BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021837
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NIV|A Chain A, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|B Chain B, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|C Chain C, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|D Chain D, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
Length = 222
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 120 KVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHSRPSKIDPARQLDWENFQQSSEI 179
+VR LN KK E+ + E +H+ L++ P ++ P+ ++ + QS I
Sbjct: 16 RVRIALNLKKIAYEKIEVHLVNNGGE--QHS-LQYHQINPQELVPSLDINGQILSQSXAI 72
Query: 180 IDVLSTIHSEVP 191
ID L IH E P
Sbjct: 73 IDYLEEIHPEXP 84
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 99 DSCRPACPLCRGEVTGWVVAD-KVRDYLNEKKRCCEEDQCTFAGTYLELRKHAQLEHPHS 157
D+ R CP C+ GW+ A + LNE Q R A++E PH
Sbjct: 146 DTVRCYCPRCQEAFRGWLEARYGTIEALNEAWGTAFWSQ--------RYRSFAEVELPHL 197
Query: 158 RPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYV 200
++ +P+ LD+ F +S+ + + + E+ R G +V
Sbjct: 198 TVAEPNPSHLLDYYRF--ASDQVRAFNRLQVEILRAHAPGKFV 238
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 163 DPARQLD--WENFQQSSEIIDVLSTIH 187
DPAR LD W +FQQ E+I T H
Sbjct: 11 DPARHLDDLWSDFQQKFEVIPANLTTH 37
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 163 DPARQLD--WENFQQSSEIIDVLSTIH 187
DPAR LD W +FQQ E+I T H
Sbjct: 11 DPARHLDDLWSDFQQKFEVIPANLTTH 37
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 163 DPARQLD--WENFQQSSEIIDVLSTIH 187
DPAR LD W +FQQ E+I T H
Sbjct: 11 DPARHLDDLWSDFQQKFEVIPANLTTH 37
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 111 EVTGWVVADKVRDYLNEKKRCCEE--DQCTF-------AGTYLELRKHAQLEHPH----- 156
+VTG++V + YL EK R + D+ TF AG ++R LE +
Sbjct: 256 DVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFL 315
Query: 157 SRPSKIDPARQLDWENFQQSSEIIDVLSTIHSE 189
S PA+Q D E FQ++ E + ++ E
Sbjct: 316 SNGHVPIPAQQDD-EMFQETLEAMTIMGFTEEE 347
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 111 EVTGWVVADKVRDYLNEKKRCCEE--DQCTF-------AGTYLELRKHAQLEHPH----- 156
+VTG++V + YL EK R + D+ TF AG ++R LE +
Sbjct: 256 DVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFL 315
Query: 157 SRPSKIDPARQLDWENFQQSSEIIDVLSTIHSE 189
S PA+Q D E FQ++ E + ++ E
Sbjct: 316 SNGHVPIPAQQDD-EMFQETLEAMTIMGFTEEE 347
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 111 EVTGWVVADKVRDYLNEKKRCCEE--DQCTF-------AGTYLELRKHAQLEHPH----- 156
+VTG++V + YL EK R + D+ TF AG ++R LE +
Sbjct: 256 DVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFL 315
Query: 157 SRPSKIDPARQLDWENFQQSSEIIDVLSTIHSE 189
S PA+Q D E FQ++ E + ++ E
Sbjct: 316 SNGHVPIPAQQDD-EMFQETLEAMTIMGFTEEE 347
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 111 EVTGWVVADKVRDYLNEKKRCCEE--DQCTF-------AGTYLELRKHAQLEHPHSRPSK 161
+VTG++V + YL EK R + D+ TF AG ++R LE ++
Sbjct: 256 DVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFL 315
Query: 162 ID-----PARQLDWENFQQSSEIIDVLSTIHSE 189
+ PA+Q D E FQ++ E + ++ E
Sbjct: 316 SNGHVPIPAQQ-DDEMFQETLEAMTIMGFTEEE 347
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 111 EVTGWVVADKVRDYLNEKKRCCEE--DQCTF-------AGTYLELRKHAQLEHPHSRPSK 161
+VTG++V + YL EK R + D+ TF AG ++R LE ++
Sbjct: 256 DVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFL 315
Query: 162 ID-----PARQLDWENFQQSSEIIDVLSTIHSE 189
+ PA+Q D E FQ++ E + ++ E
Sbjct: 316 SNGHVPIPAQQ-DDEMFQETLEAMTIMGFTEEE 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,050,195
Number of Sequences: 62578
Number of extensions: 295708
Number of successful extensions: 590
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 14
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)