------hc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 22 4689999999999999877788999999999999999999764
No 53
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.43 E-value=3.1e-13 Score=117.78 Aligned_cols=151 Identities=18% Similarity=0.268 Sum_probs=84.4
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHH--HH-HHh----cCC---cEEEEeCCHHHHHHHHHHh-CCCCCC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITK--NL-LIR----YFN---EVDLLEPVSHFLDAARESL-APENHM 206 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~--~l-l~~----~~~---~v~~vD~s~~~l~~A~~~~-~~~~~~ 206 (307)
...+...+++..+......+..+||.+||+||.-.. .+ +.. ... +|+|+|+|+.+++.|++-. ....+.
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 344455555544433333467999999999994222 22 222 122 7999999999999998643 222222
Q ss_pred CcccccccceeecCcccccccccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC
Q 021836 207 APDMHKATNFFCVPLQGQREKNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 207 ~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp 284 (307)
+.......+++... .+...+.++ +..|+|.+.|+.. ..+..+.||+|+|.+++.|++.+....+++++++.|+|
T Consensus 92 ~~~~~~~~ryf~~~---~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 92 GLPPAYLRRYFTER---DGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp TS-HHHHHHHEEEE----CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred hhHHHHHHHhcccc---CCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 21122222333111 011222233 6789999999987 33346899999999999999999999999999999999
Q ss_pred CcEEEEEe
Q 021836 285 GGFFVLKE 292 (307)
Q Consensus 285 GG~lii~e 292 (307)
||+|++..
T Consensus 168 gG~L~lG~ 175 (196)
T PF01739_consen 168 GGYLFLGH 175 (196)
T ss_dssp EEEEEE-T
T ss_pred CCEEEEec
Confidence 99999954
No 54
>PRK06202 hypothetical protein; Provisional
Probab=99.42 E-value=7e-13 Score=118.48 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=75.9
Q ss_pred CCceEEEEeccccHHHHHHHHh----cC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~----~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.|+++.... .+.+...+..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~~~~--------- 121 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---------GVTFRQAVSD--------- 121 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---------CCeEEEEecc---------
Confidence 5679999999999998865432 22 27999999999999998875321 1223233222
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+...+++||+|+++.++||++++++..+++++.++++ |.+++.+.
T Consensus 122 --------------~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 122 --------------ELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred --------------cccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 22224678999999999999998778899999999998 55555443
No 55
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=1.8e-12 Score=114.05 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=85.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++..... +++++|+++.+++.++++.. . ...+.+...++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-------~~~i~~~~~d~~------------ 98 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-------PLNIEFIQADAE------------ 98 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-------CCCceEEecchh------------
Confidence 5689999999999999987777663 79999999999999988764 1 123445455444
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
+.+...++||+|+++.+++|+. +...+++++.+.|+|||.+++.+....
T Consensus 99 -----------~~~~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 99 -----------ALPFEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred -----------cCCCCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 3333457899999999999988 668999999999999999999886443
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.42 E-value=1.7e-12 Score=110.83 Aligned_cols=107 Identities=23% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+|||+|.++..++..... +|+++|+++.+++.+++++...+..+ +.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~------v~-------------------- 84 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN------VE-------------------- 84 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT------EE--------------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc------cc--------------------
Confidence 4678999999999999976665555 79999999999999999886543321 23
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCCh---hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~---~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...|..... .+++||+|+++-.++...+ .-+..+++.+.+.|+|||.|+++-+
T Consensus 85 --~~~~d~~~~~--~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 85 --VVQSDLFEAL--PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp --EEESSTTTTC--CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cccccccccc--cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3333433333 2589999999977654442 2368899999999999999977544
No 57
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.41 E-value=1.4e-12 Score=112.58 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=73.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+..... .+|+++|+|+.|++.++++....+.. .+.+.+.++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~------~i~~i~~d~~------------- 102 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN------NVEIVNGRAE------------- 102 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC------CeEEEecchh-------------
Confidence 367999999999999986554433 37999999999999998877543321 2444455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++. ..++||+|++.. ++ ++..+++.+.+.|+|||.+++..
T Consensus 103 ----------~~~-~~~~fD~I~s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 103 ----------DFQ-HEEQFDVITSRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----------hcc-ccCCccEEEehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 332 257899999865 32 45667889999999999999864
No 58
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.41 E-value=2.3e-12 Score=119.95 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=84.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|||||||+|.++..++..+.. +++++|. +.+++.+++++...+.. .+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-----~r--------------------- 200 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-----DR--------------------- 200 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-----ce---------------------
Confidence 35679999999999999988777654 7999997 78999999887654331 12
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
|++...|... ... ..+|+|++.+++|+++++....+++++++.|+|||.|++.|.+..
T Consensus 201 -v~~~~~d~~~-~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 201 -MRGIAVDIYK-ESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred -EEEEecCccC-CCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 3344444332 222 247999999999998877678999999999999999999997554
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.40 E-value=2.4e-11 Score=115.80 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=78.6
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|||+|||+|.++..++..... +|+++|.|+.+++.|++++..++... .. ++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~---~~----------------------~v 283 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA---LD----------------------RC 283 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc---Cc----------------------eE
Confidence 468999999999999977666654 89999999999999998875432110 01 12
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhh---CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~---~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++...|..... +.++||+|+|+-.+|. +++....++++.+.+.|+|||.|+++-|
T Consensus 284 ~~~~~D~l~~~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 284 EFMINNALSGV--EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEEEccccccC--CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 33333332233 2458999999866653 3333457899999999999999999854
No 60
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.40 E-value=2.8e-13 Score=118.18 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=78.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+-.++||+|||||..+.. +.....+++|+|+|.+|++.|.++--- -..++.+..
T Consensus 125 ~F~~~lDLGCGTGL~G~~-lR~~a~~ltGvDiS~nMl~kA~eKg~Y-----------D~L~~Aea~-------------- 178 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEA-LRDMADRLTGVDISENMLAKAHEKGLY-----------DTLYVAEAV-------------- 178 (287)
T ss_pred ccceeeecccCcCcccHh-HHHHHhhccCCchhHHHHHHHHhccch-----------HHHHHHHHH--------------
Confidence 467999999999999996 567777899999999999999876310 111122222
Q ss_pred eeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. ..+.+||+|++..++.|+. ++..++.-+...|+|||.|.|+--
T Consensus 179 ---------~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 179 ---------LFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred ---------HHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEec
Confidence 121 2367899999999999999 889999999999999999999643
No 61
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=1.6e-12 Score=114.37 Aligned_cols=149 Identities=19% Similarity=0.313 Sum_probs=105.7
Q ss_pred HHHHhhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC---cE
Q 021836 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---EV 183 (307)
Q Consensus 107 ~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v 183 (307)
..+..||+.....-. ......++++..-++.+++-... ...+|||+|||.|.....+++.... .|
T Consensus 33 ~~~~k~wD~fy~~~~-----------~rFfkdR~wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v 100 (264)
T KOG2361|consen 33 REASKYWDTFYKIHE-----------NRFFKDRNWLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKV 100 (264)
T ss_pred cchhhhhhhhhhhcc-----------ccccchhHHHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEE
Confidence 456689987543321 11224467777777766543222 2348999999999999988887655 69
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhh
Q 021836 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCI 263 (307)
Q Consensus 184 ~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l 263 (307)
.++|.|+.+++..+++.... ...+..+..|+...+ ..-+++.+++|.|++.++|
T Consensus 101 ~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~-------------------~~~~~~~~svD~it~IFvL 154 (264)
T KOG2361|consen 101 YACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPS-------------------LKEPPEEGSVDIITLIFVL 154 (264)
T ss_pred EEcCCChHHHHHHHhccccc-------hhhhcccceeccchh-------------------ccCCCCcCccceEEEEEEE
Confidence 99999999999998775432 223333344443000 0223457899999999999
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 264 GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 264 ~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.-++.+....++++++++|||||.+++.|-
T Consensus 155 SAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 155 SAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred eccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 999988899999999999999999999754
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=1.3e-12 Score=114.55 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCc-ccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~ 234 (307)
+..+|||+|||+|..+..++..... +|+++|+|+.|++.+++++...+. ..+.+.+.++ +
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~------------ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVE------------ 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHH------------
Confidence 4578999999999999976655433 799999999999999988754322 1234445444 2
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcchhhhhC------ChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~------~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. .++++||+|++++...+. .......+++++.++|||||.|++..
T Consensus 102 -----------~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 102 -----------VLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred -----------HHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 222 245789999987643221 11124788999999999999999864
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.37 E-value=7.7e-12 Score=99.78 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=73.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.++++....+.. .+.+...+..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~------------- 79 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS------NIVIVEGDAP------------- 79 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC------ceEEEecccc-------------
Confidence 456999999999999998766654 38999999999999999877543221 1233333322
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.......++||+|++..... ...++++.+.+.|+|||.|++.
T Consensus 80 ---------~~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 80 ---------EALEDSLPEPDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ---------ccChhhcCCCCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 11211245899999876432 4568899999999999999885
No 64
>PLN03075 nicotianamine synthase; Provisional
Probab=99.36 E-value=4.4e-12 Score=116.52 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=80.1
Q ss_pred CCceEEEEeccccHHHHHHHH-hcCC--cEEEEeCCHHHHHHHHHHhCC-CCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~-~~~~--~v~~vD~s~~~l~~A~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+|+|||||.|.++..++. ..+. +++++|+++.+++.|++.+.. .++ .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~--------------------- 176 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----S--------------------- 176 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----c---------------------
Confidence 568999999998865553444 3333 799999999999999988742 221 1
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+|+|...|+.. .....++||+|++. +++++++++..++++++.+.|+|||+|++.-
T Consensus 177 -~rV~F~~~Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 177 -KRMFFHTADVMD-VTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -CCcEEEECchhh-cccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 234455555443 22224789999999 9999977788999999999999999999864
No 65
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.36 E-value=6.4e-12 Score=111.27 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=79.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+. ...+.+...++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~-------------- 114 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLL-------------- 114 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChh--------------
Confidence 5689999999999999976554 44799999999999999988754321 112344444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.. +++||+|++..+++|++.+++..+++++.+.+++++++.+.
T Consensus 115 ---------~~---~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 115 ---------SL---CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---------hC---CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 33 26899999999999998777889999999999988777664
No 66
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.35 E-value=6.7e-12 Score=117.09 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+...+ .+|+++|+|+.|++.+++++......+ .....+.|...++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~-------------- 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLE-------------- 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchh--------------
Confidence 46799999999999999766554 479999999999999998875321100 00112233333332
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.+ +++||+|+|..+++|++++....+++.+.+ +.+||+++
T Consensus 208 ---------~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 208 ---------SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ---------hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 22 478999999999999987667778888875 45666644
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.34 E-value=6.6e-12 Score=112.03 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=79.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+... ..+++++|+++.+++.+++++...+. .+.+...+..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~-------------- 105 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL-------KIDYRQTTAE-------------- 105 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC-------ceEEEecCHH--------------
Confidence 5689999999999999876554 44699999999999999887643211 1233333332
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. ...++||+|++..+++|.. +...+++.+.+.|+|||.+++...
T Consensus 106 ---------~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 106 ---------ELAAEHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ---------HhhhhcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 221 1247899999999999988 558899999999999999998754
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.33 E-value=1.8e-11 Score=108.65 Aligned_cols=117 Identities=11% Similarity=-0.070 Sum_probs=81.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||.|..+..++..++ +|+|+|+|+.+++.+.+........ . ..+ ........+|
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~----~------~~~------~~~~~~~~~v 99 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQT----R------QSG------EFEHYQAGEI 99 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccc----c------ccc------cccccccCce
Confidence 457999999999999998776666 5999999999999875322110000 0 000 0000012346
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.++|+........+.||+|+-..+++|++.+....+++.+.++|+|||.+++
T Consensus 100 ~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 100 TIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 666776653322223689999999999999988899999999999999996544
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=9.2e-12 Score=109.42 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..+.... ..+|+++|+++.+++.|++++...+.. ..+.+...+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-----~~v~~~~~d~~----------- 134 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-----GVVEVYHGDGK----------- 134 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEECCcc-----------
Confidence 366899999999999998554433 247999999999999999887543321 12333333332
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+ +..++||+|++..++.+++ +++.+.|+|||.|++.-
T Consensus 135 -----------~~~-~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 -----------RGL-EKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred -----------cCC-ccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 223 2356899999998876655 35778999999998853
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.32 E-value=1.5e-11 Score=105.55 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+..... +|+++|+|+.|++.+++++...+. .+.+...+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~-------------- 76 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-------GLDVVMTDLF-------------- 76 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEcccc--------------
Confidence 456899999999999997665554 799999999999999988753211 1233333322
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChh-------------------HHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-------------------dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.. ..++||+|+++..+++.++. .+..+++++.+.|+|||.+++......
T Consensus 77 ---------~~--~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 77 ---------KG--VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred ---------cc--cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 22 14589999998776655421 146789999999999999999876443
No 71
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.32 E-value=1.4e-11 Score=109.41 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+..+|||+|||+|.++..++.... +|+++|+|+.|++.|++++...+. ...+.+...++.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~-------------- 122 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLE-------------- 122 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCch--------------
Confidence 567999999999999997766554 599999999999999988754321 012333333322
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
...++||+|++..+++|++++++..+++.+.+.+++++++.+
T Consensus 123 ------------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 123 ------------SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred ------------hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 125789999999999999888889999999998765555443
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.31 E-value=2.4e-11 Score=112.30 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=73.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+++.+++.|+++....+..+ .+.+...+..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~-----~~~~~~~~~~-------------- 219 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD-----RLQVKLIYLE-------------- 219 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc-----ceEEEecccc--------------
Confidence 568999999999999987655555589999999999999999875433211 1111111111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ...++||+|+++.... .+..++.++.+.|||||+|+++..
T Consensus 220 ---------~--~~~~~fDlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 220 ---------Q--PIEGKADVIVANILAE-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---------c--ccCCCceEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1 1256899999975432 457889999999999999999754
No 73
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.29 E-value=1.9e-11 Score=113.62 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=81.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.+++++.... . ...+.+++.|+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p----~~~v~~i~gD~~------------ 125 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-P----QLEVHGICADFT------------ 125 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-C----CceEEEEEEccc------------
Confidence 457899999999999998877753 479999999999999988864311 0 112233344443
Q ss_pred ceeeeccCCcCCCCCCC----CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPET----GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~----~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
....... +...++++..++++++.++...+|+++++.|+|||.|++.-+...+
T Consensus 126 ----------~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 126 ----------QPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred ----------chhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 1111111 1344566667899999888999999999999999999986554443
No 74
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.29 E-value=9.5e-12 Score=114.38 Aligned_cols=136 Identities=13% Similarity=0.128 Sum_probs=88.9
Q ss_pred CCceEEEEeccccHH--HHHH-HHhc---C--C-cEEEEeCCHHHHHHHHHHhC-CCCCCCcccccccceeecCcccccc
Q 021836 157 QHLVALDCGSGIGRI--TKNL-LIRY---F--N-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~--t~~l-l~~~---~--~-~v~~vD~s~~~l~~A~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
+..+||..||+||.- |+.+ +... . . +|+|+|+|+.+++.|++-.- ...+.+.......+++...-...+.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999942 2222 2221 1 1 69999999999999986532 1111111111122232210000001
Q ss_pred cccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 227 KNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 227 ~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+.++ +..|+|.+.|+...-.+..+.||+|+|.+++.|++++....+++++++.|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 122233 678999999997632223578999999999999998889999999999999999998853
No 75
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.29 E-value=2.3e-11 Score=109.17 Aligned_cols=127 Identities=15% Similarity=0.169 Sum_probs=90.7
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
..|+..+... .++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++. ..+.+
T Consensus 57 g~~L~~l~~~-------~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-----~~i~~ 124 (234)
T PLN02781 57 GLFLSMLVKI-------MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-----HKINF 124 (234)
T ss_pred HHHHHHHHHH-------hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEE
Confidence 4566555542 2567999999999999887665543 38999999999999999998765442 23344
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCC-----CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+.. ..+. .+.++||+|++.. .++....++..+.+.|+|||++++
T Consensus 125 ~~gda~----------------------~~L~~l~~~~~~~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~- 176 (234)
T PLN02781 125 IQSDAL----------------------SALDQLLNNDPKPEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAF- 176 (234)
T ss_pred EEccHH----------------------HHHHHHHhCCCCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEE-
Confidence 444432 1111 1146899999843 234667889999999999997555
Q ss_pred eccCCCCcccCCCC
Q 021836 292 ENIARSGTFLLSHS 305 (307)
Q Consensus 292 e~~~~~~~~~d~~~ 305 (307)
||+...|.+.|+++
T Consensus 177 dn~l~~G~v~~~~~ 190 (234)
T PLN02781 177 DNTLWFGFVAQEED 190 (234)
T ss_pred EcCCcCCeecCccc
Confidence 99999999888753
No 76
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.28 E-value=2.2e-11 Score=111.31 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=79.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH--HhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE--SLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||||||.|+.+..++..+...|+|+|++..+.-..+. ++... .....+....++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-------~~~~~~lplgvE------------ 175 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-------DPPVFELPLGVE------------ 175 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-------CccEEEcCcchh------------
Confidence 578999999999999999998999899999999987766442 22110 111112223444
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+++. .+.||+|+|..+|.|..++ ...|+.++..|+|||.+++-..+
T Consensus 176 -----------~Lp~-~~~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 176 -----------DLPN-LGAFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred -----------hccc-cCCcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEee
Confidence 5554 6789999999999999844 88999999999999999985444
No 77
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.28 E-value=2.9e-11 Score=110.71 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+..+|||+|||+|.++..+..... ..++|+|+|+.|++.|+++.. .+.+...+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~-----------~~~~~~~d~~---------- 143 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP-----------QVTFCVASSH---------- 143 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC-----------CCeEEEeecc----------
Confidence 456899999999999997655432 258999999999999987642 2344455554
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+++++++||+|++.+. ...++++.++|||||+|+++..
T Consensus 144 -------------~lp~~~~sfD~I~~~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 144 -------------RLPFADQSLDAIIRIYA---------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -------------cCCCcCCceeEEEEecC---------CCCHHHHHhhccCCCEEEEEeC
Confidence 55556789999998654 1235788999999999998753
No 78
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.28 E-value=4.6e-11 Score=103.28 Aligned_cols=100 Identities=18% Similarity=0.294 Sum_probs=72.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..... +|+++|+++.+++.+++++...+.. .+.+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~------~i~~------------------- 85 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG------NIDI------------------- 85 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC------CeEE-------------------
Confidence 5679999999999999977665543 8999999999999999887533211 1223
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+.+....+ .++||+|++..... .+..+++.+.+.|+|||.+++..
T Consensus 86 ---~~~d~~~~~---~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 86 ---IPGEAPIEL---PGKADAIFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ---EecCchhhc---CcCCCEEEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 222221112 35799999876532 35678899999999999998854
No 79
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.27 E-value=2.8e-11 Score=110.06 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=100.1
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccH----HHHHHHHhcC-----C-cEEEEeCCHHHHHHHHHHhCC--CCCCC
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP--ENHMA 207 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~----~t~~ll~~~~-----~-~v~~vD~s~~~l~~A~~~~~~--~~~~~ 207 (307)
.+-..+++.+...... ...+||.+||+||. ++..+..... . +|+++|+|..+++.|+.-.-. ....+
T Consensus 80 ~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 80 ELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 3444455544332212 47899999999993 3332222221 2 799999999999999854322 11122
Q ss_pred cccccccceeecCcccccccccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC
Q 021836 208 PDMHKATNFFCVPLQGQREKNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 285 (307)
Q Consensus 208 ~~~~~~~~~~~~d~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG 285 (307)
.......+++.... +...+.++ +..|.|.+.|+..+.. ..+.||+|+|.+++.+++.+....++.+++..|+||
T Consensus 159 ~~~~~~~ryF~~~~---~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 159 LPPELLRRYFERGG---DGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred CCHHHHhhhEeecC---CCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 22222233433221 11234443 7789999999987765 467899999999999999999999999999999999
Q ss_pred cEEEEEec
Q 021836 286 GFFVLKEN 293 (307)
Q Consensus 286 G~lii~e~ 293 (307)
|+|++...
T Consensus 235 G~LflG~s 242 (268)
T COG1352 235 GLLFLGHS 242 (268)
T ss_pred CEEEEccC
Confidence 99999543
No 80
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.27 E-value=3.3e-11 Score=106.63 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=80.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||+|||+|.++..+..... +++++|+++.+++.+++++...+. ..+.+...++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~-------------- 103 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVE-------------- 103 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHH--------------
Confidence 467999999999999987655444 699999999999999988754321 02334444433
Q ss_pred eeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+... +++||+|++..+++|+. +...+++.+.+.|+|||.+++...
T Consensus 104 ---------~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 104 ---------DLAEKGAKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ---------HhhcCCCCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 23222 47899999999999998 568899999999999999988754
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.26 E-value=6e-11 Score=104.90 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.++.+|||+|||+|..+..+ +.... +|+++|+++.+++.|++++...+.. .+.+...+..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~l-a~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~------~v~~~~~d~~---------- 138 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVL-AEIVGRDGLVVSIERIPELAEKAERRLRKLGLD------NVIVIVGDGT---------- 138 (215)
T ss_pred CCcCEEEEECCCccHHHHHH-HHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------CeEEEECCcc----------
Confidence 46789999999999999854 44433 4999999999999999988654321 2333333332
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+ ...++||+|++.....++. +.+.+.|+|||.|++.-
T Consensus 139 ------------~~~-~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 ------------QGW-EPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred ------------cCC-cccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 222 2246899999876554433 45778899999998853
No 82
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.26 E-value=2.2e-11 Score=107.18 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=80.0
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
++..++..+.... .....++|+|||+|..++ .++.++.+|+++|+|+.|++.|++.... .+
T Consensus 19 YPtdw~~~ia~~~------~~h~~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~------------~y 79 (261)
T KOG3010|consen 19 YPTDWFKKIASRT------EGHRLAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPV------------TY 79 (261)
T ss_pred CcHHHHHHHHhhC------CCcceEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCc------------cc
Confidence 3456777766521 123489999999996666 6788899999999999999999876532 11
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
...+.. ... +-..++...+++.|+|+|..++|+++ +..+++.++++||+.|-++.+
T Consensus 80 ~~t~~~---------------ms~-~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 80 CHTPST---------------MSS-DEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccCCcc---------------ccc-cccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 111111 000 00013333378999999999998775 578999999999988744443
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=3.1e-11 Score=106.68 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=70.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||||||+|..+..+..... .+|+++|+++.+++.+++++...+.. ++.+...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~------~v~~~~g-------------- 134 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD------NVEVIVG-------------- 134 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CeEEEEC--------------
Confidence 4678999999999999985443322 38999999999999999988644321 2333333
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
|....+ +..++||+|++.....++. ..+.+.|||||.|++..
T Consensus 135 --------d~~~~~-~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 --------DGTLGY-EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred --------CcccCC-CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 332233 2357899999877654332 35677899999998854
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.25 E-value=1.6e-11 Score=97.36 Aligned_cols=106 Identities=23% Similarity=0.266 Sum_probs=76.5
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.+|||+|||+|.++..++..+..+++++|+++..++.++.++...+. ...++++..|+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~---------------- 60 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDAR---------------- 60 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHH----------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchh----------------
Confidence 58999999999999987766645899999999999999988765432 123445555543
Q ss_pred eccCCcCCCC--CCCCceeeEEcchhhhhCC------hhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 239 AKKGISADFT--PETGRYDVIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 239 ~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~------~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+.. ...++||+|+++-.+.... ......+++++.+.|+|||.+++.-
T Consensus 61 -------~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 61 -------DLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -------HHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------hchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 221 2468999999986644321 1235788999999999999998864
No 85
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.25 E-value=2.2e-11 Score=106.04 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=75.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||||||+|.++..++..... +|+|+|+++.|++.|++++...++. ++.+...++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~------ni~~i~~d~~------------- 76 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK------NLHVLCGDAN------------- 76 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC------CEEEEccCHH-------------
Confidence 3468999999999999987766554 7999999999999998887543321 2444444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++...+ .+++++|.|++++...+.... ....+++.++++|||||.|++..
T Consensus 77 ------~~~~~~-~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 77 ------ELLDKF-FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ------HHHHhh-CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 000011 234689999987653222110 12578999999999999998853
No 86
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.6e-11 Score=107.55 Aligned_cols=103 Identities=24% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.+++..+.-+..+++|+|++|..++.|++++..++... ....-....
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-----~~~~~~~~~--------------- 221 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-----LVQAKGFLL--------------- 221 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----hhhcccccc---------------
Confidence 678999999999999997666677789999999999999999986654421 000000000
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+..++||+|+++-. -+ -+..+...+.+.|||||+++++--
T Consensus 222 ---------~~~~~~~~~DvIVANIL-A~----vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 222 ---------LEVPENGPFDVIVANIL-AE----VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ---------hhhcccCcccEEEehhh-HH----HHHHHHHHHHHHcCCCceEEEEee
Confidence 11112469999999752 22 467889999999999999999753
No 87
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.23 E-value=7.1e-11 Score=106.92 Aligned_cols=96 Identities=21% Similarity=0.168 Sum_probs=70.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+...+..+|+++|+|+.+++.|++++...+.. .. +
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-----~~----------------------~ 171 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-----LN----------------------V 171 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----ce----------------------E
Confidence 56899999999999998654444446999999999999999887543220 00 0
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+...+.+||+|+++... ..+..+++++.+.|||||.+++...
T Consensus 172 ---------~~~~~~~~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 172 ---------YLPQGDLKADVIVANILA-----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ---------EEccCCCCcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 010012279999986432 2457789999999999999999764
No 88
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.20 E-value=4.2e-11 Score=112.40 Aligned_cols=140 Identities=16% Similarity=0.297 Sum_probs=84.3
Q ss_pred hhcHHHHHHHHHhccCCC--ccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccc
Q 021836 135 IKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~--~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~ 212 (307)
++....++..++-..... ....++.+|||+|||-|.............++|+|++...++.|++++....-.......
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~ 117 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQY 117 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence 344455665544322211 011267899999999888777677777889999999999999999988321100000000
Q ss_pred ccceeecCcccccccccccCccceeeeccCCc-----CCCCCCCCceeeEEcchhhhhC--ChhHHHHHHHHHHHcCCCC
Q 021836 213 ATNFFCVPLQGQREKNKKVGSKKVKIAKKGIS-----ADFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPG 285 (307)
Q Consensus 213 ~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~-----~~~~~~~~~fDlIi~~~~l~~~--~~~dl~~~l~~l~~~LkpG 285 (307)
...|. ..|..+|.. ..+.+...+||+|-|.+++||+ +.+....+|+++...|+||
T Consensus 118 ~~~f~------------------a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 118 RFDFI------------------AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp EECCE------------------EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred cccch------------------hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 11111 123333222 1222224699999999999996 4445788999999999999
Q ss_pred cEEEEEe
Q 021836 286 GFFVLKE 292 (307)
Q Consensus 286 G~lii~e 292 (307)
|+||.+-
T Consensus 180 G~FIgT~ 186 (331)
T PF03291_consen 180 GYFIGTT 186 (331)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999863
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.20 E-value=1.4e-10 Score=87.61 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=75.0
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeee
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIA 239 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~ 239 (307)
+|+|+|||+|..+..++.....+++++|+++.+++.+++..... ....+.++..+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----------------- 57 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL------LADNVEVLKGDAE----------------- 57 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc------cccceEEEEcChh-----------------
Confidence 48999999999999766534458999999999999988532211 1223444444443
Q ss_pred ccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 240 KKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 240 ~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.. ...++||+|++..+++++ ......+++.+.+.|+|||.+++.
T Consensus 58 ------~~~~~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 58 ------ELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ------hhccccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 222 135689999999998774 336789999999999999999875
No 90
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.20 E-value=7.6e-11 Score=105.57 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=79.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||+|||+|.++..+..+.. .++++||+.+.+.+.|+++..-.++ ..++.+++.|+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~------------- 105 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIK------------- 105 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHH-------------
Confidence 468999999999999996544434 3899999999999999998865443 234455555554
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchh----------------hhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWC----------------IGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~----------------l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..... ...+||+|+|+-. -+|...-+++++++.+.++|||||.++++-
T Consensus 106 ---------~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 106 ---------EFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred ---------HhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 22211 2347999998732 223333457899999999999999999864
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.20 E-value=1.5e-10 Score=102.08 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=71.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+.. ++....+|+++|+++.+++.+++++...++. .+.+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~-la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~------~v~~------------------- 130 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAV-LAHLVRRVFSVERIKTLQWEAKRRLKQLGLH------NVSV------------------- 130 (212)
T ss_pred CCCCEEEEECCCccHHHHH-HHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC------ceEE-------------------
Confidence 4678999999999999984 4555568999999999999999887654321 1233
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...|....+. ..++||+|++...+.++ .+.+.+.|+|||.+++.-.
T Consensus 131 ---~~~d~~~~~~-~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 131 ---RHGDGWKGWP-AYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---EECCcccCCC-cCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 3333222332 24689999998765443 3457789999999988643
No 92
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=1.4e-10 Score=103.18 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=73.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+......+++++|+++.+++.+++++...+. .+.+...++.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-------~~~~~~~d~~-------------- 94 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-------DVDVRRGDWA-------------- 94 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-------eeEEEECchh--------------
Confidence 5679999999999999976554444899999999999999987743211 1223333332
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-------------------hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-------------------~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.. ...++||+|+++-...... ...+..+++++.+.|||||.+++...
T Consensus 95 ---------~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 95 ---------RA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ---------hh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22 1356899999974322111 01256788999999999999998644
No 93
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.17 E-value=7.3e-11 Score=99.82 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=77.2
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||+|||+|.+...++...++ .++|+|.|+.+++.|+..++..++.| .|+|
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n---------------------------~I~f 122 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN---------------------------EIRF 122 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc---------------------------ceeE
Confidence 9999999999999998888887 59999999999999988776544322 2556
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhC------ChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~------~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.|+... ....++||+|.--.++.-+ ....+.-.+..+.++|+|||+|+|+.-
T Consensus 123 ~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 123 QQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred EEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 66666543 2346789988854332211 111235568889999999999999753
No 94
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.17 E-value=1.3e-10 Score=107.30 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.+++..+..+..+|+++|+++.+++.|++++..+++.. .+.+ ....
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-----~~~v--~~~~-------------- 219 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-----RIEV--SLSE-------------- 219 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-----CEEE--SCTS--------------
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-----eEEE--EEec--------------
Confidence 567999999999999996555566689999999999999999987654421 1111 0111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. ..++||+|+++-.. +-+..++..+.+.|+|||+|+++-.
T Consensus 220 ---------~~--~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 220 ---------DL--VEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ---------CT--CCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred ---------cc--ccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 22 24799999987543 2567888999999999999999743
No 95
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.15 E-value=4.4e-10 Score=103.65 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++. ..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-----~~---------------------- 173 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-----DR---------------------- 173 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----Cc----------------------
Confidence 3468999999999999976655443 7999999999999999987543321 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh------h-------hhCCh----------hHHHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC------I-------GHLTD----------DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~------l-------~~~~~----------~dl~~~l~~l~~~LkpGG~lii 290 (307)
|++.+.|....+ +.++||+|+++-. + +|-+. .....+++.+.+.|+|||.+++
T Consensus 174 i~~~~~D~~~~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 174 VTLIQSDLFAAL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred EEEEECchhhcc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 334444433233 2457999998621 1 11110 1246789999999999999987
No 96
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.15 E-value=5.1e-10 Score=100.57 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=79.2
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
+..++..++.... ..+.+|||+|||+|..+..++..... +++++|+++.+++.+++++...+.. .+.+
T Consensus 73 ~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~------~~~~ 141 (251)
T TIGR03534 73 TEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD------NVTF 141 (251)
T ss_pred hHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------eEEE
Confidence 3455555554321 13468999999999999987665443 7999999999999999887543221 1333
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhh------hhCChh------------------HHH
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCI------GHLTDD------------------DFV 272 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l------~~~~~~------------------dl~ 272 (307)
...+. ...+ +.++||+|+++..+ +++... ...
T Consensus 142 ~~~d~----------------------~~~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 197 (251)
T TIGR03534 142 LQSDW----------------------FEPL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYR 197 (251)
T ss_pred EECch----------------------hccC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHH
Confidence 33333 2222 35789999985322 111111 134
Q ss_pred HHHHHHHHcCCCCcEEEEEe
Q 021836 273 SFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 273 ~~l~~l~~~LkpGG~lii~e 292 (307)
.+++.+.+.|+|||.+++.-
T Consensus 198 ~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 198 RIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHHHhcccCCEEEEEE
Confidence 78899999999999998853
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.15 E-value=2.1e-10 Score=100.12 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++++...+.. ..+.+...+..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-----~~v~~~~~d~~---------- 102 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-----NNIVLIKGEAP---------- 102 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CCeEEEEechh----------
Confidence 3467899999999999999765443 237999999999999999887544321 12333333332
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
..+....++||+|++... ..++..+++.+.+.|+|||.+++
T Consensus 103 ------------~~l~~~~~~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 103 ------------EILFTINEKFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred ------------hhHhhcCCCCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 111112368999998542 22568899999999999999987
No 98
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.8e-10 Score=97.75 Aligned_cols=101 Identities=23% Similarity=0.272 Sum_probs=80.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
+.++.+|||||||+|+.+. ++++...+|+.+|..+...+.|++++...++.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aA-vla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n--------------------------- 121 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAA-VLARLVGRVVSIERIEELAEQARRNLETLGYEN--------------------------- 121 (209)
T ss_pred CCCCCeEEEECCCchHHHH-HHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc---------------------------
Confidence 4578999999999999999 788888899999999999999999987655432
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|.+.+.|....++. ..+||.|+.......++ +.+.+.|||||.+++...
T Consensus 122 -V~v~~gDG~~G~~~-~aPyD~I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 122 -VTVRHGDGSKGWPE-EAPYDRIIVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -eEEEECCcccCCCC-CCCcCEEEEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 44555555556653 57999999988765555 347778999999998654
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.14 E-value=5.5e-10 Score=97.28 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=71.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+.. .+.++..+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~------~v~~~~~d~~------------ 100 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK------NVEVIEGSAP------------ 100 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------CeEEEECchH------------
Confidence 3668999999999999997654432 37999999999999999887543321 2334444332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+......+|.|+... ...+..+++++.+.|+|||.|++...
T Consensus 101 ----------~~~~~~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 101 ----------ECLAQLAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----------HHHhhCCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 11111122356665432 12567889999999999999998754
No 100
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.14 E-value=3.6e-10 Score=101.15 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=76.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
...++||||+|.|.+|.. ++..+++|+++|.|+.|....+++- |...+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~-l~~~f~~v~aTE~S~~Mr~rL~~kg---------------~~vl~~~-------------- 143 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTER-LAPLFKEVYATEASPPMRWRLSKKG---------------FTVLDID-------------- 143 (265)
T ss_pred cCCceEEecCCCcHHHHH-HHhhcceEEeecCCHHHHHHHHhCC---------------CeEEehh--------------
Confidence 457899999999999996 5788989999999999988776542 2233333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++...+.+||+|.|-+++....+| ..+|+.+++.|+|+|.++++
T Consensus 144 ---------~w~~~~~~fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 144 ---------DWQQTDFKFDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ---------hhhccCCceEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEE
Confidence 343335689999999999998844 89999999999999999985
No 101
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.14 E-value=4.5e-10 Score=99.09 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=96.1
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccc
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
+..-.||..++. ...+.+|||||.+.|+.+.+++.... .+++.+|.++++.+.|++++.+.++.+ .
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~-----~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD-----R 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc-----e
Confidence 556677777775 23568999999999999998777666 289999999999999999998776642 1
Q ss_pred cceee-cCcccccccccccCccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 214 TNFFC-VPLQGQREKNKKVGSKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 214 ~~~~~-~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+. .+.. ..+. ...++||+||.-. .+.+...++..+.++|+|||++++
T Consensus 113 i~~~~~gdal----------------------~~l~~~~~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~- 164 (219)
T COG4122 113 IELLLGGDAL----------------------DVLSRLLDGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVA- 164 (219)
T ss_pred EEEEecCcHH----------------------HHHHhccCCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEE-
Confidence 22222 1211 1121 2368999999743 355678999999999999998766
Q ss_pred eccCCCCcccCC
Q 021836 292 ENIARSGTFLLS 303 (307)
Q Consensus 292 e~~~~~~~~~d~ 303 (307)
||+...|.+.++
T Consensus 165 DNvl~~G~v~~~ 176 (219)
T COG4122 165 DNVLFGGRVADP 176 (219)
T ss_pred eecccCCccCCc
Confidence 999999988876
No 102
>PRK00811 spermidine synthase; Provisional
Probab=99.14 E-value=2.6e-10 Score=105.13 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||+||||+|..+..+++. ...+|+++|+++.+++.|++.+...+... ... .+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d----------------------~r 132 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDD----------------------PR 132 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccC----------------------Cc
Confidence 4579999999999999987765 34589999999999999998875321100 001 22
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|....+....++||+|++...-.+..... ..++++.+++.|+|||++++.
T Consensus 133 v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 133 VELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred eEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 33444433222222357899999854322211111 278899999999999998873
No 103
>PLN02476 O-methyltransferase
Probab=99.13 E-value=4.4e-10 Score=102.77 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=92.6
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
....++..+... .++.+|||||+|+|..+.+++.... .+|+.+|.++++.+.|+++++..++. ..+
T Consensus 105 ~~g~lL~~L~~~-------~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I 172 (278)
T PLN02476 105 DQAQLLAMLVQI-------LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKV 172 (278)
T ss_pred HHHHHHHHHHHh-------cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcE
Confidence 334556655542 2567999999999999997665432 27999999999999999999776542 234
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++...+.. +....+. ...++||+||.-. .+.....+++.+.+.|+|||.+++ |
T Consensus 173 ~li~GdA~-------------------e~L~~l~~~~~~~~FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~-D 227 (278)
T PLN02476 173 NVKHGLAA-------------------ESLKSMIQNGEGSSYDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVM-D 227 (278)
T ss_pred EEEEcCHH-------------------HHHHHHHhcccCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEE-e
Confidence 44444432 0000110 1136899999753 245678899999999999999666 9
Q ss_pred ccCCCCcccCCC
Q 021836 293 NIARSGTFLLSH 304 (307)
Q Consensus 293 ~~~~~~~~~d~~ 304 (307)
|+...|.+.|+.
T Consensus 228 NvL~~G~V~d~~ 239 (278)
T PLN02476 228 NVLWHGRVADPL 239 (278)
T ss_pred cCccCCcccCcc
Confidence 999999988764
No 104
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.13 E-value=2.7e-10 Score=102.33 Aligned_cols=103 Identities=21% Similarity=0.377 Sum_probs=80.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|+|||+|+|.++..++..++. +++..|. |..++.+++ . .+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~---------------------------------~r 144 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-A---------------------------------DR 144 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-T---------------------------------TT
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-c---------------------------------cc
Confidence 4568999999999999998888877 8999998 888888876 1 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC--cEEEEEeccCCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARSG 298 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG--G~lii~e~~~~~~ 298 (307)
|++..+|....+ +. +|+|++.+++|++++++...+|+++++.|+|| |.|+|.|.+.++.
T Consensus 145 v~~~~gd~f~~~---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 145 VEFVPGDFFDPL---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEEES-TTTCC---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred cccccccHHhhh---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 334444443232 33 99999999999999999999999999999999 9999999976554
No 105
>PRK04266 fibrillarin; Provisional
Probab=99.12 E-value=5e-10 Score=99.92 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=68.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+|||+|||+|.++..+..... .+|+++|+++.|++.+.+++... .++.++..+..
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~~D~~----------- 130 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------KNIIPILADAR----------- 130 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEECCCC-----------
Confidence 45778999999999999997554432 37999999999999887665321 12233333332
Q ss_pred cceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~lii~ 291 (307)
.. .....++||+|++. +.+++ ...+++++.+.|||||.|++.
T Consensus 131 -----------~~~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 131 -----------KPERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -----------CcchhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 10 00113569999853 32222 345689999999999999993
No 106
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.12 E-value=7.9e-10 Score=98.32 Aligned_cols=118 Identities=11% Similarity=-0.045 Sum_probs=85.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+||..|||.|..+..|+..++. |+|+|+|+..++.+.+......... ....... .....|
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~--~~~~~~~--------------~~~~~i 105 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVI--HGNDYKL--------------YKGDDI 105 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCccee--cccccce--------------eccCce
Confidence 4579999999999999988777775 9999999999999866432100000 0000000 012346
Q ss_pred eeeccCCcCCCCC---CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++.++|++. +.+ ..++||+|+-..++++++.+...+..+.+.++|+|||.+++..
T Consensus 106 ~~~~gD~f~-l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 106 EIYVADIFN-LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred EEEEccCcC-CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 777777663 322 1368999999999999998889999999999999999887754
No 107
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.11 E-value=3.2e-10 Score=98.61 Aligned_cols=91 Identities=12% Similarity=-0.049 Sum_probs=67.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+.......++++|+|+.+++.++++. +.++..++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~-------------~~~~~~d~~-------------- 65 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARG-------------VNVIQGDLD-------------- 65 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcC-------------CeEEEEEhh--------------
Confidence 45789999999999998655444446899999999999886421 234344433
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp 284 (307)
..+. ..+++||+|+++.+++|+. +...+++++.+.+++
T Consensus 66 --------~~l~~~~~~sfD~Vi~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 66 --------EGLEAFPDKSFDYVILSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred --------hcccccCCCCcCEEEEhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 1121 2457899999999999998 568889988887664
No 108
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.11 E-value=7.9e-10 Score=101.92 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=72.3
Q ss_pred ceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+.. . +++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-----~----------------------~v~ 168 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-----H----------------------RVE 168 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----C----------------------cEE
Confidence 6899999999999997766554 38999999999999999987543221 1 133
Q ss_pred eeccCCcCCCCCCCCceeeEEcch-------------hhhhCCh----------hHHHHHHHHHHHcCCCCcEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQW-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~-------------~l~~~~~----------~dl~~~l~~l~~~LkpGG~lii 290 (307)
|.+.|....+ +.++||+|+++- +..|-+. .....+++.+.+.|+|||+|++
T Consensus 169 ~~~~d~~~~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 169 FIQSNLFEPL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred EEECchhccC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 4444433232 234799999862 1222211 1457889999999999999887
No 109
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.11 E-value=8.3e-10 Score=102.88 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=72.2
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+.. ..+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-----~~i~---------------------- 187 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-----DRVT---------------------- 187 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----CcEE----------------------
Confidence 68999999999999977665543 7999999999999999987543321 1233
Q ss_pred eeccCCcCCCCCCCCceeeEEcchh------h-------hhCCh----------hHHHHHHHHHHHcCCCCcEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWC------I-------GHLTD----------DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~------l-------~~~~~----------~dl~~~l~~l~~~LkpGG~lii 290 (307)
+.+.|....+ +.++||+|+++-. + +|-+. .....+++.+.+.|+|||.+++
T Consensus 188 ~~~~D~~~~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 188 LIESDLFAAL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred EEECchhhhC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4444432233 2457999998621 1 11110 1246889999999999999988
No 110
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.10 E-value=2.4e-10 Score=100.36 Aligned_cols=129 Identities=18% Similarity=0.288 Sum_probs=90.4
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
..+|..+.... ++.+||||||++|+.+.+++.... .+|+.+|+++...+.|++.+...++ ..++++
T Consensus 34 g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~ 101 (205)
T PF01596_consen 34 GQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEV 101 (205)
T ss_dssp HHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEE
T ss_pred HHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEE
Confidence 45666655422 567999999999999998776554 3899999999999999998865443 234444
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCC--CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
...+.. +....+.. ..++||+||.-. .+.+...++..+.+.|+|||.+++ ||+
T Consensus 102 ~~gda~-------------------~~l~~l~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~-DN~ 156 (205)
T PF01596_consen 102 IEGDAL-------------------EVLPELANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIA-DNV 156 (205)
T ss_dssp EES-HH-------------------HHHHHHHHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEE-ETT
T ss_pred EEeccH-------------------hhHHHHHhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEE-ccc
Confidence 444432 00001110 135899999854 345678889999999999998766 999
Q ss_pred CCCCcccCCC
Q 021836 295 ARSGTFLLSH 304 (307)
Q Consensus 295 ~~~~~~~d~~ 304 (307)
...|.++++.
T Consensus 157 l~~G~V~~~~ 166 (205)
T PF01596_consen 157 LWRGSVADPD 166 (205)
T ss_dssp TGGGGGGSTT
T ss_pred cccceecCcc
Confidence 9999888763
No 111
>PRK14968 putative methyltransferase; Provisional
Probab=99.09 E-value=6.6e-10 Score=95.31 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=73.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+..+ ..+.+...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~~~~~~~----------------- 80 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN----NGVEVIRS----------------- 80 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC----cceEEEec-----------------
Confidence 5678999999999999977665 5579999999999999988875432211 00223333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhC-------------------ChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHL-------------------TDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~-------------------~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|....+ ..++||+|+++..+... ....+..+++++.++|||||.+++...
T Consensus 81 -----d~~~~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 81 -----DLFEPF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred -----cccccc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 322222 23479999976432210 012357789999999999999887643
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.09 E-value=1.9e-09 Score=102.72 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=76.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+..+||||||+|..+..++..... .++|+|+++.+++.+.+++...+.. ++.++..|+.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~------NV~~i~~DA~------------- 182 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK------NLLIINYDAR------------- 182 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC------cEEEEECCHH-------------
Confidence 3458999999999999987766654 8999999999999999887654332 2334444432
Q ss_pred eeeeccCCcCCC-CCCCCceeeEEcchhhhhCChh----HHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADF-TPETGRYDVIWVQWCIGHLTDD----DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~-~~~~~~fDlIi~~~~l~~~~~~----dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.-+ ..+++++|.|++++..-+.... ....++..++++|+|||.+.+.
T Consensus 183 ---------~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 183 ---------LLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred ---------HhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 111 1346899999986543221111 1268999999999999999884
No 113
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.07 E-value=5.2e-10 Score=94.53 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=65.5
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhh
Q 021836 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCI 263 (307)
Q Consensus 184 ~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l 263 (307)
+|+|+|+.|++.|+++....... ....+++...+.+ +++.++++||+|++.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~~-----------------------~lp~~~~~fD~v~~~~~l 54 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDAI-----------------------DLPFDDCEFDAVTMGYGL 54 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEechh-----------------------hCCCCCCCeeEEEecchh
Confidence 58999999999998765321100 0123455555554 666667899999999999
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 264 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 264 ~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
+++. +...++++++++|||||.|++.|...++
T Consensus 55 ~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 55 RNVV--DRLRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred hcCC--CHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 9998 6799999999999999999999876544
No 114
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.07 E-value=8.1e-10 Score=97.43 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||||.++..++.... .+|+++|+++ |. .. ..+.+++.|+...+...+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~-----------~~v~~i~~D~~~~~~~~~----- 108 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI-----------VGVDFLQGDFRDELVLKA----- 108 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC-----------CCcEEEecCCCChHHHHH-----
Confidence 567999999999999997766643 3799999988 21 00 123455555540000000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh--H-------HHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~--d-------l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. -....++||+|++..+.++...+ + ...+++.+.++|+|||.|++...
T Consensus 109 --------i~--~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 109 --------LL--ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred --------HH--HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 00 01235789999997655443321 1 25689999999999999999643
No 115
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.06 E-value=1e-09 Score=94.36 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=68.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||.|.+...+.....-+..|+|+++..+..|.++- +++++.|++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG-------------v~Viq~Dld-------------- 65 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG-------------VSVIQGDLD-------------- 65 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC-------------CCEEECCHH--------------
Confidence 78999999999999998765544447999999999988886653 345555554
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcC
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL 282 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~L 282 (307)
..+. +++++||.|+++.++.++..+ ..+|+++.++-
T Consensus 66 --------~gL~~f~d~sFD~VIlsqtLQ~~~~P--~~vL~EmlRVg 102 (193)
T PF07021_consen 66 --------EGLADFPDQSFDYVILSQTLQAVRRP--DEVLEEMLRVG 102 (193)
T ss_pred --------HhHhhCCCCCccEEehHhHHHhHhHH--HHHHHHHHHhc
Confidence 2332 468999999999999999854 77888887663
No 116
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.05 E-value=1.6e-09 Score=103.85 Aligned_cols=119 Identities=21% Similarity=0.254 Sum_probs=76.9
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
.+..+++.++... .++.+|||+|||+|.++..++..... +|+++|+|+.|++.|++++...+ ..+.
T Consensus 237 eTE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------~rV~ 303 (423)
T PRK14966 237 ETEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------ARVE 303 (423)
T ss_pred cHHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEE
Confidence 3445555555422 13468999999999999976655443 79999999999999999875321 1233
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-----CC----------------h--hHHH
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-----LT----------------D--DDFV 272 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-----~~----------------~--~dl~ 272 (307)
+ .+.|+.....+..++||+|+|+-.... .. + ....
T Consensus 304 f----------------------i~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr 361 (423)
T PRK14966 304 F----------------------AHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIR 361 (423)
T ss_pred E----------------------EEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHH
Confidence 3 333332221112457999998643110 00 0 1245
Q ss_pred HHHHHHHHcCCCCcEEEE
Q 021836 273 SFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 273 ~~l~~l~~~LkpGG~lii 290 (307)
.+++.+.+.|+|||.+++
T Consensus 362 ~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 362 TLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred HHHHHHHHhcCCCcEEEE
Confidence 778888899999999876
No 117
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.05 E-value=1.3e-09 Score=98.25 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=91.9
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
....|+..++.. .+..+|||||+++|+.+.+++.... .+|+.+|.++...+.|++.+...++. ..+
T Consensus 66 ~~g~lL~~l~~~-------~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-----~~I 133 (247)
T PLN02589 66 DEGQFLNMLLKL-------INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-----HKI 133 (247)
T ss_pred HHHHHHHHHHHH-------hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----Cce
Confidence 334666666652 2457999999999999997765443 28999999999999999998766542 234
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCCC---CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+...+.. +....+.. ..++||+||.-.- +.....++..+.+.|+|||+|++
T Consensus 134 ~~~~G~a~-------------------e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~- 188 (247)
T PLN02589 134 DFREGPAL-------------------PVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY- 188 (247)
T ss_pred EEEeccHH-------------------HHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-
Confidence 44444332 00001110 1368999997532 44567888899999999999555
Q ss_pred eccCCCCcccCCC
Q 021836 292 ENIARSGTFLLSH 304 (307)
Q Consensus 292 e~~~~~~~~~d~~ 304 (307)
||+...|.++|++
T Consensus 189 DNvl~~G~v~~~~ 201 (247)
T PLN02589 189 DNTLWNGSVVAPP 201 (247)
T ss_pred cCCCCCCcccCcc
Confidence 9999999988864
No 118
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.05 E-value=1.2e-09 Score=93.29 Aligned_cols=102 Identities=19% Similarity=0.105 Sum_probs=76.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.++.+++|||||||.++..++..... +|+++|-++++++..+++....+..| +.....+..
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n------~~vv~g~Ap----------- 94 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN------LEVVEGDAP----------- 94 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc------EEEEeccch-----------
Confidence 558899999999999999987643433 89999999999999999887654332 223233222
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.+...+ ++|.||....- .+..+++.+...|||||.+++-
T Consensus 95 -----------~~L~~~~-~~daiFIGGg~------~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 95 -----------EALPDLP-SPDAIFIGGGG------NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred -----------HhhcCCC-CCCEEEECCCC------CHHHHHHHHHHHcCcCCeEEEE
Confidence 2332222 79999998762 6688999999999999999884
No 119
>PRK04457 spermidine synthase; Provisional
Probab=99.03 E-value=1.3e-09 Score=99.47 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=72.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++..... +++++|+++.+++.|++++...+. ..+++++..|..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~------------- 127 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGA------------- 127 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHH-------------
Confidence 4578999999999999976665544 799999999999999988743110 123344444432
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh-hhhCCh-hHHHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC-IGHLTD-DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~-l~~~~~-~dl~~~l~~l~~~LkpGG~lii 290 (307)
..+....++||+|++... -...+. -...++++.+.+.|+|||++++
T Consensus 128 ---------~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 128 ---------EYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred ---------HHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 122222468999997521 011111 0127899999999999999988
No 120
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=2.5e-09 Score=97.64 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+++++|+|+.+++.+++++. ... ...+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~-----~~~i~-------------------- 161 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL-----GARVE-------------------- 161 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-----CCcEE--------------------
Confidence 567999999999999997766553 379999999999999998874 100 11233
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhh------hCC------------------hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIG------HLT------------------DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~------~~~------------------~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+...|+.... ..++||+|+++.... .+. -.....+++++.+.|+|||++++.
T Consensus 162 --~~~~d~~~~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 162 --FLQGDWFEPL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred --EEEccccCcC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 3333332222 246899999853211 010 012467889999999999999883
No 121
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.01 E-value=1.8e-09 Score=101.55 Aligned_cols=108 Identities=14% Similarity=-0.049 Sum_probs=77.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+++.+|||+|||+|.++... .....+++|+|+++.|+..++.++...+..+ +.+...|+.
T Consensus 181 ~~g~~vLDp~cGtG~~liea-a~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~------i~~~~~D~~------------- 240 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEA-GLMGAKVIGCDIDWKMVAGARINLEHYGIED------FFVKRGDAT------------- 240 (329)
T ss_pred CCcCEEEECCCCCCHHHHHH-HHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC------CeEEecchh-------------
Confidence 36779999999999998864 3344579999999999999998886544321 344455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhh-------CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGH-------LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-------~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++..+++||+|+++..... ........+++.+.+.|+|||++++.-.
T Consensus 241 ----------~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 241 ----------KLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred ----------cCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 44444678999998633211 1112257899999999999999887643
No 122
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.99 E-value=4.9e-09 Score=91.29 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=84.7
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||||||||..+.++...+.. ...-.|+++..+...+......+..|..... ..|+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~-----~lDv~---------------- 86 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL-----ALDVS---------------- 86 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe-----EeecC----------------
Confidence 5999999999999987776665 5677888888877777666555444322111 22221
Q ss_pred eccCCcCC-CC------CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 239 AKKGISAD-FT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 239 ~~~d~~~~-~~------~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
.. ++ ...++||.|+|.+++|-++....+.+|+.+.++|+|||.|++--....+|.+
T Consensus 87 ------~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ 149 (204)
T PF06080_consen 87 ------APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF 149 (204)
T ss_pred ------CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe
Confidence 11 11 1356899999999999999888999999999999999999998777666644
No 123
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.97 E-value=8.3e-09 Score=93.52 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=71.1
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+ .++++.|+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~-------------- 143 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLY-------------- 143 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeech--------------
Confidence 458999999999999976655433 79999999999999999875321 134444433
Q ss_pred eeeccCCcCCCCC-CCCceeeEEcchhh------hhCCh------------------hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTP-ETGRYDVIWVQWCI------GHLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~fDlIi~~~~l------~~~~~------------------~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
..+.. ..++||+|+++-.. ..+.+ +-+..+++.+.+.|+|||.+++.
T Consensus 144 --------~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 144 --------DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred --------hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11110 13579999987421 11111 01458888999999999999975
Q ss_pred e
Q 021836 292 E 292 (307)
Q Consensus 292 e 292 (307)
-
T Consensus 216 ~ 216 (251)
T TIGR03704 216 T 216 (251)
T ss_pred E
Confidence 3
No 124
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.97 E-value=3.1e-09 Score=97.27 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=72.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||++|||+|..+..+++.. ..+++++|+++.+++.+++.+...... ....+++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--~~~~~v~-------------------- 129 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--YDDPRVD-------------------- 129 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--ccCCceE--------------------
Confidence 34599999999999998877665 458999999999999999876432100 0011222
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
+...|....+....++||+|++........... ..++++.+.+.|+|||.+++.
T Consensus 130 --i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 130 --LQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred --EEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 222222111111246899999865421111112 368899999999999999885
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=5.2e-09 Score=97.96 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=69.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+++.+|||+|||+|.++..+..... ..|+++|+++.+++.|++++...+.. .+.+...|..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~------nV~~i~gD~~----------- 141 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE------NVIFVCGDGY----------- 141 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC------cEEEEeCChh-----------
Confidence 3568999999999999996554432 25999999999999999887654321 1233333332
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+..++||+|++...+.++ ...+.+.|+|||.+++...
T Consensus 142 ------------~~~~~~~~fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 142 ------------YGVPEFAPYDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ------------hcccccCCccEEEECCchHHh--------HHHHHHhcCCCCEEEEEeC
Confidence 222234679999987654433 2346778999999888543
No 126
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.96 E-value=6.6e-10 Score=97.90 Aligned_cols=101 Identities=24% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
.+++.+|||||||+|+.+. +++.... .|+++|..+...+.|++++...+..
T Consensus 70 l~pg~~VLeIGtGsGY~aA-lla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~------------------------- 123 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAA-LLAHLVGPVGRVVSVERDPELAERARRNLARLGID------------------------- 123 (209)
T ss_dssp C-TT-EEEEES-TTSHHHH-HHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-------------------------
T ss_pred cCCCCEEEEecCCCcHHHH-HHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-------------------------
Confidence 4588999999999999999 5666543 6999999999999999998643321
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+|++...|....++ ...+||.|++......++ ..+.+.|++||.+++.-.
T Consensus 124 ---nv~~~~gdg~~g~~-~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 124 ---NVEVVVGDGSEGWP-EEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ---SEEEEES-GGGTTG-GG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred ---ceeEEEcchhhccc-cCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 23344444333443 356899999987764433 347778999999998544
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.95 E-value=4e-09 Score=89.71 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=68.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++++.. ..++.++..|+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~-------------- 69 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDAL-------------- 69 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchh--------------
Confidence 5678999999999999987766 55799999999999999988742 113445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+..+..+||.|+++-.+ |...+.+..+++.. .+.++|+|++
T Consensus 70 ---------~~~~~~~~~d~vi~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 70 ---------KFDLPKLQPYKVVGNLPY-NISTPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred ---------cCCccccCCCEEEECCCc-ccHHHHHHHHHhcC--CCcceEEEEE
Confidence 444444569999987654 44433444444432 2447777766
No 128
>PTZ00146 fibrillarin; Provisional
Probab=98.95 E-value=8.9e-09 Score=94.54 Aligned_cols=104 Identities=14% Similarity=0.009 Sum_probs=68.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..+..+|||+|||+|.++..++.... ..|+++|+++.|.+...+..... .++.++..|+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------~NI~~I~~Da~---------- 191 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------PNIVPIIEDAR---------- 191 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCCEEEECCcc----------
Confidence 45778999999999999997655442 37999999998665444433210 12233333332
Q ss_pred ccceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.. +....++||+|++... . . ++...++.++.+.|||||.|++..
T Consensus 192 ------------~p~~y~~~~~~vDvV~~Dva--~-p-dq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 192 ------------YPQKYRMLVPMVDVIFADVA--Q-P-DQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred ------------ChhhhhcccCCCCEEEEeCC--C-c-chHHHHHHHHHHhccCCCEEEEEE
Confidence 11 1112347999998764 1 1 244566778999999999999943
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.94 E-value=3.3e-09 Score=109.15 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ...+.++..|..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~-------------- 599 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCL-------------- 599 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHH--------------
Confidence 35789999999999999876665668999999999999999998654431 013344444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh-hhh--------CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC-IGH--------LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~-l~~--------~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+....++||+|++.-. +.. -...+...++..+.++|+|||.+++..+
T Consensus 600 --------~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 600 --------AWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred --------HHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 111111468999998522 100 0012467789999999999999988544
No 130
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.94 E-value=1.5e-09 Score=99.30 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=89.5
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
++....|+..++-... .++...++++|||-|...+..-+.+.+.++|+|++...++.|++++...... ..
T Consensus 99 lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r----~~-- 168 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR----FK-- 168 (389)
T ss_pred hhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhh----hh--
Confidence 4455667777654333 2366789999999999888777788889999999999999999887532100 00
Q ss_pred ceeecCcccccccccccCccceeeeccCCc-----CCCCCCCCceeeEEcchhhhhC--ChhHHHHHHHHHHHcCCCCcE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGIS-----ADFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGF 287 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~-----~~~~~~~~~fDlIi~~~~l~~~--~~~dl~~~l~~l~~~LkpGG~ 287 (307)
.|. -++.|+.+|-+ ..+.+.+.+||+|-|.+++||. +.+...-++.++.+.|+|||+
T Consensus 169 ~~~----------------f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 169 KFI----------------FTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred ccc----------------ceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 000 01123322211 1222234459999999999984 334567889999999999999
Q ss_pred EEEE
Q 021836 288 FVLK 291 (307)
Q Consensus 288 lii~ 291 (307)
||-+
T Consensus 233 FIgT 236 (389)
T KOG1975|consen 233 FIGT 236 (389)
T ss_pred EEEe
Confidence 9875
No 131
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=4.9e-09 Score=96.44 Aligned_cols=101 Identities=24% Similarity=0.297 Sum_probs=70.6
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++. ++. +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~------~~~----------------------~ 164 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV------RVL----------------------V 164 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc------cEE----------------------E
Confidence 7999999999999987666664 8999999999999999998765431 111 1
Q ss_pred eccCCcCCCCCCCCceeeEEcchhh-----hhCCh------------------hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCI-----GHLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l-----~~~~~------------------~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+.|++... .++||+|++|-.. .+..+ +....++..+.+.|+|||++++-
T Consensus 165 ~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 165 VQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred Eeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 222222222 4589999987320 00100 13467889999999999988873
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=98.93 E-value=5.9e-09 Score=94.83 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=72.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||+|||+|.++..++.+. ..+|+++|+++.|++.++++.. .+.+++.|+.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~------------- 119 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVF------------- 119 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchh-------------
Confidence 34689999999999988665554 3489999999999999987642 2344455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH------------------HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d------------------l~~~l~~l~~~LkpGG~lii~ 291 (307)
.+.. .++||+|+++-.+.+....+ +.++++.....|+|+|.+++.
T Consensus 120 ----------e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 120 ----------EFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ----------hhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 3322 46899999987777654322 246677788899999977664
No 133
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=7.2e-09 Score=101.10 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. .+.+.+.|..
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~------~v~~~~~D~~---------- 313 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK------SIKILAADSR---------- 313 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC------eEEEEeCChh----------
Confidence 34678999999999999997665532 37999999999999999988665432 2344444443
Q ss_pred ccceeeeccCCcCCCC----CCCCceeeEEcc------hhhhhCCh-------hH-------HHHHHHHHHHcCCCCcEE
Q 021836 233 SKKVKIAKKGISADFT----PETGRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~----~~~~~fDlIi~~------~~l~~~~~-------~d-------l~~~l~~l~~~LkpGG~l 288 (307)
.+. ...++||.|++. .++++-++ .+ ..+++.++.+.|||||.|
T Consensus 314 -------------~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~l 380 (434)
T PRK14901 314 -------------NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTL 380 (434)
T ss_pred -------------hcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 221 124689999953 23333221 11 368899999999999999
Q ss_pred EEEec
Q 021836 289 VLKEN 293 (307)
Q Consensus 289 ii~e~ 293 (307)
+.+..
T Consensus 381 vystc 385 (434)
T PRK14901 381 VYATC 385 (434)
T ss_pred EEEeC
Confidence 87654
No 134
>PLN02366 spermidine synthase
Probab=98.93 E-value=7.6e-09 Score=96.34 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+||+||||.|.++..+++.. ..+|+.+|+++.+++.|++.+...+.. .... +
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dp----------------------R 146 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDP----------------------R 146 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCC----------------------c
Confidence 56799999999999999876542 348999999999999999987532110 0112 3
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii 290 (307)
++++..|....+.. +.++||+|++...-.+..... -.++++.+.+.|+|||++++
T Consensus 147 v~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 147 VNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred eEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 34444432211111 246899999854322111111 26789999999999999876
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=4.6e-09 Score=104.18 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=71.2
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++. .. |
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-----~~----------------------v 191 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-----DR----------------------I 191 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-----cc----------------------e
Confidence 468999999999999977665543 8999999999999999887543221 12 3
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh--------------hhhCC-------h---hHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC--------------IGHLT-------D---DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~--------------l~~~~-------~---~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.+.|....+ ..++||+|+++-. ..|-+ . .....+++.+.+.|+|||.+++
T Consensus 192 ~~~~~D~~~~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 192 QIIHSNWFENI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred eeeecchhhhC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 33444432222 2458999998521 11110 0 1245678899999999999987
No 136
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.92 E-value=7.6e-09 Score=90.18 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=73.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.-|||||||+|..+..+...+ ...+|+|+|+.|++.|.+.--+ .++.-.|+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-----------gdlil~DM--------------- 102 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-----------GDLILCDM--------------- 102 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-----------cCeeeeec---------------
Confidence 46789999999999988544444 5699999999999999863211 12333333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhh---------hCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~---------~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+.+++.++.||-+++...+. |.+...+..|+..++..|++|+..++
T Consensus 103 -------G~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 103 -------GEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred -------CCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 237777889999988653322 33445578899999999999999887
No 137
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.91 E-value=4.4e-09 Score=91.00 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++..... +|+++|+|+.+ .. ..+.+.+.++...+...
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----------~~i~~~~~d~~~~~~~~----- 88 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----------ENVDFIRGDFTDEEVLN----- 88 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----------CCceEEEeeCCChhHHH-----
Confidence 46789999999999999976655433 69999999854 11 11234444433000000
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchh--------hhhCC-hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWC--------IGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~--------l~~~~-~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. . ....++||+|++..+ +.|.. ......++..+.+.|+|||.+++.
T Consensus 89 --------~l~-~-~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 89 --------KIR-E-RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred --------HHH-H-HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 000 0 012467999998543 21211 113478899999999999999984
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=98.91 E-value=8.8e-09 Score=97.09 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=73.2
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||++|||+|..+..+++.. ..+|++||+++.|++.|++...-..+ + ...+. .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-~----------~~~~~----------DpR 208 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-N----------KSAFF----------DNR 208 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-c----------cccCC----------CCc
Confidence 45799999999999988777643 35899999999999999962110000 0 00000 123
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhh--h-hCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCI--G-HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l--~-~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++...|....+....++||+|++...- . ....---.++++.+++.|+|||+|++...
T Consensus 209 V~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 209 VNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred eEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 4444444332232235689999986321 0 11111126799999999999999988643
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=1.6e-08 Score=98.52 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. +.+.+.|..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-------~~~~~~D~~------------ 303 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-------ATVIVGDAR------------ 303 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------eEEEEcCcc------------
Confidence 4678999999999999998776654 38999999999999999988654321 234444433
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcchh------hhh-------CChhH-------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQWC------IGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~~~------l~~-------~~~~d-------l~~~l~~l~~~LkpGG~lii~e 292 (307)
... ...++||.|++.-. +.+ ....+ ...++..+.+.|||||.++++.
T Consensus 304 -----------~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 304 -----------DPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred -----------cchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 211 12467999994321 111 11111 3578999999999999999876
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 373 c 373 (427)
T PRK10901 373 C 373 (427)
T ss_pred C
Confidence 4
No 140
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.90 E-value=8.6e-09 Score=99.20 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=75.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++...+.....+|+++|+|+.+++.|++++..+++. ...+.++..|+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~-------------- 281 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVF-------------- 281 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHH--------------
Confidence 45789999999999998655555558999999999999999998654431 012344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCCh-------hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-------~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+....+....++||+|++.-..---+. .+...++..+.++|+|||.|+...+
T Consensus 282 -----~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 282 -----KLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred -----HHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 000011112457999998733100111 1356677788999999999998654
No 141
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.89 E-value=1.5e-08 Score=98.72 Aligned_cols=111 Identities=19% Similarity=0.078 Sum_probs=75.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. ..+.+...+..
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-----~~v~~~~~d~~----------- 299 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-----IKAETKDGDGR----------- 299 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeccccc-----------
Confidence 34678999999999999997665443 48999999999999999998654331 01111122211
Q ss_pred cceeeeccCCcCCCCC--CCCceeeEEcc------hhhhhCCh-------h-------HHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTP--ETGRYDVIWVQ------WCIGHLTD-------D-------DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~--~~~~fDlIi~~------~~l~~~~~-------~-------dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.... ..++||.|++. .++++.++ . ....+|..+.+.|||||.|+++
T Consensus 300 ------------~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 300 ------------GPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred ------------cccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111 35689999952 33444331 1 1367899999999999999997
Q ss_pred ec
Q 021836 292 EN 293 (307)
Q Consensus 292 e~ 293 (307)
..
T Consensus 368 tc 369 (426)
T TIGR00563 368 TC 369 (426)
T ss_pred eC
Confidence 54
No 142
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.89 E-value=5e-09 Score=92.99 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=81.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+||..|||.|.....++..++ +|+|+|+|+..++.+.+....... ........ .....+
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~-----~~~~~~~~-----------~~~~~~ 98 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPT-----VTSVGGFK-----------RYQAGR 98 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEE-----CTTCTTEE-----------EETTSS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCC-----ccccccee-----------eecCCc
Confidence 3667999999999999998777666 699999999999998544321000 00000000 012346
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
|++.++|++.--....++||+|+=..+++-++.+...+..+.+.++|+|||.+++
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 7888888764322223689999988888888888899999999999999999433
No 143
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.6e-08 Score=98.89 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=74.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...++. .+.+.+.+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~------~v~~~~~Da~----------- 311 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT------IIETIEGDAR----------- 311 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC------eEEEEeCccc-----------
Confidence 356899999999999988655443 237999999999999999988654331 2334444433
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcc------hhhh-------hCChhH-------HHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQ------WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~------~~l~-------~~~~~d-------l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. +.++||+|++. .++. +.+..+ ...++..+.+.|||||.+++...
T Consensus 312 ------------~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 312 ------------SFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred ------------ccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 332 34689999952 1111 112222 24689999999999999999764
No 144
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.87 E-value=1.5e-08 Score=92.59 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=74.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+.. .+.+...|..
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~------~v~~~~~D~~---------- 132 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL------NVAVTNFDGR---------- 132 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC------cEEEecCCHH----------
Confidence 34678999999999999997655442 37999999999999999998655432 1333333332
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcch------hhhh-------CChh-------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQW------CIGH-------LTDD-------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~------~l~~-------~~~~-------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+....++||+|++.- ++.+ .+.. ...++|+.+.+.|||||+|+.+.
T Consensus 133 -------------~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 133 -------------VFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred -------------HhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2222235699998531 1111 1111 22568999999999999998875
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 200 c 200 (264)
T TIGR00446 200 C 200 (264)
T ss_pred C
Confidence 4
No 145
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=1e-08 Score=90.47 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=77.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCC-CCccc-----ccccceeecCcc-cccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH-MAPDM-----HKATNFFCVPLQ-GQREKN 228 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~-~~~~~-----~~~~~~~~~d~~-~~~~~~ 228 (307)
.+..+|||||..|.+|..+.+.... .|.|+||++..+..|++.+.-..- ..... .....+.....+ ..+...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 5678999999999999976655433 799999999999999988753211 00000 000011000000 000000
Q ss_pred cccCccceeeeccCCcCC---C-CCCCCceeeEEcchh--hhhC--ChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 229 KKVGSKKVKIAKKGISAD---F-TPETGRYDVIWVQWC--IGHL--TDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 229 ~~~~~~~i~~~~~d~~~~---~-~~~~~~fDlIi~~~~--l~~~--~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+.....++-|...+...+ + ......||+|+|-.+ ..|+ .|+-+..++++++++|.|||+|++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111122222222221111 1 123568999998532 2244 445699999999999999999988
No 146
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=1.9e-08 Score=97.97 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=75.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+|||+|..|..++... ..+|+++|+++.+++.+++++...+.. .+.+...|..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~------~v~~~~~Da~---------- 298 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS------SIEIKIADAE---------- 298 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC------eEEEEECchh----------
Confidence 3467899999999999998766554 348999999999999999998655432 1334344433
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEcch------hhhh-------CChh-------HHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWVQW------CIGH-------LTDD-------DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~------~l~~-------~~~~-------dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ...++||.|++.- ++.+ .+.. ...+++.++.+.|||||.++++
T Consensus 299 -------------~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 299 -------------RLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred -------------hhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 222 1246799999631 1111 1111 2367799999999999999886
Q ss_pred ec
Q 021836 292 EN 293 (307)
Q Consensus 292 e~ 293 (307)
..
T Consensus 366 TC 367 (431)
T PRK14903 366 TC 367 (431)
T ss_pred EC
Confidence 54
No 147
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=4e-09 Score=92.40 Aligned_cols=101 Identities=17% Similarity=0.300 Sum_probs=81.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
....++|||||-|.+...+......+++.+|.|-.|++.++..-. ..-...++..|-+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--------p~i~~~~~v~DEE-------------- 129 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--------PSIETSYFVGDEE-------------- 129 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--------CceEEEEEecchh--------------
Confidence 345799999999999999988899899999999999999875421 1122333344433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+++.++++|+|+++..+|+.+ ++...+.+|+..|||+|.|+-
T Consensus 130 ---------~Ldf~ens~DLiisSlslHW~N--dLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 130 ---------FLDFKENSVDLIISSLSLHWTN--DLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred ---------cccccccchhhhhhhhhhhhhc--cCchHHHHHHHhcCCCccchh
Confidence 5556789999999999998888 889999999999999999875
No 148
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.84 E-value=2.8e-08 Score=97.28 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+.. .+.+.+.|..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~------~v~~~~~D~~----------- 311 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT------NIETKALDAR----------- 311 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------eEEEEeCCcc-----------
Confidence 356799999999999999776654 348999999999999999988654432 1334444433
Q ss_pred cceeeeccCCcCCCC-CCCCceeeEEcchh------hhhC-------ChhH-------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFT-PETGRYDVIWVQWC------IGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~------l~~~-------~~~d-------l~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. ...++||+|++.-. +.+- +..+ ...++..+.+.|||||.|+.+.
T Consensus 312 ------------~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 312 ------------KVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred ------------cccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 221 11268999996421 1111 1111 2468999999999999999754
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 380 c 380 (444)
T PRK14902 380 C 380 (444)
T ss_pred C
Confidence 3
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.82 E-value=2.3e-08 Score=87.45 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=71.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++++...+|+++|.++.+++.+++++...+.. .+.+++.|+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~------~v~~~~~D~~-------------- 112 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG------NARVVNTNAL-------------- 112 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC------cEEEEEchHH--------------
Confidence 45699999999999998767777779999999999999999887654321 2334444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii~e 292 (307)
..+....++||+|++.-.+.. . -...+++.+.. .|+|+|++++..
T Consensus 113 --------~~l~~~~~~fDlV~~DPPy~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 113 --------SFLAQPGTPHNVVFVDPPFRK-G--LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred --------HHHhhcCCCceEEEECCCCCC-C--hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 122112346999999766321 1 23455565555 489999888753
No 150
>PRK03612 spermidine synthase; Provisional
Probab=98.78 E-value=2.5e-08 Score=99.35 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHh--CCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..+++... .+|+++|+++++++.++++. ...+... -..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~-~~d---------------------- 353 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGA-LDD---------------------- 353 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccc-cCC----------------------
Confidence 467999999999999998776533 58999999999999999842 2110000 001
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh---HHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD---DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~---dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++++++..|........+++||+|++...-...+.. --.++++.+.+.|||||.+++.
T Consensus 354 prv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 354 PRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 223344444332222224689999987542211100 1256899999999999999874
No 151
>PHA03412 putative methyltransferase; Provisional
Probab=98.77 E-value=3.5e-08 Score=87.89 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=66.9
Q ss_pred CceEEEEeccccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~----~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++... ..+...|+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------~~~~~~D~~----------- 107 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------ATWINADAL----------- 107 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------CEEEEcchh-----------
Confidence 5799999999999999765542 22799999999999999977531 334455543
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCC----------hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLT----------DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~----------~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.... +++||+|+++-.+.-.. ..-...++.++.+++++|+. |+-
T Consensus 108 ------------~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 108 ------------TTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred ------------cccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 2222 46899999985433111 11245688899986666664 553
No 152
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1e-07 Score=85.62 Aligned_cols=131 Identities=20% Similarity=0.274 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
..+.++..++...- +...-.+..|||+|||+|.++..++....+ .++++|.|+.++..|.+++...++.+ .+.
T Consensus 129 ETEE~V~~Vid~~~-~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g-----~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALN-NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSG-----RIE 202 (328)
T ss_pred cHHHHHHHHHHHHh-hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcC-----ceE
Confidence 44566666665321 111124457999999999999988777665 79999999999999999887665532 222
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh--------------------------h
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD--------------------------D 269 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~--------------------------~ 269 (307)
..+..++ .+.....+...+++|+++++-. |+.+ +
T Consensus 203 v~~~~me------------------~d~~~~~~l~~~~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 203 VIHNIME------------------SDASDEHPLLEGKIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred EEecccc------------------cccccccccccCceeEEecCCC--cccccchhhcCchheecCchhhhccccchhH
Confidence 2222222 1111122223588999998733 1111 1
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+..++.-+.++|+|||.+.+--+
T Consensus 263 ~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHHhhHhhcccCCeEEEEec
Confidence 234667788899999999988544
No 153
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.71 E-value=1.8e-08 Score=87.58 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=56.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+...|.|+|||.+.++.. +.... .|...|.-+. +-.+..+|+.
T Consensus 72 ~~~viaD~GCGdA~la~~-~~~~~-~V~SfDLva~---------------------n~~Vtacdia-------------- 114 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKA-VPNKH-KVHSFDLVAP---------------------NPRVTACDIA-------------- 114 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------------STTEEES-TT--------------
T ss_pred CCEEEEECCCchHHHHHh-cccCc-eEEEeeccCC---------------------CCCEEEecCc--------------
Confidence 457999999999999974 33223 4899997321 1124456665
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..|.++++.|+++++.+|.. .++..++.++.++|||||.|.|+|..
T Consensus 115 ---------~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 115 ---------NVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ---------S-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ---------cCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEec
Confidence 66777899999999887643 26789999999999999999999874
No 154
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.69 E-value=4.1e-08 Score=87.49 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=66.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
....|.|+|||-+.++. .....|+..|+-+ .+-++..+|+.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------------~~~~V~~cDm~-------------- 220 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------------VNERVIACDMR-------------- 220 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeec---------------------CCCceeecccc--------------
Confidence 56789999999998875 3344688888721 11234456666
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.++++.|+++++.+|.. .++..++.++.++|+|||.++|.|.
T Consensus 221 ---------~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 221 ---------NVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ---------CCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEeh
Confidence 66667899999998777632 3789999999999999999999986
No 155
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.68 E-value=1.3e-07 Score=92.48 Aligned_cols=106 Identities=21% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++ ....+|+++|+|+.|++.|++++...+.. .+.++..++..
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la-~~~~~V~gvD~s~~al~~A~~n~~~~~~~------~v~~~~~d~~~------------ 356 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLA-RQAAEVVGVEGVEAMVERARENARRNGLD------NVTFYHANLEE------------ 356 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEEEeChHH------------
Confidence 356799999999999999754 44568999999999999999887544321 24455554430
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
........+++||+|++.-.-. .....++.+.+ ++|+++++++=|
T Consensus 357 -------~l~~~~~~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 357 -------DFTDQPWALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred -------hhhhhhhhcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 0001112245799999864321 12344555555 689999888744
No 156
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.4e-07 Score=84.30 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=76.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|+|.|.|+|.++..++.... .+|+.+|+-+.+.+.|++++...++.+ .+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d-----~v~----------------- 149 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD-----RVT----------------- 149 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc-----ceE-----------------
Confidence 45889999999999999997654322 389999999999999999997654432 122
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...|+.+... .+.||.|+. .++ +.-+++..++.+|+|||.+++.-.
T Consensus 150 -----~~~~Dv~~~~~--~~~vDav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 150 -----LKLGDVREGID--EEDVDAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -----EEecccccccc--ccccCEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 23333333332 348999987 445 558899999999999999988543
No 157
>PLN02672 methionine S-methyltransferase
Probab=98.66 E-value=1.2e-07 Score=100.48 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=77.0
Q ss_pred CceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++..++... . ..... +...+....+|
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~---~------~~~~~---~~~~~~l~~rV 186 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDD---D------GLPVY---DGEGKTLLDRV 186 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccc---c------ccccc---ccccccccccE
Confidence 45899999999999997766654 389999999999999999885432110 0 00000 00000112457
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh--------------hhhCC------------------hh----HHHHHHHHHHH
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC--------------IGHLT------------------DD----DFVSFFKRAKV 280 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~--------------l~~~~------------------~~----dl~~~l~~l~~ 280 (307)
+|.+.|+...+.....+||+|+++-. ..|-+ ++ -.+.++..+.+
T Consensus 187 ~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~ 266 (1082)
T PLN02672 187 EFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIS 266 (1082)
T ss_pred EEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHH
Confidence 78888776544221237999998622 10100 01 13678888999
Q ss_pred cCCCCcEEEE
Q 021836 281 GLKPGGFFVL 290 (307)
Q Consensus 281 ~LkpGG~lii 290 (307)
.|+|||++++
T Consensus 267 ~L~pgG~l~l 276 (1082)
T PLN02672 267 VIKPMGIMIF 276 (1082)
T ss_pred hccCCCEEEE
Confidence 9999998886
No 158
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.64 E-value=4.8e-07 Score=75.86 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+.+.-|||+|.|||.+|..+|+++.. .++++|.|+++.....+.+...+ ++..+..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-----------ii~gda~---------- 104 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-----------IINGDAF---------- 104 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-----------ccccchh----------
Confidence 346678999999999999999998865 79999999999999999886543 3333332
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++...+. .....||.|+|.-.+..++-....++++.+...|.+||.++-..-
T Consensus 105 ---------~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 105 ---------DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred ---------hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 0000011 135679999999888888766778999999999999999887543
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.62 E-value=9.3e-08 Score=81.85 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+... ...+|+.+|.++ .++.++.++..++.. ....+.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~---~~~~v~-------------------- 100 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSL---LDGRVS-------------------- 100 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------E--------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccc---cccccc--------------------
Confidence 6689999999999999954433 255899999998 999998887654210 011222
Q ss_pred eeeeccCCcCCC---CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~---~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...+..... .....+||+|+++.++.. +.....+++.+.++|+|+|.+++.-.
T Consensus 101 --v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 101 --VRPLDWGDELDSDLLEPHSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp --EEE--TTS-HHHHHHS-SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred --CcEEEecCcccccccccccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2222221111 012468999999999865 34678999999999999998777654
No 160
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.58 E-value=1.7e-07 Score=87.13 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++..|||+|||||.++..-+..+..+|++||.|. +.+.|++.+..+++. ..+.++...++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~-----~ii~vi~gkvE-------------- 119 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLE-----DVITVIKGKVE-------------- 119 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCcc-----ceEEEeecceE--------------
Confidence 5689999999999999966666777999999876 458888888766553 24555555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-hhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+...+.++.|+|++-|.=..+- +.-+..++-.=-+.|+|||.++=
T Consensus 120 ---------di~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 120 ---------DIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ---------EEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 3333357999999876532221 11345555555689999998753
No 161
>PLN02823 spermine synthase
Probab=98.57 E-value=5.5e-07 Score=84.86 Aligned_cols=110 Identities=20% Similarity=0.292 Sum_probs=71.8
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||.||+|.|..+..+++.. ..+|+.||+++.+++.|++.+....-. -.. .+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~d----------------------pr 158 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCD----------------------KR 158 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccC----------------------Cc
Confidence 45789999999999999877743 458999999999999999887532100 001 22
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh--hhhCChhH--HHHHHH-HHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC--IGHLTDDD--FVSFFK-RAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~--l~~~~~~d--l~~~l~-~l~~~LkpGG~lii 290 (307)
++++..|....+....++||+|++-.. ........ -.++++ .+.+.|+|||++++
T Consensus 159 v~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 159 LELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred eEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 334444333233223568999997521 00000000 257888 89999999999876
No 162
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.5e-07 Score=80.61 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.+.+|+|+|||||.+++..+..+..+|+++|+++++++.++++..+. ...+.|++.|+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~ 103 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVS 103 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchh
Confidence 55689999999999999766666679999999999999999998652 234566666665
No 163
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.56 E-value=3.3e-07 Score=85.77 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=67.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|++++...+.. ++.+...|+.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~------~v~~~~~D~~-------------- 231 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLT------NVQFQALDST-------------- 231 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEEEcCHH--------------
Confidence 4578999999999999976554 468999999999999999888654321 2455555544
Q ss_pred eeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. ..++||+|++.-.-.-+. ..+++. ...++|+++++++-+
T Consensus 232 ---------~~~~~~~~~~D~Vv~dPPr~G~~----~~~~~~-l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 232 ---------QFATAQGEVPDLVLVNPPRRGIG----KELCDY-LSQMAPRFILYSSCN 275 (315)
T ss_pred ---------HHHHhcCCCCeEEEECCCCCCcc----HHHHHH-HHHcCCCeEEEEECC
Confidence 2211 235799999874411111 223333 334688888887644
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.53 E-value=3.3e-07 Score=85.69 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=38.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+..+|||||||+|.+...+..+... +++++|+++.+++.|++++...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 5689999999999887755444433 7999999999999999998755
No 165
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.53 E-value=6.4e-08 Score=93.76 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=77.4
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHHHhCCCCCCCccccc
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~--v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~ 212 (307)
...+-..|..+++.... ...-..+||+|||+|.++.+|+.+..-. +..-|..+.+++.|.++-- ..
T Consensus 98 a~~Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv---------pa 165 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV---------PA 165 (506)
T ss_pred HHHHHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc---------ch
Confidence 33444556666653221 1233568999999999999988776541 2222455556666654420 00
Q ss_pred ccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 213 ATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 213 ~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. ....+ .++++++.||+|.|+.++......+ .-+|-++.++|+|||+|+++.
T Consensus 166 ~~~--~~~s~-----------------------rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 166 MIG--VLGSQ-----------------------RLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhh--hhccc-----------------------cccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecC
Confidence 000 11112 6777899999999999877665433 457889999999999999875
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 220 p 220 (506)
T PF03141_consen 220 P 220 (506)
T ss_pred C
Confidence 4
No 166
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.51 E-value=8e-07 Score=81.62 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=75.4
Q ss_pred CCceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||+|||+|..+...... ...+++++|.|+.|++.++..+....... ..........
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-----~~~~~~~~~~------------ 95 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-----NAEWRRVLYR------------ 95 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-----cchhhhhhhc------------
Confidence 5679999999999766643222 23379999999999999988765321100 0000000000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 299 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~ 299 (307)
+.. +....|+|+++++|..+.+.....+++++.+.+.+ .|+++|.-.+.||
T Consensus 96 -----------~~~-~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 96 -----------DFL-PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred -----------ccc-cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 111 11234999999999999887788899999888776 9999998766664
No 167
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.50 E-value=4.9e-07 Score=78.93 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=71.9
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
..+||||||.|.....++...+. .++|+|+....+..+.+++...++. ++.+++.+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~------Nv~~~~~da~--------------- 77 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK------NVRFLRGDAR--------------- 77 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS------SEEEEES-CT---------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc------ceEEEEccHH---------------
Confidence 38999999999999988777776 8999999999999998877654433 2444444433
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.....+ ++++++|-|+.++.=-+.... --..++..+++.|+|||.|.+..
T Consensus 78 ----~~l~~~-~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 78 ----ELLRRL-FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----THHHHH-STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----HHHhhc-ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 000011 236899999986541111100 11689999999999999998864
No 168
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.49 E-value=5e-07 Score=88.07 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+ +....+|+++|+++.|++.|++++...+.. ++.++..+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~l-a~~~~~V~~vE~~~~av~~a~~n~~~~~~~------nv~~~~~d~~~------------- 351 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPL-AKQAKSVVGIEVVPESVEKAQQNAELNGIA------NVEFLAGTLET------------- 351 (431)
T ss_pred CCCEEEEcCCCcCHHHHHH-HHhCCEEEEEEcCHHHHHHHHHHHHHhCCC------ceEEEeCCHHH-------------
Confidence 5579999999999999975 455568999999999999999987644321 24455554430
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
....+....++||+|++.-.-..+ ...+++.+.+ ++|+++++++
T Consensus 352 ------~l~~~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 352 ------VLPKQPWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ------HHHHHHhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 000111124579999975431111 2455555554 7899988875
No 169
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.49 E-value=8.7e-07 Score=84.92 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=69.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|++++...+.. .+.++..++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~------~~~~~~~d~~-------------- 291 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD------NLSFAALDSA-------------- 291 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC------cEEEEECCHH--------------
Confidence 3468999999999999976644 457999999999999999887654321 3455555544
Q ss_pred eeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. ..++||+|++.-.-..+. ..+++.+. .++|++++++.-+
T Consensus 292 ---------~~~~~~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 292 ---------KFATAQMSAPELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---------HHHHhcCCCCCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 2211 124599999865422222 44455554 3799999888644
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=8.1e-07 Score=79.29 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=34.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA 195 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~ 195 (307)
++.+|||+|||||.++..++..+..+|+++|+++.|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 567899999999999998777767789999999988876
No 171
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.44 E-value=1.4e-07 Score=85.35 Aligned_cols=136 Identities=20% Similarity=0.292 Sum_probs=83.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccc-cccc--cCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQRE-KNKK--VGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~--~~~ 233 (307)
++.++||||||+-..-.--+.+.+.+|+..|.++.-++..++.+...+. .+-.....++ ..+++... +.++ +.+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a--~DWs~~~~~v-~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGA--FDWSPFWKYV-CELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS----THHHHHHH-HHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCC--CCccHHHHHH-HhccCCcchhhhHHHHHH
Confidence 5679999999996543322335667999999999999999888765411 1112222222 23332221 1111 124
Q ss_pred ccee-eeccCCcCCCCCCC-----CceeeEEcchhhhhCCh--hHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 234 KKVK-IAKKGISADFTPET-----GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 234 ~~i~-~~~~d~~~~~~~~~-----~~fDlIi~~~~l~~~~~--~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
..|+ ++..|+....+..+ .+||+|++.+++..+.. +.....++++.++|||||.|++..-..
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 4454 66678776554332 35999999999887643 457889999999999999999976543
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.43 E-value=7.1e-07 Score=87.20 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=67.7
Q ss_pred CceEEEEeccccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~-----~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
...|+|+|||+|.++...+... ..+|++||-++.++...+++....++ ..++.++..+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r---------- 251 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMR---------- 251 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TT----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCccc----------
Confidence 5689999999999987555443 24899999999888777665433333 234666666666
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
++.. +.+.|+|++=+.=.....+-..+.+....+.|||||+++
T Consensus 252 -------------~v~l-pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 252 -------------EVEL-PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -------------TSCH-SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -------------CCCC-CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5544 459999997543222222345678888999999999875
No 173
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.43 E-value=7.6e-07 Score=77.33 Aligned_cols=48 Identities=25% Similarity=0.101 Sum_probs=42.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN 204 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~ 204 (307)
.+.++||++||+|.++..+++++..+|+++|.++.+++.+++++...+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~ 96 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK 96 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 457899999999999999888888789999999999999998876543
No 174
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.43 E-value=1.1e-06 Score=79.35 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..|+.+|||.|.|+|.+|..++.... .+|+..|..+...+.|++++...++. ..+.+...|+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-----~~v~~~~~Dv~---------- 102 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-----DNVTVHHRDVC---------- 102 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-----TTEEEEES-GG----------
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-----CCceeEeccee----------
Confidence 45889999999999999997665443 38999999999999999998765542 23444444442
Q ss_pred ccceeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcC-CCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~L-kpGG~lii~e~ 293 (307)
...+.. ..+.+|.|+. .++ +.-..+..+.+.| +|||.|++.-.
T Consensus 103 -----------~~g~~~~~~~~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 103 -----------EEGFDEELESDFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp -----------CG--STT-TTSEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred -----------cccccccccCcccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECC
Confidence 002211 1468999987 344 3367789999999 89999988644
No 175
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.41 E-value=1.7e-07 Score=81.04 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.++||+|+|.|.++.. +++.+.+|++++.|..|..+.+++-- + .....
T Consensus 112 ~~~~lLDlGAGdGeit~~-m~p~feevyATElS~tMr~rL~kk~y-------------n--Vl~~~-------------- 161 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLR-MAPTFEEVYATELSWTMRDRLKKKNY-------------N--VLTEI-------------- 161 (288)
T ss_pred CCeeEEeccCCCcchhhh-hcchHHHHHHHHhhHHHHHHHhhcCC-------------c--eeeeh--------------
Confidence 458999999999999995 67888899999999999999876531 1 11111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC-CcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp-GG~lii~ 291 (307)
++...+-+||+|.|-+.+.... +.-.+++.++.+|+| +|.+|++
T Consensus 162 ---------ew~~t~~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 162 ---------EWLQTDVKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ---------hhhhcCceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 3333355799999999998877 448899999999999 8887774
No 176
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=5.2e-06 Score=73.15 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
-.|+..++... .+.++||+|.=||+.+..++..... +|+++|+++...+.+....+..+. ...+++
T Consensus 62 g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~ 129 (237)
T KOG1663|consen 62 GQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITF 129 (237)
T ss_pred HHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeee
Confidence 45666666532 4578999999999988866555544 899999999999999776654432 344555
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
...+..+ .+.- +.++. +.+.||++|.-. .++.....+.++.+++|+||+|++ ||++.
T Consensus 130 i~g~a~e-----------sLd~----l~~~~--~~~tfDfaFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~-DNvl~ 186 (237)
T KOG1663|consen 130 IEGPALE-----------SLDE----LLADG--ESGTFDFAFVDA-----DKDNYSNYYERLLRLLRVGGVIVV-DNVLW 186 (237)
T ss_pred eecchhh-----------hHHH----HHhcC--CCCceeEEEEcc-----chHHHHHHHHHHHhhcccccEEEE-ecccc
Confidence 5444330 0000 00011 468999999732 233456788999999999998776 89999
Q ss_pred CCcccCCCC
Q 021836 297 SGTFLLSHS 305 (307)
Q Consensus 297 ~~~~~d~~~ 305 (307)
.|++.++..
T Consensus 187 ~G~v~~p~~ 195 (237)
T KOG1663|consen 187 PGVVADPDV 195 (237)
T ss_pred CCcccCccc
Confidence 888777753
No 177
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.36 E-value=2.2e-06 Score=78.76 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=73.7
Q ss_pred ceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
.+||-||.|.|..+..+++.. ..+++.||+++..++.+++.+........ .. +++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dp----------------------Rv~ 133 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DP----------------------RVE 133 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CC----------------------ceE
Confidence 599999999999999887765 45899999999999999999865321110 12 233
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhh--hCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~--~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.-.|..+.......+||+|++--.=. ....-.-..+++.|++.|+++|+++.-
T Consensus 134 i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 134 IIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 333332222222234899999743211 100001278999999999999999885
No 178
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.35 E-value=1.6e-06 Score=77.39 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=77.5
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
..+||||||.|.....++...+. .++|||+....+..|.+++.+.++. ++.+++.|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~------Nlri~~~DA~--------------- 108 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK------NLRLLCGDAV--------------- 108 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC------cEEEEcCCHH---------------
Confidence 47999999999999988887776 8999999999999998888765442 3555555554
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhC------ChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~------~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. +..+++++.|-|+.++.=-+. ..--...+++.+.+.|+|||.|.+.
T Consensus 109 ----~~l-~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 109 ----EVL-DYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred ----HHH-HhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 011 222346699999986541111 0001268999999999999999985
No 179
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.34 E-value=4.4e-06 Score=76.14 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=85.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~---~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..+.+||||.||.|+.-...+.... .+|...|.|+..++..++.+++.++.+ ..+|.+.|.-+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~-----i~~f~~~dAfd~-------- 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED-----IARFEQGDAFDR-------- 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-----ceEEEecCCCCH--------
Confidence 3678999999999999887777655 379999999999999999988766543 234444443200
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~lii~e 292 (307)
..+.......++++.+..+..+++.+ +...++.+.+++.|||++|.+-
T Consensus 201 ------------~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 201 ------------DSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred ------------hHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 01211234579999999999999866 5668999999999999999975
No 180
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.32 E-value=1.9e-06 Score=82.46 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=86.5
Q ss_pred cchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccc
Q 021836 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (307)
Q Consensus 133 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~ 212 (307)
++....+..+.... .+.+||++=|=||.++.+.+..+..+||.||.|...++.|++++.-+++. ..
T Consensus 203 lDqR~~R~~l~~~~----------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~ 268 (393)
T COG1092 203 LDQRDNRRALGELA----------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GD 268 (393)
T ss_pred HHhHHHHHHHhhhc----------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----cc
Confidence 44455555555444 36799999999999999866667779999999999999999998765442 22
Q ss_pred ccceeecCcccccccccccCccceeeeccCCcCCCC---CCCCceeeEEcchh-hhhC------ChhHHHHHHHHHHHcC
Q 021836 213 ATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT---PETGRYDVIWVQWC-IGHL------TDDDFVSFFKRAKVGL 282 (307)
Q Consensus 213 ~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fDlIi~~~~-l~~~------~~~dl~~~l~~l~~~L 282 (307)
...+++.|. +..+. ....+||+|++--. +..- -..+...++..+.++|
T Consensus 269 ~~~~i~~Dv----------------------f~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 269 RHRFIVGDV----------------------FKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred ceeeehhhH----------------------HHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHc
Confidence 233444433 32222 12458999996311 1110 0125688899999999
Q ss_pred CCCcEEEEEec
Q 021836 283 KPGGFFVLKEN 293 (307)
Q Consensus 283 kpGG~lii~e~ 293 (307)
+|||.+++..|
T Consensus 327 ~pgG~l~~~s~ 337 (393)
T COG1092 327 APGGTLVTSSC 337 (393)
T ss_pred CCCCEEEEEec
Confidence 99999999876
No 181
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.30 E-value=3.6e-06 Score=76.56 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=38.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.|++.+++++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhc
Confidence 5679999999999999987665 5579999999999999998764
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.30 E-value=2.4e-06 Score=78.36 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=38.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
++.+|||+|||+|.++..++.... +|+++|+++.|++.+++++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETF 84 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhh
Confidence 567999999999999998766654 7999999999999998876
No 183
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.25 E-value=3.9e-06 Score=77.27 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=82.3
Q ss_pred cccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 131 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
-.++.+..+.++.... .+.+|||+=|=||.++...+..+..+|+.||.|..+++.+++++.-+++.
T Consensus 107 lFlDqR~nR~~v~~~~----------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~---- 172 (286)
T PF10672_consen 107 LFLDQRENRKWVRKYA----------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD---- 172 (286)
T ss_dssp S-GGGHHHHHHHHHHC----------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----
T ss_pred EcHHHHhhHHHHHHHc----------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----
Confidence 3456667777777653 45799999999999999766666678999999999999999998654432
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCC--CCCCceeeEEcchh-hh--hC-ChhHHHHHHHHHHHcCCC
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT--PETGRYDVIWVQWC-IG--HL-TDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fDlIi~~~~-l~--~~-~~~dl~~~l~~l~~~Lkp 284 (307)
...+.++..|+ ...+. ...++||+|++--. +. .+ -..+...++..+.++|+|
T Consensus 173 ~~~~~~~~~Dv----------------------f~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~ 230 (286)
T PF10672_consen 173 LDRHRFIQGDV----------------------FKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKP 230 (286)
T ss_dssp CTCEEEEES-H----------------------HHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEE
T ss_pred ccceEEEecCH----------------------HHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 12233443333 22111 01468999996311 00 00 013677889999999999
Q ss_pred CcEEEEEec
Q 021836 285 GGFFVLKEN 293 (307)
Q Consensus 285 GG~lii~e~ 293 (307)
||.|++..+
T Consensus 231 gG~l~~~sc 239 (286)
T PF10672_consen 231 GGLLLTCSC 239 (286)
T ss_dssp EEEEEEEE-
T ss_pred CCEEEEEcC
Confidence 999988765
No 184
>PRK00536 speE spermidine synthase; Provisional
Probab=98.24 E-value=2.8e-06 Score=77.26 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+||=||.|.|...+++++.- .+|+.||+++.+++.+++.+....- .+. .+++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~--------------~~~----------DpRv 126 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHE--------------VKN----------NKNF 126 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHH--------------hhc----------CCCE
Confidence 56899999999999999987654 5899999999999999998754210 111 1222
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++.. ... +. ..++||+|++-.. .-..+++.+++.|+|||+++.-
T Consensus 127 ~l~~-~~~-~~--~~~~fDVIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 127 THAK-QLL-DL--DIKKYDLIICLQE-------PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEee-hhh-hc--cCCcCCEEEEcCC-------CChHHHHHHHHhcCCCcEEEEC
Confidence 2221 000 11 1368999997532 1167889999999999999874
No 185
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.22 E-value=1.6e-06 Score=78.31 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=69.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+||=||.|.|..+..+++.. ..+++.||+++.+++.|++.+...... ... ++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d----------------------~r 131 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDD----------------------PR 131 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGS----------------------TT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCC----------------------Cc
Confidence 56899999999999999866543 358999999999999999876421100 001 22
Q ss_pred eeeeccCCcCCCCCCCC-ceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETG-RYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~-~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~e 292 (307)
++++..|....+....+ +||+|+.-..-....... -.++++.+.+.|+|||++++-.
T Consensus 132 ~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 132 VRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 33333332212211234 899999632211111111 2789999999999999998854
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.22 E-value=8e-06 Score=74.02 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=38.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++.+|||+|||+|.++..++... ..|+++|+++.+++.+++++.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhC
Confidence 56799999999999999766555 569999999999999988763
No 187
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.21 E-value=7.2e-06 Score=70.88 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=77.2
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
..+++++.+..-..- .....+++|+|+|.|--+..+....+. +++.+|....=+...+......++. ++.
T Consensus 31 ~~~Hi~DSL~~~~~~---~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~------nv~ 101 (184)
T PF02527_consen 31 WERHILDSLALLPFL---PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS------NVE 101 (184)
T ss_dssp HHHHHHHHHGGGGCS----CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S------SEE
T ss_pred HHHHHHHHHHhhhhh---ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC------CEE
Confidence 445677776642221 112227999999999888865555554 7999999998666665554433332 245
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++..++ + .....+||+|++..+- .+..++.-+...+++||.+++.-
T Consensus 102 v~~~R~E-----------------------~-~~~~~~fd~v~aRAv~------~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 102 VINGRAE-----------------------E-PEYRESFDVVTARAVA------PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp EEES-HH-----------------------H-TTTTT-EEEEEEESSS------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEeeec-----------------------c-cccCCCccEEEeehhc------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 5555555 3 2236799999998763 56788899999999999988753
No 188
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.21 E-value=2e-06 Score=74.32 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=69.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.++||+-||+|.++.+.++++..+|+.||.++..+...++++...+.. .....++.|..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-----~~~~v~~~d~~-------------- 102 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-----DKIRVIKGDAF-------------- 102 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-----GGEEEEESSHH--------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-----cceeeeccCHH--------------
Confidence 57899999999999999999999999999999999999999998654332 12233333321
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhH-HHHHHHHHH--HcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAK--VGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~--~~LkpGG~lii~e~ 293 (307)
.+. ........+||+|++--.... . . ...++..+. .+|+++|++++ |+
T Consensus 103 ~~l-----~~~~~~~~~fDiIflDPPY~~-~--~~~~~~l~~l~~~~~l~~~~~ii~-E~ 153 (183)
T PF03602_consen 103 KFL-----LKLAKKGEKFDIIFLDPPYAK-G--LYYEELLELLAENNLLNEDGLIII-EH 153 (183)
T ss_dssp HHH-----HHHHHCTS-EEEEEE--STTS-C--HHHHHHHHHHHHTTSEEEEEEEEE-EE
T ss_pred HHH-----HhhcccCCCceEEEECCCccc-c--hHHHHHHHHHHHCCCCCCCEEEEE-Ee
Confidence 000 011012578999998654321 1 2 366777776 78999998777 55
No 189
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.19 E-value=7.7e-06 Score=75.63 Aligned_cols=103 Identities=22% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+..|||+|||+|.++......+..+|++|+.| +|.+.|++..+.+.+ ..++.++...++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiE-------------- 236 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIE-------------- 236 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccc--------------
Confidence 557899999999999986556677799999975 699999998876543 334445455444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhh-CChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGH-LTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+... +++.|+|++--. .+ +-++...+..-.+++.|||.|.++=
T Consensus 237 ---------dieL-PEk~DviISEPM-G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 237 ---------DIEL-PEKVDVIISEPM-GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ---------cccC-chhccEEEeccc-hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 4433 578999997422 12 1222334444556799999998764
No 190
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.18 E-value=5.8e-06 Score=76.68 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++.+|||||||+|.+|..++.. ..+|+++|+++.|++.+++++..
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHh
Confidence 36679999999999999977665 45799999999999999988753
No 191
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.15 E-value=1.6e-05 Score=74.45 Aligned_cols=112 Identities=18% Similarity=0.120 Sum_probs=75.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++..|+|+|||+|.=+..+|.... ..++.+|+|..+++.+.+++....+. .-.+.-++.++.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p----~l~v~~l~gdy~--------- 142 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS----HVRCAGLLGTYD--------- 142 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC----CeEEEEEEecHH---------
Confidence 556899999999998887766542 26999999999999999888622111 111111233332
Q ss_pred CccceeeeccCCcCCCCC--CCCceeeEEc-chhhhhCChhHHHHHHHHHHH-cCCCCcEEEEE
Q 021836 232 GSKKVKIAKKGISADFTP--ETGRYDVIWV-QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 291 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~--~~~~fDlIi~-~~~l~~~~~~dl~~~l~~l~~-~LkpGG~lii~ 291 (307)
.. ...++. ..+...+|+. ..++.++++++...+|+++++ .|+|||.|++.
T Consensus 143 --------~~--l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 143 --------DG--LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred --------HH--HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 00 000110 1223455554 568999999999999999999 99999998884
No 192
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.13 E-value=1.4e-05 Score=76.09 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=44.6
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.+|||++||+|.++.. +++...+|+++|+++.+++.|++++...+.. ++.++..++.
T Consensus 199 ~~vlDl~~G~G~~sl~-la~~~~~v~~vE~~~~av~~a~~n~~~~~~~------~v~~~~~d~~ 255 (353)
T TIGR02143 199 GDLLELYCGNGNFSLA-LAQNFRRVLATEIAKPSVNAAQYNIAANNID------NVQIIRMSAE 255 (353)
T ss_pred CcEEEEeccccHHHHH-HHHhCCEEEEEECCHHHHHHHHHHHHHcCCC------cEEEEEcCHH
Confidence 4799999999999994 6666678999999999999999988654332 2455555554
No 193
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.12 E-value=4.9e-05 Score=60.01 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=64.2
Q ss_pred EEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
++|+|||+|..+ .+..... ..++++|+++.++..++..... ... ..+.+...+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~---------------- 108 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-----GLVDFVVADAL---------------- 108 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-----CceEEEEeccc----------------
Confidence 999999999976 2222222 2689999999999985544321 100 00122222222
Q ss_pred eccCCcC-CCCCCC-CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 239 AKKGISA-DFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 239 ~~~d~~~-~~~~~~-~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
. ..+... ..||++ +.....+... ....+..+.+.|+|+|.+++.....
T Consensus 109 ------~~~~~~~~~~~~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 109 ------GGVLPFEDSASFDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ------cCCCCCCCCCceeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1 133333 479999 5544434332 5788999999999999999987653
No 194
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.11 E-value=2.4e-05 Score=71.38 Aligned_cols=130 Identities=17% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCC-------------CCc-ccccccceeecCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-------------MAP-DMHKATNFFCVPLQ 222 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~-------------~~~-~~~~~~~~~~~d~~ 222 (307)
.+.+||--|||.|+++..++..++. +.|.|.|-.|+-..+-.+....- .|. ......+ ...+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr--~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLR--PVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCC--ceEeC
Confidence 5689999999999999998888774 99999999998766543321000 000 0000000 01111
Q ss_pred cccccccccCccceeeeccCCcCCCCCC--CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 223 GQREKNKKVGSKKVKIAKKGISADFTPE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+..+.....+++...+|..+-...+ .++||+|+..+.+.-.. ++.+.++.+.++|||||+.|=.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEec
Confidence 1112222233556777777766555443 47999999887665444 7899999999999999977644
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.10 E-value=1.6e-05 Score=75.98 Aligned_cols=57 Identities=21% Similarity=0.132 Sum_probs=44.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.++||++||+|.++.. +++...+|+++|.++.+++.+++++...+.. ++.++..++.
T Consensus 208 ~~vLDl~~G~G~~sl~-la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~------~v~~~~~d~~ 264 (362)
T PRK05031 208 GDLLELYCGNGNFTLA-LARNFRRVLATEISKPSVAAAQYNIAANGID------NVQIIRMSAE 264 (362)
T ss_pred CeEEEEeccccHHHHH-HHhhCCEEEEEECCHHHHHHHHHHHHHhCCC------cEEEEECCHH
Confidence 4799999999999995 5666778999999999999999987654332 3455555554
No 196
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.8e-05 Score=67.37 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=65.3
Q ss_pred CceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+.-++|||||+|..+..+.+.... .+.++|+++.+++..++.+..++. .+..++.|+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------~~~~V~tdl~------------- 103 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------HIDVVRTDLL------------- 103 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------ccceeehhHH-------------
Confidence 467999999999999866555443 579999999999987766543211 1233333333
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcc-------------------hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQ-------------------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~-------------------~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+. .++.|+++.+ |.=..-..+-...++..+-..|.|.|.|++.-
T Consensus 104 ---------~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 104 ---------SGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred ---------hhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 2222 2455555533 11111122235677888889999999999853
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.2e-05 Score=70.00 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=71.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+.||+|+|+|+++..+ .+.. ...+|||.-++.++.+++++...-... . ....=.
T Consensus 82 pG~s~LdvGsGSGYLt~~~-~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~----e--------------~~~~~~ 142 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACF-ARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTS----E--------------SSSKLK 142 (237)
T ss_pred cCcceeecCCCccHHHHHH-HHHhcCCCccccchhhhHHHHHHHHHHHHhhccCc----h--------------hhhhhc
Confidence 7899999999999999854 4322 235999999999999999885321000 0 000011
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.++.+...|-...+. +..+||.|.+... ..+..+++...|+|||.+++-
T Consensus 143 ~~~l~ivvGDgr~g~~-e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYA-EQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCceEEEeCCccccCC-ccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 3345566666654554 4679999998743 244557788889999998873
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.06 E-value=1.2e-05 Score=77.22 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=69.9
Q ss_pred CceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|||++||+|..+..++... ..+|+++|+++.+++.+++++..++..+ ..+++.|..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~------~~v~~~Da~-------------- 117 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN------EKVFNKDAN-------------- 117 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc------eEEEhhhHH--------------
Confidence 3589999999999999765543 3479999999999999999886544321 223444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+....++||+|++.- . . ....++..+.+.+++||+++++
T Consensus 118 ---------~~l~~~~~fD~V~lDP-~---G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 118 ---------ALLHEERKFDVVDIDP-F---G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---------HHHhhcCCCCEEEECC-C---C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 2111135699999853 2 2 2256778877788999999998
No 199
>PRK04148 hypothetical protein; Provisional
Probab=98.05 E-value=7.6e-05 Score=61.03 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=61.5
Q ss_pred CCceEEEEeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~-~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|. ++..+ .....+|+++|+++..++.++++. ..+...|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L-~~~G~~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf------------- 68 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL-KESGFDVIVIDINEKAVEKAKKLG-------------LNAFVDDLF------------- 68 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhC-------------CeEEECcCC-------------
Confidence 45789999999996 77754 454457999999999999987763 233344432
Q ss_pred eeeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.-.+. -..+|+|.+... .++++..+-++++.+. .-++|.
T Consensus 69 ----------~p~~~~y~~a~liysirp-----p~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 69 ----------NPNLEIYKNAKLIYSIRP-----PRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred ----------CCCHHHHhcCCEEEEeCC-----CHHHHHHHHHHHHHcC--CCEEEE
Confidence 11111 357999998765 3467777777777554 345554
No 200
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.04 E-value=2e-05 Score=73.79 Aligned_cols=109 Identities=18% Similarity=0.084 Sum_probs=77.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeec-CcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~ 233 (307)
.+++..|||-=||||.+... +.....+++|+|++..|++-|+.++..++... ..++.. |+.
T Consensus 195 v~~G~~vlDPFcGTGgiLiE-agl~G~~viG~Did~~mv~gak~Nl~~y~i~~------~~~~~~~Da~----------- 256 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIE-AGLMGARVIGSDIDERMVRGAKINLEYYGIED------YPVLKVLDAT----------- 256 (347)
T ss_pred cccCCEeecCcCCccHHHHh-hhhcCceEeecchHHHHHhhhhhhhhhhCcCc------eeEEEecccc-----------
Confidence 45778999999999999886 33344479999999999999999987665322 111122 443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhC-----C--hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHL-----T--DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~-----~--~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+++..+++|.|++--....- . +.-..++++.++++||+||++++.-.
T Consensus 257 ------------~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 257 ------------NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ------------cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 444455679999974322111 1 12358899999999999999999765
No 201
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.04 E-value=2.8e-05 Score=76.46 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=74.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||++||+|.=|..+++... ..|+++|+++.-++.+++++.+.++.| +.+...|..
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n------v~v~~~D~~---------- 174 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN------VALTHFDGR---------- 174 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe------EEEEeCchh----------
Confidence 34778999999999999987766543 379999999999999999987765533 222233322
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEE----cch--hhhh-------CChhH-------HHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIW----VQW--CIGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi----~~~--~l~~-------~~~~d-------l~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ...+.||.|+ |+. ++.. ++..+ ..++|..+.++|||||+|+.+
T Consensus 175 -------------~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 175 -------------VFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred -------------hhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 111 1145799999 442 1221 11111 267899999999999999875
Q ss_pred e
Q 021836 292 E 292 (307)
Q Consensus 292 e 292 (307)
.
T Consensus 242 T 242 (470)
T PRK11933 242 T 242 (470)
T ss_pred C
Confidence 4
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.04 E-value=2.2e-05 Score=78.14 Aligned_cols=127 Identities=17% Similarity=0.046 Sum_probs=80.7
Q ss_pred HHHHHHHHhccCCCcc---CCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 139 EAFLQMLLSDRFPNAR---NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~---~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
..+++.+.+....... ......+||||||.|.++..++...+. .++|+|+....+..+.++....++.| +
T Consensus 326 ~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N------~ 399 (506)
T PRK01544 326 QNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN------F 399 (506)
T ss_pred HHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe------E
Confidence 3444555553332211 224568999999999999987777765 79999999998888877765444332 2
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-----CCh-hHHHHHHHHHHHcCCCCcEE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-----LTD-DDFVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-----~~~-~dl~~~l~~l~~~LkpGG~l 288 (307)
.+++.++. + +. .. .+++++|.|++++.=-+ ... ---..+++.+++.|+|||.|
T Consensus 400 ~~~~~~~~---------------~----~~-~~-~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 400 LLFPNNLD---------------L----IL-ND-LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNL 458 (506)
T ss_pred EEEcCCHH---------------H----HH-Hh-cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEE
Confidence 33333332 0 00 11 24678999998654111 110 01268899999999999999
Q ss_pred EEEe
Q 021836 289 VLKE 292 (307)
Q Consensus 289 ii~e 292 (307)
.+..
T Consensus 459 ~~~T 462 (506)
T PRK01544 459 VFAS 462 (506)
T ss_pred EEEc
Confidence 8853
No 203
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.99 E-value=3.1e-05 Score=66.67 Aligned_cols=110 Identities=23% Similarity=0.218 Sum_probs=69.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-c---------EEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQR 225 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~---------v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (307)
+++..+||--||+|.+.++.+..... . +.|+|+++.+++.|++++...+.. ..+.+...|..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-----~~i~~~~~D~~--- 98 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-----DYIDFIQWDAR--- 98 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-----GGEEEEE--GG---
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-----CceEEEecchh---
Confidence 36679999999999998764333222 2 789999999999999998655432 23344444444
Q ss_pred ccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-CCh-hH----HHHHHHHHHHcCCCCcEEEEEec
Q 021836 226 EKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-LTD-DD----FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 226 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-~~~-~d----l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++..++++|+|+++-.... +.. .+ ...+++.+.++|++...+++.++
T Consensus 99 --------------------~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 99 --------------------ELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp --------------------GGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred --------------------hcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 44434678999999855432 121 11 35678899999999666666544
No 204
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=7e-06 Score=67.41 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+++|+|||.|-++....-.....|.|+|+++..++.++.++.+..+ .+++.++++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------qidlLqcdil-------------- 106 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------QIDLLQCDIL-------------- 106 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------hhheeeeecc--------------
Confidence 5689999999999998643223344899999999999999988765321 2234444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhh
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCI 263 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l 263 (307)
+..+..+.||.++.+..+
T Consensus 107 ---------dle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 107 ---------DLELKGGIFDTAVINPPF 124 (185)
T ss_pred ---------chhccCCeEeeEEecCCC
Confidence 444446889999877544
No 205
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.95 E-value=8.5e-06 Score=77.45 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=83.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+...++|+|||.|.....+..-....++|++.++..+..+........+. ....+...++.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~~~~~~~-------------- 170 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-----NKCNFVVADFG-------------- 170 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-----hhcceehhhhh--------------
Confidence 55689999999999999654434457999999999888877655433221 12222233333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
..+++++.||.+.+..+..|.+ +...++++++++++|||+++..+.+....
T Consensus 171 ---------~~~fedn~fd~v~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 171 ---------KMPFEDNTFDGVRFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ---------cCCCCccccCcEEEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 4556789999999999999999 67999999999999999999987654433
No 206
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.91 E-value=2e-05 Score=69.02 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=64.5
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++..|+|+-||.|.++..++.. ....|+++|++|..++.+++++..+++. ..+..+..|..
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-----~~i~~~~~D~~------------- 162 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-----NRIEVINGDAR------------- 162 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-----TTEEEEES-GG-------------
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-----CeEEEEcCCHH-------------
Confidence 6789999999999999976552 3447999999999999999988655432 22333444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.+.. .+.||-|+++.. + .-..++..+.+.+++||++.
T Consensus 163 ----------~~~~-~~~~drvim~lp--~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 163 ----------EFLP-EGKFDRVIMNLP--E----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------G----TT-EEEEEE--T--S----SGGGGHHHHHHHEEEEEEEE
T ss_pred ----------HhcC-ccccCEEEECCh--H----HHHHHHHHHHHHhcCCcEEE
Confidence 4433 678999998654 1 12457888999999999875
No 207
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.81 E-value=3.2e-05 Score=66.25 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSH 191 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~ 191 (307)
++.++||+||++|.++..++.+. ..+|+++|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999766665 348999999775
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.00019 Score=63.33 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=75.0
Q ss_pred hcHHHHHHHHHhccCCCccCCC-CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccc
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQ-HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~-~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
-..+++++.+...... .. +.+++|||+|.|--+..++....+ +|+.+|....=+...+....+.++.|
T Consensus 49 ~~~rHilDSl~~~~~~----~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n------ 118 (215)
T COG0357 49 LWQRHILDSLVLLPYL----DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN------ 118 (215)
T ss_pred HHHHHHHHHhhhhhcc----cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC------
Confidence 3556666665542111 12 579999999999888754323333 69999998876665555554444432
Q ss_pred cceeecCcccccccccccCccceeeeccCCcCCCCCCCCc-eeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 214 TNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGR-YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 214 ~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+.+++..++ ++... .. ||+|++..+- .+..++.-+...+|+||.+++
T Consensus 119 v~i~~~RaE-----------------------~~~~~-~~~~D~vtsRAva------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 119 VEIVHGRAE-----------------------EFGQE-KKQYDVVTSRAVA------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eEEehhhHh-----------------------hcccc-cccCcEEEeehcc------chHHHHHHHHHhcccCCcchh
Confidence 556666665 44321 23 9999998663 567778888999999888653
No 209
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00013 Score=62.96 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=70.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.++||+=+|+|.++.+.++++...++.||.+...+...+++....+.. ....++..+..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-----~~~~~~~~da~-------------- 103 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-----GEARVLRNDAL-------------- 103 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-----cceEEEeecHH--------------
Confidence 57899999999999999999999999999999999999999988654421 12222222221
Q ss_pred eeeccCCcCCC--CCCCCceeeEEcchhhhhCChhHHHHHHHH--HHHcCCCCcEEEE
Q 021836 237 KIAKKGISADF--TPETGRYDVIWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~--~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~--l~~~LkpGG~lii 290 (307)
..+ ....++||+|+.--.++. .--+....+.. -...|+|+|.+++
T Consensus 104 --------~~L~~~~~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 104 --------RALKQLGTREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred --------HHHHhcCCCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 011 111235999998655431 10011222333 4577999999888
No 210
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.76 E-value=7.4e-05 Score=71.54 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=72.5
Q ss_pred CceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+.+|||+.||+|..++.++.+ +..+|+++|+++..++.+++++..++.. .+.+++.|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~------~~~v~~~Da~------------- 105 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE------NIEVPNEDAA------------- 105 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEchhHH-------------
Confidence 368999999999999988876 4568999999999999999988543321 1233333332
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+.....+||+|..-- + . ....++..+.+.+++||+|+++-
T Consensus 106 ---------~~l~~~~~~fDvIdlDP-f-G----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 106 ---------NVLRYRNRKFHVIDIDP-F-G----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---------HHHHHhCCCCCEEEeCC-C-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence 11111135799998743 2 2 22568889999999999999974
No 211
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00018 Score=69.91 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=79.7
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.++|-+|||.-.++..+...++..|+.+|+|+..++.+..+.... .....+...++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~---------------- 106 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMD---------------- 106 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecch----------------
Confidence 389999999999999988889999999999999999887665321 122334444444
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChh--------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDD--------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~--------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+++++||+|+.-..++++-.+ .....+..++++|+|||.++.+..
T Consensus 107 -------~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 107 -------QLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred -------hccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 556678999999988887775321 124567899999999999877655
No 212
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.67 E-value=5.2e-05 Score=67.08 Aligned_cols=110 Identities=17% Similarity=0.084 Sum_probs=73.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+.+|||...|-|+.++..++++..+|..++.++..++.|.-+-=+.++ .. .
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~----------------------~ 185 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FE----------------------I 185 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cc----------------------c
Confidence 446889999999999999998888887899999999999988643211000 00 1
Q ss_pred ceeeeccCCcCCC-CCCCCceeeEEcchh-hhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 235 KVKIAKKGISADF-TPETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 235 ~i~~~~~d~~~~~-~~~~~~fDlIi~~~~-l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.|+++.+|..+-. .+.+.+||+|+---. |.+...---.++.++++++|||||.++-
T Consensus 186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 1334443322111 225788999984211 2233311237899999999999999875
No 213
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.62 E-value=0.00043 Score=60.86 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=63.6
Q ss_pred CCCCceEEEEeccccHHHHHHH-HhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll-~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..+....+|+|||.|....... ...+.+.+|||+.+...+.|+...... ......+. ...
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~-------~~~~~~~g------------~~~ 100 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEEL-------KKRMKHYG------------KRP 100 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHH-------HHHHHHCT------------B--
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHH-------HHHHHHhh------------ccc
Confidence 4467899999999999876432 234557999999999888887543211 00000000 012
Q ss_pred cceeeeccCCcCC-CCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 234 KKVKIAKKGISAD-FTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 234 ~~i~~~~~d~~~~-~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
..+++.++|.... +... -...|+|++++.+ ++ +++..-|.+....||+|-.++-...+++..+-
T Consensus 101 ~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~~~ 166 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPRRRS 166 (205)
T ss_dssp -EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-TT--
T ss_pred ccceeeccCccccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCCCcc
Confidence 3345555543211 0000 1346999998863 33 35666678888889999888877776666544
No 214
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.57 E-value=5.4e-05 Score=68.81 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+..++|+|||.|..+.. .... .+++.|.+...+..+++.-.. .....|+.
T Consensus 45 ~gsv~~d~gCGngky~~~--~p~~-~~ig~D~c~~l~~~ak~~~~~------------~~~~ad~l-------------- 95 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV--NPLC-LIIGCDLCTGLLGGAKRSGGD------------NVCRADAL-------------- 95 (293)
T ss_pred CcceeeecccCCcccCcC--CCcc-eeeecchhhhhccccccCCCc------------eeehhhhh--------------
Confidence 457899999999977651 2222 589999999888887654310 12233333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~lii~ 291 (307)
..+....+||.+++..++||+.... ...+++++.+.|+|||...+.
T Consensus 96 ---------~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 96 ---------KLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred ---------cCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4555678999999999999986543 578999999999999986553
No 215
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00032 Score=63.59 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=44.1
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..++.+.... ...++..|||||+|.|.+|..++.... +|+++|+++.+++..++...
T Consensus 17 ~v~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 17 NVIDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred HHHHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc
Confidence 3355555422 234578999999999999998766555 59999999999999998874
No 216
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00029 Score=66.30 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=81.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|+|.=||.|.+++.++..+...|+++|++|..++.+++++.-+++.+ .+..+.+|..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~-----~v~~i~gD~r-------------- 248 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEG-----RVEPILGDAR-------------- 248 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccc-----eeeEEeccHH--------------
Confidence 578999999999999997665555569999999999999999987665532 2344455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
...+..+.+|-|+++..- .-..++..+.+.+++||++.+-+++-.+.
T Consensus 249 ---------ev~~~~~~aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 249 ---------EVAPELGVADRIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ---------HhhhccccCCEEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 343333789999987652 33677888889999999999988765443
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.54 E-value=0.00032 Score=70.19 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~---------~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
...+|||.|||+|.+...++.... .+++|+|+++..+..++.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 356899999999999887765432 2689999999999999988753
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.52 E-value=0.00037 Score=63.06 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=42.6
Q ss_pred cCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 154 ~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+.+++..|||+|.|||.+|..++.... +|+++|+++.|+....++....
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gt 103 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGT 103 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCC
Confidence 456889999999999999998877665 5999999999999999987643
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.49 E-value=0.00012 Score=61.83 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=41.8
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.|+|+.||.|..++.+ ++.+.+|+++|+++..++.|+.++.-++. ..++.+++.|..
T Consensus 2 ~vlD~fcG~GGNtIqF-A~~~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~ 58 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF-ARTFDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFF 58 (163)
T ss_dssp EEEETT-TTSHHHHHH-HHTT-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HH
T ss_pred EEEEeccCcCHHHHHH-HHhCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHH
Confidence 5899999999999975 56677899999999999999999876653 334556555553
No 220
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00032 Score=62.41 Aligned_cols=96 Identities=25% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++..+||+|+.||.+|..++.++..+|+++|..-..+..--+.- .+.+.+...++.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r-------------- 134 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVR-------------- 134 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChh--------------
Confidence 67899999999999999988888999999999877665432221 111222222221
Q ss_pred eeeccCCcCCCCCC--CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~--~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+.++ .+..|+|+|--++. .+..+|..+...++|+|.++.
T Consensus 135 ---------~l~~~~~~~~~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 135 ---------YLTPEDFTEKPDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred ---------hCCHHHcccCCCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 11111 23678999866543 567889999999999998776
No 221
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00066 Score=66.20 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
++.++||+=||.|.++.. ++....+|+|+|+++.+++.|+++++.++..| +.|...+.+
T Consensus 293 ~~~~vlDlYCGvG~f~l~-lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N------~~f~~~~ae 351 (432)
T COG2265 293 GGERVLDLYCGVGTFGLP-LAKRVKKVHGVEISPEAVEAAQENAAANGIDN------VEFIAGDAE 351 (432)
T ss_pred CCCEEEEeccCCChhhhh-hcccCCEEEEEecCHHHHHHHHHHHHHcCCCc------EEEEeCCHH
Confidence 567899999999999996 56777789999999999999999998766543 455555544
No 222
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.47 E-value=0.00044 Score=60.74 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=36.9
Q ss_pred CCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcE-----EEEEe
Q 021836 250 ETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGF-----FVLKE 292 (307)
Q Consensus 250 ~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~-----lii~e 292 (307)
+.++||+|.++.+|.+++++. .-+.++++++.|+|+|. |+++-
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 367899999999999998654 67899999999999999 77653
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.45 E-value=0.00026 Score=65.62 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.++..++|++||.|..|..++.... .+|+|+|.++.+++.+++++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 3667999999999999998887764 489999999999999998874
No 224
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.45 E-value=0.00049 Score=59.08 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=70.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
..+.|+|+|+|.++. +++....+|++++.+|.-...|.+++.-.+. .+..++..|..
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~---------------- 90 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDAR---------------- 90 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCCC------cceEEEecccc----------------
Confidence 678999999999998 6777788999999999999999988743322 22334444443
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+ ...|+|+|-..=.-+-++....++..+...||-+|.++=.
T Consensus 91 -------~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 91 -------DYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred -------cccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 4433 4679999864311122234567788888889988887653
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.44 E-value=0.00049 Score=64.02 Aligned_cols=111 Identities=18% Similarity=0.094 Sum_probs=62.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHh--------cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~--------~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
+.++.+|+|-+||+|.+...+... ...+++|+|+++.++..|+-++.-.+.. .....+..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~-------- 111 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQ-------- 111 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEE--------
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccc--------
Confidence 346678999999999998876553 2237999999999999888664211100 01011212
Q ss_pred cccccCccceeeeccCCcCCCCC-CCCceeeEEcchhhhhC--Ch-----------------hHHHHHHHHHHHcCCCCc
Q 021836 227 KNKKVGSKKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGG 286 (307)
Q Consensus 227 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~--~~-----------------~dl~~~l~~l~~~LkpGG 286 (307)
.|....... ....||+|+++-.+... .. ..--.++..+.+.|++||
T Consensus 112 --------------~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G 177 (311)
T PF02384_consen 112 --------------GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGG 177 (311)
T ss_dssp --------------S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEE
T ss_pred --------------cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccc
Confidence 221111111 14689999987443222 00 011358899999999999
Q ss_pred EEEEE
Q 021836 287 FFVLK 291 (307)
Q Consensus 287 ~lii~ 291 (307)
.++++
T Consensus 178 ~~~~I 182 (311)
T PF02384_consen 178 RAAII 182 (311)
T ss_dssp EEEEE
T ss_pred ceeEE
Confidence 86553
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.42 E-value=0.00074 Score=69.95 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred CCceEEEEeccccHHHHHHHHhc-------------------------------------------CCcEEEEeCCHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHFL 193 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-------------------------------------------~~~v~~vD~s~~~l 193 (307)
++..++|.+||+|.+.++.+... ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999887653310 01589999999999
Q ss_pred HHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCC--CCCceeeEEcchhhhh-C-Chh
Q 021836 194 DAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTP--ETGRYDVIWVQWCIGH-L-TDD 269 (307)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fDlIi~~~~l~~-~-~~~ 269 (307)
+.|+.++...++. ..+.+...|+. .+.. ..++||+|+++-.... + ...
T Consensus 270 ~~A~~N~~~~g~~-----~~i~~~~~D~~-----------------------~~~~~~~~~~~d~IvtNPPYg~r~~~~~ 321 (702)
T PRK11783 270 QAARKNARRAGVA-----ELITFEVKDVA-----------------------DLKNPLPKGPTGLVISNPPYGERLGEEP 321 (702)
T ss_pred HHHHHHHHHcCCC-----cceEEEeCChh-----------------------hcccccccCCCCEEEECCCCcCccCchH
Confidence 9999998765442 12334444443 2322 2357999999855322 2 223
Q ss_pred HHHHHHHHHHHcCC---CCcEEEEEe
Q 021836 270 DFVSFFKRAKVGLK---PGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~Lk---pGG~lii~e 292 (307)
++..+...+.+.|+ +|+.+++..
T Consensus 322 ~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 322 ALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 45556555555554 888776654
No 227
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0015 Score=57.25 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=75.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+||++|-|-|.+.-.+-..-+.+=+.++..+..++..+...-.. ..++..+..-.+
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~We-------------- 159 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWE-------------- 159 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchH--------------
Confidence 67899999999998888544444446788999999999988764221 111222222222
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
|....+ +++.||-|+.----.+-. ++..+.+.+.++|||+|+|-+....+.+.
T Consensus 160 -----Dvl~~L--~d~~FDGI~yDTy~e~yE--dl~~~hqh~~rLLkP~gv~SyfNg~~~~~ 212 (271)
T KOG1709|consen 160 -----DVLNTL--PDKHFDGIYYDTYSELYE--DLRHFHQHVVRLLKPEGVFSYFNGLGADN 212 (271)
T ss_pred -----hhhccc--cccCcceeEeechhhHHH--HHHHHHHHHhhhcCCCceEEEecCcccch
Confidence 111123 467899998643223333 78899999999999999998876555554
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.35 E-value=0.0016 Score=53.62 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=45.3
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHH-----hcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~-----~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.....++..+..... ...+..+|+|+|||-|.++..+.. ...-+|+++|.++..++.+.++...
T Consensus 7 ~~~~~~i~~~~~~~~---~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG---ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred HHHHHHHHHHHHHhh---ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 344455555554211 124678999999999999996554 2223899999999999999887654
No 229
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.26 E-value=0.0018 Score=59.00 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=39.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++..|||+|+|+|.+|..++... .+++++|+++.+.+..++++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh
Confidence 67899999999999999877666 789999999999999998874
No 230
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.24 E-value=0.0015 Score=59.91 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CC-cEEEEeCCHHHHHHHHHHhC-CCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~-~v~~vD~s~~~l~~A~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+.+|+=||||+=-+|.-++... .. .|+++|+++..++.+++... ..++ ...+.|.+.+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~---------- 184 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVL---------- 184 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchh----------
Confidence 34699999999887777556542 22 68999999999999987764 1111 233445444443
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+...+-..||+|+..... .++.++-.+++.++.+.++||..+++-
T Consensus 185 -------------~~~~dl~~~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 185 -------------DVTYDLKEYDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -------------GG-GG----SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred -------------ccccccccCCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 222223589999876543 344456789999999999999998885
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.24 E-value=0.00056 Score=59.09 Aligned_cols=98 Identities=18% Similarity=0.107 Sum_probs=65.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|+|+|..++.-+..+...|+..|+.+......+-+.+.+++ .+.+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------~i~~-------------------- 131 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------SILF-------------------- 131 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------eeEE--------------------
Confidence 5789999999999999865556667899999998888777766654432 2222
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
...|+ ..++..||+|+...++..-+ .-..++. +...|+..|.-++
T Consensus 132 --~~~d~----~g~~~~~Dl~LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 132 --THADL----IGSPPAFDLLLAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred --eeccc----cCCCcceeEEEeeceecCch--HHHHHHH-HHHHHHhCCCEEE
Confidence 22222 11467899999988753322 3355555 6666666665444
No 232
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.21 E-value=0.00066 Score=64.60 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM 206 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~ 206 (307)
....++..++.. +. ..+. +|||+-||.|.++.. ++..+.+|+|+|+++.+++.|++++...+..
T Consensus 181 ~~~~l~~~~~~~-l~---~~~~-~vlDlycG~G~fsl~-la~~~~~V~gvE~~~~av~~A~~Na~~N~i~ 244 (352)
T PF05958_consen 181 QNEKLYEQALEW-LD---LSKG-DVLDLYCGVGTFSLP-LAKKAKKVIGVEIVEEAVEDARENAKLNGID 244 (352)
T ss_dssp HHHHHHHHHHHH-CT---T-TT-EEEEES-TTTCCHHH-HHCCSSEEEEEES-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHH-hh---cCCC-cEEEEeecCCHHHHH-HHhhCCeEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 444555555442 22 2233 799999999999995 6777889999999999999999998766544
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0049 Score=58.72 Aligned_cols=113 Identities=22% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
+.++.+|||+.++.|.=|.+++..... .|+++|.++.=+...++++.+.+..| +.....|..
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n------v~~~~~d~~--------- 218 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN------VIVVNKDAR--------- 218 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc------eEEEecccc---------
Confidence 557899999999999888876655443 36999999999999999988776543 222222221
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEc----c--hhhh-------hCChhH-------HHHHHHHHHHcCCCCcEEEEE
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWV----Q--WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~----~--~~l~-------~~~~~d-------l~~~l~~l~~~LkpGG~lii~ 291 (307)
......+..++||.|++ + .+++ ..+..+ ..++|..+.+.|||||.|+.+
T Consensus 219 -----------~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 219 -----------RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred -----------cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 00011112235898883 2 2221 111111 367899999999999999986
Q ss_pred ec
Q 021836 292 EN 293 (307)
Q Consensus 292 e~ 293 (307)
.-
T Consensus 288 TC 289 (355)
T COG0144 288 TC 289 (355)
T ss_pred cc
Confidence 43
No 234
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.00019 Score=59.64 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=46.5
Q ss_pred CCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 246 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 246 ~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
...+.+++.|+|++..++.|++-++...+++.|++.|||||+|-++ .+|.+++|.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA---vPdl~f~~~ 94 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA---VPDLKFLDW 94 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE---cCCcchhHH
Confidence 4455689999999999999999888899999999999999999886 345666553
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.14 E-value=0.00085 Score=57.94 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHH------HHHHhCCCCCCCcccccccceeecCccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDA------ARESLAPENHMAPDMHKATNFFCVPLQGQR 225 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~------A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (307)
.+++.+|+|+=.|.|.+|. +++.... .|+++=+.+...-. .+....+...
T Consensus 46 lkpg~tVid~~PGgGy~Tr-I~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-------------------- 104 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTR-IFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-------------------- 104 (238)
T ss_pred cCCCCEEEEEecCCccHhh-hhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--------------------
Confidence 4588999999999999999 6777543 56666543321100 0000000000
Q ss_pred ccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-----CChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 226 EKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-----LTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 226 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-----~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
.+++.+-..+. .+. ..+..|+++....-|. +......++...+++.|||||.+.+.||....|+-
T Consensus 105 --------aN~e~~~~~~~-A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~ 174 (238)
T COG4798 105 --------ANVEVIGKPLV-ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG 174 (238)
T ss_pred --------hhhhhhCCccc-ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC
Confidence 01111111111 111 2456677775433222 22335688899999999999999999997766543
No 236
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.003 Score=58.35 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee--------------ecCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--------------CVPL 221 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~--------------~~d~ 221 (307)
..+.+||--|||.|+++..+...++. +-|-+.|--|+-...-.+.--...| ....-.|+ ...+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~n--q~~IYPfIh~~sn~~~~dDQlrpi~~ 225 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQEN--QFTIYPFIHQYSNSLSRDDQLRPISI 225 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCC--cEEEEeeeeccccccccccccccccC
Confidence 35679999999999999987766775 7777888777654432221000000 00000000 1111
Q ss_pred ccccccccccCccceeeeccCCcCCCCC--CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 222 QGQREKNKKVGSKKVKIAKKGISADFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+..+++-..+....+...+|..+-... ..+.||+|+.++.+.... ++.+.+..+.+.|||||+.+-.-
T Consensus 226 PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 226 PDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEecc
Confidence 1111222122233344444554433332 235799999887665444 78899999999999999987543
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.10 E-value=0.00099 Score=54.38 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=37.8
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCC
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN 204 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~ 204 (307)
.+||+|||+|..+..++..... +++++|+++.+.+.+++++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~ 46 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN 46 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 4899999999999976665554 79999999999999998876543
No 238
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.10 E-value=0.0015 Score=61.44 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...++|-+|.|.|...+++++. .+.+|+.||.+|.|++.++++..-.. .| ...+. ..+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~-~N----------~~sf~----------dpR 347 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA-LN----------QGSFS----------DPR 347 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh-hc----------cCCcc----------CCe
Confidence 4568999999999999986543 24589999999999999984421100 00 01111 234
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcc------hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQ------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~------~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++...|..+-+....+.||+|+.- .++..+- -.++..-+++.|+++|.+++..
T Consensus 348 v~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 348 VTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred eEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEec
Confidence 5555555443333345689999853 2222211 1577888999999999999854
No 239
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.002 Score=60.38 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=69.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||+|.|+|.-....-.-.+ ..++.++.|+..-+............ ....-..++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~------~td~r~s~vt------------ 174 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE------KTDWRASDVT------------ 174 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc------cCCCCCCccc------------
Confidence 456799999999976653222222 36888888887655544332211110 0011111111
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEeccCCCCc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGT 299 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~ 299 (307)
.-. ..++ ....|++|+..+-+-+... ..+...++.+..++.|||.|+|+|.-.+-||
T Consensus 175 ---~dR----l~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 175 ---EDR----LSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred ---hhc----cCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 000 0222 2457888887766555543 2356689999999999999999998666664
No 240
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0046 Score=58.91 Aligned_cols=109 Identities=16% Similarity=0.076 Sum_probs=71.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC------C----------------------------------cEEEEeCCHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF------N----------------------------------EVDLLEPVSHFLDAA 196 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~------~----------------------------------~v~~vD~s~~~l~~A 196 (307)
+...++|-=||+|.+.++.+-... . .++|+|+++.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 446899999999999886433221 0 277999999999999
Q ss_pred HHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhh-hCChh-HH---
Q 021836 197 RESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIG-HLTDD-DF--- 271 (307)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~-~~~~~-dl--- 271 (307)
+.++...++ ...+.|.+.++. .+..+.+.+|+|+|+-... .+..+ .+
T Consensus 271 k~NA~~AGv-----~d~I~f~~~d~~-----------------------~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~L 322 (381)
T COG0116 271 KANARAAGV-----GDLIEFKQADAT-----------------------DLKEPLEEYGVVISNPPYGERLGSEALVAKL 322 (381)
T ss_pred HHHHHhcCC-----CceEEEEEcchh-----------------------hCCCCCCcCCEEEeCCCcchhcCChhhHHHH
Confidence 999876654 334555555554 4543337899999984421 12221 22
Q ss_pred -HHHHHHHHHcCCCCcEEEEEec
Q 021836 272 -VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 272 -~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.+.+++.++--+.++++.+
T Consensus 323 Y~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 323 YREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHhcCCceEEEEcc
Confidence 3455566677777777777644
No 241
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.97 E-value=0.0022 Score=60.27 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~ 190 (307)
.++.++||+||++|.+|..++.++. +|++||.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 4788999999999999998777766 799999543
No 242
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0051 Score=55.80 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=70.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+|+.+|+|-|.|+|.++..++.... .+++..|....-.+.|++.+.+.++ ..++.+..-|+..
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~--------- 168 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCG--------- 168 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeeccc---------
Confidence 45889999999999999997655543 3899999999888888888876553 4455555555540
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCc-EEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG-~lii~e~ 293 (307)
..+......+|.|+.- ++ ..-..+-.++.+||.+| .|+....
T Consensus 169 ------------~GF~~ks~~aDaVFLD-----lP--aPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 169 ------------SGFLIKSLKADAVFLD-----LP--APWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred ------------CCccccccccceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEeccH
Confidence 0222225678888863 22 22444556666777665 5554333
No 243
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.90 E-value=0.00078 Score=59.22 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=45.8
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
...|+|.-||.|..+..++..+. .|+++|++|.-+..|+.+++-+|.. .++.|+++|.-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~-----~rItFI~GD~l 153 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVP-----DRITFICGDFL 153 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCC-----ceeEEEechHH
Confidence 35799999999999987665555 5999999999999999998877653 25555555543
No 244
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.89 E-value=0.0094 Score=52.76 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=60.4
Q ss_pred cCCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHH----HHHHHHHhCCCCCCCcccccccceeecCcccccc
Q 021836 154 RNNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHF----LDAARESLAPENHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 154 ~~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~----l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
..+++.+||-+|+++|..-.++ +.... .|++|+.|+.. ++.|+++- +.+.+ -.|.. .
T Consensus 70 ~ik~gskVLYLGAasGTTVSHv-SDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-----------NIiPI-l~DAr-~-- 133 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHV-SDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-----------NIIPI-LEDAR-H-- 133 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHH-HHHHTTTSEEEEEESSHHHHHHHHHHHHHST-----------TEEEE-ES-TT-S--
T ss_pred CCCCCCEEEEecccCCCccchh-hhccCCCCcEEEEEecchhHHHHHHHhccCC-----------ceeee-eccCC-C--
Confidence 3568899999999999988865 44333 79999999954 44444432 11111 11111 0
Q ss_pred cccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 227 KNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 227 ~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+ ......-+..|+|++--. + .++.+-++.++...||+||.++++=
T Consensus 134 -P----------------~~Y~~lv~~VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 134 -P----------------EKYRMLVEMVDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -G----------------GGGTTTS--EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -h----------------HHhhcccccccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 0 011112348999997533 1 2255667888999999999988753
No 245
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.79 E-value=0.0059 Score=53.70 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=38.0
Q ss_pred EEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
|+||||--|.+..+++..+.. +++++|+++.-++.|++++...++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l 46 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL 46 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 689999999999998887654 799999999999999999865543
No 246
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0022 Score=53.86 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||+|.|--.++.-+++.... .|..+|-++..++..++....+.... ... +.-+.+....
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~---~ts----c~vlrw~~~~------- 94 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS---LTS----CCVLRWLIWG------- 94 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc---cce----ehhhHHHHhh-------
Confidence 5678999999976666545555443 79999999999988876653321000 000 1111100000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.....+...||.|+|..++-. ++-...+++.+...|+|.|.-++.
T Consensus 95 ----------aqsq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 95 ----------AQSQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred ----------hHHHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEe
Confidence 011113468999999988632 335678889999999999986654
No 247
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.62 E-value=0.0098 Score=55.13 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.4
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
..++||||+|...+-.-+..+.+. +++|+|+++..++.|++++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N 149 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN 149 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc
Confidence 578999999998654424344334 8999999999999999998654
No 248
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.013 Score=51.33 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+++.+|+|+||-+|.++..+...... .|+++|+.|-- ....+.++..|+.. +...+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~-~~~~~---- 101 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITD-EDTLE---- 101 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccC-ccHHH----
Confidence 36789999999999999954444333 49999985411 01124444554430 00000
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcch--------hhhhCChhHH-HHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQW--------CIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~--------~l~~~~~~dl-~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.+.+ ....+|+|++-. ...|..-..+ ...+.-+...|+|||.|++...
T Consensus 102 --------~l~~~l--~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 102 --------KLLEAL--GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred --------HHHHHc--CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 011111 233479998532 2223221122 4456677789999999998654
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.43 E-value=0.014 Score=53.87 Aligned_cols=110 Identities=18% Similarity=0.111 Sum_probs=71.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+.++.|.=|..++.... ..|++.|+++.-+...+.++...+..+ +.....|..
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~------v~~~~~D~~---------- 146 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN------VIVINADAR---------- 146 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS------EEEEESHHH----------
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce------EEEEeeccc----------
Confidence 34778999999999998887766654 389999999999999988887655432 222222211
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEc----ch--hhhhCC-------hhH-------HHHHHHHHHHcC----CCCcE
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWV----QW--CIGHLT-------DDD-------FVSFFKRAKVGL----KPGGF 287 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~----~~--~l~~~~-------~~d-------l~~~l~~l~~~L----kpGG~ 287 (307)
...+ .....||.|++ +. ++..-+ ..+ ..++|+.+.+.+ ||||.
T Consensus 147 ------------~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~ 214 (283)
T PF01189_consen 147 ------------KLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR 214 (283)
T ss_dssp ------------HHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE
T ss_pred ------------cccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe
Confidence 0000 01235888883 21 222211 111 257899999999 99999
Q ss_pred EEEEe
Q 021836 288 FVLKE 292 (307)
Q Consensus 288 lii~e 292 (307)
++.+.
T Consensus 215 lvYsT 219 (283)
T PF01189_consen 215 LVYST 219 (283)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99864
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.0046 Score=60.61 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=48.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeec
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 219 (307)
.+.+..++|+-||||.++.. +++.+.+|+|+++++..++.|+.++..++..| .+|++.
T Consensus 381 l~~~k~llDv~CGTG~igla-la~~~~~ViGvEi~~~aV~dA~~nA~~NgisN------a~Fi~g 438 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLA-LARGVKRVIGVEISPDAVEDAEKNAQINGISN------ATFIVG 438 (534)
T ss_pred CCCCcEEEEEeecCCceehh-hhccccceeeeecChhhcchhhhcchhcCccc------eeeeec
Confidence 34567899999999999995 67888899999999999999999988777655 456555
No 251
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.39 E-value=0.024 Score=51.68 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=75.1
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEecccc--HHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIG--RITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG--~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
....+.|+......+.... .-...||||||.- ..+.++...... +|+.||.+|-.+..++..+....
T Consensus 49 ar~nR~Fl~RaVr~la~~~---GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------ 119 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEA---GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------ 119 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------
T ss_pred HHHHHHHHHHHHHHHHHhc---CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------
Confidence 3466788887776544321 2246999999965 234444444332 89999999999999998876431
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEE
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~li 289 (307)
.....++..|+...+..-.+. .....+.+ +.+. .+++..++||+++ ++...+++.+...|.||.+|+
T Consensus 120 ~g~t~~v~aD~r~p~~iL~~p----------~~~~~lD~-~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ 187 (267)
T PF04672_consen 120 RGRTAYVQADLRDPEAILAHP----------EVRGLLDF-DRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLA 187 (267)
T ss_dssp TSEEEEEE--TT-HHHHHCSH----------HHHCC--T-TS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEE
T ss_pred CccEEEEeCCCCCHHHHhcCH----------HHHhcCCC-CCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEE
Confidence 112445566654111000000 00001111 2222 4556678999977 678999999999999999999
Q ss_pred EEecc
Q 021836 290 LKENI 294 (307)
Q Consensus 290 i~e~~ 294 (307)
++.-+
T Consensus 188 ish~t 192 (267)
T PF04672_consen 188 ISHAT 192 (267)
T ss_dssp EEEEB
T ss_pred EEecC
Confidence 97543
No 252
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.39 E-value=0.00094 Score=51.88 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=36.1
Q ss_pred EEEeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 162 LDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 162 LDiGcGtG~~t~~ll~~~~----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
||+|+..|..+..+++... .+++++|+.+. .+.+++.+...+ ....+.++..+..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-----~~~~~~~~~g~s~--------------- 59 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-----LSDRVEFIQGDSP--------------- 59 (106)
T ss_dssp --------------------------EEEESS-------------GG-----G-BTEEEEES-TH---------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-----CCCeEEEEEcCcH---------------
Confidence 6899999999886655322 26999999885 222222221111 1122333333322
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+....+ ..++||+|+.-.. |-. +.....+..+...|+|||++++-|
T Consensus 60 ----~~l~~~--~~~~~dli~iDg~--H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 60 ----DFLPSL--PDGPIDLIFIDGD--HSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHH--HH--EEEEEEES-----H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHc--CCCCEEEEEECCC--CCH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 000111 1468999997543 211 245667899999999999988743
No 253
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.16 E-value=0.0032 Score=49.48 Aligned_cols=38 Identities=39% Similarity=0.673 Sum_probs=29.6
Q ss_pred ceeeEEcchh--hhhC--ChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 253 RYDVIWVQWC--IGHL--TDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 253 ~fDlIi~~~~--l~~~--~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+||+|+|-.+ ..|+ .|+-+..+++++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 4999998654 2344 445589999999999999999988
No 254
>PHA01634 hypothetical protein
Probab=96.01 E-value=0.022 Score=46.05 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=41.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+.+|+|||++.|..++.++.++...|+++++++...+..+++...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 4679999999999999999989999999999999999999887653
No 255
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.99 E-value=0.0096 Score=58.37 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCCCCCCceeeEEcchhhhhCC-hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 246 DFTPETGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 246 ~~~~~~~~fDlIi~~~~l~~~~-~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.-+.+||+|.+...+.... .-++..++-++-++|+|||+++|-|.
T Consensus 420 ~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 420 AFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred ccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 4444578999999998877654 34578999999999999999999776
No 256
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.019 Score=55.80 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=72.0
Q ss_pred CCCceEEEEeccccHHHHH--HHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIGRITKN--LLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~--ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..+..++|+|.|.|.-.-. .+-+. ...++.||.|..|..............+...-....++..
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~------------- 265 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQ------------- 265 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcc-------------
Confidence 3567888999887754432 22222 2379999999999999887765421111111111111111
Q ss_pred ccceeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHH--HHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 233 SKKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl--~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
.++- ..+.||+|++.+.++++..... ...-..+.+..++||+++++|+-..-|
T Consensus 266 -------------~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 266 -------------RLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred -------------cCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 1221 2456999999999998865432 223345667889999999999855544
No 257
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.82 E-value=0.029 Score=50.68 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
...+||++|+|+|..+..+......+|...|....+.. .+.+....+.... ..........+.|.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~--~~g~~v~v~~L~Wg------------ 150 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALN--QLGGSVIVAILVWG------------ 150 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhh--hcCCceeEEEEecC------------
Confidence 35679999999998887443335557888887554433 3322211111000 00001111111100
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+..+..+ +..+|+|+++.++.+-. ....++..++..|-.+|.+++.-.
T Consensus 151 ----~~~~~~~~~-~~~~DlilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 151 ----NALDVSFRL-PNPFDLILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ----CcccHhhcc-CCcccEEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEe
Confidence 000001111 11299999999876644 557778888888888886555433
No 258
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.76 E-value=0.027 Score=49.10 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+...+.|||||.|.+...+ +..+. -+.|.++-...-+..++++...
T Consensus 60 ~kvefaDIGCGyGGLlv~L-sp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKL-APKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred ccceEEeeccCccchhhhc-cccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 4578999999999999874 55443 6899999999988888877544
No 259
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.74 E-value=0.088 Score=48.33 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=36.9
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+++|+-||.|..+..+...++..+.++|+++..++..+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 689999999999887766677789999999999999888864
No 260
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.38 E-value=0.04 Score=49.63 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=43.5
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
......|+..++.. ..++.+|+|||||.=-++...+..... .++++|++..+++.....+...
T Consensus 89 l~~Ld~fY~~if~~------~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l 152 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR------IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL 152 (251)
T ss_dssp GGGHHHHHHHHCCC------S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhc------CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh
Confidence 34556666666653 225789999999999888865543322 7999999999999998776433
No 261
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.27 E-value=0.031 Score=46.02 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=50.9
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcch
Q 021836 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQW 261 (307)
Q Consensus 182 ~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~ 261 (307)
+|+++|+-+.+++..++++.+.+.. .++.++..+-+ .+. ...+ .+++|+++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-----~~v~li~~sHe-------------------~l~-~~i~-~~~v~~~iFNL 54 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-----DRVTLILDSHE-------------------NLD-EYIP-EGPVDAAIFNL 54 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-----SGEEEEES-GG-------------------GGG-GT---S--EEEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-----CcEEEEECCHH-------------------HHH-hhCc-cCCcCEEEEEC
Confidence 5899999999999999998765432 23444433322 111 1211 25789888663
Q ss_pred hhhhCChh---------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 262 CIGHLTDD---------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 262 ~l~~~~~~---------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. |++.. .-...++.+.+.|+|||.++++--
T Consensus 55 G--YLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 55 G--YLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp S--B-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred C--cCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEe
Confidence 3 44322 246778999999999999998643
No 262
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.27 E-value=0.22 Score=44.07 Aligned_cols=48 Identities=21% Similarity=0.068 Sum_probs=40.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN 204 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~ 204 (307)
.+.+++||||--+++..+++..... .+++.|+++..++.|.+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~ 64 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN 64 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC
Confidence 4456999999999999988877654 89999999999999998886543
No 263
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.03 E-value=0.14 Score=47.61 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=76.7
Q ss_pred CCceEEEEeccccHHHHHHHHhc-------C--------------CcEEEEeCCH--HHHHHHHHHhCCCCCCCcccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVS--HFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-------~--------------~~v~~vD~s~--~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
+..+||.||.|.|.-...+.+.. . -+|++||+.+ ..++.....+....... +
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~s----k- 160 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLS----K- 160 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcc----c-
Confidence 34799999999986555443322 0 1689999876 46666666664432111 0
Q ss_pred cceeecCcccccccccccCccceeeeccCCcCCCCCC------CCceeeEEcchhhhhC---ChhHHHHHHHHHHHcCCC
Q 021836 214 TNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPE------TGRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 214 ~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~fDlIi~~~~l~~~---~~~dl~~~l~~l~~~Lkp 284 (307)
+ ..... ........-+++|.+.|+..-.... ....|+|...+++.-+ ....-.++|.++...++|
T Consensus 161 --~-a~~~~---~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~ 234 (315)
T PF11312_consen 161 --Y-ASAAN---WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP 234 (315)
T ss_pred --c-ccccc---cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC
Confidence 0 00000 0001123456788888876433211 1257889887776543 122447899999999999
Q ss_pred CcEEEEEec
Q 021836 285 GGFFVLKEN 293 (307)
Q Consensus 285 GG~lii~e~ 293 (307)
|-+|+|+|.
T Consensus 235 GslLLVvDS 243 (315)
T PF11312_consen 235 GSLLLVVDS 243 (315)
T ss_pred CcEEEEEcC
Confidence 999999986
No 264
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.29 Score=42.86 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=63.6
Q ss_pred cCCCccCCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccc
Q 021836 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 149 ~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
.+...+.+++.+||=+|+.+|....++..-.. ..+++|+.|+.+....-.....- .+.+.+ -.|.. .
T Consensus 68 Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-------~Ni~PI-L~DA~----~ 135 (231)
T COG1889 68 GLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-------PNIIPI-LEDAR----K 135 (231)
T ss_pred CcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-------CCceee-ecccC----C
Confidence 44444567899999999999998887543322 37999999998655443333211 001111 11111 0
Q ss_pred ccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 228 NKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++ ....--+..|+|+.--+ .+.+.+-+..++...||+||+++++
T Consensus 136 P~----------------~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 136 PE----------------KYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cH----------------HhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 00 11111245788886322 1123455677889999999966553
No 265
>PRK10742 putative methyltransferase; Provisional
Probab=94.88 E-value=0.051 Score=49.07 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=36.5
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
+|||+-+|+|..+..++..+.. |+++|-++.+....+..+..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHH
Confidence 8999999999999977777665 99999999998888877653
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.81 E-value=0.1 Score=50.18 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCCceeeEEcchhhhhCCh------------------------------------hHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 249 PETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 249 ~~~~~fDlIi~~~~l~~~~~------------------------------------~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++.++.+++++++++|+++. .|+..+|+.=++-|.|||.++++=
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 35788899999888887752 123445555567789999999864
No 267
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.67 E-value=0.077 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=16.3
Q ss_pred CCCceEEEEeccccHHHHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLI 177 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~ 177 (307)
....+|+|+||..|..|..++.
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3568999999999999886655
No 268
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.49 E-value=0.066 Score=51.76 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=40.9
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
...+||||.|||.++......+...|++++.-..|.+.|++.....++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 467999999999999865556777999999999999999998876655
No 269
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.32 Score=43.87 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHHh-CCCCCCCcccccccceeecCcccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESL-APENHMAPDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-----~~v~~vD~s~~~l~~A~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
.....+|+|+|+..-+..++..+. .+++.+|+|...+....+.+ ..+. +..+.-++.+.+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~-------- 143 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYE-------- 143 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHH--------
Confidence 468899999999988886666543 27999999999887654433 2221 111222233332
Q ss_pred cCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 231 VGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.. ...++ ..++-=.++...++.+++..+-..|+.++...|+||-+|++.
T Consensus 144 ----------~~-La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 144 ----------LA-LAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred ----------HH-Hhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 00 00121 122233444556789999888999999999999999998884
No 270
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.44 E-value=0.056 Score=50.36 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++..++|.-+|.|..+..++.... .+|+|+|.++.+++.+++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3667899999999999998887653 5899999999999999988754
No 271
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.33 E-value=0.061 Score=49.52 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=70.9
Q ss_pred CCCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..+.++|=||.|.|.+......+ .+.+++.+|+....++..++.++..... -....+.....
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iG--------------- 182 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIG--------------- 182 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEec---------------
Confidence 35678999999999988865443 3448999999999999998887543110 01222222222
Q ss_pred ceeeeccCCcCCCCC-CCCceeeEEcch--hhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTP-ETGRYDVIWVQW--CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~-~~~~fDlIi~~~--~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|-...+.. ..++||+|+.-- ...-.-..-.+.+++.+.+.||+||+++...-
T Consensus 183 -------DG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 183 -------DGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred -------cHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 21111111 257899999532 11111111246788999999999999988653
No 272
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.14 E-value=0.11 Score=46.29 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCCceEEEEeccccHHHHHHHH-hcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLI-RYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~-~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
.+..++||||.|.--+-. ++- +.+. +.+|.|+++..++.|+..+..+
T Consensus 77 ~~~i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~~ii~~N 125 (292)
T COG3129 77 GKNIRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAKAIISAN 125 (292)
T ss_pred cCceEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHHHHHHcC
Confidence 467899999877653322 221 1222 7899999999999999887654
No 273
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.95 E-value=0.25 Score=47.61 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=42.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMA 207 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~ 207 (307)
+.++.||||..+-+|.=|.++++-.- ..|++.|.+..-+...+.++.+.++.|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n 293 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN 293 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc
Confidence 56889999999999987776655433 379999999999999998887776543
No 274
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=0.16 Score=50.20 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=77.0
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHh---cCC--cEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~---~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
+.+..++. ..+....+....|+-+|+|-|-+....+.. ... +++++|-+|.++-..+.+.. .. ...++
T Consensus 351 Ai~~AL~D-rvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~~-----W~~~V 423 (649)
T KOG0822|consen 351 AILKALLD-RVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-EC-----WDNRV 423 (649)
T ss_pred HHHHHHHh-hCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-hh-----hcCee
Confidence 34444444 322222223568899999999776655443 122 68999999998877765321 11 24456
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHH-HHHHHHHHHcCCCCcEEEE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl-~~~l~~l~~~LkpGG~lii 290 (307)
.++..|+. .|.++..+.|++++- .|.-|.+.++ .+.|.-+.+.|||+|+.|=
T Consensus 424 tii~~DMR-----------------------~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 424 TIISSDMR-----------------------KWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred EEEecccc-----------------------ccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 66666666 676545789998863 3444544343 6789999999999998764
No 275
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.4 Score=39.95 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.+..-++.+++-. . .++..+.+|+|+|.|++-......+...-+|++.++-.+..++-+.
T Consensus 56 AtteQv~nVLSll-~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a 115 (199)
T KOG4058|consen 56 ATTEQVENVLSLL-R---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHA 115 (199)
T ss_pred ccHHHHHHHHHHc-c---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHH
Confidence 3444555555522 2 3466899999999999887544444346899999999998887554
No 276
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.87 E-value=0.66 Score=41.67 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=53.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+||-+|=..-......+.....+|+.+|+++.+++..++.+.+.++ . |
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~----------------------i 94 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------P----------------------I 94 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------------------------------E
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------c----------------------e
Confidence 4678999985554322212334456999999999999999877654332 1 2
Q ss_pred eeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCc
Q 021836 237 KIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 286 (307)
Q Consensus 237 ~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG 286 (307)
+....|+...++.+ .++||++++.-.- +.+.+.-|+.+....||..|
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPy---T~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPY---TPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---S---SHHHHHHHHHHHHHTB-STT
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCC---CHHHHHHHHHHHHHHhCCCC
Confidence 33444444455442 5899999985431 12357888999999998777
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.19 E-value=0.54 Score=44.45 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=64.1
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+++.+|+=+|+| .|..+..++.....+|+++|.|++-++.|++.-... ++.....
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------------~i~~~~~----------- 220 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------------VINSSDS----------- 220 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------------EEEcCCc-----------
Confidence 4577888888876 445666666655578999999999999998764321 1111100
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
+ ....-.+.||+|+..-. ...+....+.|++||.++++-+..
T Consensus 221 --------~---~~~~~~~~~d~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 221 --------D---ALEAVKEIADAIIDTVG---------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred --------h---hhHHhHhhCcEEEECCC---------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 0 01001234999987543 234677788899999999987763
No 278
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.05 E-value=0.37 Score=42.58 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=32.7
Q ss_pred CCCceEEEEeccccHHHHHHHHh----cCCcEEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR----YFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~----~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..+.+++|-.||.|++.- ++.- ...+|.+.|+++.+++.|++++.
T Consensus 50 ~~p~tLyDPCCG~gyLLT-VlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLT-VLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT-TTSHHHH-HHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHH-HHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 367899999999998765 2332 23479999999999999998874
No 279
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.01 E-value=0.41 Score=44.70 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++..++|.--|.|..+..+|..... +|+|+|.++.+++.+++++..
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~ 66 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK 66 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh
Confidence 46789999999999999999987654 899999999999999988754
No 280
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.84 E-value=0.23 Score=47.78 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||.=+|+|.=++..+.. ...+|+.-|+|+.+++..++++..+++.+ ..+.+.+.|..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn------------ 112 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDAN------------ 112 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HH------------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHH------------
Confidence 4579999999999877766666 34589999999999999999976544321 12233333332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.-+......||+|=.- -+. ....++..+.+.++.||+|.++-.
T Consensus 113 ----------~ll~~~~~~fD~IDlD----PfG--Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 113 ----------VLLYSRQERFDVIDLD----PFG--SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----------HHHCHSTT-EEEEEE------SS----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----------HHhhhccccCCEEEeC----CCC--CccHhHHHHHHHhhcCCEEEEecc
Confidence 1111135789999542 122 347889999999999999999754
No 281
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.78 E-value=0.31 Score=42.27 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=40.5
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.-+..+++.++... .+++..|||.=||+|..+.. +.....+.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~a-a~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVA-AEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHH-HHHTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHH-HHHcCCeEEEEeCCHHHHHHhcC
Confidence 34556777776533 23788999999999999984 55566689999999999999864
No 282
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.68 E-value=0.092 Score=48.06 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=30.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD 194 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~ 194 (307)
....+|||+|||+|.-.+.........++..|.+...++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 367899999999998887654455457899998887774
No 283
>PRK11524 putative methyltransferase; Provisional
Probab=92.52 E-value=0.44 Score=43.86 Aligned_cols=59 Identities=17% Similarity=0.056 Sum_probs=47.5
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
-+..+++.++... .+++..|||.=||+|..+.. +.....+.+|+|++++.++.|++++.
T Consensus 193 kP~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4456777776533 23788999999999999984 55666689999999999999999975
No 284
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=92.43 E-value=0.095 Score=46.94 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=43.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.+|||+-+|-|..+. +++....+|+++|-||-+....+.-+.... .+.. ....-..+|++
T Consensus 77 ~~VLDaTaGLG~Da~-vlA~~G~~V~~lErspvia~Ll~dGL~r~~--------------~~~~-----~~~~~~~ri~l 136 (234)
T PF04445_consen 77 PSVLDATAGLGRDAF-VLASLGCKVTGLERSPVIAALLKDGLKRAQ--------------QDPE-----LLAEAMRRIQL 136 (234)
T ss_dssp --EEETT-TTSHHHH-HHHHHT--EEEEE--HHHHHHHHHHHHHHH--------------HSTT-----THHHHHHHEEE
T ss_pred CEEEECCCcchHHHH-HHHccCCeEEEEECCHHHHHHHHHHHHHHH--------------hCcH-----hHHHHHhCCEE
Confidence 489999999999999 455444579999999987666554332110 0000 00001345777
Q ss_pred eccCCcCCCCCCCCceeeEEcc
Q 021836 239 AKKGISADFTPETGRYDVIWVQ 260 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~ 260 (307)
.+.|....+..++++||+|++-
T Consensus 137 ~~~d~~~~L~~~~~s~DVVY~D 158 (234)
T PF04445_consen 137 IHGDALEYLRQPDNSFDVVYFD 158 (234)
T ss_dssp EES-CCCHCCCHSS--SEEEE-
T ss_pred EcCCHHHHHhhcCCCCCEEEEC
Confidence 7777665555457899999954
No 285
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.31 E-value=0.16 Score=42.78 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=39.3
Q ss_pred CCceeeEEcchhhhhCC-----hh----HHHHHHHHHHHcCCCCcEEEEEeccCCCCcccC
Q 021836 251 TGRYDVIWVQWCIGHLT-----DD----DFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 302 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~~~-----~~----dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d 302 (307)
.++||++.|..++.|+. ++ --...+.++..+|||||.|++.-.+..+.....
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fN 121 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFN 121 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEe
Confidence 57899999998888862 11 114568899999999999999888777665443
No 286
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=90.96 E-value=0.77 Score=41.33 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHH----HHHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSH----FLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~----~l~~A~~~ 199 (307)
.++..+||-+|+++|..-.++ +.... -|++|+.|+. .+..|+++
T Consensus 154 ikpGsKVLYLGAasGttVSHv-SDiVGpeG~VYAVEfs~rsGRdL~nmAkkR 204 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHV-SDIVGPEGCVYAVEFSHRSGRDLINMAKKR 204 (317)
T ss_pred ecCCceEEEeeccCCceeehh-hcccCCCceEEEEEecccchHHHHHHhhcc
Confidence 457899999999999876654 44332 6999998874 44455444
No 287
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=90.86 E-value=0.44 Score=37.46 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~ 188 (307)
...|+-.+...... ..+....+|+|||+|.+..-+...++. =.|+|.
T Consensus 42 IAAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 34555555543332 235568999999999998855555553 577775
No 288
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.81 E-value=0.3 Score=44.06 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~---------~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+.+|+|+|+|+|.++..++.... -+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 358999999999999998887532 1699999999999988888765
No 289
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.70 E-value=0.56 Score=41.19 Aligned_cols=112 Identities=7% Similarity=0.067 Sum_probs=47.6
Q ss_pred CCceEEEEeccccHHHHHHHH---hc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLI---RY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~---~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++..|+|+|.-.|..+..++. .. ..+|+++|+.....+.. .++..+ ...+++++..+..+.+...+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp-----~~~rI~~i~Gds~d~~~~~~-- 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP-----MSPRITFIQGDSIDPEIVDQ-- 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHT--
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc-----ccCceEEEECCCCCHHHHHH--
Confidence 457899999999988774432 22 13899999954332221 111100 01334444433321000000
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..... ......+|+.-. +|.. +.....|+.....+++|+++++-|.
T Consensus 103 ------------v~~~~-~~~~~vlVilDs--~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 103 ------------VRELA-SPPHPVLVILDS--SHTH-EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp ------------SGSS-----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred ------------HHHhh-ccCCceEEEECC--CccH-HHHHHHHHHhCccCCCCCEEEEEec
Confidence 00111 112334555322 1322 1456678889999999999998664
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.16 E-value=1.4 Score=42.06 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||..|||. |..+..++..... ++++++.++..++.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 34667899999988 7787776666553 599999999999998875
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.06 E-value=1.3 Score=41.47 Aligned_cols=41 Identities=20% Similarity=0.049 Sum_probs=35.1
Q ss_pred EEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
|+|+-||.|.++..+-..++.-+.++|+++...+.-+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 58999999999998766777778899999999998888764
No 292
>PRK13699 putative methylase; Provisional
Probab=89.75 E-value=1.3 Score=39.58 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=45.3
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+..++..++... .+++..|||.=||+|..+.. +.....+.+|+|+++...+.+.+++..
T Consensus 148 kP~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~a-a~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 148 KPVTSLQPLIESF-----THPNAIVLDPFAGSGSTCVA-ALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CcHHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHH-HHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 3445666665422 23678999999999999884 445555799999999999999888743
No 293
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.77 E-value=1.2 Score=42.66 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
+-..++|+|+|.|.++. +++-.++ .|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr-~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSR-FLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHH-HHhhccCceEEEeccchHHHHHHHH
Confidence 44679999999999999 4555544 89999999888877753
No 294
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=88.66 E-value=4.2 Score=40.57 Aligned_cols=45 Identities=13% Similarity=-0.077 Sum_probs=33.7
Q ss_pred CCceEEEEeccccHHHHHHHHhc---C--CcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY---F--NEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~---~--~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+..+|.|-.||+|.......... . ..++|.|+++.....|+-++-
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~ 235 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI 235 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH
Confidence 45699999999997765433221 1 248999999999999987763
No 295
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.64 E-value=3 Score=38.72 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
++++...+|.--|.|..+..+|..+. .+++++|.++.+++.|++.+..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 44678999999999999999999986 3799999999999999998754
No 296
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.10 E-value=3.6 Score=41.25 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=34.0
Q ss_pred CCCCceEEEEecccc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG-~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+|+=+|||.= ..+...+.....+|+++|.++.-++.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 346899999999974 444444444444899999999999998763
No 297
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=87.89 E-value=1.2 Score=40.96 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=36.6
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+++|+=||.|.++..+-..++..+.++|+++...+.-+.++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 689999999999998777788889999999999999888874
No 298
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.89 E-value=1.2 Score=38.69 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCceEEEEeccccHHHHHHHHh---cC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~---~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++..|+|+|.-.|..+..++.. .. -+|.++|++-..++.+.... ..+.|+..+-.+.....|
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~-----------p~i~f~egss~dpai~eq-- 135 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV-----------PDILFIEGSSTDPAIAEQ-- 135 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC-----------CCeEEEeCCCCCHHHHHH--
Confidence 4578999999999887754432 12 27999999877665543321 234454443321111111
Q ss_pred CccceeeeccCCcCCCCCCCCce-eeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 232 GSKKVKIAKKGISADFTPETGRY-DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~f-DlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
++ .. .+.| -+.+|-.+-|++. ...+.++.+..+|.-|-++++-|.+.
T Consensus 136 ---------i~---~~---~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 136 ---------IR---RL---KNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred ---------HH---HH---hcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEecccc
Confidence 10 01 1112 2233334444544 45667888889999999999877543
No 299
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.57 E-value=0.66 Score=44.69 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=48.8
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
-.+|++...++.+-+. .+++++|.++....+.+|++.++.+.++.+.+.++|||.+++-.-
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 3556666665544332 247899999999999999999999999999999999999998543
No 300
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.48 E-value=2.6 Score=39.67 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=38.7
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..+++|+=||.|.+...+-..++.-+.++|+++..++.-+.++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 46899999999999998777788889999999999998888774
No 301
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=86.79 E-value=3.1 Score=35.24 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=32.4
Q ss_pred CCCceeeEEcchhhhhCC-------------hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 250 ETGRYDVIWVQWCIGHLT-------------DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 250 ~~~~fDlIi~~~~l~~~~-------------~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.||.|+-++. |.. ..-+..+++.+..+|+++|.+.|+-.
T Consensus 72 ~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 72 KNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred cCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4678999998765 333 12357899999999999999998644
No 302
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.78 E-value=1.9 Score=41.14 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=67.8
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|+|.=+|||.=++.++..... +|+.-|+||..++.++++...+...+ ...+..|..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~------~~v~n~DAN-------------- 112 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED------AEVINKDAN-------------- 112 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc------ceeecchHH--------------
Confidence 578999999999877766555444 79999999999999999886441111 111111111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.-+......||+|=.- -+. ....++..+.+.++.||++.++-.
T Consensus 113 --------~lm~~~~~~fd~IDiD----PFG--SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 113 --------ALLHELHRAFDVIDID----PFG--SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred --------HHHHhcCCCccEEecC----CCC--CCchHHHHHHHHhhcCCEEEEEec
Confidence 0111113678887431 222 237788899999999999999754
No 303
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.67 E-value=3 Score=39.22 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=34.8
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.+.+.++|=+|+|+ |..+...++. +..+|+.+|+++.-++.|++ +.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~G 214 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FG 214 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hC
Confidence 45788999999997 4555533333 34489999999999999998 53
No 304
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.50 E-value=12 Score=33.07 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=67.1
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccH--HHHHHH--Hhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLL--IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~--~t~~ll--~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
+...+||..+... .....|+++.|+.|. .+..|. ++. ..++++|-+.+..+...++.+...+..
T Consensus 27 p~~aEfISAlAAG-------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~---- 95 (218)
T PF07279_consen 27 PGVAEFISALAAG-------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS---- 95 (218)
T ss_pred CCHHHHHHHHhcc-------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc----
Confidence 4567888887752 234678898766442 344332 232 337999999888887777777544332
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHH-HHHHHHHHcCCCCcEEE
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~-~~l~~l~~~LkpGG~li 289 (307)
....|+..+.. ++..+.-...|+++.-.- ..+.. .+|+.+. +.|.|-++
T Consensus 96 -~~vEfvvg~~~----------------------e~~~~~~~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVV 145 (218)
T PF07279_consen 96 -DVVEFVVGEAP----------------------EEVMPGLKGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVV 145 (218)
T ss_pred -ccceEEecCCH----------------------HHHHhhccCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEE
Confidence 22334333211 012112345777765321 11333 5555433 56779999
Q ss_pred EEeccCC
Q 021836 290 LKENIAR 296 (307)
Q Consensus 290 i~e~~~~ 296 (307)
+..|...
T Consensus 146 V~~Na~~ 152 (218)
T PF07279_consen 146 VCYNAFS 152 (218)
T ss_pred EEecccc
Confidence 9888655
No 305
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=86.37 E-value=3.5 Score=37.83 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||..|+| .|..+..++.....+|++++.++...+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 356788888876 3666666655555579999999998888855
No 306
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=86.13 E-value=7.4 Score=35.37 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=32.5
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.--++++-.++.|++.++...+++.+.+...||+.+++
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 34577778889999999999999999998889888776
No 307
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.11 E-value=3.9 Score=38.25 Aligned_cols=97 Identities=21% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCceEEEEecc-ccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+||=.||| .|..+..++... ..+|+++|.++.-++.+++. ... ..++....++.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~--------~vi~~~~~~~~------------ 227 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD--------KLVNPQNDDLD------------ 227 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc--------EEecCCcccHH------------
Confidence 46678878764 233344333333 33699999999999888763 211 00111000010
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+....+.+|+|+-.-. . ...+..+.+.|++||.+++...
T Consensus 228 -----------~~~~~~g~~D~vid~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 228 -----------HYKAEKGYFDVSFEVSG-----H---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----------HHhccCCCCCEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 11111235899885321 1 2346677888999999998753
No 308
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.01 E-value=1.1 Score=46.32 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=34.5
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcch-hhhhCChhHH--HHHHHHHHHcCCCCcEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQW-CIGHLTDDDF--VSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~~dl--~~~l~~l~~~LkpGG~lii 290 (307)
++++...|....+..-...+|+|+.-. +-..- +++ .++++.+.++++|||.|+-
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~n--p~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKN--PDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCccC--hhhccHHHHHHHHHHhCCCCEEEE
Confidence 455555665443332235699999642 22121 232 7899999999999999884
No 309
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.50 E-value=3.3 Score=39.22 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=60.8
Q ss_pred CCceEEEEeccc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
+..+|+=+|||+ |.++..+++.. ..+|+.+|.++.-++.|++........+.... +.. .+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~--------~~~-----~~----- 229 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED--------DAG-----AE----- 229 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc--------cHH-----HH-----
Confidence 334899999997 44444333332 35899999999999999986543211100000 000 00
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.. ... ....+|+++-.-. ....+..+.++++|||.+++.-..
T Consensus 230 -----~~----~~t-~g~g~D~vie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 230 -----IL----ELT-GGRGADVVIEAVG--------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -----HH----HHh-CCCCCCEEEECCC--------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 00 110 1236999984322 144688899999999999987554
No 310
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.50 E-value=0.74 Score=45.33 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=68.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||.=|++|.-++..+.... .+|++-|.++..++..+++....+..+ .+.....|..
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~-----ive~~~~DA~----------- 171 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVED-----IVEPHHSDAN----------- 171 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchh-----hcccccchHH-----------
Confidence 3678999999999988887666544 389999999999998888875432211 1111111110
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ++-........||+|=.-- +. ....||..+.+.++.||+|+++-.
T Consensus 172 ------~--lM~~~~~~~~~FDvIDLDP----yG--s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 172 ------V--LMYEHPMVAKFFDVIDLDP----YG--SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ------H--HHHhccccccccceEecCC----CC--CccHHHHHHHHHhhcCCEEEEEec
Confidence 0 0001111246899995421 11 236788889999999999999643
No 311
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.28 E-value=1.5 Score=39.15 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=26.5
Q ss_pred CCceeeEEcchh-----hhhCCh----hHHHHHHHHHHHcCCCCcEEEE
Q 021836 251 TGRYDVIWVQWC-----IGHLTD----DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 251 ~~~fDlIi~~~~-----l~~~~~----~dl~~~l~~l~~~LkpGG~lii 290 (307)
..+.|+|+|-.. +|.++. .-+...|.-...+|||||.|+-
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 457899998643 333321 1234566777889999999874
No 312
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.10 E-value=2.2 Score=40.54 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=38.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc---------CCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~---------~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
.+..++|+|+|+|.++..+++.. ..++..||+|+.....=++.++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 56789999999999999887753 127999999999988877777644
No 313
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.02 E-value=12 Score=37.13 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=37.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
...+++|+=||.|.++..+-..++..|.++|+++.+.+.-+.++
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 46799999999999999876667777899999998888777765
No 314
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.98 E-value=5.8 Score=34.77 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.++.+||-.|+|. |..+..++.....+|++++.++...+.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 3677899999985 6666655555556899999998887777543
No 315
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=84.91 E-value=1.1 Score=38.81 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC---CcEEEEeC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEP 188 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~---~~v~~vD~ 188 (307)
+++.+|||+||.+|.++.- +.... +-|.|||+
T Consensus 68 ~p~~~VlD~G~APGsWsQV-avqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQV-AVQRVNPNGMVLGVDL 102 (232)
T ss_pred CCCCEEEEccCCCChHHHH-HHHhhCCCceEEEEee
Confidence 3789999999999999994 44333 26899997
No 316
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.11 E-value=0.94 Score=44.53 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee-ecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~ 234 (307)
....+|-+|-|.|.+...+..... .++++|++.|.|++.|+.++.-... .+.+.. ..++.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~------------ 356 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLD------------ 356 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchH------------
Confidence 346789999999988885433333 3899999999999999988742210 000110 11111
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEc----chhhhhC--ChhH--HHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWV----QWCIGHL--TDDD--FVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~----~~~l~~~--~~~d--l~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
|.+-=. ....++..||+++. .. .|-+ +.+. -..++..+...|.|.|.|++ ..++++..+
T Consensus 357 ---~~~~~~--k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i-nlv~r~~~~ 423 (482)
T KOG2352|consen 357 ---FLQRTA--KSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFII-NLVTRNSSF 423 (482)
T ss_pred ---HHHHHh--hccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEE-EEecCCcch
Confidence 111000 11123567898873 22 2222 2222 26688999999999999976 345555544
No 317
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=82.28 E-value=3.5 Score=32.40 Aligned_cols=92 Identities=18% Similarity=0.121 Sum_probs=56.4
Q ss_pred cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCC
Q 021836 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISAD 246 (307)
Q Consensus 167 GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~ 246 (307)
|.|..+..+++....+|+++|.++.-++.+++.-... .+.....++. .+ + ..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~---------~~~~~~~~~~-----~~---------i-----~~ 52 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADH---------VIDYSDDDFV-----EQ---------I-----RE 52 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESE---------EEETTTSSHH-----HH---------H-----HH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccc---------cccccccccc-----cc---------c-----cc
Confidence 4677888777666678999999999999987643110 0010000000 00 0 01
Q ss_pred CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 247 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 247 ~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
+. ....+|+|+-.-. -...++....+|+|+|.+++.-...
T Consensus 53 ~~-~~~~~d~vid~~g--------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 53 LT-GGRGVDVVIDCVG--------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HT-TTSSEEEEEESSS--------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cc-ccccceEEEEecC--------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 11 1247999985322 1456788889999999999976543
No 318
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.22 E-value=7 Score=36.09 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=29.2
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
++.+||-.|||. |..+..++..... .+++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 567888888765 5565555554433 68999999888886654
No 319
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=81.61 E-value=7 Score=37.32 Aligned_cols=47 Identities=19% Similarity=0.029 Sum_probs=37.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHHhC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~-----~v~~vD~s~~~l~~A~~~~~ 201 (307)
..++.+|||+.+.+|.=|..++..... .|++-|.++.-+......+.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh
Confidence 458899999999999999888876542 58999999887766665553
No 320
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.18 E-value=9.4 Score=35.77 Aligned_cols=96 Identities=23% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCCcEEEEeC---CHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~---s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+||=+|+|. |..+..+++....+|++++. ++.-++.+++. .. ..+.....+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga---------~~v~~~~~~~~---------- 231 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GA---------TYVNSSKTPVA---------- 231 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CC---------EEecCCccchh----------
Confidence 566888888753 44444444443337999986 66666766542 11 00100000000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.. ...+.+|+|+-.-. . ...+..+.+.|++||.+++....
T Consensus 232 -------------~~-~~~~~~d~vid~~g-----~---~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 232 -------------EV-KLVGEFDLIIEATG-----V---PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred -------------hh-hhcCCCCEEEECcC-----C---HHHHHHHHHHccCCcEEEEEecC
Confidence 00 01246898885422 1 23567788899999999876543
No 321
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=78.81 E-value=9.3 Score=35.91 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=32.5
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l 203 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL 203 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc
Confidence 46778888887 4677777666555557999999988877776443
No 322
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.99 E-value=20 Score=33.32 Aligned_cols=45 Identities=11% Similarity=-0.106 Sum_probs=29.7
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.+++.+||=.|+| .|..+..+++....+|++++.++.-++.+++.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 3467789888864 33344444444333799999998888887664
No 323
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=77.05 E-value=2.2 Score=39.61 Aligned_cols=46 Identities=24% Similarity=0.106 Sum_probs=39.7
Q ss_pred CceEEEEeccccHHHH-HHHHhcCCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 158 HLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~-~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+..|+|+=+|.|+++. .++..+...|.++|.+|..++..++.+..+
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N 241 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEAN 241 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhc
Confidence 4679999999999998 556667779999999999999999888654
No 324
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=75.40 E-value=16 Score=33.56 Aligned_cols=43 Identities=5% Similarity=-0.079 Sum_probs=31.1
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46678888874 56677776655554479999999888887754
No 325
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=74.80 E-value=13 Score=33.59 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=31.9
Q ss_pred cceeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.++++.....++. +..++-++.+-.-+. +.....|..++..|.|||+++|=|-
T Consensus 157 ~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 157 DNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred ccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 4677777754434432 233444443321111 1347789999999999999999654
No 326
>PRK11524 putative methyltransferase; Provisional
Probab=74.13 E-value=3.2 Score=38.13 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=28.6
Q ss_pred CCCceeeEEcchhhh------h----CCh----hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 250 ETGRYDVIWVQWCIG------H----LTD----DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 250 ~~~~fDlIi~~~~l~------~----~~~----~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++++||+|++.-... . ... .-+..++..+.++|||||.|++.
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 367899999852210 0 000 12467899999999999999874
No 327
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=73.09 E-value=3.8 Score=36.50 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=37.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.+.-|.+||.|.|.++..++.....++..|+.++.++.-.+-..
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~ 93 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLS 93 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHh
Confidence 45679999999999999999888889999999998877665443
No 328
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=73.08 E-value=7.8 Score=37.36 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=34.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.+++.+||-|.+| |..+..++...+.+|++||+|+..+...+-+.
T Consensus 33 i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 4477899999655 54555568888889999999999888776444
No 329
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=72.82 E-value=31 Score=30.69 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=29.5
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARES 199 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~~-v~~vD~s~~~l~~A~~~ 199 (307)
.++.+||=.|||. |..+..++.....+ |++++.++...+.+++.
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 4567788888754 44555444444445 99999998888866653
No 330
>PTZ00357 methyltransferase; Provisional
Probab=72.65 E-value=13 Score=38.51 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=58.2
Q ss_pred ceEEEEeccccHHHHHHHHhc----CC-cEEEEeCCHHHHHHHHHHh-CCCCCCC--cccccccceeecCcccccccccc
Q 021836 159 LVALDCGSGIGRITKNLLIRY----FN-EVDLLEPVSHFLDAARESL-APENHMA--PDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~----~~-~v~~vD~s~~~l~~A~~~~-~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
..|+=+|+|-|-+-...+... .. +|++||-++........+. ....+.+ ......++++..|+..
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~------- 774 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT------- 774 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc-------
Confidence 569999999997655544432 22 7999999966443333332 1111211 0012234555555540
Q ss_pred cCccceeeeccCC---cCCCCCCCCceeeEEcchhhhhCChhHH-HHHHHHHHHcCCC----CcE
Q 021836 231 VGSKKVKIAKKGI---SADFTPETGRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKP----GGF 287 (307)
Q Consensus 231 ~~~~~i~~~~~d~---~~~~~~~~~~fDlIi~~~~l~~~~~~dl-~~~l~~l~~~Lkp----GG~ 287 (307)
++... ....+..-+++|+|++- .|.-|.+.++ .+.|.-+.+.||+ +|+
T Consensus 775 --------W~~pe~~~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 775 --------IATAAENGSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred --------cccccccccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 00000 00001112479999863 3344444333 5677777777776 776
No 331
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.52 E-value=16 Score=34.33 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=28.4
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|||. |..+..+++.... +|+++|.++.-.+.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4667888888643 3344433343333 59999999998888864
No 332
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=71.05 E-value=7.9 Score=31.50 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=24.1
Q ss_pred EEecccc--HHHHHHHH-hc-C-CcEEEEeCCHHHHHHHHHH
Q 021836 163 DCGSGIG--RITKNLLI-RY-F-NEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 163 DiGcGtG--~~t~~ll~-~~-~-~~v~~vD~s~~~l~~A~~~ 199 (307)
|||++.| ..+..++. .. . .+|+++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66554442 22 2 3799999999999988887
No 333
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.63 E-value=35 Score=31.16 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=30.8
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||-.||| .|..+..++.....+|++++.++...+.+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 456788888886 6666655555544479999999988887744
No 334
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=68.80 E-value=11 Score=35.49 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=59.8
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|.=||.|. |..+..++.-....|+.+|.|..-+......+.. ++...-....
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~------------- 223 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPS------------- 223 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHH-------------
Confidence 456788888885 5555555555556899999998877777665521 1122111111
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.+...-.++|+++..-.+--.. ...-+.+++.+.||||+.++
T Consensus 224 ----------~iee~v~~aDlvIgaVLIpgak--aPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 224 ----------NIEEAVKKADLVIGAVLIPGAK--APKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ----------HHHHHhhhccEEEEEEEecCCC--CceehhHHHHHhcCCCcEEE
Confidence 1111135789998754433333 23556788899999998865
No 335
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=68.21 E-value=30 Score=32.33 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=30.9
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||=.|||. |..+..++.....+|+++|.++.-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34677899999854 455554444444479999999998888865
No 336
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=66.88 E-value=31 Score=31.94 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=32.3
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l 196 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL 196 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Confidence 346778888885 5666666655554447999998888888877644
No 337
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.86 E-value=9.8 Score=32.72 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=33.7
Q ss_pred CCCceeeEEcchhhhhCCh----------hHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 250 ETGRYDVIWVQWCIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 250 ~~~~fDlIi~~~~l~~~~~----------~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..++.|+|+++++++.+.. .+++.++.++.++|+|+..+|...
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 4678999999988776543 357888889999999998877753
No 338
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.07 E-value=43 Score=30.59 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~~-v~~vD~s~~~l~~A~~ 198 (307)
.++.+||-+|+| .|..+..+++...-+ +++++.++...+.+++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 356788888864 244555444444334 8899999988887754
No 339
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=65.95 E-value=9.3 Score=36.62 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
++.+|+=+|+| .|..+...+.....+|+.+|.++.-++.+...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 45678989887 344444444444447999999987766665443
No 340
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=65.66 E-value=30 Score=31.72 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=23.7
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+|+|+-.-. -...+..+.+.|+++|.+++.-.
T Consensus 199 ~g~Dvvid~~G--------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 199 RDYRAIYDASG--------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCCCEEEECCC--------CHHHHHHHHHhhhcCcEEEEEee
Confidence 46898885322 12356778889999999997653
No 341
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=65.48 E-value=29 Score=32.60 Aligned_cols=103 Identities=19% Similarity=0.151 Sum_probs=60.8
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=.|+ |.|.++..+++.....++++-.+++-.+.+++.-.. ..+++...++. .+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~-----~~--- 202 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFV-----EQ--- 202 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHH-----HH---
Confidence 345778888885 555777777666543677777777666666554321 12222222221 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
...+. ....+|+|+..-. ...+.+....|+++|.++..-...
T Consensus 203 -----------v~~~t-~g~gvDvv~D~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 203 -----------VRELT-GGKGVDVVLDTVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred -----------HHHHc-CCCCceEEEECCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 00111 1246999987433 345677888899999999876644
No 342
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=64.91 E-value=13 Score=35.00 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=28.2
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCCCCC
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSHSL 306 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~~~~ 306 (307)
...|+|++.-.+ +.....-+.+.....||||.+|+-+.. |.++|.+.|
T Consensus 197 ~~aDiVil~lP~---t~~t~~li~~~~l~~mk~gavlIN~aR----G~~vd~~aL 244 (330)
T PRK12480 197 KDADIISLHVPA---NKESYHLFDKAMFDHVKKGAILVNAAR----GAVINTPDL 244 (330)
T ss_pred hcCCEEEEeCCC---cHHHHHHHhHHHHhcCCCCcEEEEcCC----ccccCHHHH
Confidence 356888864432 111234455678888999987765433 555555443
No 343
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=64.60 E-value=69 Score=26.64 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCceEEEEeccccHHHH---HHHHhc---CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccc
Q 021836 157 QHLVALDCGSGIGRITK---NLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~---~ll~~~---~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
...++||+-+|.|.... .++... -.++..+.+.-...+...+.+...+. .+ ...+. ....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~---------~~-~t~~~----~~~~ 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPV---------RF-HTNAR----MRTH 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSE---------EE-ESTTS----S---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCc---------cc-Cceee----eccc
Confidence 45789999999996554 222221 22699999999999988888764321 11 11110 0012
Q ss_pred cCccceeeeccCCcCC---CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 231 VGSKKVKIAKKGISAD---FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~---~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
.++..|++....-... .+..-..||+||+-.+ |+.|+.-..+...+...-+.|+.-++.-.-.+.|..
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEc--H~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDEC--HFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTT--T--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEecc--ccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 2344455544311100 0112357999999887 888766555555555555555333333345566654
No 344
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=63.92 E-value=34 Score=32.29 Aligned_cols=43 Identities=19% Similarity=-0.008 Sum_probs=27.8
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+|. |..+..+++... .+|+++|.++.-++.+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3566777788642 334443333333 369999999998888865
No 345
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=63.57 E-value=31 Score=31.80 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=28.1
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||-.|+| .|..+..++.... ..+++++.++...+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 356788887664 3555555555544 368888888877776654
No 346
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.50 E-value=36 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=25.0
Q ss_pred ccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHh
Q 021836 166 SGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 166 cGtG~~t~~ll~~~---~~~v~~vD~s~~~l~~A~~~~ 200 (307)
||.|..+..++... ...|+.+|.++..++.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~ 41 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG 41 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc
Confidence 67777777665532 226999999999988887653
No 347
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=63.29 E-value=22 Score=35.70 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=31.3
Q ss_pred CCCceEEEEecccc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGtG-~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+++=+|||.= ..+..++......|+.+|.++.-++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35689999999875 34443444444479999999998888775
No 348
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=63.17 E-value=43 Score=30.50 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=30.5
Q ss_pred CCCceEEEEe--ccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiG--cGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.| .|.|..+..++.....+|++++.++.-.+.+++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3567787777 356666666555554479999998888888766
No 349
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=61.78 E-value=58 Score=31.26 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=32.6
Q ss_pred CCceEEEEeccccHHHHHHHHhc------CC--cEEEEeC----CHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEP----VSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~------~~--~v~~vD~----s~~~l~~A~~~~~ 201 (307)
+..+|+|+|.|.|.--..++... +. +||+++. +...++.+.+++.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 66899999999996544454432 12 7999999 7777777766653
No 350
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=60.79 E-value=36 Score=31.28 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=30.3
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||-.|+|. |..+..++.....+++++..+++..+.+++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 3567888888763 556665555554578899888888887754
No 351
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.74 E-value=33 Score=31.63 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=30.3
Q ss_pred ceEEEEec--cccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHh
Q 021836 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 159 ~~ILDiGc--GtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~ 200 (307)
.+||=.|+ |.|..+..+++.... +|++++.++.-.+.+++.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l 200 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL 200 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc
Confidence 67887775 566777766555544 6999999988887776644
No 352
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=60.61 E-value=24 Score=32.19 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=26.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhc------CCcEEEEeCCH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVS 190 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~------~~~v~~vD~s~ 190 (307)
.+...++|+|||.|.++.++.... ...++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 356789999999999999765544 12689999744
No 353
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.09 E-value=36 Score=29.80 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCceEEEEec-cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGc-GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||=+|. =||..+..+++. ..+|+.+|+.|.|-..... .++|.
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp~--------------~v~Fr------------------ 90 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLPN--------------NVKFR------------------ 90 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCCC--------------CccHh------------------
Confidence 4568898987 467777666666 4479999999977543321 12221
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 302 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d 302 (307)
. ...+..+.+|+|+---.+....+. ..+.+.|+ .+++|+-..+++..|
T Consensus 91 ----~-----~~~~~~G~~DlivDlTGlGG~~Pe--------~L~~fnp~--vfiVEdP~gn~~D~~ 138 (254)
T COG4017 91 ----N-----LLKFIRGEVDLIVDLTGLGGIEPE--------FLAKFNPK--VFIVEDPKGNVFDVD 138 (254)
T ss_pred ----h-----hcCCCCCceeEEEeccccCCCCHH--------HHhccCCc--eEEEECCCCCCCccc
Confidence 1 233357889999976666555532 33345665 445577666555544
No 354
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=59.92 E-value=72 Score=29.49 Aligned_cols=101 Identities=15% Similarity=0.056 Sum_probs=55.7
Q ss_pred ceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
++|+=+|||. |.+....|.+....|+.++-+...++..++.- ++.- ............
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~---Gl~i---~~~g~~~~~~~~--------------- 61 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAG---GLTL---VEQGQASLYAIP--------------- 61 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcC---CeEE---eeCCcceeeccC---------------
Confidence 5688888874 44333344554446999999876666554321 0000 000000000000
Q ss_pred eeccCCcCCCCCCCCceeeEEcch-hhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ....+.+.||+|+..- .. +....++.+...+.++..+++.-|
T Consensus 62 --~-----~~~~~~~~~D~viv~vK~~------~~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 62 --A-----ETADAAEPIHRLLLACKAY------DAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred --C-----CCcccccccCEEEEECCHH------hHHHHHHHHHhhCCCCCEEEEEeC
Confidence 0 0011235799888642 21 457788899999999998888777
No 355
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=59.56 E-value=40 Score=32.89 Aligned_cols=42 Identities=19% Similarity=-0.136 Sum_probs=28.6
Q ss_pred CCceEEEEeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcGtG~-~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
++.+|+=+|||+=. .....+.....+|+.+|.++.-.+.|+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 57899999998733 3332333333379999999887777654
No 356
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.44 E-value=61 Score=29.46 Aligned_cols=38 Identities=18% Similarity=0.034 Sum_probs=24.5
Q ss_pred eEEEEeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 160 ~ILDiGcGt--G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
+|.=||+|. |.++..+...+ .+|+++|.++..++.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH
Confidence 455677764 33444433333 369999999988877754
No 357
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=58.64 E-value=64 Score=26.58 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=53.3
Q ss_pred eEEEEeccccHHHHHH-HHhcCCcEEEEeCCHHHHHHHHHHhCCCC-CCCcccccccceeecCcccccccccccCcccee
Q 021836 160 VALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~l-l~~~~~~v~~vD~s~~~l~~A~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+|.=+|+|.+..+... ++....+|+....+++.++..++.-.... ..+......+.+ ..|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~--------------- 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLE--------------- 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHH---------------
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHH---------------
Confidence 3566888887766533 33344589999999988887776532111 000000001110 11111
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+- -...|+|+..-. ...++.+++++...++++-.+++.
T Consensus 65 -------~a----~~~ad~IiiavP-----s~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 65 -------EA----LEDADIIIIAVP-----SQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -------HH----HTT-SEEEE-S------GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred -------HH----hCcccEEEeccc-----HHHHHHHHHHHhhccCCCCEEEEe
Confidence 01 134688876422 224578899999999877666653
No 358
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=58.51 E-value=58 Score=29.97 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=25.9
Q ss_pred ceEEEEecccc--HHHHHHHHhcC-CcEEEEeCCHHHHHHHHH
Q 021836 159 LVALDCGSGIG--RITKNLLIRYF-NEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 159 ~~ILDiGcGtG--~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~ 198 (307)
.+|.=||+|.- .++..+...+. .+|+++|.++..++.+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~ 49 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE 49 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Confidence 56888888762 23333333333 379999999987776653
No 359
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=57.79 E-value=88 Score=26.45 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=50.4
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.|+.+|||-=.....+...... ++.-+|. |.+++.-++.+...+.. ......++..|+...+...+
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~---~~~~~~~v~~Dl~~~~~~~~--------- 147 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGAR---PPANYRYVPADLRDDSWIDA--------- 147 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHH---HHEESSEEES-TTSHHHHHH---------
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCccc---CCcceeEEeccccchhhHHH---------
Confidence 8999999998877765443322 4566665 44555555554322100 01123455555541111000
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHH
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRA 278 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l 278 (307)
+. ......+.--++++-.++.|++.++...+++.+
T Consensus 148 ----L~-~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 148 ----LP-KAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp ----HH-HCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred ----HH-HhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 00 011123455677788889999988888888765
No 360
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=56.33 E-value=92 Score=28.73 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=28.0
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~~-v~~vD~s~~~l~~A~~ 198 (307)
.++.+||-.|+|. |..+..+++....+ |+.++.++...+.+++
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 4566777777654 55555555544445 8999888887777754
No 361
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=55.52 E-value=74 Score=29.61 Aligned_cols=93 Identities=18% Similarity=0.071 Sum_probs=53.9
Q ss_pred CCCceEEEEecccc-HHHHHHHHh-c-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIG-RITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG-~~t~~ll~~-~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.++.+||=+|||.= ..+..+++. . ..+|+++|.++.-++.+++ +... + .. .
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~------------~-~~--~---------- 215 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET------------Y-LI--D---------- 215 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce------------e-eh--h----------
Confidence 35678998987542 233334443 2 3479999999887777764 2110 0 00 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++. ....+|+|+-.-. . ......+....+.|++||.+++.-.
T Consensus 216 -------------~~~-~~~g~d~viD~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 216 -------------DIP-EDLAVDHAFECVG--G---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -------------hhh-hccCCcEEEECCC--C---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 110 1124888874221 1 0123467888899999999988653
No 362
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=55.51 E-value=9.6 Score=35.31 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=35.7
Q ss_pred CccceeeeccCCcCCCCC---CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+..+|+|+..+....++- -.+.||+|+.+..+.|+-.++ +..+++|+|.|++ |+
T Consensus 198 ~~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~-------l~~~~a~~A~Lvv-Et 254 (289)
T PF14740_consen 198 ENVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE-------LFQALAPDAVLVV-ET 254 (289)
T ss_pred CCcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH-------HHHHhCCCCEEEE-Ec
Confidence 367788888866544432 257899999766544433222 6667899998877 44
No 363
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=55.06 E-value=34 Score=31.53 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=30.6
Q ss_pred ccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCH
Q 021836 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (307)
Q Consensus 153 ~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~ 190 (307)
.+..+++...|+|+-+|.+|..+..+.. .|++||-.+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ 243 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP 243 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcce-EEEEeccch
Confidence 3456889999999999999998777766 499999644
No 364
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=54.36 E-value=52 Score=30.28 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=27.0
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~~-v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=+|+|. |..+..+++....+ |++++.++.-.+.+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3567788787632 23333333333335 9999999988888754
No 365
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.26 E-value=65 Score=29.88 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=27.3
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+| .|..+..++.... ..++++|.++...+.+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 356778877764 3344443333333 358999999888877765
No 366
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=53.45 E-value=64 Score=29.68 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=28.4
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~~-v~~vD~s~~~l~~A~~ 198 (307)
.++.+||-.|+|. |..+..++.....+ +++++.++...+.+++
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~ 202 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 3567888887654 55555544444434 9999988887777643
No 367
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=51.23 E-value=56 Score=30.32 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCceEEEEeccccHHHHHH-HHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~l-l~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+..|+-+| -.-..++++ |...+.+|..+|+++..++..++-+.+.++.| +..+..|+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~------ie~~~~Dlr------------- 211 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN------IEAFVFDLR------------- 211 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc------hhheeehhc-------------
Confidence 456799998 333333332 44566799999999999998888777665543 333444443
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC---cEEEEEe
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG---G~lii~e 292 (307)
+.++. -..+||+++.--. ..+. .++.|+.+=-..||.- |+|.++-
T Consensus 212 ---------~plpe~~~~kFDvfiTDPp-eTi~--alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 212 ---------NPLPEDLKRKFDVFITDPP-ETIK--ALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred ---------ccChHHHHhhCCeeecCch-hhHH--HHHHHHhccHHHhcCCCccceEeeee
Confidence 12221 1478999886432 1111 4566777766777765 7777753
No 368
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=50.66 E-value=1.2e+02 Score=27.48 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=26.1
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+|+|+..-- ..++..+++.+...+.++..+++.-|
T Consensus 65 ~~~d~vila~k-----~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 65 GPQDLVILAVK-----AYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred CCCCEEEEecc-----cccHHHHHHHHhhhcCCCCEEEEecC
Confidence 56898886432 12467788888888888877777655
No 369
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=50.48 E-value=59 Score=29.29 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=20.4
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.+|+|+.+-.+. ....+++++...+++|+++.
T Consensus 45 ~~DlvvlavP~~-----~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 45 DADLVVLAVPVS-----AIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp CCSEEEE-S-HH-----HHHHHHHHHHCGS-TTSEEE
T ss_pred CCCEEEEcCCHH-----HHHHHHHHhhhhcCCCcEEE
Confidence 469988754432 46777888888888876654
No 370
>PRK08507 prephenate dehydrogenase; Validated
Probab=49.93 E-value=78 Score=28.59 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=23.4
Q ss_pred eEEEEeccc--cHHHHHHHHhcCC-cEEEEeCCHHHHHHHH
Q 021836 160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAAR 197 (307)
Q Consensus 160 ~ILDiGcGt--G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~ 197 (307)
+|.=||+|. |.++..+...+.. +|+++|.++..++.+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 455677665 2344433333332 6999999998777664
No 371
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=49.58 E-value=94 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=26.9
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~ 199 (307)
++.+||=+|+|+ |..+..+++... .+|+++|.++.-++.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 566888887642 333333333333 3489999998888877653
No 372
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.18 E-value=82 Score=29.27 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=65.2
Q ss_pred CceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
-..|+-+|||--.=+..+ .... -+|.=+|. |+.++.=++.+.+.+... ..++
T Consensus 93 ~~qvViLgaGLDTRayRl-~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~-------------------------~~~~ 145 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL-DWPKGTRVFEVDL-PEVIEFKKKLLAERGATP-------------------------PAHR 145 (297)
T ss_pred ccEEEEeccccccceeec-CCCCCCeEEECCC-cHHHHHHHHHhhhcCCCC-------------------------CceE
Confidence 367999999865433321 1111 15666665 566666556665433211 1122
Q ss_pred eeeccCCc-CCCC-------CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGIS-ADFT-------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~-~~~~-------~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++.+|+. .+|. +..+.-=++++-.++.|++.+...++|..+.....||-.+++..
T Consensus 146 ~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 146 RLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred EEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 33333333 2332 12334457788889999999999999999999998888777654
No 373
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=47.93 E-value=99 Score=28.09 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=25.6
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+|+|+..-- ...+..+++.+...+.++..++..-|
T Consensus 67 ~~~d~vilavk-----~~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 67 GPFDLVILAVK-----AYQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred CCCCEEEEEec-----ccCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 56898876432 12467778888888888877776655
No 374
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=45.14 E-value=69 Score=25.72 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 251 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...||+|+..-= ..+..+.++.+...+.|+..+++.-|
T Consensus 65 ~~~~D~viv~vK-----a~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 65 AGPYDLVIVAVK-----AYQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp HSTESEEEE-SS-----GGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred cCCCcEEEEEec-----ccchHHHHHHHhhccCCCcEEEEEeC
Confidence 468999986421 11567889999999999998888877
No 375
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=44.10 E-value=92 Score=28.14 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=46.4
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+..++...+... ..++..|||-=+|+|.... ..........++|+++..++.+.+++..
T Consensus 207 ~P~~l~~r~i~~~-----s~~~diVlDpf~GsGtt~~-aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 207 KPLALIERLIRDY-----SFPGDIVLDPFAGSGTTGI-AAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred ChHHHHHHHHHhc-----CCCCCEEeecCCCCChHHH-HHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 4455566655432 3477899999999999988 3556666899999999999999988854
No 376
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=44.03 E-value=53 Score=30.72 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=34.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.+.+|.-||+|...... ++++.+.+|++||+++..+...+-++.
T Consensus 63 ~ghrivtigSGGcn~L~-ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSGGCNMLA-YLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCCcchHHH-HhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 56789999998765555 578888899999999998877665443
No 377
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=43.89 E-value=1.4e+02 Score=28.73 Aligned_cols=41 Identities=5% Similarity=-0.057 Sum_probs=30.6
Q ss_pred CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 251 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++.+|+|+..+.= +...+...+..+...|.||+.+++.++.
T Consensus 104 ~~~~d~vl~~~PK---~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 104 PQQPGVVLIKVPK---TLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred cCCCCEEEEEeCC---CHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 4569999876531 1235677789999999999999887764
No 378
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=42.57 E-value=1.1e+02 Score=29.91 Aligned_cols=40 Identities=13% Similarity=-0.214 Sum_probs=25.2
Q ss_pred CCceEEEEeccccHHHH-HHHHhcCCcEEEEeCCHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAA 196 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~-~ll~~~~~~v~~vD~s~~~l~~A 196 (307)
.+.+|+=+|+|.=.... ..+.....+|+++|.++.-...+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA 234 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH
Confidence 56789999998743333 22333334799999888544333
No 379
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=42.44 E-value=78 Score=29.76 Aligned_cols=32 Identities=19% Similarity=0.008 Sum_probs=22.0
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+|+|+-.-. . ...+..+.+.|++||.+++..
T Consensus 247 ~~D~vid~~g----~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 247 TMDYIIDTVS----A----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCCEEEECCC----C----HHHHHHHHHHhcCCcEEEEeC
Confidence 4788884321 1 234667788999999998764
No 380
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=42.44 E-value=34 Score=29.34 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEeccCCCCc
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKENIARSGT 299 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e~~~~~~~ 299 (307)
-+.+.++.+...|++ |.+++.+...+.|+
T Consensus 98 ~v~~a~~~i~~~l~~-~~lvV~~STvppGt 126 (185)
T PF03721_consen 98 YVESAIESIAPVLRP-GDLVVIESTVPPGT 126 (185)
T ss_dssp HHHHHHHHHHHHHCS-CEEEEESSSSSTTH
T ss_pred HHHHHHHHHHHHHhh-cceEEEccEEEEee
Confidence 367889999999999 55555566666664
No 381
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=42.31 E-value=89 Score=30.75 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCCceEEEEec-cccHHHH------HHHHhcCC-cEEEEe-CCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccc
Q 021836 156 NQHLVALDCGS-GIGRITK------NLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 156 ~~~~~ILDiGc-GtG~~t~------~ll~~~~~-~v~~vD-~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
+++..|+=+|= |+|-.|. ++-..... -+++.| .-|.++++.+......+ +.||..+-+ .++
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~---------v~~f~~~~~-~~P 167 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG---------VPFFGSGTE-KDP 167 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC---------CceecCCCC-CCH
Confidence 45678888885 7774433 21111121 367777 45778888887765433 334433211 000
Q ss_pred cccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 227 KNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 227 ~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
++..+..+. .. ..+.||+|++--+=.|--++++-+=+++++..++|.=.|+++|-...
T Consensus 168 ---------v~Iak~al~-~a--k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 168 ---------VEIAKAALE-KA--KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred ---------HHHHHHHHH-HH--HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 111111110 11 24579999976554444455777788999999999999999987554
No 382
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=42.26 E-value=21 Score=33.37 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=27.1
Q ss_pred CceeeEEcchhhhhCChhHHHHHH-HHHHHcCCCCcEEEEEeccCCCCcccCCCCC
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKENIARSGTFLLSHSL 306 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l-~~l~~~LkpGG~lii~e~~~~~~~~~d~~~~ 306 (307)
...|+|++.-.+ ++ +...++ +.....||||.+|+-+-. |.++|.++|
T Consensus 189 ~~aDvvv~~lPl---t~-~T~~li~~~~l~~mk~ga~lIN~aR----G~vVde~aL 236 (312)
T PRK15469 189 SQTRVLINLLPN---TP-ETVGIINQQLLEQLPDGAYLLNLAR----GVHVVEDDL 236 (312)
T ss_pred hcCCEEEECCCC---CH-HHHHHhHHHHHhcCCCCcEEEECCC----ccccCHHHH
Confidence 346888875432 11 233343 457788999987765432 555565544
No 383
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=41.96 E-value=1.1e+02 Score=27.98 Aligned_cols=38 Identities=18% Similarity=0.029 Sum_probs=23.3
Q ss_pred eEEEEeccccH--HHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 160 VALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 160 ~ILDiGcGtG~--~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
+|-=||+|.-. ++..+...+. +|++.|.++..++.+.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~ 41 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKE 41 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 35567776532 3333333333 69999999987776654
No 384
>PLN02740 Alcohol dehydrogenase-like
Probab=41.25 E-value=1.3e+02 Score=28.33 Aligned_cols=44 Identities=9% Similarity=-0.065 Sum_probs=28.4
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||=+|||. |..+..+++.... +|+++|.++.-++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34677888888642 2233333333333 69999999998888865
No 385
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=40.70 E-value=1.5e+02 Score=26.26 Aligned_cols=43 Identities=21% Similarity=0.119 Sum_probs=29.4
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+|+-.|| +.|..+..++......|+.++.++...+.+++
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 182 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA 182 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 35678998887 35555555555444479999988887777754
No 386
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=40.30 E-value=14 Score=31.27 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=23.6
Q ss_pred CCceEEEEeccccHHHHHH---HHhcCCcEEEEeCCHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNL---LIRYFNEVDLLEPVSHFLD 194 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~l---l~~~~~~v~~vD~s~~~l~ 194 (307)
.+.+|.=+|+|. ++..+ +....-+|+++|.+.....
T Consensus 35 ~g~tvgIiG~G~--IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 35 RGKTVGIIGYGR--IGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp TTSEEEEESTSH--HHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred CCCEEEEEEEcC--CcCeEeeeeecCCceeEEecccCChhh
Confidence 457888887754 44433 3333348999999987665
No 387
>PRK13243 glyoxylate reductase; Reviewed
Probab=40.04 E-value=28 Score=32.79 Aligned_cols=35 Identities=9% Similarity=-0.090 Sum_probs=21.7
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSH 191 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~ 191 (307)
.+.+|.=+|.|. |......+....-+|.++|.++.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 184 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRK 184 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 457888898866 43222233333337999998754
No 388
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=39.83 E-value=18 Score=35.36 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=39.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN 204 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~ 204 (307)
++..|-|+-||.|-++......+. +|++-|.++.+++..+.+++-..
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNk 295 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNK 295 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccc
Confidence 678899999999999987665564 69999999999999998886443
No 389
>PRK07680 late competence protein ComER; Validated
Probab=38.99 E-value=1.4e+02 Score=26.98 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=21.3
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
..|+|+..- .+.++.++++.+...++++..++-
T Consensus 62 ~aDiVilav-----~p~~~~~vl~~l~~~l~~~~~iis 94 (273)
T PRK07680 62 QSDLIFICV-----KPLDIYPLLQKLAPHLTDEHCLVS 94 (273)
T ss_pred hCCEEEEec-----CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 468777543 233567777888777877765543
No 390
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=38.73 E-value=2.4e+02 Score=23.74 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred CCceEEEEeccccHHHHHHHH-h-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLI-R-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~-~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
...+|+.|||=+-..... . . ...++...|++..+-....+ .|...|.....
T Consensus 25 ~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~RF~~~~~~----------------~F~fyD~~~p~--------- 77 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRRFEQFGGD----------------EFVFYDYNEPE--------- 77 (162)
T ss_pred CCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecchHHhcCCc----------------ceEECCCCChh---------
Confidence 457999999987655542 2 1 22379999998765442211 12223322000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+...+ .++||+|++--.+ +..+-+..+...+..++|+++.+++.
T Consensus 78 -------~~~~~l---~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 78 -------ELPEEL---KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred -------hhhhhc---CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 000012 4789999987654 55545566777777888998888874
No 391
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=38.25 E-value=1.3e+02 Score=28.37 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=29.4
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+ +.|..+..+++....++++++.++.-.+.+++
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 45678888886 44555554444444467888999988888865
No 392
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=38.08 E-value=1.4e+02 Score=27.50 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=26.2
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..||+|+..--- .+..++++.+...++|++.++..-|
T Consensus 71 ~~~D~vilavK~-----~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 71 PPCDWVLVGLKT-----TANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred CCCCEEEEEecC-----CChHhHHHHHhhhcCCCCEEEEecC
Confidence 578998864221 1346677888888999998887766
No 393
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=37.74 E-value=3.2e+02 Score=24.91 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=25.2
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...|+|+..-. ......++..+...++++.+++..-|
T Consensus 70 ~~~D~vi~~v~-----~~~~~~v~~~l~~~~~~~~~vi~~~n 106 (325)
T PRK00094 70 ADADLILVAVP-----SQALREVLKQLKPLLPPDAPIVWATK 106 (325)
T ss_pred hCCCEEEEeCC-----HHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 35788886533 22567778888888888877765554
No 394
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=37.58 E-value=22 Score=33.87 Aligned_cols=40 Identities=13% Similarity=-0.066 Sum_probs=31.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA 195 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~ 195 (307)
.+++.-|.|-=.|||.+... .+....-|.|.||+-.|+..
T Consensus 206 v~pGdivyDPFVGTGslLvs-aa~FGa~viGtDIDyr~vra 245 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVS-AAHFGAYVIGTDIDYRTVRA 245 (421)
T ss_pred cCCCCEEecCccccCceeee-hhhhcceeeccccchheeec
Confidence 45788999999999998774 45555589999999888773
No 395
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=37.55 E-value=19 Score=30.83 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEEE
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+..++.++.++|||||.+++.
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCeeEEEE
Confidence 4678899999999999998874
No 396
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=37.19 E-value=23 Score=33.34 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=27.7
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCCCCC
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSHSL 306 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~~~~ 306 (307)
.+.|+|++.-.+. ++...-+=++..+.||||++|+=+.. |.++|...|
T Consensus 199 ~~sDii~l~~Plt---~~T~hLin~~~l~~mk~ga~lVNtaR----G~~VDe~AL 246 (324)
T COG1052 199 AESDIISLHCPLT---PETRHLINAEELAKMKPGAILVNTAR----GGLVDEQAL 246 (324)
T ss_pred HhCCEEEEeCCCC---hHHhhhcCHHHHHhCCCCeEEEECCC----ccccCHHHH
Confidence 4568888654321 11222222456678899998875443 666665544
No 397
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=37.00 E-value=2e+02 Score=26.47 Aligned_cols=42 Identities=19% Similarity=0.081 Sum_probs=24.8
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
++.+||-.|+|. |..+..++..... .|++++.++.-.+.+++
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 206 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK 206 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 456666666543 4455544444443 58888777766666554
No 398
>PRK08655 prephenate dehydrogenase; Provisional
Probab=36.77 E-value=1.7e+02 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.031 Sum_probs=18.3
Q ss_pred eEEEEe-cc-ccH-HHHHHHHhcCCcEEEEeCCHHHH
Q 021836 160 VALDCG-SG-IGR-ITKNLLIRYFNEVDLLEPVSHFL 193 (307)
Q Consensus 160 ~ILDiG-cG-tG~-~t~~ll~~~~~~v~~vD~s~~~l 193 (307)
+|.=+| +| .|. ++.. +.....+|+++|.++...
T Consensus 2 kI~IIGG~G~mG~slA~~-L~~~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 2 KISIIGGTGGLGKWFARF-LKEKGFEVIVTGRDPKKG 37 (437)
T ss_pred EEEEEecCCHHHHHHHHH-HHHCCCEEEEEECChHHH
Confidence 466676 34 333 2332 333223699999887664
No 399
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=36.61 E-value=1.6e+02 Score=27.21 Aligned_cols=43 Identities=28% Similarity=0.194 Sum_probs=26.4
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+| .|..+..++..... .|++++.++.-.+.+++
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~ 215 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE 215 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 355677777653 23333333344333 68999998888887754
No 400
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.05 E-value=2e+02 Score=28.03 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=26.4
Q ss_pred eEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 160 VALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 160 ~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
+|--+|+|. |..+...++....+|+++|+++.=++..++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g 42 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKG 42 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCC
Confidence 344566554 3333334555556899999999988887654
No 401
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=35.98 E-value=3.1e+02 Score=24.71 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=27.2
Q ss_pred CCCceEEEEeccccHHHHH---HHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKN---LLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~---ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+ |.++.. +++....++++++.++...+.+++
T Consensus 154 ~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 154 TPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35677877764 445443 233333369999999988888876
No 402
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=35.87 E-value=69 Score=31.90 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=23.0
Q ss_pred CCceEEEEeccccHHHHHH---HHhcCCcEEEEeCCHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNL---LIRYFNEVDLLEPVSHFLD 194 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~l---l~~~~~~v~~vD~s~~~l~ 194 (307)
.+.+|+=+|+|. ++..+ +.....+|+.+|.++.-..
T Consensus 253 aGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~ 291 (476)
T PTZ00075 253 AGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICAL 291 (476)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence 567899999886 33332 2222337999988776543
No 403
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=35.86 E-value=1.7e+02 Score=26.81 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=29.4
Q ss_pred CCCceEEEEecc--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 021836 156 NQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 156 ~~~~~ILDiGcG--tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~ 197 (307)
.++.+||=.|+| .|..+..++.....+++.+..++.-.+.++
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 207 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK 207 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 356778877765 566666666655557999998887777664
No 404
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.70 E-value=3.4e+02 Score=24.99 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=25.5
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHH-cCCCCcEEEEEec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLKEN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~-~LkpGG~lii~e~ 293 (307)
+.+|+|+..- ...++..+++.+.. .++++..+++.-|
T Consensus 70 ~~~Dliiiav-----ks~~~~~~l~~l~~~~l~~~~~vv~~~n 107 (326)
T PRK14620 70 DNATCIILAV-----PTQQLRTICQQLQDCHLKKNTPILICSK 107 (326)
T ss_pred CCCCEEEEEe-----CHHHHHHHHHHHHHhcCCCCCEEEEEEc
Confidence 4678887642 23367788888887 8888877666555
No 405
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=35.52 E-value=12 Score=30.09 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=30.9
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHH--HHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl--~~~l~~l~~~LkpGG~lii 290 (307)
+++.-+|..+.+..-...||+|+.-. +.--.++++ .++++.+++.++|||.+.-
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 44555554332222247899999642 111112232 7899999999999998875
No 406
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=35.24 E-value=1.4e+02 Score=27.81 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=25.2
Q ss_pred CCceEEEEecc-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~~~~-v~~vD~s~~~l~~A~~ 198 (307)
++.+||=.|+| .|..+..++...... +++++.++...+.+++
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~ 230 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE 230 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 45667655543 334444444443334 8999988888777754
No 407
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=34.79 E-value=1.9e+02 Score=26.98 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=24.9
Q ss_pred CCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
++.++|=.|+| .|..+..+++....+++.++.++...+.+.+.+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~ 224 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHL 224 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhc
Confidence 55677766653 333444444433336888888776665554443
No 408
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=34.34 E-value=3.1e+02 Score=26.40 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=25.2
Q ss_pred eEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 160 ~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
+|-=+|.| -|.-...+++.+ .+|+++|+++.-++..++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G-~~VigvD~d~~kv~~l~~g~ 42 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQN-HEVVALDILPSRVAMLNDRI 42 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CcEEEEECCHHHHHHHHcCC
Confidence 34456666 333222334444 36999999999998887643
No 409
>PTZ00117 malate dehydrogenase; Provisional
Probab=33.86 E-value=1.6e+02 Score=27.51 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLD 194 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~ 194 (307)
+..+|.=+|+|. |.....++.... .++..+|++++..+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ 43 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch
Confidence 346899999988 765554444332 47999999876543
No 410
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=33.57 E-value=1.5e+02 Score=29.05 Aligned_cols=40 Identities=18% Similarity=-0.132 Sum_probs=24.5
Q ss_pred CCceEEEEeccccHHHH-HHHHhcCCcEEEEeCCHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAA 196 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~-~ll~~~~~~v~~vD~s~~~l~~A 196 (307)
.+.+|+=+|+|.=.... ..+.....+|+.+|.++.-...+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A 251 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA 251 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH
Confidence 56789999987533222 12223333799999988654433
No 411
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=32.99 E-value=38 Score=34.77 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=25.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVS 190 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~ 190 (307)
+...|||+||.+|.+.. ++....+ -|+|+|+-|
T Consensus 44 ~a~~vlDLcaAPG~W~Q-VA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQ-VASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHH-HHHHhCCCCceEEEeeeee
Confidence 56789999999999988 5555332 689999754
No 412
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=32.71 E-value=1.9e+02 Score=25.46 Aligned_cols=42 Identities=14% Similarity=-0.012 Sum_probs=28.8
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
++.+||=.|+ +.|..+..++.....++++++.++...+.+++
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 179 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA 179 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 5567887874 45566665555555578999888888777744
No 413
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.62 E-value=1.1e+02 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=32.4
Q ss_pred CCceEEEEec-cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGc-GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
++.+|-=+|. |-|.++..+.....-+|+++|-+..--+.+-+.+..
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGA 227 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGA 227 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCc
Confidence 5555444443 488888877777767999999998777777666643
No 414
>PRK13699 putative methylase; Provisional
Probab=32.33 E-value=42 Score=29.78 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCCcEEEE
Q 021836 271 FVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 271 l~~~l~~l~~~LkpGG~lii 290 (307)
+..++.+++++|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 46789999999999999886
No 415
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=32.17 E-value=47 Score=31.07 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+..+|..+..+|+|||.+++..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VIS 240 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIIS 240 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe
Confidence 57889999999999999999864
No 416
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=32.14 E-value=1.8e+02 Score=27.49 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred CceeeEEcchhhhhCChhHHHHHH-HHHHHcCCCCcEEEEE
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLK 291 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l-~~l~~~LkpGG~lii~ 291 (307)
...|+|++. +++.....++ +.+...|+||.+|++.
T Consensus 72 ~~ADVVvLa-----VPd~~~~~V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 72 KWADVIMIL-----LPDEVQAEVYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred hcCCEEEEc-----CCHHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 346888873 3444556677 7788899999888664
No 417
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.92 E-value=3.2e+02 Score=25.28 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=21.5
Q ss_pred eEEEEeccc-cHHHHHHHHh-c-CCcEEEEeCCHHHHH
Q 021836 160 VALDCGSGI-GRITKNLLIR-Y-FNEVDLLEPVSHFLD 194 (307)
Q Consensus 160 ~ILDiGcGt-G~~t~~ll~~-~-~~~v~~vD~s~~~l~ 194 (307)
+|.=||+|. |......+.. . ..++..+|.++...+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~ 39 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAE 39 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhh
Confidence 577788876 3333222333 3 257999999886554
No 418
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=31.50 E-value=57 Score=30.51 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=49.7
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
-.+|.+..+++.+-+. .+.+..|.++...+-..+++..+..++.++.+-+.+|..+|+...
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 4457777777765443 246889999998888889988999999999999999999999644
No 419
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.36 E-value=2.8e+02 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=23.6
Q ss_pred CCceEEEEeccccH-HHHHHHHhcCCcEEEEeCCHH
Q 021836 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSH 191 (307)
Q Consensus 157 ~~~~ILDiGcGtG~-~t~~ll~~~~~~v~~vD~s~~ 191 (307)
...+|+|+|-|-=. .+..+..+++. |+++|+++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~ 47 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK 47 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc
Confidence 34599999987653 44444444565 999999876
No 420
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=31.33 E-value=2e+02 Score=26.43 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=25.3
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
++.+||=.|+|. |..+..++..... +|+.++.++.-.+.+++
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 206 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 455666666543 4454444444333 58888888877776654
No 421
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=31.32 E-value=1.3e+02 Score=29.17 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCceEEEEeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~---~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
...+|+=+|+ |.++..++.. ....|+.+|.+++.++..++..
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~ 274 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL 274 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC
Confidence 3467887777 5555544433 2336999999999888877653
No 422
>PRK07574 formate dehydrogenase; Provisional
Probab=31.19 E-value=62 Score=31.29 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=26.2
Q ss_pred CceeeEEcchhhhhCChhHHHHHH-HHHHHcCCCCcEEEEEeccCCCCcccCCCC
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKENIARSGTFLLSHS 305 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l-~~l~~~LkpGG~lii~e~~~~~~~~~d~~~ 305 (307)
...|+|++.-.+. ++...++ ++....||+|.+|+-+.. |.++|.+.
T Consensus 247 ~~aDvV~l~lPlt----~~T~~li~~~~l~~mk~ga~lIN~aR----G~iVDe~A 293 (385)
T PRK07574 247 SVCDVVTIHCPLH----PETEHLFDADVLSRMKRGSYLVNTAR----GKIVDRDA 293 (385)
T ss_pred hcCCEEEEcCCCC----HHHHHHhCHHHHhcCCCCcEEEECCC----CchhhHHH
Confidence 3569988754431 1233444 457778899987765432 44445443
No 423
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=30.96 E-value=34 Score=33.10 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=61.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhC---CC-CCCCcccccccceeecCcccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLA---PE-NHMAPDMHKATNFFCVPLQGQREKN 228 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~---~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (307)
.++.....|+|+|.|..... ++.+.. .-.|+++....-+.+..+.. .. .+-+ .....+.....++-
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~-~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG-k~~~~~~~i~gsf~------ 261 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCF-VAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG-KKPNKIETIHGSFL------ 261 (419)
T ss_pred cCCCCcccCCCcccchhhHH-HHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC-CCcCceeecccccC------
Confidence 44778899999999998884 444433 45677765554444432211 00 0000 00111111111111
Q ss_pred cccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 229 KKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 229 ~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
..+....+ ....++|+++++. ++ +++.-=+.++..-+++|-.++-.+.+..
T Consensus 262 -----------~~~~v~eI---~~eatvi~vNN~~--Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 -----------DPKRVTEI---QTEATVIFVNNVA--FD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred -----------CHHHHHHH---hhcceEEEEeccc--CC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 00000011 3467999998873 33 3444445688888999988887665444
No 424
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=30.91 E-value=2.2e+02 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=22.7
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+|+|+-... . ...+..+.+.|+++|.++...
T Consensus 229 ~~~d~vld~~g----~----~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 229 EGVDVFLEMSG----A----PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCCEEEECCC----C----HHHHHHHHHhhcCCCEEEEEc
Confidence 46899986411 1 234677788899999988764
No 425
>PLN02688 pyrroline-5-carboxylate reductase
Probab=30.68 E-value=1.7e+02 Score=25.98 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=21.2
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
..|+|+..- .+....+++..+...+++|..++
T Consensus 61 ~aDvVil~v-----~~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 61 SSDVIILAV-----KPQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred cCCEEEEEE-----CcHHHHHHHHHHHhhcCCCCEEE
Confidence 468887643 23356777777777777776554
No 426
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=30.03 E-value=2.9e+02 Score=27.48 Aligned_cols=41 Identities=15% Similarity=-0.038 Sum_probs=27.3
Q ss_pred ceEEEEeccccHHHHHH-HHhc-C-CcEEEEeCCHHHHHHHHHH
Q 021836 159 LVALDCGSGIGRITKNL-LIRY-F-NEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~l-l~~~-~-~~v~~vD~s~~~l~~A~~~ 199 (307)
++|.=+|+|...+.... ++.. . .+|+++|+++.-++..++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g 45 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD 45 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC
Confidence 35777888776655433 2222 1 2699999999998887644
No 427
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=29.96 E-value=2.2e+02 Score=25.56 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=27.7
Q ss_pred CCceEEEEecc--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcG--tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
++.++|=.|++ .|..+..++.....+++.++.++.-.+.++.
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 209 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE 209 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 55678877764 5555555555544578999988877666643
No 428
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=29.95 E-value=40 Score=27.94 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHH--HHHcCCCCcEEEEEe
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLKE 292 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~--l~~~LkpGG~lii~e 292 (307)
..|+|++.-. +++..++++.. +...|++|.+++-..
T Consensus 57 ~~dvvi~~v~----~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 57 QADVVILCVP----DDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp HBSEEEE-SS----SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred cccceEeecc----cchhhhhhhhhhHHhhccccceEEEecC
Confidence 4588876422 12346677777 777888877666543
No 429
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=29.79 E-value=91 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=25.0
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE-ec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-EN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~-e~ 293 (307)
..||.|+..+. =.++...-.|..+...|++||.|+++ ||
T Consensus 68 ~~~D~vvly~P---KaK~e~~~lL~~l~~~L~~g~~i~vVGEn 107 (155)
T PF08468_consen 68 QDFDTVVLYWP---KAKAEAQYLLANLLSHLPPGTEIFVVGEN 107 (155)
T ss_dssp TT-SEEEEE-----SSHHHHHHHHHHHHTTS-TT-EEEEEEEG
T ss_pred cCCCEEEEEcc---CcHHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 56999998654 12345566799999999999987764 55
No 430
>PLN03139 formate dehydrogenase; Provisional
Probab=29.60 E-value=65 Score=31.14 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=26.1
Q ss_pred ceeeEEcchhhhhCChhHHHHHH-HHHHHcCCCCcEEEEEeccCCCCcccCCCC
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKENIARSGTFLLSHS 305 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l-~~l~~~LkpGG~lii~e~~~~~~~~~d~~~ 305 (307)
..|+|++.-.+ +. +...++ +.....||||.+|+-+-. |.++|.+.
T Consensus 255 ~sDvV~l~lPl---t~-~T~~li~~~~l~~mk~ga~lIN~aR----G~iVDe~A 300 (386)
T PLN03139 255 KCDVVVINTPL---TE-KTRGMFNKERIAKMKKGVLIVNNAR----GAIMDTQA 300 (386)
T ss_pred hCCEEEEeCCC---CH-HHHHHhCHHHHhhCCCCeEEEECCC----CchhhHHH
Confidence 46998875432 11 223333 467788899987765432 55555443
No 431
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=29.54 E-value=58 Score=30.46 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.++.+|..+..+|+|||.|+|..
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIs 244 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVIS 244 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEE
Confidence 67899999999999999999865
No 432
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=29.47 E-value=55 Score=30.42 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+..+|..+..+|+|||.+++..
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~vis 236 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVIS 236 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe
Confidence 57889999999999999998864
No 433
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=29.36 E-value=1.6e+02 Score=24.69 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEP 188 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~ 188 (307)
...-|||+|=|+|+.--++-..... +|+.+|-
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 3467999999999988876655554 7888885
No 434
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=29.29 E-value=2.5e+02 Score=26.13 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=27.2
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAAR 197 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~ 197 (307)
.++.+||-.|+| .|..+..++..... .|++++.++...+.++
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~ 224 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR 224 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 356678777764 34555544544443 4999998888777764
No 435
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=29.19 E-value=20 Score=27.48 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=10.9
Q ss_pred EEEEeccccHHHHH
Q 021836 161 ALDCGSGIGRITKN 174 (307)
Q Consensus 161 ILDiGcGtG~~t~~ 174 (307)
=+|||||.|...-.
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 47999999976543
No 436
>PLN02494 adenosylhomocysteinase
Probab=28.98 E-value=1.2e+02 Score=30.12 Aligned_cols=40 Identities=20% Similarity=-0.058 Sum_probs=23.8
Q ss_pred CCceEEEEeccccHHHHHH-HHhcCCcEEEEeCCHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAA 196 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~l-l~~~~~~v~~vD~s~~~l~~A 196 (307)
.+.+|+=+|+|.=...... +.....+|+++|.++.-...+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA 293 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA 293 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH
Confidence 4678999988753322222 222223799999987644333
No 437
>PRK06223 malate dehydrogenase; Reviewed
Probab=28.85 E-value=3.2e+02 Score=24.96 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=23.6
Q ss_pred ceEEEEeccc-cHHHHHHHHhc-CCcEEEEeCCHHHH
Q 021836 159 LVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFL 193 (307)
Q Consensus 159 ~~ILDiGcGt-G~~t~~ll~~~-~~~v~~vD~s~~~l 193 (307)
.+|.=+|+|. |......+... ..+|..+|++++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~ 39 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVP 39 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchh
Confidence 4688899988 65544444432 12799999987654
No 438
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=28.25 E-value=1.3e+02 Score=25.54 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=51.3
Q ss_pred EEEEeccccHHHHHH-HHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeee
Q 021836 161 ALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIA 239 (307)
Q Consensus 161 ILDiGcGtG~~t~~l-l~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~ 239 (307)
|.=+|+|+=..+... +....-+|+.+|.+++.++.+++++...- ..... ...+. ++ .......++++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l------~~~~~--~~~~~-~~--~~~~~~~~i~~~ 70 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLL------DRLVR--KGRLS-QE--EADAALARISFT 70 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHH------HHHHH--TTTTT-HH--HHHHHHHTEEEE
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHH------hhhhh--hccch-hh--hhhhhhhhcccc
Confidence 555777764333322 22233379999999999999887764200 00000 00000 00 000001122221
Q ss_pred ccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 240 KKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 240 ~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
. ++.. ....|+|+=+-. ..+. --+++++++.+.+.|+-+|.-
T Consensus 71 ~-----dl~~-~~~adlViEai~-E~l~--~K~~~~~~l~~~~~~~~ilas 112 (180)
T PF02737_consen 71 T-----DLEE-AVDADLVIEAIP-EDLE--LKQELFAELDEICPPDTILAS 112 (180)
T ss_dssp S-----SGGG-GCTESEEEE-S--SSHH--HHHHHHHHHHCCS-TTSEEEE
T ss_pred c-----CHHH-Hhhhheehhhcc-ccHH--HHHHHHHHHHHHhCCCceEEe
Confidence 1 2211 126788875432 1111 347899999999999877655
No 439
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=28.19 E-value=2.3e+02 Score=26.53 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=27.0
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+|. |..+..++.... ..+++++.++.-.+.+++
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3566777777643 444443333333 369999999888877754
No 440
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=27.82 E-value=4.5e+02 Score=24.27 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=24.8
Q ss_pred CCceEEEEecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
++.+||=.|+| .|..+..++..... +|++++.++.-.+.+++
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 220 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE 220 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 55677777653 22333333333333 79999988877776643
No 441
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.00 E-value=2.7e+02 Score=28.50 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=25.0
Q ss_pred ceEEEEeccccHHHHHHHH---hcCCcEEEEeCCHHHHHHHHH
Q 021836 159 LVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~---~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.+|+=+ |.|+++..+.. .....++.+|.+++.++.+++
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 355554 55555554433 233369999999999998865
No 442
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=26.96 E-value=62 Score=27.71 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=21.3
Q ss_pred CceeeEEcchh-hhhC-ChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 252 GRYDVIWVQWC-IGHL-TDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 252 ~~fDlIi~~~~-l~~~-~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++||+||..++ ...+ .-......++.+.+..+.||-|+++-
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmig 108 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIG 108 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEe
Confidence 68999998765 2222 00001445666676667788777754
No 443
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=26.89 E-value=2.5e+02 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=26.4
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+| .|..+..++.....+++.++.++.-++.+++
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK 205 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 355677777742 2333333333333379999998887877754
No 444
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=26.86 E-value=3.4e+02 Score=24.43 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=29.2
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
++.+||=.|+ +.|..+..++.....++++++.++.-.+.+++.+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~ 190 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL 190 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc
Confidence 4567777774 4555665555554447999998888777776533
No 445
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=26.75 E-value=3e+02 Score=26.70 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=24.0
Q ss_pred ceEEEEeccccHHHHH-HHHhcCCcEEEEeCCHHHHHHH
Q 021836 159 LVALDCGSGIGRITKN-LLIRYFNEVDLLEPVSHFLDAA 196 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~-ll~~~~~~v~~vD~s~~~l~~A 196 (307)
.+|.=||.|.-..+.. .+.....+|+++|.++.-++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 4577777775433332 1223334699999999988764
No 446
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.64 E-value=1.9e+02 Score=26.64 Aligned_cols=41 Identities=17% Similarity=-0.029 Sum_probs=25.8
Q ss_pred CCceEEEEeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 021836 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 157 ~~~~ILDiGcGtG~-~t~~ll~~~~~~v~~vD~s~~~l~~A~ 197 (307)
.+.+++=+|+|.-. .....+.....+|+.+|.++...+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46789999986522 222223333348999999987665554
No 447
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=26.55 E-value=1.6e+02 Score=26.40 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCCCcEEEEEec
Q 021836 271 FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 271 l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..++.+.+.+. .|+|++++..|
T Consensus 99 ~~~i~~~i~~~-~p~a~~i~~tN 120 (263)
T cd00650 99 VKEIGDNIEKY-SPDAWIIVVSN 120 (263)
T ss_pred HHHHHHHHHHH-CCCeEEEEecC
Confidence 45566666665 49999988876
No 448
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=26.47 E-value=5.3e+02 Score=23.98 Aligned_cols=43 Identities=12% Similarity=-0.052 Sum_probs=27.1
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=+|+| .|..+..+++.... +|++++.++.-.+.+++
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 456788877763 22333333333333 69999999988888854
No 449
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=26.43 E-value=3.1e+02 Score=24.60 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=28.3
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
++.+||=.|+ +.|..+..++.....+++.+..++...+.+++
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 183 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK 183 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 5567777764 56666666555554466778888888887754
No 450
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=26.16 E-value=2.3e+02 Score=25.47 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=26.7
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+ +.|..+..++.....+++.+..++...+.+++
T Consensus 138 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 182 (324)
T cd08292 138 KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA 182 (324)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh
Confidence 35667777765 35666665555554467777666666666654
No 451
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=25.54 E-value=1.8e+02 Score=21.93 Aligned_cols=41 Identities=20% Similarity=0.094 Sum_probs=29.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC------C-cEEEEeCCHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF------N-EVDLLEPVSHFLDA 195 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~------~-~v~~vD~s~~~l~~ 195 (307)
...+.+||=+|||..+....-+.... . +++..|.++..+.+
T Consensus 21 ~~~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlAR 68 (100)
T PF14737_consen 21 PDEDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLAR 68 (100)
T ss_pred CCCCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHH
Confidence 34678999999999987665444322 1 68999998877654
No 452
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=25.47 E-value=3.5e+02 Score=24.18 Aligned_cols=43 Identities=16% Similarity=-0.017 Sum_probs=29.0
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+ +.|..+..++.....++++++.++...+.+++
T Consensus 141 ~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~ 185 (324)
T cd08244 141 TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA 185 (324)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35567777774 55566665555555579999988888777743
No 453
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=25.43 E-value=3e+02 Score=25.60 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCCceEEEEeccc-cHHHHHHHHh--cCCcEEEEeCCHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIR--YFNEVDLLEPVSHFLD 194 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~--~~~~v~~vD~s~~~l~ 194 (307)
+.+.+|.=+|+|. |......+.. ...++..+|+++..++
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~ 45 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAE 45 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhH
Confidence 3567999999976 4433333322 2347999999776543
No 454
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=25.27 E-value=4.3e+02 Score=26.30 Aligned_cols=44 Identities=11% Similarity=-0.031 Sum_probs=33.1
Q ss_pred CCceEEEEeccccHHHHHHHHhc-C----CcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-F----NEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~----~~v~~vD~s~~~l~~A~~~~ 200 (307)
+...|.|.-||+|.+........ . ..++|-+....+...++.++
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 45789999999999876433221 1 25899999999999888764
No 455
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=25.13 E-value=2.1e+02 Score=28.00 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=25.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~ 197 (307)
++++|-=||. |+.+..+..... .+|+++|+++.-++..+
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 3466766654 545544333321 36999999999988876
No 456
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=25.04 E-value=2.7e+02 Score=25.58 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=26.4
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|||+ |..+..+++.... .|++++.++.-.+.+++
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 3567888887643 2233333333333 47899999988887754
No 457
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.92 E-value=1.8e+02 Score=26.45 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=24.6
Q ss_pred ceEEEEeccccH--HHHHHHHhcC---CcEEEEeCCHHHHHHHHHH
Q 021836 159 LVALDCGSGIGR--ITKNLLIRYF---NEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 159 ~~ILDiGcGtG~--~t~~ll~~~~---~~v~~vD~s~~~l~~A~~~ 199 (307)
.+|.=||||.=. ++..++.... .+|++.|.++.-++.+.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~ 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh
Confidence 357778887532 2222333332 2699999998777665543
No 458
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=24.88 E-value=25 Score=32.80 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=20.5
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVS 190 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~ 190 (307)
.+.+|.=+|.|. |.....++..+.-+|.++|.+.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~ 178 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG 178 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence 456788887764 4433333433333899999853
No 459
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=24.66 E-value=2.5e+02 Score=25.67 Aligned_cols=36 Identities=22% Similarity=0.087 Sum_probs=20.3
Q ss_pred EEEEeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 021836 161 ALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 161 ILDiGcGt--G~~t~~ll~~~~~~v~~vD~s~~~l~~A~ 197 (307)
|-=||+|. ..++..++.... +|++.|.++...+.+.
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~ 40 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAG 40 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH
Confidence 44456554 123333333333 6899999987766654
No 460
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=24.46 E-value=4.8e+02 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=23.3
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHH
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A 196 (307)
++.+||=.|+ +.|..+..++.....+++.++.++ ..+.+
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~ 184 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFL 184 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHH
Confidence 5567887775 345555544444444677777665 55555
No 461
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.36 E-value=4.4e+02 Score=22.35 Aligned_cols=41 Identities=7% Similarity=-0.108 Sum_probs=24.3
Q ss_pred CceEEEEeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHH
Q 021836 158 HLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~---~~~~v~~vD~s~~~l~~A~~~ 199 (307)
+.+||=.|++ |.++..+... ...+|++++.++.-.+...+.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKT 48 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4578888875 3333333322 222699999888766555433
No 462
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=24.20 E-value=1.2e+02 Score=28.78 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=29.2
Q ss_pred CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 251 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
...||+|+..+.= .+...+-.|..+.+.|+|||.++++.
T Consensus 74 ~~~~d~~~~~~pk---~k~~~~~~l~~~~~~l~~g~~i~~~G 112 (342)
T PRK09489 74 VADCDTLIYYWPK---NKQEAQFQLMNLLSLLPVGTDIFVVG 112 (342)
T ss_pred CCCCCEEEEECCC---CHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3579999875541 12356778999999999999988864
No 463
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.17 E-value=3.7e+02 Score=23.82 Aligned_cols=41 Identities=15% Similarity=-0.091 Sum_probs=26.5
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~ 197 (307)
++.+|+=.|+ +.|..+..++.....+++.++.++...+.++
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 186 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALL 186 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 4567887775 4445555444444447888888887766664
No 464
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=24.12 E-value=51 Score=30.89 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+..+|..+..+|+|||.+++..
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VIS 241 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVIS 241 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEE
Confidence 57889999999999999999864
No 465
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.06 E-value=3.2e+02 Score=27.55 Aligned_cols=38 Identities=26% Similarity=0.155 Sum_probs=25.0
Q ss_pred ceEEEEeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHH
Q 021836 159 LVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~---~~~~v~~vD~s~~~l~~A~~ 198 (307)
.+|+=+|| |..+..+.+. ...+++.+|.+++.++.+++
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 34555555 5555544443 23369999999999888875
No 466
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=23.96 E-value=3.5e+02 Score=24.62 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~~-v~~vD~s~~~l~~A~~ 198 (307)
.++.+||=.|+| .|..+..++.....+ +++++.++...+.+++
T Consensus 164 ~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~ 208 (343)
T cd08235 164 KPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK 208 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 356677777764 444444444444446 8888888888777643
No 467
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=23.87 E-value=4.3e+02 Score=23.89 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=25.1
Q ss_pred eEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHH
Q 021836 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (307)
Q Consensus 160 ~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A 196 (307)
++|=+|+= +|......|...+ +|+.+|+.|.+.+..
T Consensus 44 ~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll 80 (252)
T PF06690_consen 44 QALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELL 80 (252)
T ss_pred eEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHh
Confidence 78888852 3433333455556 799999999888776
No 468
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=23.66 E-value=2.4e+02 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=20.9
Q ss_pred eEEEEeccc-cHHHHHHHH-hcC-CcEEEEeCCHHHHHH
Q 021836 160 VALDCGSGI-GRITKNLLI-RYF-NEVDLLEPVSHFLDA 195 (307)
Q Consensus 160 ~ILDiGcGt-G~~t~~ll~-~~~-~~v~~vD~s~~~l~~ 195 (307)
+|.=+|||. |......+. ... .+++.+|.++...+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~ 40 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEG 40 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhH
Confidence 467788865 333222222 233 379999998765443
No 469
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.62 E-value=4.2e+02 Score=23.44 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=29.0
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
++.+||=.|+ +.|..+..++.....+|+++..++.-.+.+++
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 185 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE 185 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 5567887775 56666666555555579999888877777643
No 470
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=23.47 E-value=2.3e+02 Score=27.73 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=27.7
Q ss_pred ceeeEEcc-hh-hhhCChhH---HHHHHHHHHHcCCCCcEEEEEeccCCCCc
Q 021836 253 RYDVIWVQ-WC-IGHLTDDD---FVSFFKRAKVGLKPGGFFVLKENIARSGT 299 (307)
Q Consensus 253 ~fDlIi~~-~~-l~~~~~~d---l~~~l~~l~~~LkpGG~lii~e~~~~~~~ 299 (307)
..|+++.. -+ +..-.++| +.+..+.+...|++|- |++.|...+.|.
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~-LVIlEST~~PGT 134 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGD-LVILESTTPPGT 134 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCC-EEEEecCCCCCc
Confidence 56766543 11 22223334 4677888999999865 555577776664
No 471
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=23.45 E-value=70 Score=30.03 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=26.9
Q ss_pred CceeeEEcchhhhhCChhHHHHHH-HHHHHcCCCCcEEEEEeccCCCCcccCCCCC
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKENIARSGTFLLSHSL 306 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l-~~l~~~LkpGG~lii~e~~~~~~~~~d~~~~ 306 (307)
...|+|++.-.+ ++ +-..++ ++....||||.+||-+.. |.++|.+.|
T Consensus 199 ~~sDvv~lh~pl---t~-~T~~li~~~~l~~mk~ga~lIN~aR----G~vVde~AL 246 (323)
T PRK15409 199 QESDFVCIILPL---TD-ETHHLFGAEQFAKMKSSAIFINAGR----GPVVDENAL 246 (323)
T ss_pred HhCCEEEEeCCC---Ch-HHhhccCHHHHhcCCCCeEEEECCC----ccccCHHHH
Confidence 356888875432 11 223333 356778899988775433 555565544
No 472
>PRK06153 hypothetical protein; Provisional
Probab=23.42 E-value=97 Score=30.06 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCceEEEEecc-ccHHHHHHHHh-cCCcEEEEeCCH
Q 021836 157 QHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVS 190 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~-~~~~v~~vD~s~ 190 (307)
...+|+=+||| +|......|++ +..+++.+|.+.
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 35789999994 67655555554 566899998753
No 473
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=23.41 E-value=1.7e+02 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=21.0
Q ss_pred cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 167 GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
+.|..+..+++....++++++.++.-.+.+++
T Consensus 155 ~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 155 ALGRMLVRLCKADGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 34445554444444479999999988888765
No 474
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=23.15 E-value=1.8e+02 Score=21.16 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=19.4
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
..|+|+..-- +..+.+++..+ ..+.++..++
T Consensus 61 ~advvilav~-----p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 61 EADVVILAVK-----PQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp HTSEEEE-S------GGGHHHHHHHH-HHHHTTSEEE
T ss_pred cCCEEEEEEC-----HHHHHHHHHHH-hhccCCCEEE
Confidence 4688887533 44667788888 6566666554
No 475
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=22.91 E-value=93 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=24.7
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
...|+|+.+..+.. ....-+=+++...||+|++|+=.
T Consensus 216 ~~sD~ivv~~pLt~---~T~~liNk~~~~~mk~g~vlVN~ 252 (336)
T KOG0069|consen 216 ANSDVIVVNCPLTK---ETRHLINKKFIEKMKDGAVLVNT 252 (336)
T ss_pred hhCCEEEEecCCCH---HHHHHhhHHHHHhcCCCeEEEec
Confidence 46799998766532 22233345778899999988754
No 476
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=22.89 E-value=3.9e+02 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=28.8
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.++|=.|+ +.|..+..++.....+++.++.++.-.+.+++
T Consensus 188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~ 232 (398)
T TIGR01751 188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRE 232 (398)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35678888886 45555555555444467888888877777765
No 477
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.83 E-value=5.3e+02 Score=22.75 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=24.9
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHH
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A 196 (307)
++.+|+-.|+ +.|..+..++.....+++.++.+ ...+.+
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~ 183 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELV 183 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHH
Confidence 5678998887 35566665554444478888754 555555
No 478
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=22.78 E-value=3.6e+02 Score=24.76 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=25.4
Q ss_pred CCceEEEEecc-ccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~ 198 (307)
++.+||-.|+| .|..+..+++... ..|+.++.++.-.+.+++
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 45677777653 2333333333333 368999988888877754
No 479
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=22.57 E-value=5.6e+02 Score=23.58 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=24.4
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+|+|+..-- ..+...+++.+...++++..++...|
T Consensus 72 ~~~D~vil~vk-----~~~~~~~~~~l~~~~~~~~iii~~~n 108 (341)
T PRK08229 72 ATADLVLVTVK-----SAATADAAAALAGHARPGAVVVSFQN 108 (341)
T ss_pred cCCCEEEEEec-----CcchHHHHHHHHhhCCCCCEEEEeCC
Confidence 46898886432 22456778888888888776655544
No 480
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=22.55 E-value=1.3e+02 Score=25.03 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=24.2
Q ss_pred CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 251 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.+|++++... ..+......|+|||++++-..
T Consensus 55 ~~~~Dilv~l~~----------~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 55 VGEADILVALDP----------EALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp TSSESEEEESSH----------HHHHHCGTTCETTEEEEEETT
T ss_pred cCCCCEEEEcCH----------HHHHHHhcCcCcCeEEEEECC
Confidence 378999998532 334477788999999988543
No 481
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.55 E-value=69 Score=32.23 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=26.1
Q ss_pred ceeeEEcchhhhhCChhHHHHHH-HHHHHcCCCCcEEEEEeccCCCCcccCCCCC
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKENIARSGTFLLSHSL 306 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l-~~l~~~LkpGG~lii~e~~~~~~~~~d~~~~ 306 (307)
..|+|++.-.+.. +...++ ......||||.+|+-+ .-|.++|.+.|
T Consensus 194 ~aDiV~l~lP~t~----~t~~li~~~~l~~mk~ga~lIN~----aRG~~vde~aL 240 (526)
T PRK13581 194 RADFITLHTPLTP----ETRGLIGAEELAKMKPGVRIINC----ARGGIIDEAAL 240 (526)
T ss_pred hCCEEEEccCCCh----HhhcCcCHHHHhcCCCCeEEEEC----CCCceeCHHHH
Confidence 4688887443211 223344 4677888998877643 23555555443
No 482
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=22.53 E-value=3.2e+02 Score=25.87 Aligned_cols=33 Identities=18% Similarity=-0.088 Sum_probs=22.5
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+|+|+-.-. -...+..+.+.+++||.++..-.
T Consensus 242 ~~D~vid~~G--------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 242 TMDFIIDTVS--------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred CCcEEEECCC--------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 4888875321 12346777888999999987654
No 483
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=1.3e+02 Score=27.27 Aligned_cols=55 Identities=4% Similarity=-0.061 Sum_probs=33.9
Q ss_pred ceeeeccCCcCCCCCCCC---ceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEE
Q 021836 235 KVKIAKKGISADFTPETG---RYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~---~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii 290 (307)
.++++-+|....++..+. ++|+.+.... .-.-+++ -.+++..+++..+|||.+.-
T Consensus 147 ~l~l~~gd~~~~~p~~~~~~~~~dAwflDgF-sP~kNP~mW~~e~l~~~a~~~~~~~~l~t 206 (252)
T COG4121 147 LLGLVIGDAGDGIPPVPRRRPGTDAWFLDGF-RPVKNPEMWEDELLNLMARIPYRDPTLAT 206 (252)
T ss_pred eeeeeeeehhhcCCcccccccCccEEecCCc-cccCChhhccHHHHHHHHhhcCCCCceec
Confidence 345555565545544344 6898885321 1111122 27789999999999999864
No 484
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=22.43 E-value=3.2e+02 Score=24.43 Aligned_cols=41 Identities=7% Similarity=-0.030 Sum_probs=27.8
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~ 197 (307)
++.+||=.|+ +.|..+..++.....+++.+..++...+.++
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 180 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELK 180 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHH
Confidence 5667877776 3666666655555557888887777766664
No 485
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.35 E-value=5.9e+02 Score=23.09 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~ 197 (307)
.++.+||=.|+ +.|..+..+++....++++++.+. ..+.++
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~ 218 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR 218 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH
Confidence 35678888886 445555544554444688887554 555553
No 486
>PLN02256 arogenate dehydrogenase
Probab=22.22 E-value=5.4e+02 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=20.3
Q ss_pred CCceEEEEeccc--cHHHHHHHHhcCCcEEEEeCCHH
Q 021836 157 QHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSH 191 (307)
Q Consensus 157 ~~~~ILDiGcGt--G~~t~~ll~~~~~~v~~vD~s~~ 191 (307)
...+|.=||+|. |.++..+ .....+|+++|.++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~ 70 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDY 70 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccH
Confidence 456788888764 2233322 222236999998863
No 487
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=21.99 E-value=71 Score=22.03 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.2
Q ss_pred CCcEEEEEeccCCCCcccCCCC
Q 021836 284 PGGFFVLKENIARSGTFLLSHS 305 (307)
Q Consensus 284 pGG~lii~e~~~~~~~~~d~~~ 305 (307)
|.|+.+|-|....+|.|+.+.+
T Consensus 41 P~GiWFFNE~~~~dG~FVep~~ 62 (62)
T PF10781_consen 41 PAGIWFFNEKDSPDGTFVEPRQ 62 (62)
T ss_pred CcceEEEecCCCCCcEEeeecC
Confidence 8899999999999999988754
No 488
>PLN02712 arogenate dehydrogenase
Probab=21.85 E-value=3.1e+02 Score=28.58 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=20.9
Q ss_pred CCceEEEEeccc--cHHHHHHHHhcCCcEEEEeCCHH
Q 021836 157 QHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSH 191 (307)
Q Consensus 157 ~~~~ILDiGcGt--G~~t~~ll~~~~~~v~~vD~s~~ 191 (307)
+..+|.=||+|. |.++..+...+ .+|+++|.+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr~~~ 86 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQG-HTVLAHSRSDH 86 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCCHH
Confidence 346788899765 33444332233 36999998754
No 489
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=21.70 E-value=34 Score=32.18 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=17.6
Q ss_pred CceEEEEeccccHHHHHHHHh--cCC-cEEEEeC
Q 021836 158 HLVALDCGSGIGRITKNLLIR--YFN-EVDLLEP 188 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~--~~~-~v~~vD~ 188 (307)
+.++-=+|. |.++..+..+ .+. +|.+.|+
T Consensus 142 gkTvGIiG~--G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGL--GRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEECC
Confidence 445666654 5566654433 233 7999998
No 490
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=21.70 E-value=4e+02 Score=24.64 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=20.5
Q ss_pred ceEEEEeccc-cHHHHHHHHh-cCCcEEEEeCCHH
Q 021836 159 LVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSH 191 (307)
Q Consensus 159 ~~ILDiGcGt-G~~t~~ll~~-~~~~v~~vD~s~~ 191 (307)
.+|-=+|+|. |......+.. ...+|+.+|+.+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 3677888877 4433333333 2226999999766
No 491
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.52 E-value=5.4e+02 Score=22.49 Aligned_cols=34 Identities=12% Similarity=-0.161 Sum_probs=19.8
Q ss_pred CceEEEEecccc-HHHHHH----HHhcCCcEEEEeCCHHH
Q 021836 158 HLVALDCGSGIG-RITKNL----LIRYFNEVDLLEPVSHF 192 (307)
Q Consensus 158 ~~~ILDiGcGtG-~~t~~l----l~~~~~~v~~vD~s~~~ 192 (307)
+..+|=.|+++| .++..+ ++.+. +|+.++.+...
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~ 48 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA 48 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence 457888887642 333333 33333 68888877543
No 492
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=21.42 E-value=3.4e+02 Score=24.78 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=22.5
Q ss_pred eEEEEecccc--HHHHHHHHhcCCcEEEEeCCHHHHHHHH
Q 021836 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 160 ~ILDiGcGtG--~~t~~ll~~~~~~v~~vD~s~~~l~~A~ 197 (307)
+|-=||+|.= .++..++..+. +|++.|.++...+.+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~ 40 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA 40 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence 3555676642 23344443333 6999999988776654
No 493
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=21.37 E-value=4.1e+02 Score=25.24 Aligned_cols=36 Identities=11% Similarity=0.289 Sum_probs=25.2
Q ss_pred CceeeEEcchhhhhCChhHHHHHH-HHHHHcCCCCcEEEEEe
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l-~~l~~~LkpGG~lii~e 292 (307)
...|+|++.- +++....++ ..+...|+||.+|+|+.
T Consensus 70 k~ADVV~llL-----Pd~~t~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 70 RTAQVVQMLL-----PDEQQAHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred hcCCEEEEeC-----CChHHHHHHHHHHHhcCCCCCEEEECC
Confidence 3569988743 333345555 56889999999998864
No 494
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.27 E-value=5.5e+02 Score=23.77 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=28.9
Q ss_pred CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 251 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+|+|+..-= .-+..+.++.+...++|...+++.-|
T Consensus 65 ~~~~Dlviv~vK-----a~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 65 LGPADLVIVTVK-----AYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred cCCCCEEEEEec-----cccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 357999986421 11568889999999999998888766
No 495
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.15 E-value=6.8e+02 Score=23.36 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=55.2
Q ss_pred CCceEEEEeccccHHHHH-HHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKN-LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~-ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|.=+|+|.-..+.. .+.... .++....++..++..++.-...... .....+ ...
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l----~~~~~l-~~~--------------- 64 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYL----GNDVVL-SDT--------------- 64 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccC----CCCccc-CCC---------------
Confidence 446899999887654432 233333 4777778888777766532100000 000000 000
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+. .+........|+|+..-. ...+..+++++...++++..++..-+
T Consensus 65 i~~t-----~d~~~a~~~aDlVilavp-----s~~~~~vl~~i~~~l~~~~~vIsl~k 112 (341)
T PRK12439 65 LRAT-----TDFAEAANCADVVVMGVP-----SHGFRGVLTELAKELRPWVPVVSLVK 112 (341)
T ss_pred eEEE-----CCHHHHHhcCCEEEEEeC-----HHHHHHHHHHHHhhcCCCCEEEEEEe
Confidence 0000 011001235687776432 22567889999999998877766655
No 496
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=21.10 E-value=1.4e+02 Score=29.83 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=26.8
Q ss_pred CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 252 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 252 ~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
...|+|++.- ++.....+.+++...||||..|.++.
T Consensus 96 ~~ADvVviLl-----PDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 96 PQADLVINLT-----PDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HhCCEEEEcC-----ChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 4578888643 33344566789999999999999964
No 497
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=20.99 E-value=1.2e+02 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=22.1
Q ss_pred CceEEEEecc-ccHHHH-HHHHhcCCcEEEEeCCH
Q 021836 158 HLVALDCGSG-IGRITK-NLLIRYFNEVDLLEPVS 190 (307)
Q Consensus 158 ~~~ILDiGcG-tG~~t~-~ll~~~~~~v~~vD~s~ 190 (307)
..+|+=+||| .|.... .+...+..+++.+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3689999996 665433 34445777899999743
No 498
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.85 E-value=2.4e+02 Score=25.41 Aligned_cols=33 Identities=21% Similarity=0.059 Sum_probs=22.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC---cEEEEeCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPV 189 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s 189 (307)
.+..||=.||..|.++..+...... .|+++--+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc
Confidence 4568999999999988876554332 46666543
No 499
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=20.70 E-value=2.4e+02 Score=27.06 Aligned_cols=125 Identities=15% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC--
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG-- 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-- 232 (307)
...+.||.+|+.+.... +++..+. +=-|+++..+.+..+.......... .....+...|.- +...+..
T Consensus 180 d~v~~ld~~~~~~~~~~-~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~----~i~~~i~~gd~~---~~~~~~~d~ 251 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEK-VYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHV----DILLEIEGGDAL---PAETFNTDV 251 (364)
T ss_pred CcEEEEeecccCCcHHH-HHHHHhcccCCCceEEeHHHHHhhhccCCCcccc----cccCceeccccc---cceeccccH
Confidence 45789999999998887 4555443 4478888888888776554331110 011111111110 0000000
Q ss_pred ---ccceeee----ccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 233 ---SKKVKIA----KKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 233 ---~~~i~~~----~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
...+.+. .-|+...-..+-..+|. ..+..|+. +-..++......++|+|.+++.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~--~~~~~f~~~~~~~~~~~~v~~~e~~ 315 (364)
T KOG1269|consen 252 FDLLKSFGFEHLKLEKDLALKSSFPWNTPLT---RDTITHWQ--DKSALFRGRVATLKPGGKVLILEYI 315 (364)
T ss_pred HHHHhhccchhhhhcccccCCCccccccccc---hhheeecc--cccHHHHhHhhccCcCceEEehhhc
Confidence 0000010 00111111112234444 44555666 4477889999999999999998874
No 500
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.55 E-value=2.4e+02 Score=26.81 Aligned_cols=45 Identities=9% Similarity=-0.085 Sum_probs=31.7
Q ss_pred CCCCceEEEEeccccHHHHHHHH--hcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~--~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.++.=+|+|.=.++...-+ ++.++++|+|+++.=.+.|++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 45677788888776544443322 2455999999999999998764
Done!