BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021838
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 21/229 (9%)
Query: 60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSI 119
EN+ + ++ V GA G + ++ +L KG A VR+ ++ P L+
Sbjct: 15 ENLYFQGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQG--------PELRERGA 66
Query: 120 SNFLKHNVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG 179
S+ + N+ E + +I +AVV A G P +D +G + ++ KRG
Sbjct: 67 SDIVVANLEEDFSHAFASI----DAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRG 122
Query: 180 VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 239
+ RFI +SS+ G Y L+AK A+ +++S ++YTI+RPG L
Sbjct: 123 IKRFIXVSSVGTVDPDQGPXNXRHY---------LVAKRLADDELKRSSLDYTIVRPGPL 173
Query: 240 RNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS 288
NE TG + + + +I+R VA+V E + + K E+++
Sbjct: 174 SNEESTGKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLN 222
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 18/157 (11%)
Query: 160 PWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL--TLIAK 217
P +VD G N ++A + GV +++ S MG NP + LN G L+ K
Sbjct: 105 PEQVDWIGQKNQIDAAKVAGVKHIVVVGS-------MGGT-NPDHP-LNKLGNGNILVWK 155
Query: 218 LQAEQYIRKSGINYTIIRPGGLRN-EPPTGNIIMETEDTLYE---GTISRDQVAEVAVEA 273
+AEQY+ SG YTIIR GGL + E +++ +D L + T+ R VAEV ++A
Sbjct: 156 RKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQA 215
Query: 274 LLHPESSYKVVEIISRVDA---PKRSYEDLFGSIKQR 307
LL E+ K ++ S+ + P + ++ LF + R
Sbjct: 216 LLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSISNFLKHNV 127
KIF+ G+TG GK +++ L + + AG R +++ P V +F
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV--------PQYNNVKAVHFDVDWT 53
Query: 128 TEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 187
E AK + G D+ V +G G L KVD +G V L +A K V RFIL+S
Sbjct: 54 PEEXAK--QLHGXDAIINVSGSG---GKSLL---KVDLYGAVKLXQAAEKAEVKRFILLS 105
Query: 188 SILVNGAAMGQILNPAYIF---LNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEP 243
+I L P + IAK A+ Y+ K + ++YTII+PG L E
Sbjct: 106 TIFS--------LQPEKWIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEE 157
Query: 244 PTGNIIMETE 253
TG I + E
Sbjct: 158 ATGLIDINDE 167
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSISNFLKHN 126
KK+F+ G G G I E LL +G V G+ + + KD+P+L V S
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKDHPNLTFVEGS------ 74
Query: 127 VTEGSAKLSEAIGD-DSEAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFI 184
A +++ IGD +AVV A ++ D + + G N+V+A +K V RF+
Sbjct: 75 -IADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFV 133
Query: 185 LISSILVNGAA-------MGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 235
+ L G + NPA I+K E Y+ SG+++ R
Sbjct: 134 YFQTALCYGVKPIQQPVRLDHPRNPAN------SSYAISKSANEDYLEYSGLDFVTFR 185
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSISNFLKHN 126
KKI + GATG +G + Q + G+ V VRD + L + P V + + L+
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD----SSRLPSEGPRPAHVVVGDVLQ-- 57
Query: 127 VTEGSAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 185
+A + + + G D+ V+ T + +P V + G N+V A + GV++ +
Sbjct: 58 ----AADVDKTVAGQDAVIVLLGT-----RNDLSPTTVMSEGARNIVAAMKAHGVDKVVA 108
Query: 186 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPT 245
+S + + +P + + +T ++ + +R+SG+ Y + P + ++P T
Sbjct: 109 CTSAFL-------LWDPTKVPPRLQAVT-DDHIRMHKVLRESGLKYVAVMPPHIGDQPLT 160
Query: 246 G 246
G
Sbjct: 161 G 161
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSISNFLK 124
K KKI + GA+G G ++ + L +GF V A VR +K K +N L++
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI----ENEHLKVKKADVSSL 58
Query: 125 HNVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNL--VEACRKRGVNR 182
V E + ++AV+ A F PGW+ P D V L ++ +K GVNR
Sbjct: 59 DEVCE--------VCKGADAVISA--FNPGWN--NPDIYDETIKVYLTIIDGVKKAGVNR 106
Query: 183 FILISS 188
F+ +
Sbjct: 107 FLXVGG 112
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSISNFL 123
+ +K V G TG +V+ LL KG+AV VRD D K K + L++ + +
Sbjct: 7 IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQK----KVSHLLELQELGDLK 62
Query: 124 KHNVTEGSAKLSEAIGDDSEAVVCATGFQ-----------PGWDLFAPWKVDNFGTVNLV 172
A L++ + ++ C F P D+ P G VN++
Sbjct: 63 IFR-----ADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQ---GVVNVM 114
Query: 173 EAC-RKRGVNRFILISS 188
+AC R + V R IL SS
Sbjct: 115 KACTRAKSVKRVILTSS 131
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 36/211 (17%)
Query: 49 MGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS 108
M ++E + E+ ++ K +F+ GA+G +G+ +++++L +G K + + + K T
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL--IGRRKLTFD 58
Query: 109 KD---NPSLQIVSISNFLKHNVTEGSAKLSEAIGDDSEAVVCATGF---QPGWDLFAPWK 162
++ N + ++V + SA +G C G + G + F +
Sbjct: 59 EEAYKNVNQEVVDFEKLDDY----ASAFQGHDVG------FCCLGTTRGKAGAEGFV--R 106
Query: 163 VDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ 222
VD + E + G F L+SS G + +++L V G + AK++ +
Sbjct: 107 VDRDYVLKSAELAKAGGCKHFNLLSS-------KGADKSSNFLYLQVKG-EVEAKVEELK 158
Query: 223 YIRKSGINYTIIRPGGL---RNEPPTGNIIM 250
+ R Y++ RPG L R E G ++
Sbjct: 159 FDR-----YSVFRPGVLLCDRQESRPGEWLV 184
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD 99
+ + + V GA+G G +V +LL +G+ V+A VRD
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD 38
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 21/94 (22%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSISNFLKHNV 127
KI V GATG +G IV + +G V A VRD KA L +++ +K +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--------ATVATLVKEPL 53
Query: 128 TEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPW 161
L+EA D +AVV A L PW
Sbjct: 54 V-----LTEADLDSVDAVVDA--------LSVPW 74
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT------LSKDNPSLQIVSISN 121
KI + GATG +G RI+E+ +G V A VR+ K T L KD L + +S+
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSD 61
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 127 VTEGS----AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 182
V EGS KL +A+ + VV + G D+ ++V+A ++ + R
Sbjct: 56 VIEGSFQNPGKLEQAVTNAE--VVFVGAMESGSDM-----------ASIVKALSRKNIRR 102
Query: 183 FILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE 242
I +S ++G + + F N+ + + QA +R+S +NYTI+R L N+
Sbjct: 103 VIGVSMAGLSGEF--PVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYND 160
Query: 243 PPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 276
P + + E + + +SR+ V + A+ +LH
Sbjct: 161 PEKTDYELIPEGAQFNDAQVSREAVVK-AIFDILH 194
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 170 NLVEACRKRGVNRFILISSILVNGAAMGQIL--NPAYIFLNVFGLTLIAKLQAEQYIRKS 227
+++ A + V R I + S+ + G+ + N A V G L +A I S
Sbjct: 107 SVIAAXKACDVKRLIFVLSLGIYDEVPGKFVEWNNA-----VIGEPLKPFRRAADAIEAS 161
Query: 228 GINYTIIRPGGLRNEPPTGNII---METEDTLYEGTI-SRDQVAEVAVEALLHPE 278
G+ YTI+RP L +E +II + + + ++GTI SR VA + + + PE
Sbjct: 162 GLEYTILRPAWLTDE----DIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPE 212
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 45 NSTKMGKSEITEEAEENVSVKQKKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVR 98
N ++ IT ++ V+ +KI + G TG G + E LL KG+ V +R
Sbjct: 6 NGSRSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60
>pdb|4IPT|A Chain A, The Crystal Structure Of A Short-chain
Dehydrogenases/reductase (ethylated) From Veillonella
Parvula Dsm 2008
Length = 221
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 170 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 229
++V+A ++ + R I +S ++G + + F N+ + + QA +R+S +
Sbjct: 90 SIVKALSRKNIRRVIGVSXAGLSGEF--PVALEKWTFDNLPISYVQGERQARNVLRESNL 147
Query: 230 NYTIIRPGGLRNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 276
NYTI+R L N+P + + E + + +SR+ V A+ +LH
Sbjct: 148 NYTILRLTWLYNDPEKTDYELIPEGAQFNDAQVSREAVV-XAIFDILH 194
>pdb|3R6D|A Chain A, Crystal Structure Of Nad-Dependent EpimeraseDEHYDRATASE
FROM Veillonella Parvula Dsm 2008 With Cz-Methylated
Lysine
Length = 221
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 170 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 229
++V+A + + R I +S ++G + + F N+ + + QA +R+S +
Sbjct: 90 SIVKALSRXNIRRVIGVSXAGLSGEF--PVALEKWTFDNLPISYVQGERQARNVLRESNL 147
Query: 230 NYTIIRPGGLRNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEALLH 276
NYTI+R L N+P + + E + + +SR+ V + A+ +LH
Sbjct: 148 NYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVVK-AIFDILH 194
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK 102
+ V GA G +VEQLL G+ V+ R K
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK 102
+ V GA G +VEQLL G+ V+ R K
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47
>pdb|1Q87|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Tetragonal Form)
pdb|1Q87|B Chain B, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Tetragonal Form)
pdb|1Q88|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Monoclinic Form)
pdb|1Q88|B Chain B, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Monoclinic Form)
pdb|1Q89|A Chain A, Crystal Structure Of The C-Domain Of The T.Vaginalis Inr
Binding Protein, Ibp39 (Cubic Crystal Form)
Length = 221
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 258 EGTISRDQVAEVAVEALLHPESSYK-VVEIISRVDAPK----RSYEDLF 301
+GT+ RD + E A E PE + +E+IS + AP+ +S DL+
Sbjct: 51 DGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLY 99
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 60 ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVSI 119
E+ ++ K +F+ GA+G +GK +++++L + K + + + K T ++ +
Sbjct: 18 EDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTL--IGRRKLTFEEEAYKNVNQEV 75
Query: 120 SNFLKHNVTEGSAKLSEAIGDDSEAVVCATGF---QPGWDLFAPWKVDNFGTVNLVEACR 176
+F K +V SA +G C G + G + F +VD + E +
Sbjct: 76 VDFEKLDVY-ASAFQGHDVG------FCCLGTTRSKAGAEGFV--RVDRDYVLKSAELAK 126
Query: 177 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRP 236
G F L+SS G + ++++L V G + AK++ ++ R S + RP
Sbjct: 127 AGGCKHFNLLSS-------RGADKSSSFLYLQVKG-EVEAKVEELKFDRLS-----VFRP 173
Query: 237 GGL 239
G L
Sbjct: 174 GVL 176
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 26/141 (18%)
Query: 68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI---------VS 118
++ V G G G IVE LLA+G V + + K P ++ +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERA 61
Query: 119 ISNFLKHNVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR 178
F +V+ +A+ S + + D ++V+ G +NL+EACR+
Sbjct: 62 FREFRPTHVSHQAAQASVKVSVE--------------DPVLDFEVNLLGGLNLLEACRQY 107
Query: 179 GVNRFILISSILVNGAAMGQI 199
GV + + S+ GA G++
Sbjct: 108 GVEKLVFAST---GGAIYGEV 125
>pdb|3MTK|A Chain A, X-Ray Structure Of Diguanylate CyclasePHOSPHODIESTERASE
FRO Caldicellulosiruptor Saccharolyticus, Northeast
Structural Consortium Target Clr27c
pdb|3MTK|B Chain B, X-Ray Structure Of Diguanylate CyclasePHOSPHODIESTERASE
FRO Caldicellulosiruptor Saccharolyticus, Northeast
Structural Consortium Target Clr27c
Length = 178
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 97 VRDLDKAKTTLSKDNPSLQIVSISNFLKHNVTEGSAKLSEAIGDDSEAVVCAT 149
VRDL+K T D I+ IS +K EG+ IG D A++C +
Sbjct: 44 VRDLEKLNVTYGYDLVDELIIHISKRIKDIAGEGNKAFK--IGFDRFAIICKS 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,338,522
Number of Sequences: 62578
Number of extensions: 320278
Number of successful extensions: 1035
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 30
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)