Your job contains 1 sequence.
>021839
MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL
TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL
LSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGK
GGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQ
IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMS
LSASDAN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021839
(307 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2158936 - symbol:HCF109 "high chlorophyll fluo... 669 5.4e-115 2
TIGR_CMR|CHY_0163 - symbol:CHY_0163 "peptide chain releas... 395 2.6e-57 2
TIGR_CMR|GSU_2278 - symbol:GSU_2278 "peptide chain releas... 331 9.8e-48 2
UNIPROTKB|P66026 - symbol:prfB "Peptide chain release fac... 338 1.1e-44 2
UNIPROTKB|Q3Z8Y6 - symbol:prfB "Peptide chain release fac... 364 9.6e-44 2
TIGR_CMR|DET_0570 - symbol:DET_0570 "peptide chain releas... 364 9.6e-44 2
TIGR_CMR|SPO_2585 - symbol:SPO_2585 "peptide chain releas... 308 5.8e-40 2
TIGR_CMR|APH_0479 - symbol:APH_0479 "peptide chain releas... 359 7.4e-40 2
TIGR_CMR|NSE_0604 - symbol:NSE_0604 "peptide chain releas... 328 2.8e-38 2
TIGR_CMR|ECH_0705 - symbol:ECH_0705 "peptide chain releas... 336 3.5e-38 2
TAIR|locus:2010748 - symbol:AT1G56350 species:3702 "Arabi... 329 6.7e-38 2
TIGR_CMR|CJE_1628 - symbol:CJE_1628 "peptide chain releas... 303 7.2e-36 2
TAIR|locus:2082563 - symbol:PrfB3 "peptide chain release ... 243 1.6e-34 2
DICTYBASE|DDB_G0288835 - symbol:prfB "class I peptide cha... 270 2.4e-32 2
UNIPROTKB|P66016 - symbol:prfA "Peptide chain release fac... 285 5.3e-30 2
UNIPROTKB|P07012 - symbol:prfB species:83333 "Escherichia... 303 1.1e-29 2
TIGR_CMR|DET_1210 - symbol:DET_1210 "peptide chain releas... 234 2.7e-27 2
UNIPROTKB|Q9KQ25 - symbol:prfA "Peptide chain release fac... 245 5.8e-27 2
TIGR_CMR|VC_2179 - symbol:VC_2179 "peptide chain release ... 245 5.8e-27 2
TIGR_CMR|CPS_3552 - symbol:CPS_3552 "peptide chain releas... 242 5.8e-27 2
TIGR_CMR|GSU_3104 - symbol:GSU_3104 "peptide chain releas... 245 4.0e-26 2
TIGR_CMR|BA_5572 - symbol:BA_5572 "peptide chain release ... 227 4.8e-26 2
GENEDB_PFALCIPARUM|MAL7P1.20 - symbol:MAL7P1.20 "peptide ... 269 5.1e-26 2
UNIPROTKB|Q8IC21 - symbol:MAL7P1.20 "Peptide chain releas... 269 5.1e-26 2
TIGR_CMR|ECH_0597 - symbol:ECH_0597 "peptide chain releas... 238 2.5e-25 2
TAIR|locus:2099137 - symbol:APG3 "AT3G62910" species:3702... 222 4.0e-25 2
DICTYBASE|DDB_G0283175 - symbol:prfA "peptide chain relea... 213 2.3e-24 2
TIGR_CMR|CBU_1965 - symbol:CBU_1965 "peptide chain releas... 228 1.4e-23 2
UNIPROTKB|E1BXF8 - symbol:MTRF1 "Uncharacterized protein"... 220 1.5e-22 2
TAIR|locus:2041409 - symbol:AT2G47020 species:3702 "Arabi... 215 2.1e-22 2
UNIPROTKB|P0A7I0 - symbol:prfA "peptide chain release fac... 207 3.0e-22 2
TIGR_CMR|CHY_2563 - symbol:CHY_2563 "peptide chain releas... 248 3.9e-21 1
POMBASE|SPAC2F7.17 - symbol:SPAC2F7.17 "mitochondrial pep... 206 1.1e-20 2
FB|FBgn0032486 - symbol:CG5705 species:7227 "Drosophila m... 204 1.8e-20 2
UNIPROTKB|O75570 - symbol:MTRF1 "Peptide chain release fa... 210 2.7e-20 2
UNIPROTKB|B4DG01 - symbol:MTRF1 "Peptide chain release fa... 208 5.9e-20 2
TIGR_CMR|APH_0420 - symbol:APH_0420 "peptide chain releas... 232 2.5e-19 1
MGI|MGI:2384815 - symbol:Mtrf1 "mitochondrial translation... 211 3.0e-19 2
UNIPROTKB|Q3MHI7 - symbol:MTRF1 "Peptide chain release fa... 201 3.5e-19 2
UNIPROTKB|F1MCM1 - symbol:MTRF1L "Peptide chain release f... 214 4.0e-19 2
UNIPROTKB|Q2KI15 - symbol:MTRF1L "Peptide chain release f... 214 4.0e-19 2
UNIPROTKB|F1RJ87 - symbol:MTRF1 "Uncharacterized protein"... 203 5.4e-19 2
TIGR_CMR|NSE_0406 - symbol:NSE_0406 "peptide chain releas... 227 1.2e-18 1
SGD|S000003111 - symbol:MRF1 "Mitochondrial translation r... 198 7.3e-18 2
UNIPROTKB|E2RAT2 - symbol:MTRF1 "Uncharacterized protein"... 199 1.1e-17 2
TIGR_CMR|SO_3833 - symbol:SO_3833 "peptide chain release ... 218 1.2e-17 1
UNIPROTKB|F6V8L3 - symbol:MTRF1L "Uncharacterized protein... 210 4.1e-17 1
UNIPROTKB|F1NW58 - symbol:MTRF1L "Uncharacterized protein... 211 7.7e-17 1
UNIPROTKB|F1S7X5 - symbol:MTRF1L "Uncharacterized protein... 210 1.2e-16 1
UNIPROTKB|E2QTM1 - symbol:MTRF1L "Uncharacterized protein... 210 1.2e-16 1
ZFIN|ZDB-GENE-030131-8198 - symbol:mtrf1l "mitochondrial ... 207 1.5e-16 1
UNIPROTKB|Q9UGC7 - symbol:MTRF1L "Peptide chain release f... 209 1.5e-16 1
CGD|CAL0003702 - symbol:orf19.1303 species:5476 "Candida ... 203 8.0e-16 1
RGD|1598312 - symbol:Mtrf1l "mitochondrial translational ... 201 1.1e-15 1
MGI|MGI:1918830 - symbol:Mtrf1l "mitochondrial translatio... 200 2.9e-15 1
ZFIN|ZDB-GENE-050220-8 - symbol:zgc:113104 "zgc:113104" s... 190 5.4e-15 1
ASPGD|ASPL0000035902 - symbol:AN3462 species:162425 "Emer... 193 9.2e-15 2
TIGR_CMR|SPO_2461 - symbol:SPO_2461 "peptide chain releas... 183 1.3e-14 2
TIGR_CMR|CJE_1784 - symbol:CJE_1784 "peptide chain releas... 196 2.7e-14 1
UNIPROTKB|Q5TF45 - symbol:MTRF1L "Peptide chain release f... 178 1.0e-13 1
WB|WBGene00020993 - symbol:W03F8.3 species:6239 "Caenorha... 170 6.7e-12 2
UNIPROTKB|Q74EJ1 - symbol:GSU0971 "Hydrolase, putative" s... 161 1.1e-11 1
TIGR_CMR|GSU_0971 - symbol:GSU_0971 "peptidyl-tRNA hydrol... 161 1.1e-11 1
GENEDB_PFALCIPARUM|PF14_0265 - symbol:PF14_0265 "peptide ... 169 8.9e-11 1
UNIPROTKB|Q8ILH8 - symbol:PF14_0265 "Peptide chain releas... 169 8.9e-11 1
UNIPROTKB|Q74FR0 - symbol:GSU0546 "Peptidyl-tRNA hydrolas... 151 1.5e-10 1
TIGR_CMR|GSU_0546 - symbol:GSU_0546 "peptidyl-tRNA hydrol... 151 1.5e-10 1
CGD|CAL0005347 - symbol:orf19.5488 species:5476 "Candida ... 141 2.1e-09 1
FB|FBgn0050100 - symbol:CG30100 species:7227 "Drosophila ... 130 3.6e-08 1
POMBASE|SPBC1105.18c - symbol:SPBC1105.18c "peptide relea... 127 7.8e-08 1
UNIPROTKB|F1NSN8 - symbol:F1NSN8 "Uncharacterized protein... 121 3.6e-07 1
UNIPROTKB|Q9H3J6 - symbol:C12orf65 "Probable peptide chai... 121 3.6e-07 1
UNIPROTKB|F5H4X5 - symbol:C12orf65 "Probable peptide chai... 114 2.2e-06 1
TAIR|locus:2006897 - symbol:AT1G33330 species:3702 "Arabi... 130 2.9e-06 1
SGD|S000004271 - symbol:YLR281C "Putative protein of unkn... 112 1.1e-05 1
UNIPROTKB|F1RFL3 - symbol:C12orf65 "Uncharacterized prote... 120 1.1e-05 1
UNIPROTKB|F1M2Z8 - symbol:RGD1563482 "Protein RGD1563482"... 117 2.4e-05 1
UNIPROTKB|Q8EJF4 - symbol:yaeJ "Stop codon-independent pe... 95 4.6e-05 2
TIGR_CMR|SO_0513 - symbol:SO_0513 "prokaryotic and mitoch... 95 4.6e-05 2
MGI|MGI:1919900 - symbol:2810006K23Rik "RIKEN cDNA 281000... 114 6.3e-05 1
UNIPROTKB|E2QXR1 - symbol:C12orf65 "Uncharacterized prote... 117 8.1e-05 1
UNIPROTKB|F1MLX1 - symbol:C17H12orf65 "Uncharacterized pr... 110 0.00014 1
UNIPROTKB|Q5LWS3 - symbol:SPO0127 "Peptidyl-tRNA hydrolas... 89 0.00024 2
TIGR_CMR|SPO_0127 - symbol:SPO_0127 "peptidyl-tRNA hydrol... 89 0.00024 2
UNIPROTKB|Q0BYR4 - symbol:HNE_2699 "Peptidyl-tRNA hydrola... 100 0.00062 1
>TAIR|locus:2158936 [details] [associations]
symbol:HCF109 "high chlorophyll fluorescent 109"
species:3702 "Arabidopsis thaliana" [GO:0003747 "translation
release factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006415 "translational termination"
evidence=IEA;ISS;IMP] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006396 "RNA processing" evidence=IMP] [GO:0009657 "plastid
organization" evidence=IMP] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 EMBL:CP002688 GO:GO:0009570
Gene3D:3.30.160.20 GO:GO:0006396 GO:GO:0009657 GO:GO:0006415
GO:GO:0016149 EMBL:AB018112 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 HSSP:P07012
UniGene:At.9505 EMBL:AY056234 EMBL:AY117253 EMBL:AY084711
IPI:IPI00546331 RefSeq:NP_851096.1 ProteinModelPortal:Q9LVY0
SMR:Q9LVY0 STRING:Q9LVY0 PRIDE:Q9LVY0 EnsemblPlants:AT5G36170.1
GeneID:833614 KEGG:ath:AT5G36170 TAIR:At5g36170 InParanoid:Q9LVY0
OMA:MGWGSQI PhylomeDB:Q9LVY0 ProtClustDB:CLSN2680355
ArrayExpress:Q9LVY0 Genevestigator:Q9LVY0 Uniprot:Q9LVY0
Length = 456
Score = 669 (240.6 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
Identities = 128/146 (87%), Positives = 140/146 (95%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSFSG EVMPLLPEE++ ++IPEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV V
Sbjct: 293 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAV 352
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
RCTEERSQLANK +AL RLKAKL+VIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYK
Sbjct: 353 RCTEERSQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYK 412
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFI 289
LVKDVRTGHETSDI SVMDG+L+PFI
Sbjct: 413 LVKDVRTGHETSDITSVMDGDLDPFI 438
Score = 485 (175.8 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
Identities = 98/144 (68%), Positives = 112/144 (77%)
Query: 1 MQDFYNLRKDVEAASDRVEEIRASXXXXXXXXXXXXXXXXXXDSSFWDNRAEAQETLQAL 60
MQDFY LRKDVE AS RVEEIRAS D+SFWD+R +AQETL +L
Sbjct: 78 MQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSL 137
Query: 61 TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120
D+KD++ LL++FKT ++DA TIVKLTEEMDSTD LLEEA IIKELNK+LD+FELTQL
Sbjct: 138 NDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQL 197
Query: 121 LSGPYDKEGAVISITAGAGGTDAQ 144
LSGPYDKEGAV+ ITAGAGGTDAQ
Sbjct: 198 LSGPYDKEGAVVYITAGAGGTDAQ 221
>TIGR_CMR|CHY_0163 [details] [associations]
symbol:CHY_0163 "peptide chain release factor 2,
programmed frameshift" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003747 "translation release factor
activity" evidence=ISS] [GO:0006415 "translational termination"
evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:3.30.160.20
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_359035.1 ProteinModelPortal:Q3AFP9 STRING:Q3AFP9
GeneID:3727359 KEGG:chy:CHY_0163 PATRIC:21273511 Uniprot:Q3AFP9
Length = 371
Score = 395 (144.1 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 75/145 (51%), Positives = 104/145 (71%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSF+ +V+P + E+ ++++ EE+L+I R+GG GGQ+VNK E+AVRITH+PTG+TV
Sbjct: 213 TSFASVDVLPEVAEDIPEIELKEEELKIETFRSGGAGGQHVNKTESAVRITHLPTGITVV 272
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
C ERSQL N+ A LKAKLL + +++ E+ ++RG+ + WG QIR YVFHPY L
Sbjct: 273 CQNERSQLMNRALAEKLLKAKLLDLEMKKKEEEMAKLRGEQKEIAWGSQIRTYVFHPYSL 332
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
VKD RTG E D+ VMDGE++ FI
Sbjct: 333 VKDHRTGVEVGDVQGVMDGEIDIFI 357
Score = 212 (79.7 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 47/138 (34%), Positives = 74/138 (53%)
Query: 7 LRKDVEAASDRVEEIRASXXXXXXXXXXXXXXXXXXDSSFWDNRAEAQETLQALTDVKDK 66
L++ + S ++EE+R S + FWDN EAQ+TL+ L +KD
Sbjct: 5 LKRSLAEISPKIEEMRVSLDIPGKKELVEKLTAKTYEPDFWDNYTEAQKTLKELNRLKDD 64
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
I + ++ +++L EE ++ + L EA K+L + L + E+ LLSGPYD
Sbjct: 65 IEKYEELLKAQEELTVLLQLLEEEENEE--LAVEAQDKAKKLMEKLHRMEIELLLSGPYD 122
Query: 127 KEGAVISITAGAGGTDAQ 144
K A++S+ AGAGGT+AQ
Sbjct: 123 KNSAIVSLHAGAGGTEAQ 140
>TIGR_CMR|GSU_2278 [details] [associations]
symbol:GSU_2278 "peptide chain release factor 2,
programmed frameshift" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:NP_953327.1
ProteinModelPortal:Q74AS3 SMR:Q74AS3 GeneID:2686956
KEGG:gsu:GSU2278 PATRIC:22027411 ProtClustDB:CLSK828793
Uniprot:Q74AS3
Length = 372
Score = 331 (121.6 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 65/145 (44%), Positives = 95/145 (65%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSF+ V P + E+ ++++I E DL + R+ G GGQ+VN ++AVR+TH+PTG+ V
Sbjct: 213 TSFASVFVFPEI-EDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLTHLPTGIVVA 271
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
C ERSQ NK AL L+AKL ++R + ++ G+ WG QIR+YV HPYK+
Sbjct: 272 CQCERSQHLNKATALRMLRAKLYEKELQEREVQASELAGEKKDIGWGSQIRSYVLHPYKM 331
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
VKD+RTG E+ + +V+DG LE F+
Sbjct: 332 VKDLRTGVESGNPDAVLDGALEDFV 356
Score = 185 (70.2 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 42/134 (31%), Positives = 67/134 (50%)
Query: 11 VEAASDRVEEIRASXXXXXXXXXXXXXXXXXXDSSFWDNRAEAQETLQALTDVKDKINLL 70
VE +R+ ++R S FWDN EAQ+ L+ T ++ I+L
Sbjct: 9 VENFGERIAKLRGSLDIDSKREDIQELEAQIAAPGFWDNNEEAQKVLRERTRIEKLIDLW 68
Query: 71 TDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGA 130
+ DD +++L EE + D L+E ++ L + ++ E ++LSGP+DK
Sbjct: 69 DRLNRQADDIRVLIELGEE--AQDEATLDEVRALNDSLEREVEGAEFQRMLSGPHDKNSC 126
Query: 131 VISITAGAGGTDAQ 144
+SI AGAGGT+AQ
Sbjct: 127 FVSINAGAGGTEAQ 140
>UNIPROTKB|P66026 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.30.160.20 EMBL:BX842582
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 PIR:H70919 RefSeq:NP_217621.1 RefSeq:NP_337713.1
RefSeq:YP_006516568.1 ProteinModelPortal:P66026 SMR:P66026
EnsemblBacteria:EBMYCT00000000199 EnsemblBacteria:EBMYCT00000071451
GeneID:13317912 GeneID:888820 GeneID:926714 KEGG:mtc:MT3188
KEGG:mtu:Rv3105c KEGG:mtv:RVBD_3105c PATRIC:18128778
TubercuList:Rv3105c Uniprot:P66026
Length = 371
Score = 338 (124.0 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 64/146 (43%), Positives = 100/146 (68%)
Query: 144 QTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV 203
QTSF+ EV+P++ E + + IPE D+ + R+ G GGQ+VN ++AVR+THIP+G+ V
Sbjct: 215 QTSFAEVEVLPVV-ETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPSGIVV 273
Query: 204 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYK 263
C E+SQL NKI A+ L+AKLL + +E+ ++ D + WG Q+R+YV HPY+
Sbjct: 274 TCQNEKSQLQNKIAAMRVLQAKLLERKRLEERAELDALKADG-GSSWGNQMRSYVLHPYQ 332
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFI 289
+VKD+RT +E + +V+DG+L+ F+
Sbjct: 333 MVKDLRTEYEVGNPAAVLDGDLDGFL 358
Score = 149 (57.5 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 31/102 (30%), Positives = 56/102 (54%)
Query: 43 DSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLT-EEMDSTDAGLLEEA 101
D WD++ AQ L+ + ++ + + + ++DD + +L EE + A + EA
Sbjct: 41 DPHLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYELAAEEAGAAAADAVAEA 100
Query: 102 ASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
+ +K L ++ E+ LLSG YD+ A+++I +GAGG DA
Sbjct: 101 DAELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDA 142
>UNIPROTKB|Q3Z8Y6 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG1186 GO:GO:0003747
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:YP_181313.1
ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6 GeneID:3230122
KEGG:det:DET0570 PATRIC:21608209 ProtClustDB:CLSK837416
Uniprot:Q3Z8Y6
Length = 362
Score = 364 (133.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 73/145 (50%), Positives = 100/145 (68%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSF+ EVMP E+S+D+ I ED++I R+ G GGQNV KV TAVR+THIP+G+ V
Sbjct: 207 TSFALVEVMPEA-EDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVA 265
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
ERSQ N+ A+ L +KLL + +RA E +I+G+ + AEWG QIR+YV HPYK+
Sbjct: 266 SQTERSQHQNREIAMRILASKLLAVEIAKRAEERAKIKGERISAEWGNQIRSYVLHPYKM 325
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
VKD RT +E + +V++GEL+ FI
Sbjct: 326 VKDHRTDYEVGNAEAVLEGELDGFI 350
Score = 114 (45.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 46 FWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105
FW ++ AQ+ ++ L K + + +++D + + LT E D L E +
Sbjct: 40 FWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVNDLLELFALTHE----DPSLGNEIEREV 95
Query: 106 KELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQ 144
L +D E+ SG YD A++++ AGAGG ++Q
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQ 134
>TIGR_CMR|DET_0570 [details] [associations]
symbol:DET_0570 "peptide chain release factor 2,
programmed frameshift" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1186
GO:GO:0003747 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_181313.1 ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6
GeneID:3230122 KEGG:det:DET0570 PATRIC:21608209
ProtClustDB:CLSK837416 Uniprot:Q3Z8Y6
Length = 362
Score = 364 (133.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 73/145 (50%), Positives = 100/145 (68%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSF+ EVMP E+S+D+ I ED++I R+ G GGQNV KV TAVR+THIP+G+ V
Sbjct: 207 TSFALVEVMPEA-EDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVA 265
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
ERSQ N+ A+ L +KLL + +RA E +I+G+ + AEWG QIR+YV HPYK+
Sbjct: 266 SQTERSQHQNREIAMRILASKLLAVEIAKRAEERAKIKGERISAEWGNQIRSYVLHPYKM 325
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
VKD RT +E + +V++GEL+ FI
Sbjct: 326 VKDHRTDYEVGNAEAVLEGELDGFI 350
Score = 114 (45.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 46 FWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105
FW ++ AQ+ ++ L K + + +++D + + LT E D L E +
Sbjct: 40 FWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVNDLLELFALTHE----DPSLGNEIEREV 95
Query: 106 KELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQ 144
L +D E+ SG YD A++++ AGAGG ++Q
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQ 134
>TIGR_CMR|SPO_2585 [details] [associations]
symbol:SPO_2585 "peptide chain release factor 2"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.160.20 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_167798.1
ProteinModelPortal:Q5LQA8 SMR:Q5LQA8 GeneID:3194310
KEGG:sil:SPO2585 PATRIC:23378573 Uniprot:Q5LQA8
Length = 375
Score = 308 (113.5 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 63/145 (43%), Positives = 95/145 (65%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSFS V P++ ++++++++ D+ I R+ G GGQ+VN ++AVRITHIPTG+ V
Sbjct: 213 TSFSSVWVYPVV-DDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVT 271
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
+ E+SQ N+ A+ LK++L ++R +EI A WG QIR+YV PY++
Sbjct: 272 -SSEKSQHQNRDIAMKALKSRLYQQELDRRNAEINAAHEAKGDAGWGNQIRSYVLQPYQM 330
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
VKD+RTGHETSD V+DG L+ F+
Sbjct: 331 VKDLRTGHETSDTKGVLDGALDGFM 355
Score = 134 (52.2 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 29/101 (28%), Positives = 54/101 (53%)
Query: 43 DSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAA 102
D + WDN AQ+ ++ + D +++ +T + D + +++L E D D ++++A
Sbjct: 41 DPNLWDNPENAQKLMRERQTLVDALDIYKGIETDLADNIELIELGEMEDDQD--VIKDAE 98
Query: 103 SIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
+ +K L + + EL LL G D + I AGAGGT++
Sbjct: 99 AALKALRERAAEKELEALLDGEADGNDTFLEINAGAGGTES 139
>TIGR_CMR|APH_0479 [details] [associations]
symbol:APH_0479 "peptide chain release factor 2,
programmed frameshift" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1186 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 RefSeq:YP_505078.1 ProteinModelPortal:Q2GKM3
STRING:Q2GKM3 GeneID:3930254 KEGG:aph:APH_0479 PATRIC:20949594
ProtClustDB:CLSK747346 Uniprot:Q2GKM3
Length = 376
Score = 359 (131.4 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 69/145 (47%), Positives = 102/145 (70%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSF+ EV P++ E +D++I E+DL I RA G GGQ+VNK E+AVRITHIP+G+ V+
Sbjct: 216 TSFASVEVSPVVDHE-IDIKILEKDLRIDTYRASGAGGQHVNKTESAVRITHIPSGMVVQ 274
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
C RSQ N+ +A S LK++L + +++ + Q + + WG QIR+YV HPY++
Sbjct: 275 CQTSRSQHQNRAEAYSLLKSRLYEMELQEKEKRMAQDHQNKCEIGWGHQIRSYVMHPYRM 334
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
VKD+RTGHET ++ +VM+G+L+ FI
Sbjct: 335 VKDLRTGHETGNVDAVMNGDLDAFI 359
Score = 82 (33.9 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 45 SFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEM-DSTDAGLLEEAAS 103
S WD+ +A+ L + V +LT F+ + + +L E + DS D L +
Sbjct: 45 SLWDDAEKAKSLLSERSRVSA---VLTSFRVLEKEHKDLAELAEMISDSDDRDFLATINA 101
Query: 104 IIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
++ L + Q + + S D ++I +GAGGT++
Sbjct: 102 ELQSLKLRISQKKTECMFSHEADANSCFLTIRSGAGGTES 141
>TIGR_CMR|NSE_0604 [details] [associations]
symbol:NSE_0604 "peptide chain release factor 2,
programmed frameshift" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 eggNOG:COG1186 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 HOGENOM:HOG000074814
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020
RefSeq:YP_506484.1 ProteinModelPortal:Q2GDG2 STRING:Q2GDG2
GeneID:3931929 KEGG:nse:NSE_0604 PATRIC:22681243 OMA:SAVRITY
ProtClustDB:CLSK2527643 Uniprot:Q2GDG2
Length = 365
Score = 328 (120.5 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 64/145 (44%), Positives = 95/145 (65%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSF+ V P + E +++ I E+DL+I RA G GGQ+VNK E+A+RITH+P+ + V+
Sbjct: 214 TSFAKIFVSPCI-EGEINISIDEKDLKIDTYRASGAGGQHVNKTESAIRITHLPSKIVVQ 272
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
RSQ NK +A+ LK++L I ++ ++ R WG QIR+YV HPY++
Sbjct: 273 SQSSRSQHQNKAEAMQMLKSRLYEIELRKKEEKLNAARNVEDSIGWGYQIRSYVLHPYQM 332
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
+KD+RTGHE +I SV+DG+L+ FI
Sbjct: 333 IKDLRTGHEVGNITSVLDGDLDSFI 357
Score = 98 (39.6 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 25/104 (24%), Positives = 55/104 (52%)
Query: 43 DS-SFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGL--LE 99
DS + W++++ AQ L+ + ++ + + ++DD + +++L + D + + LE
Sbjct: 40 DSPTLWEDQSRAQLLLKEKSQIETSLKEFKELSIQLDDLIEMIELASK-DHEEETMKDLE 98
Query: 100 EAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
++KE + + E+ L SG D ++ I +GAGGT++
Sbjct: 99 RELLLLKE---KIQKKEIECLFSGEADGNDCLLEIQSGAGGTES 139
>TIGR_CMR|ECH_0705 [details] [associations]
symbol:ECH_0705 "peptide chain release factor 2,
programmed frameshift" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 eggNOG:COG1186
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_507510.1
ProteinModelPortal:Q2GGC3 STRING:Q2GGC3 GeneID:3927613
KEGG:ech:ECH_0705 PATRIC:20576858 ProtClustDB:CLSK748740
Uniprot:Q2GGC3
Length = 366
Score = 336 (123.3 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 64/145 (44%), Positives = 98/145 (67%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
T+FS V P++ E++ +++I ++DL I RA G GGQ+VNK E+AVRITHIP+G+ V+
Sbjct: 215 TTFSSILVSPVINEDT-NIEILDKDLRIDTYRASGAGGQHVNKTESAVRITHIPSGIVVQ 273
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
C RSQ N +A + LK++L + +++ ++ + WG QIR+YV HPY++
Sbjct: 274 CQNNRSQHQNLAEAHNLLKSRLYQLKLQEKEKKMAEEHNKRCNIGWGNQIRSYVMHPYQM 333
Query: 265 VKDVRTGHETSDIVSVMDGELEPFI 289
VKD+RTGHE ++ SV+DG L+ FI
Sbjct: 334 VKDIRTGHEVGNVNSVLDGNLDSFI 358
Score = 89 (36.4 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 44 SSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAAS 103
+S WD+ + AQ L + +N T+ + + + ++ + + TD LL E +
Sbjct: 44 TSLWDDNSLAQRILCERARISKTLNSFTELEEEYNYYTELLSVIN--NDTDE-LLNELEA 100
Query: 104 IIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
+ +L + + + E+ L S D I I +GAGGT++
Sbjct: 101 GLAKLKEKVQKKEVECLFSNEADHNDCFIEIQSGAGGTES 140
>TAIR|locus:2010748 [details] [associations]
symbol:AT1G56350 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
EMBL:CP002684 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:SAVRITY
IPI:IPI00540527 RefSeq:NP_176032.2 UniGene:At.42791
ProteinModelPortal:F4I532 SMR:F4I532 PRIDE:F4I532
EnsemblPlants:AT1G56350.1 GeneID:842089 KEGG:ath:AT1G56350
Uniprot:F4I532
Length = 482
Score = 329 (120.9 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 66/159 (41%), Positives = 99/159 (62%)
Query: 131 VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 190
++ I+ G TSF+ V+P+L + S V+I + DL I R+GG GGQ+ N ++
Sbjct: 309 LVRISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDS 368
Query: 191 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250
AVRI HIPTG+T C ERSQ +NK A++ L+++L + ++ + Q + W
Sbjct: 369 AVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISW 428
Query: 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 289
G QIR YV HPY++VKD+RT +E SD SV++G+L+ FI
Sbjct: 429 GNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFI 467
Score = 94 (38.1 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 44 SSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAAS 103
S WD+ A + + + K+ + F+ ++ + + ++KL +E D+ L E
Sbjct: 152 SDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKE--ENDSELESETLK 209
Query: 104 IIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
+ ++ + + EL LLS D I + AGAGGT++
Sbjct: 210 ALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTES 249
>TIGR_CMR|CJE_1628 [details] [associations]
symbol:CJE_1628 "peptide chain release factor 2"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG1186
GO:GO:0016149 RefSeq:YP_179609.1 ProteinModelPortal:Q5HSX6
STRING:Q5HSX6 GeneID:3232256 KEGG:cjr:CJE1628 PATRIC:20045053
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
BioCyc:CJEJ195099:GJC0-1658-MONOMER PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 Uniprot:Q5HSX6
Length = 365
Score = 303 (111.7 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
Identities = 62/147 (42%), Positives = 95/147 (64%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TSFS V P L ++ ++++I E+D+ I + RA G GGQ+VNK E+AVRITH PTG+ V+
Sbjct: 214 TSFSSVMVSPEL-DDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQ 272
Query: 205 CTEERSQLANKIKALSRLKAKL--LVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPY 262
C +RSQ NK A LK++L L + ++Q ++ G+ + WG QIR+YV PY
Sbjct: 273 CQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANT----GEKSEIGWGHQIRSYVLFPY 328
Query: 263 KLVKDVRTGHETSDIVSVMDGELEPFI 289
+ VKD R+G S + +++DG+++ I
Sbjct: 329 QQVKDNRSGEAFSQVDNILDGDIKKMI 355
Score = 100 (40.3 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 45 SFWDNRAEAQETLQALTDVKDKI-NLLTDFKTK---MDDAVTIVKLTEEMDSTDAGLLEE 100
SFW + +A + K KI NLL +++ ++DA + L + T+ LE
Sbjct: 44 SFWSDVKQAG----VIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTET--LEA 97
Query: 101 AASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
+ +L + E++ LLSG D + A++SI GAGGT++
Sbjct: 98 LFNDAPKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTES 140
>TAIR|locus:2082563 [details] [associations]
symbol:PrfB3 "peptide chain release factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003747 "translation
release factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006415 "translational termination"
evidence=IEA;ISS] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009772 "photosynthetic electron transport in
photosystem II" evidence=IMP] [GO:0010190 "cytochrome b6f complex
assembly" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=IMP] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0009570 EMBL:CP002686
GO:GO:0043565 Gene3D:3.30.160.20 GO:GO:0009658 GO:GO:0048255
GO:GO:0003730 GO:GO:0009772 GO:GO:0016149 GO:GO:0010190
IPI:IPI00516531 RefSeq:NP_191278.2 UniGene:At.34857
ProteinModelPortal:F4J264 SMR:F4J264 EnsemblPlants:AT3G57190.1
GeneID:824886 KEGG:ath:AT3G57190 OMA:DIIPLFL Uniprot:F4J264
Length = 406
Score = 243 (90.6 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 56/139 (40%), Positives = 88/139 (63%)
Query: 151 EVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERS 210
+++PL S D ++ E DL +S+ K + E V I HIP+GVT++ + ER+
Sbjct: 261 DIIPLFLRASPDFEVKEGDLIVSYP---AKEDHKI--AENMVCIHHIPSGVTLQSSGERN 315
Query: 211 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 270
+ AN+IKAL+RLKAKLLVIA+EQ+ S++ +I + E ++ R+YV +K+V D +T
Sbjct: 316 RFANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNI-LEPREETRSYVSKGHKMVVDRKT 374
Query: 271 GHETSDIVSVMDGELEPFI 289
G E D+ SV+DG + P +
Sbjct: 375 GLEILDLKSVLDGNIGPLL 393
Score = 154 (59.3 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 34/98 (34%), Positives = 58/98 (59%)
Query: 47 WDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIK 106
WD+ A++ E L L D ++ L D K K ++A I++L E MD+ D L E+A
Sbjct: 89 WDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGE-MDAIDYSLFEQAYDSSL 147
Query: 107 ELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQ 144
+++++L +E+++LL YD EGA + I +G+ G +Q
Sbjct: 148 DVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQ 185
>DICTYBASE|DDB_G0288835 [details] [associations]
symbol:prfB "class I peptide chain release factor"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 dictyBase:DDB_G0288835
GO:GO:0005737 Gene3D:3.30.160.20 GenomeReviews:CM000154_GR
eggNOG:COG1186 EMBL:AAFI02000125 GO:GO:0016149
PANTHER:PTHR11075:SF6 RefSeq:XP_636549.1 ProteinModelPortal:Q54IC8
STRING:Q54IC8 EnsemblProtists:DDB0237485 GeneID:8626834
KEGG:ddi:DDB_G0288835 InParanoid:Q54IC8 OMA:LINESHN Uniprot:Q54IC8
Length = 424
Score = 270 (100.1 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 62/158 (39%), Positives = 87/158 (55%)
Query: 131 VISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 190
+I I+ + TSF+ V P+ ++S+ + I +DL R+ G GGQ+VNK E+
Sbjct: 257 LIRISPFSSSGKRHTSFASVVVYPI-SDDSIKINIDPKDLHFETLRSSGAGGQHVNKTES 315
Query: 191 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 250
AVRI HIPTG++V + ERSQ NK L LK+KL +++ K R + K W
Sbjct: 316 AVRIVHIPTGISVLSSSERSQHQNKSNGLLLLKSKLYSHELKKKIEAEKSFRDELGKNSW 375
Query: 251 GQQ--IRNYVFHPYKLVKDVRTGHETSDIVSVMDGELE 286
+RNY HP + VKD RTG E I ++DGE E
Sbjct: 376 ASDSVVRNYSMHPQERVKDQRTGIEVLQISKILDGEEE 413
Score = 104 (41.7 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 27/101 (26%), Positives = 55/101 (54%)
Query: 43 DSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAA 102
D+S D + + Q +++ +NLL+ + +D + +V++++ + D L+E
Sbjct: 104 DASNMDTINQIKNYNQTKQSIEE-LNLLSK---EFNDYLEVVEMSKNIGDND--WLKETR 157
Query: 103 SIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
S+I +L + E+ L++G D +G ++ I AGAGG D+
Sbjct: 158 SLINQLFSNCSELEVKALMNGKDDSKGCLLEIQAGAGGNDS 198
>UNIPROTKB|P66016 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842576 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 PIR:G70773 RefSeq:NP_215815.1 RefSeq:NP_335786.1
RefSeq:YP_006514676.1 ProteinModelPortal:P66016 SMR:P66016
PRIDE:P66016 EnsemblBacteria:EBMYCT00000003633
EnsemblBacteria:EBMYCT00000071350 GeneID:13319881 GeneID:886948
GeneID:924722 KEGG:mtc:MT1338 KEGG:mtu:Rv1299 KEGG:mtv:RVBD_1299
PATRIC:18124710 TubercuList:Rv1299 OMA:VEIHAND Uniprot:P66016
Length = 357
Score = 285 (105.4 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 65/156 (41%), Positives = 92/156 (58%)
Query: 132 ISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETA 191
+ +T G TS +G V P PEE VQI E DL I R+ GKGGQ VN ++A
Sbjct: 188 VPVTESQGRV--HTSAAGVLVYPE-PEEVGQVQIDESDLRIDVFRSSGKGGQGVNTTDSA 244
Query: 192 VRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EW 250
VRITH+PTG+ V C ERSQL NK +AL L A+L +AEEQ ++ R ++ +
Sbjct: 245 VRITHLPTGIVVTCQNERSQLQNKTRALQVLAARLQAMAEEQALADASADRASQIRTVDR 304
Query: 251 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELE 286
++IR Y F P + D R G+++ ++ V+DG+L+
Sbjct: 305 SERIRTYNF-PENRITDHRIGYKSHNLDQVLDGDLD 339
Score = 62 (26.9 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 76 KMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLS--GPYDKEGAVIS 133
K+ A ++ E+ ++D E A++ + + LD +LT +L+ P+D + V+
Sbjct: 53 KLTSARDDLETARELVASDESFAAEVAALEARVGE-LDA-QLTDMLAPRDPHDADDIVLE 110
Query: 134 ITAGAGGTDA 143
+ +G GG ++
Sbjct: 111 VKSGEGGEES 120
>UNIPROTKB|P07012 [details] [associations]
symbol:prfB species:83333 "Escherichia coli K-12"
[GO:0015858 "nucleoside transport" evidence=IMP] [GO:0015864
"pyrimidine nucleoside transport" evidence=IMP] [GO:0015862
"uridine transport" evidence=IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA;IDA] [GO:0006415 "translational
termination" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR Gene3D:3.30.160.20 EMBL:U28375
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 EMBL:M11520 EMBL:J03795 PIR:C65073
RefSeq:NP_417367.1 RefSeq:YP_491092.1 PDB:1GQE PDB:1MI6 PDB:1ML5
PDBsum:1GQE PDBsum:1MI6 PDBsum:1ML5 ProteinModelPortal:P07012
SMR:P07012 DIP:DIP-10559N IntAct:P07012 MINT:MINT-1238444
PaxDb:P07012 PRIDE:P07012 EnsemblBacteria:EBESCT00000002308
EnsemblBacteria:EBESCT00000016130 GeneID:12930712 GeneID:947369
KEGG:ecj:Y75_p2823 KEGG:eco:b2891 PATRIC:32121192 EchoBASE:EB0755
EcoGene:EG10762 BioCyc:EcoCyc:EG10762-MONOMER
BioCyc:ECOL316407:JW5847-MONOMER EvolutionaryTrace:P07012
Genevestigator:P07012 GO:GO:0015862 Uniprot:P07012
Length = 365
Score = 303 (111.7 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 64/152 (42%), Positives = 97/152 (63%)
Query: 138 AGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHI 197
+GG TSFS A V P + ++ +D++I DL I R G GGQ+VN+ E+AVRITHI
Sbjct: 209 SGGR-RHTSFSSAFVYPEV-DDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHI 266
Query: 198 PTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNY 257
PTG+ +C +RSQ NK +A+ ++KAKL + +++ +E + + + WG QIR+Y
Sbjct: 267 PTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSY 326
Query: 258 VFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 289
V + +KD+RTG ET + +V+DG L+ FI
Sbjct: 327 VLDDSR-IKDLRTGVETRNTQAVLDGSLDQFI 357
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 47 WDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIK 106
W+ AQ + + ++ ++ L K ++D +++L E D D EA + +
Sbjct: 47 WNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEAD--DEETFNEAVAELD 104
Query: 107 ELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEES--MDVQ 164
L + L Q E ++ SG YD + I AG+GGT+AQ S E M L ES +
Sbjct: 105 ALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTE 164
Query: 165 IPEE 168
I EE
Sbjct: 165 IIEE 168
Score = 41 (19.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 18/91 (19%), Positives = 34/91 (37%)
Query: 10 DVEAASDRVEEIRASXXXXXXXXXXXXXXXXXXDSSFWDNRAEAQETL-QALTDVKDKIN 68
D +A +R+EE+ A + S + + + + Q L DV +
Sbjct: 26 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLE 85
Query: 69 LLTDFKTKMDDAVTIVKLTEEMDSTDAGLLE 99
L + DD T + E+D+ + L +
Sbjct: 86 LAVE----ADDEETFNEAVAELDALEEKLAQ 112
>TIGR_CMR|DET_1210 [details] [associations]
symbol:DET_1210 "peptide chain release factor 1"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_181923.1 ProteinModelPortal:Q3Z776
STRING:Q3Z776 GeneID:3229489 KEGG:det:DET1210 PATRIC:21609455
OMA:SVMLEIR BioCyc:DETH243164:GJNF-1211-MONOMER Uniprot:Q3Z776
Length = 355
Score = 234 (87.4 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 54/146 (36%), Positives = 86/146 (58%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS + V+P + E +D+ I +D+ + + G GGQNV KV TA+R+THIPTG+ V
Sbjct: 197 TSTATVAVLPQV--EEVDIDINMDDVRVDIFHSSGAGGQNVQKVATAIRLTHIPTGLVVC 254
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYK 263
C +ERSQL NK KA + L+A+L+ + + + E + R V +A+ ++IR Y F P
Sbjct: 255 CQDERSQLKNKNKAFAVLRARLMELEQSKVDEERTESRRAQVGQADRSEKIRTYNF-PQD 313
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFI 289
+ D R G ++ +++G L+ I
Sbjct: 314 RLTDHRIGLTAHNLPHILEGYLDEII 339
Score = 88 (36.0 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 49 NRAEAQETL-QALTDVKDKINLLTDFKT---KMDDAVTIVKLTEEMDSTDAGLLEEAASI 104
N A TL Q D++ K+ + +K +++D ++++ ++ D D + E AS+
Sbjct: 26 NDARLVRTLAQERADLQTKVEMYRRYKAISKELEDTKNLLEIEKDEDMKDM-VRGEIASL 84
Query: 105 IKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
K + Q L L P D + ++ I AG GG +A
Sbjct: 85 EKSMADLYTQMTLELLPKDPNDDKSIIMEIRAGTGGDEA 123
>UNIPROTKB|Q9KQ25 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.160.20 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 245 (91.3 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 59/154 (38%), Positives = 87/154 (56%)
Query: 141 TDAQ----TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH 196
T+AQ TS VMP +PE + +I DL+I R+ G GGQ+VN ++A+RITH
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIP-EIKASDLKIDTFRSSGAGGQHVNTTDSAIRITH 250
Query: 197 IPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIR 255
+PTG+ V C +ERSQ NK KA+S L A++ E +RA+EI R + + + +IR
Sbjct: 251 LPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIR 310
Query: 256 NYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 289
Y + P V D R + VM+G+++ I
Sbjct: 311 TYNY-PQGRVSDHRINLTVYRLTEVMEGDMQSLI 343
Score = 73 (30.8 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 54 QETLQALTDVKDKINLLTD-FKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKAL 112
Q +AL+ ++ +T F+ +V E DA + E A IK A+
Sbjct: 32 QNKFRALSKEYSQLEEITQCFQAYQQAKEDLVAAEEMAQEDDAEMREMAQDEIKAAKAAI 91
Query: 113 ----DQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSG 149
D+ ++ L P D + I AGAGG +A F+G
Sbjct: 92 ERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGI-FAG 131
Score = 37 (18.1 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 102 ASIIKELNKALDQFELTQLLSG 123
ASI+ +L ++++E Q L G
Sbjct: 3 ASILSKLESLVERYEEVQHLLG 24
>TIGR_CMR|VC_2179 [details] [associations]
symbol:VC_2179 "peptide chain release factor 1" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 245 (91.3 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 59/154 (38%), Positives = 87/154 (56%)
Query: 141 TDAQ----TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH 196
T+AQ TS VMP +PE + +I DL+I R+ G GGQ+VN ++A+RITH
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIP-EIKASDLKIDTFRSSGAGGQHVNTTDSAIRITH 250
Query: 197 IPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIR 255
+PTG+ V C +ERSQ NK KA+S L A++ E +RA+EI R + + + +IR
Sbjct: 251 LPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIR 310
Query: 256 NYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 289
Y + P V D R + VM+G+++ I
Sbjct: 311 TYNY-PQGRVSDHRINLTVYRLTEVMEGDMQSLI 343
Score = 73 (30.8 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 54 QETLQALTDVKDKINLLTD-FKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKAL 112
Q +AL+ ++ +T F+ +V E DA + E A IK A+
Sbjct: 32 QNKFRALSKEYSQLEEITQCFQAYQQAKEDLVAAEEMAQEDDAEMREMAQDEIKAAKAAI 91
Query: 113 ----DQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSG 149
D+ ++ L P D + I AGAGG +A F+G
Sbjct: 92 ERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGI-FAG 131
Score = 37 (18.1 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 102 ASIIKELNKALDQFELTQLLSG 123
ASI+ +L ++++E Q L G
Sbjct: 3 ASILSKLESLVERYEEVQHLLG 24
>TIGR_CMR|CPS_3552 [details] [associations]
symbol:CPS_3552 "peptide chain release factor 1"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 OMA:EMPEINP
TIGRFAMs:TIGR00019 RefSeq:YP_270226.1 ProteinModelPortal:Q47Y94
SMR:Q47Y94 STRING:Q47Y94 GeneID:3522324 KEGG:cps:CPS_3552
PATRIC:21470035 BioCyc:CPSY167879:GI48-3580-MONOMER Uniprot:Q47Y94
Length = 362
Score = 242 (90.2 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 57/143 (39%), Positives = 86/143 (60%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS VMP +PE ++I + DL++ RA G GGQ+VNK ++A+RITHIPTGV V
Sbjct: 200 TSACTVVVMPEIPEADA-IEINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVE 258
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EWGQQIRNYVFHPYK 263
C E+RSQ N+ +A+S L+A+L +E+R SE + R + V + + ++IR Y F P
Sbjct: 259 CQEQRSQHKNRAQAMSVLQARLQQAEDEKRRSEEESSRRNLVASGDRSERIRTYNF-PQG 317
Query: 264 LVKDVRTGHETSDIVSVMDGELE 286
+ D R + +M+G L+
Sbjct: 318 RMSDHRINLTLYRLNEIMEGSLQ 340
Score = 76 (31.8 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 54 QETLQALTDVKDKINLLT----DFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELN 109
QE +AL+ +++ +T ++K+ DD T + ++ D D + E A K+
Sbjct: 32 QEKFRALSKEFKQLDAVTSVFNNYKSAEDDFSTAELMLKD-DDPD--MREMAQEEFKDAK 88
Query: 110 KAL----DQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSG 149
KA+ D+ ++ L P D + I AGAGG +A F+G
Sbjct: 89 KAVADIADELQILLLPRDPNDDNNCFVEIRAGAGGDEAAI-FAG 131
>TIGR_CMR|GSU_3104 [details] [associations]
symbol:GSU_3104 "peptide chain release factor 1"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 OMA:SVMLEIR RefSeq:NP_954145.1
ProteinModelPortal:Q748B1 SMR:Q748B1 GeneID:2688463
KEGG:gsu:GSU3104 PATRIC:22029063
BioCyc:GSUL243231:GH27-3086-MONOMER Uniprot:Q748B1
Length = 355
Score = 245 (91.3 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 60/148 (40%), Positives = 88/148 (59%)
Query: 141 TDAQTSF-SGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIP 198
T+AQ + A + +LPE E ++V I DL+I RA G GGQ+VNK E+AVRITHIP
Sbjct: 186 TEAQGRIHTSACTVAVLPEAEDIEVDINPADLKIDVYRASGAGGQHVNKTESAVRITHIP 245
Query: 199 TGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNY 257
TG+ V C +ERSQ+ N+ KA+ LK K+L +++ + I R V + ++IR Y
Sbjct: 246 TGIVVECQDERSQIKNRAKAMKVLKTKILDGLHQEQNARIAADRKQQVGSGDRSERIRTY 305
Query: 258 VFHPYKLVKDVRTGHETSDIVSVMDGEL 285
F P + D R G + S+M+G++
Sbjct: 306 NF-PQGRMTDHRIGLTLYRLDSLMEGDI 332
Score = 65 (27.9 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 82 TIVKLTEEMDST-----DAGLLEEAASIIKELNKALDQFE----LTQLLSGPYDKEGAVI 132
T K+ EEM+ D + E A + ++EL + ++ E L L P D ++
Sbjct: 50 TYKKVLEEMEGNRELLADPEMKEMAQAELEELEQRQEELEGEIKLLLLPRDPNDDRNVIL 109
Query: 133 SITAGAGGTDAQTSFSG 149
I AG GG D F+G
Sbjct: 110 EIRAGTGG-DESALFAG 125
Score = 39 (18.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 21/114 (18%), Positives = 51/114 (44%)
Query: 50 RAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELN 109
+AE +E Q +++ +I LL + DD I+++ ++ L A + + +
Sbjct: 75 QAELEELEQRQEELEGEIKLLLLPRDPNDDRNVILEIRAGTGGDESALF--AGDLFRMYS 132
Query: 110 KALDQFEL-TQLLSGPYDKEGA---VISITAGAGGTDAQTSF-SGAEVMPLLPE 158
+ ++ +++S + G ++++ G G A+ + SG + +PE
Sbjct: 133 RFAERNRWKVEVMSASESERGGFKEIVALIEGQG-VFAKLKYESGTHRVQRVPE 185
>TIGR_CMR|BA_5572 [details] [associations]
symbol:BA_5572 "peptide chain release factor 1"
species:198094 "Bacillus anthracis str. Ames" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:NP_847729.1
RefSeq:YP_022240.1 RefSeq:YP_031417.1 ProteinModelPortal:Q81JX1
SMR:Q81JX1 DNASU:1085262 EnsemblBacteria:EBBACT00000012375
EnsemblBacteria:EBBACT00000014683 EnsemblBacteria:EBBACT00000022198
GeneID:1085262 GeneID:2819896 GeneID:2852042 KEGG:ban:BA_5572
KEGG:bar:GBAA_5572 KEGG:bat:BAS5178
BioCyc:BANT260799:GJAJ-5253-MONOMER
BioCyc:BANT261594:GJ7F-5432-MONOMER Uniprot:Q81JX1
Length = 355
Score = 227 (85.0 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 51/137 (37%), Positives = 81/137 (59%)
Query: 155 LLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LPE E +++ I E+D+ + + G GGQ+VN +AVR+TH+PTGV V C +E+SQ+
Sbjct: 204 VLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSAVRLTHLPTGVVVSCQDEKSQIK 263
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGH 272
NK KA+ L+A++ ++ +E Q R AV + ++IR Y F P V D R G
Sbjct: 264 NKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDRSERIRTYNF-PQNRVTDHRIGL 322
Query: 273 ETSDIVSVMDGELEPFI 289
+ ++ G+L+ FI
Sbjct: 323 TIQKLDQILQGKLDDFI 339
Score = 85 (35.0 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 32/132 (24%), Positives = 64/132 (48%)
Query: 50 RAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELN 109
+++ QET++ + KD L D K ++D KL EM +++E S ++
Sbjct: 38 QSDIQETVEVYREYKDVREQLKDAKAMLED-----KLDAEMRE----MVKEEVSELESQE 88
Query: 110 KAL-DQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPEESMDVQ-IPE 167
K L ++ ++ + P D + ++ + AGG +A F+G ++ + + +VQ
Sbjct: 89 KTLSERLKILLVPKDPNDDKNVIVEVRGAAGGDEAAL-FAG-DLYRMYSRYA-EVQGWKT 145
Query: 168 EDLEISFSRAGG 179
E +E S++ GG
Sbjct: 146 EIIEASYTELGG 157
>GENEDB_PFALCIPARUM|MAL7P1.20 [details] [associations]
symbol:MAL7P1.20 "peptide chain release factor,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AL844506 GO:GO:0016149 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 RefSeq:XP_001348982.1 HSSP:P07012
ProteinModelPortal:Q8IC21 IntAct:Q8IC21 MINT:MINT-1551615
EnsemblProtists:MAL7P1.20:mRNA GeneID:2655192 KEGG:pfa:MAL7P1.20
EuPathDB:PlasmoDB:PF3D7_0704900 ProtClustDB:CLSZ2434502
Uniprot:Q8IC21
Length = 352
Score = 269 (99.8 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 59/129 (45%), Positives = 84/129 (65%)
Query: 162 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSR 221
D I + DL I R+GGKGGQNVNKVETAVRI H PT ++V+ + ER+QL NK AL R
Sbjct: 218 DFVINKSDLVIQTMRSGGKGGQNVNKVETAVRILHKPTNISVKASSERTQLLNKRNALKR 277
Query: 222 LKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVM 281
+ KLL + E ++ ++ ++ +G+QIRNYV + K++KD RT ++DI V+
Sbjct: 278 IYEKLLYLQTEALKNKKYELANKSL-THFGEQIRNYVLYGNKMIKDTRTNVFSTDIDKVL 336
Query: 282 -DGELEPFI 289
GE++ FI
Sbjct: 337 YQGEIDIFI 345
Score = 40 (19.1 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 125 YDKEGAVISITAGAGGTDA 143
Y K + +++G GGT+A
Sbjct: 47 YFKNSCSLILSSGTGGTEA 65
>UNIPROTKB|Q8IC21 [details] [associations]
symbol:MAL7P1.20 "Peptide chain release factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AL844506 GO:GO:0016149 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 RefSeq:XP_001348982.1 HSSP:P07012
ProteinModelPortal:Q8IC21 IntAct:Q8IC21 MINT:MINT-1551615
EnsemblProtists:MAL7P1.20:mRNA GeneID:2655192 KEGG:pfa:MAL7P1.20
EuPathDB:PlasmoDB:PF3D7_0704900 ProtClustDB:CLSZ2434502
Uniprot:Q8IC21
Length = 352
Score = 269 (99.8 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 59/129 (45%), Positives = 84/129 (65%)
Query: 162 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSR 221
D I + DL I R+GGKGGQNVNKVETAVRI H PT ++V+ + ER+QL NK AL R
Sbjct: 218 DFVINKSDLVIQTMRSGGKGGQNVNKVETAVRILHKPTNISVKASSERTQLLNKRNALKR 277
Query: 222 LKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVM 281
+ KLL + E ++ ++ ++ +G+QIRNYV + K++KD RT ++DI V+
Sbjct: 278 IYEKLLYLQTEALKNKKYELANKSL-THFGEQIRNYVLYGNKMIKDTRTNVFSTDIDKVL 336
Query: 282 -DGELEPFI 289
GE++ FI
Sbjct: 337 YQGEIDIFI 345
Score = 40 (19.1 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 125 YDKEGAVISITAGAGGTDA 143
Y K + +++G GGT+A
Sbjct: 47 YFKNSCSLILSSGTGGTEA 65
>TIGR_CMR|ECH_0597 [details] [associations]
symbol:ECH_0597 "peptide chain release factor 1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:YP_507408.1
ProteinModelPortal:Q2GGM5 SMR:Q2GGM5 STRING:Q2GGM5 GeneID:3927422
KEGG:ech:ECH_0597 PATRIC:20576648
BioCyc:ECHA205920:GJNR-599-MONOMER Uniprot:Q2GGM5
Length = 359
Score = 238 (88.8 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 58/147 (39%), Positives = 90/147 (61%)
Query: 148 SGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 206
+ A + +LPE E +D++I E+DL I R+ G GGQ+VN ++AVRITHIP+G+ V
Sbjct: 199 TSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVIQQ 258
Query: 207 EERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLV 265
+E+SQ NK KAL L+A+L + +++R +EI Q+R + + ++IR Y F P +
Sbjct: 259 DEKSQHKNKSKALKVLRARLYNLEKQKRDAEISQMRKSQIGSGDRSERIRTYNF-PQSRI 317
Query: 266 KDVR---TGHETSDIVSVMDGELEPFI 289
D R T + DI+ +G L+ FI
Sbjct: 318 TDHRINLTLYRLDDIMK--EGNLDEFI 342
Score = 65 (27.9 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 26/99 (26%), Positives = 43/99 (43%)
Query: 45 SFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASI 104
SF E E L ++ V D+ N+L +++ + + E+ S EE
Sbjct: 31 SFVAASKEYSELLPVIS-VIDQYNILQKDIAGLEELINNPETDHELKSLAK---EEFYER 86
Query: 105 IKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
K+L K + +L+ L D A++ I AG GG +A
Sbjct: 87 QKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEA 125
>TAIR|locus:2099137 [details] [associations]
symbol:APG3 "AT3G62910" species:3702 "Arabidopsis
thaliana" [GO:0003747 "translation release factor activity"
evidence=IGI;ISS] [GO:0006415 "translational termination"
evidence=IGI;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009658 "chloroplast organization" evidence=IMP;NAS]
[GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP]
[GO:0032544 "plastid translation" evidence=IGI] [GO:0006783 "heme
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0034660 "ncRNA metabolic process"
evidence=RCA] [GO:0042793 "transcription from plastid promoter"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.30.160.20
GO:GO:0009658 GO:GO:0010027 GO:GO:0003747 GO:GO:0032544
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
TIGRFAMs:TIGR00019 OMA:SVMLEIR HSSP:P07012 EMBL:AY090253
EMBL:AY125535 EMBL:AB109893 IPI:IPI00529197 RefSeq:NP_191850.2
UniGene:At.28015 ProteinModelPortal:Q8RX79 SMR:Q8RX79 STRING:Q8RX79
PaxDb:Q8RX79 PRIDE:Q8RX79 EnsemblPlants:AT3G62910.1 GeneID:825466
KEGG:ath:AT3G62910 TAIR:At3g62910 InParanoid:Q8RX79
PhylomeDB:Q8RX79 ProtClustDB:CLSN2690621 Genevestigator:Q8RX79
Uniprot:Q8RX79
Length = 422
Score = 222 (83.2 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 54/148 (36%), Positives = 87/148 (58%)
Query: 141 TDAQTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPT 199
T + S A V ++PE + ++V I +D+E++ +R+GG GGQNVNKVETA+ + H P+
Sbjct: 248 TQGRVHTSTATVA-IMPEADEVEVVIDPKDIELTSARSGGAGGQNVNKVETAIDLFHKPS 306
Query: 200 GVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYV 258
G+ + CTEER+Q+ NK +A L+AKL I ++ +I+ R V ++IR Y
Sbjct: 307 GIRIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQEKIRNERKSQVGTGARSEKIRTYN 366
Query: 259 FHPYKLVKDVRTGHETSDIVSVMDGELE 286
+ + V D R + + + +DG LE
Sbjct: 367 YKDSR-VTDHRLKMNFA-LTTFLDGALE 392
Score = 89 (36.4 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 26/104 (25%), Positives = 50/104 (48%)
Query: 43 DSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEM-DSTD-AGLL-E 99
D N++E Q+ Q+++++ + + + FK + L +E D D A ++
Sbjct: 77 DPDVVSNQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKVLAKEAGDDEDMAEMIGS 136
Query: 100 EAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
E S+ KE+ + Q ++ L S P D ++ + AG GG +A
Sbjct: 137 EINSLTKEIEELEKQLKVLLLPSDPLDARNILLEVRAGTGGDEA 180
>DICTYBASE|DDB_G0283175 [details] [associations]
symbol:prfA "peptide chain release factor 1"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
dictyBase:DDB_G0283175 GO:GO:0005737 GenomeReviews:CM000153_GR
Gene3D:3.30.160.20 EMBL:AAFI02000051 GO:GO:0016149 eggNOG:COG0216
KO:K02835 RefSeq:XP_639198.1 ProteinModelPortal:Q54RE7
STRING:Q54RE7 EnsemblProtists:DDB0237484 GeneID:8623973
KEGG:ddi:DDB_G0283175 InParanoid:Q54RE7 OMA:HAAICIN
ProtClustDB:CLSZ2430394 Uniprot:Q54RE7
Length = 430
Score = 213 (80.0 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 53/141 (37%), Positives = 85/141 (60%)
Query: 155 LLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LPE + +D+QI + DL++ R+ G GGQ+VN ++AVRITH+PTG+TV +ERSQ
Sbjct: 278 ILPEPKDVDIQIHDRDLKVDIYRSSGNGGQSVNTTDSAVRITHLPTGITVAMQDERSQHQ 337
Query: 214 NKIKALSRLKAKLL----VIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVR 269
N+ KA+ LKA++ + + +R SE G A+++E +IR Y + P + D R
Sbjct: 338 NRSKAMKILKARIYERERIRLQNERVSERNAQIGSALRSE---RIRTYNY-PQDRITDHR 393
Query: 270 TGHETSDIVSVMDGE-LEPFI 289
++ S M+ + L+ FI
Sbjct: 394 VSIN-GNLNSCMNSDGLDSFI 413
Score = 92 (37.4 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 34/140 (24%), Positives = 65/140 (46%)
Query: 43 DSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTI-VKLTEEMDSTDAGLLEEA 101
DS+ ++E ++ + L + + + D K+ + + L EE D +++
Sbjct: 94 DSNMGLGQSEIKKISKELQETAEPLGYFGDLIEKLKELKELQTMLVEETDEDGKQMIKSD 153
Query: 102 ASIIKELN-KALDQFELTQLLSGPYDKEG-AVISITAGAGGTDAQTSFSGAEVMPLLPEE 159
+ +K+ + L++ L LL G D G A++ I AG GG++AQ F+ +V +
Sbjct: 154 INKLKQEEIEPLEKQLLFSLLPGSKDDAGDAILEIRAGTGGSEAQL-FT-QDVYEMYRSY 211
Query: 160 SMDVQIPEEDLEISFSRAGG 179
+ E LE+S + GG
Sbjct: 212 CLQKGWTFEPLELSVTEVGG 231
Score = 39 (18.8 bits), Expect = 7.7e-19, Sum P(2) = 7.7e-19
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 132 ISITAGAGGTDAQTSFSGAEVMPLLPEES 160
+S+T G D S SG V L ES
Sbjct: 224 LSVTEVGGYRDVTVSVSGKGVFGFLKYES 252
>TIGR_CMR|CBU_1965 [details] [associations]
symbol:CBU_1965 "peptide chain release factor 1"
species:227377 "Coxiella burnetii RSA 493" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016149 EMBL:X78969 eggNOG:COG0216 HOGENOM:HOG000074815
KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
PIR:A61648 RefSeq:NP_820940.1 ProteinModelPortal:P47849 SMR:P47849
PRIDE:P47849 GeneID:1209878 KEGG:cbu:CBU_1965 PATRIC:17932673
BioCyc:CBUR227377:GJ7S-1939-MONOMER Uniprot:P47849
Length = 361
Score = 228 (85.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 56/149 (37%), Positives = 88/149 (59%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS +MP + +E ++I +L I RA G GGQ+VN+ ++A+RITH+PTGV V
Sbjct: 200 TSACTVAIMPEV-DEIDQIKINPAELRIDTFRASGAGGQHVNRTDSAIRITHLPTGVVVE 258
Query: 205 CTEERSQLANKIKALSRLKAKLLVIA----EEQRASEIKQIRGDAVKAEWGQQIRNYVFH 260
C +ERSQ NK +A+S L++KLL ++++A++ K + G ++E +IR Y F
Sbjct: 259 CQDERSQHKNKARAMSLLQSKLLAAERAKQDQEQAAKRKSLVGSGDRSE---RIRTYNF- 314
Query: 261 PYKLVKDVRTGHETSDIVSVMDGELEPFI 289
P V D R + V++G+L+P I
Sbjct: 315 PQGRVTDHRINLTLYQLDEVIEGDLDPVI 343
Score = 61 (26.5 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 23/108 (21%), Positives = 45/108 (41%)
Query: 43 DSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAA 102
DS+ +++ +E + ++ + F+ + ++ +E D L EE
Sbjct: 25 DSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEKAIESAEEMQQEKDPELRKLAEEEL 84
Query: 103 SIIKELNKAL-DQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSG 149
+ + L DQ +L + P D+ + I AG GG +A F+G
Sbjct: 85 EQLTLKKEELEDQLKLLLVPKDPNDERNVFLEIRAGTGGNEAAI-FAG 131
>UNIPROTKB|E1BXF8 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016149 "translation release factor activity, codon
specific" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
OMA:VWLFRHP EMBL:AADN02005497 IPI:IPI00591431
Ensembl:ENSGALT00000027399 Uniprot:E1BXF8
Length = 417
Score = 220 (82.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 56/145 (38%), Positives = 82/145 (56%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP+ E +DV++ +DL I RA G GGQ+VNK ++AVRI H+PTGV
Sbjct: 242 QRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHVNKTDSAVRIVHLPTGVV 301
Query: 203 VRCTEERSQLANKIKALSRLKAKLLV-IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHP 261
V C +ERSQ NK AL L+AKL I E+Q + E + ++IR Y F
Sbjct: 302 VECQQERSQQMNKEIALRTLRAKLYQQIIEKQLSQEQSARKLQLGTRAQSERIRTYNFTQ 361
Query: 262 YKLVKDVRTGHETSDIVSVMDGELE 286
+ V D R ++ +I ++ G+ E
Sbjct: 362 DR-VTDHRISYDARNIKEILSGKEE 385
Score = 66 (28.3 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 48 DNRAE-AQETLQAL-TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105
D++ E Q TL+ D+ + + + + + E+DS D L E A
Sbjct: 65 DSKNEFEQRTLRRRRADLSPVATAFQEIREAESELQELETMCRELDSRDEKQLLELALEE 124
Query: 106 KE-LNKALDQF--ELTQLL--SGPYDKEGAVISITAG--AGGTDAQ 144
KE L+K ++ +L QLL YDK ++ +TAG GG Q
Sbjct: 125 KETLDKKINTLCRKLFQLLVPKEKYDKSHVILEVTAGRTTGGDICQ 170
>TAIR|locus:2041409 [details] [associations]
symbol:AT2G47020 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IEA] [GO:0006415
"translational termination" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:3.30.160.20 GO:GO:0016149
KO:K02835 OMA:EMPEINP TIGRFAMs:TIGR00019 EMBL:BT030058
IPI:IPI00517548 RefSeq:NP_182225.3 UniGene:At.43988
ProteinModelPortal:A2RVR7 SMR:A2RVR7 PRIDE:A2RVR7
EnsemblPlants:AT2G47020.1 GeneID:819316 KEGG:ath:AT2G47020
TAIR:At2g47020 PhylomeDB:A2RVR7 Genevestigator:Q3E6W0
Uniprot:A2RVR7
Length = 413
Score = 215 (80.7 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 56/138 (40%), Positives = 77/138 (55%)
Query: 155 LLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +DVQ+ EDL I R+GG GGQ+ N +AVRI H+PTG+ V +ERSQ
Sbjct: 258 ILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHM 317
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGH 272
N+ KAL L A+L I + S ++R D + + +IR Y F P V D R G
Sbjct: 318 NRAKALKVLCARLYEIERLRIQSSRSKLRSDQIGSGDRSGRIRTYNF-PQGRVTDHRVGI 376
Query: 273 ETSDIVSVMDGE-LEPFI 289
I +M GE L+ FI
Sbjct: 377 THHAIEDMMQGENLDMFI 394
Score = 70 (29.7 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 60 LTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKEL---NKALDQFE 116
L ++D + L+ D + K + + L E S D +L+ A + E K L
Sbjct: 91 LRKLRDSMLLINDLRAKQKEIDGLKSLVSE-SSDDKDMLDLAVGELDEAVEEEKRLQTLL 149
Query: 117 LTQLL-SGPYDKEGAVISITAGAGGTDA 143
L LL D+ ++ + AG GG +A
Sbjct: 150 LKSLLPKDEADERDCILEVRAGTGGEEA 177
>UNIPROTKB|P0A7I0 [details] [associations]
symbol:prfA "peptide chain release factor RF1"
species:83333 "Escherichia coli K-12" [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA;IDA] [GO:0006415
"translational termination" evidence=IEA;IMP] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
Gene3D:3.30.160.20 GO:GO:0043022 GO:GO:0016149 EMBL:M25323
EMBL:U18555 EMBL:D28567 PDB:2B3T PDBsum:2B3T eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 EMBL:M11519 PIR:H64867 RefSeq:NP_415729.1
RefSeq:YP_489478.1 ProteinModelPortal:P0A7I0 SMR:P0A7I0
DIP:DIP-35936N IntAct:P0A7I0 MINT:MINT-1219241 PaxDb:P0A7I0
PRIDE:P0A7I0 EnsemblBacteria:EBESCT00000004821
EnsemblBacteria:EBESCT00000015260 GeneID:12931113 GeneID:949002
KEGG:ecj:Y75_p1183 KEGG:eco:b1211 PATRIC:32117674 EchoBASE:EB0754
EcoGene:EG10761 BioCyc:EcoCyc:EG10761-MONOMER
BioCyc:ECOL316407:JW1202-MONOMER EvolutionaryTrace:P0A7I0
Genevestigator:P0A7I0 Uniprot:P0A7I0
Length = 360
Score = 207 (77.9 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 57/147 (38%), Positives = 78/147 (53%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS VMP LP+ + I DL I R+ G GGQ+VN ++A+RITH+PTG+ V
Sbjct: 198 TSACTVAVMPELPDAELP-DINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVE 256
Query: 205 CTEERSQLANKIKALSRLKAKLLV--IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPY 262
C +ERSQ NK KALS L A++ +A+ Q+A E R + + R Y F P
Sbjct: 257 CQDERSQHKNKAKALSVLGARIHAAEMAKRQQA-EASTRRNLLGSGDRSDRNRTYNF-PQ 314
Query: 263 KLVKDVRTGHETSDIVSVMDGELEPFI 289
V D R + VM+G+L+ I
Sbjct: 315 GRVTDHRINLTLYRLDEVMEGKLDMLI 341
Score = 73 (30.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 26/101 (25%), Positives = 50/101 (49%)
Query: 50 RAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELN 109
RA ++E Q L+DV TD++ +D T + ++ + + + ++ KE +
Sbjct: 36 RALSREYAQ-LSDVS---RCFTDWQQVQEDIETAQMMLDDPEMRE--MAQDELREAKEKS 89
Query: 110 KALDQ-FELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSG 149
+ L+Q ++ L P D+ A + + AG GG +A F+G
Sbjct: 90 EQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAAL-FAG 129
>TIGR_CMR|CHY_2563 [details] [associations]
symbol:CHY_2563 "peptide chain release factor 1"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0
OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
RefSeq:YP_361356.1 ProteinModelPortal:Q3A928 SMR:Q3A928
STRING:Q3A928 GeneID:3727190 KEGG:chy:CHY_2563 PATRIC:21278175
BioCyc:CHYD246194:GJCN-2562-MONOMER Uniprot:Q3A928
Length = 358
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 63/174 (36%), Positives = 92/174 (52%)
Query: 135 TAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRI 194
T +GG TS + V+P E ++V+I DL I A G GGQ+VNK E+AVRI
Sbjct: 188 TTESGGR-IHTSTATVAVLP--EAEEVEVEINPNDLRIDVFCASGAGGQHVNKTESAVRI 244
Query: 195 THIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQ 253
THIPTG+ V C +E+SQ NK +A+ L+A+LL A +++ +E+ R V + ++
Sbjct: 245 THIPTGIVVTCQDEKSQHKNKERAMKILRARLLDKARQEQEAELASARKSQVGTGDRSER 304
Query: 254 IRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIXXXXXXXXXXXXXXXDAN 307
IR Y F P V D R G + +V++G+L+ I D N
Sbjct: 305 IRTYNF-PQNRVTDHRIGLTLHRLDAVLEGDLDEIIDALITTDQAERLKQVDGN 357
>POMBASE|SPAC2F7.17 [details] [associations]
symbol:SPAC2F7.17 "mitochondrial peptide chain release
factor (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=NAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 PomBase:SPAC2F7.17 GO:GO:0005739
EMBL:CU329670 Gene3D:3.30.160.20 GO:GO:0032543 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
PIR:S58161 RefSeq:NP_592987.1 ProteinModelPortal:Q09691
STRING:Q09691 EnsemblFungi:SPAC2F7.17.1 GeneID:2541478
KEGG:spo:SPAC2F7.17 OMA:QEANSIL OrthoDB:EOG4JWZP5 NextBio:20802577
Uniprot:Q09691
Length = 396
Score = 206 (77.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 50/146 (34%), Positives = 80/146 (54%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS + V+P + + +++I R+ G GGQ+VN+ E+AVR+THIPTG+TV
Sbjct: 232 TSTASVIVLPQVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRLTHIPTGITVS 291
Query: 205 CTEERSQLANKIKALSRLKAKLLVI--AEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPY 262
+ RSQ NK KA L ++L + A+E A +K+ + ++ +++R Y F+
Sbjct: 292 MQDSRSQHQNKEKAFLVLNSRLAALNAAKENEAERLKR-KNQVTSSDRSEKLRTYNFNQN 350
Query: 263 KLVKDVRTGHETSDIVSVMDGELEPF 288
+ V D R G D+ + M GE E F
Sbjct: 351 R-VTDHRIGLSMHDLSTFMQGE-EKF 374
Score = 62 (26.9 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 43 DSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAA 102
D S N + + + L V N + FK+ + + ++ +K E +S DA + A
Sbjct: 58 DQSAMTNDTDLAKRIARLRRVH---NAYSKFKS-LSEQISDLKQMEAQES-DAEVKMMAV 112
Query: 103 SIIKELN----KALDQFELTQLLSGPYDKEGAVISITAGAGGTDA 143
+ I E++ K+++ E T L A+I I G GGT+A
Sbjct: 113 TEINEISNKIPKSIEDLENTLLPQADSYALPALIEIRPGVGGTEA 157
>FB|FBgn0032486 [details] [associations]
symbol:CG5705 species:7227 "Drosophila melanogaster"
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=ISS]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE014134 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
KO:K02835 GeneTree:ENSGT00390000011879 HSSP:P07012 EMBL:AY061245
RefSeq:NP_609617.1 UniGene:Dm.3674 SMR:Q9VK20 IntAct:Q9VK20
MINT:MINT-821247 STRING:Q9VK20 EnsemblMetazoa:FBtr0080444
GeneID:34720 KEGG:dme:Dmel_CG5705 UCSC:CG5705-RA
FlyBase:FBgn0032486 InParanoid:Q9VK20 OMA:AEKDEDM OrthoDB:EOG46WWQX
GenomeRNAi:34720 NextBio:789875 Uniprot:Q9VK20
Length = 392
Score = 204 (76.9 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 49/128 (38%), Positives = 73/128 (57%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS + V+P P + + V I E+DL+I RA G GGQ+VN ++AVRI H+PTG+ V
Sbjct: 218 TSTASITVIPR-PAD-IQVHIAEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVE 275
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKL 264
ERSQL N+ A+ RL+++L+ +Q+ ++ + KA+ G RN Y
Sbjct: 276 AQSERSQLKNRELAMKRLRSRLV----QQQLESVEASKMATKKAQQGSLNRNEKIRTYNF 331
Query: 265 VKDVRTGH 272
V+D T H
Sbjct: 332 VQDRITDH 339
Score = 62 (26.9 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 49 NRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTE-EMDSTDAGLLEEAASIIKE 107
N A ++ L ++ ++ L + ++ +T K E E D L+ E + +
Sbjct: 48 NAAGNSKSYARLAQLEGVVSALEQRRV-LERHITSAKDMEAEKDEDMRELMREENEVYVD 106
Query: 108 LNKALDQFELTQLLSGPYDKE--GAVISITAGAGGTDA 143
L DQ L +LL+ D+E + + AGAGG +A
Sbjct: 107 LLGKQDQALLQELLTLSDDEEYPALIFGLNAGAGGQEA 144
>UNIPROTKB|O75570 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=TAS] [GO:0006449 "regulation of
translational termination" evidence=TAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0006449 GO:GO:0016149 EMBL:AL354696
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
CTD:9617 OrthoDB:EOG48KRBQ EMBL:AF072934 EMBL:BC042196
IPI:IPI00026157 RefSeq:NP_004285.2 UniGene:Hs.382176
ProteinModelPortal:O75570 SMR:O75570 IntAct:O75570 STRING:O75570
PhosphoSite:O75570 PRIDE:O75570 Ensembl:ENST00000379477
Ensembl:ENST00000379480 Ensembl:ENST00000452359 GeneID:9617
KEGG:hsa:9617 UCSC:uc001uxx.3 GeneCards:GC13M041790 HGNC:HGNC:7469
HPA:HPA043316 MIM:604601 neXtProt:NX_O75570 PharmGKB:PA31273
InParanoid:O75570 PhylomeDB:O75570 GenomeRNAi:9617 NextBio:36079
ArrayExpress:O75570 Bgee:O75570 CleanEx:HS_MTRF1
Genevestigator:O75570 GermOnline:ENSG00000120662 Uniprot:O75570
Length = 445
Score = 210 (79.0 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 52/143 (36%), Positives = 83/143 (58%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP+ + +DV++ +DL I RA G GGQ+VNK ++AVR+ HIPTG+
Sbjct: 273 QRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLV 332
Query: 203 VRCTEERSQLANKIKALSRLKAKLL--VIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFH 260
V C +ERSQ+ NK A L+A+L +I +++R + + +A+ ++IR Y F
Sbjct: 333 VECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQ-SERIRTYNFT 391
Query: 261 PYKLVKDVRTGHETSDIVSVMDG 283
+ V D R +E DI + G
Sbjct: 392 QDR-VSDHRIAYEVRDIKEFLCG 413
Score = 57 (25.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 52 EAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKA 111
E QET QA+ +++ L K D+ K +E+ LEE +I +++N
Sbjct: 122 EIQETEQAIEELESMCKSLN----KQDE-----KQLQEL------ALEERQTIDQKINML 166
Query: 112 LDQFELTQLLSGPYDKEGAVISITAG--AGGTDAQ 144
++ + + YDK ++ +TAG GG Q
Sbjct: 167 YNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQ 201
>UNIPROTKB|B4DG01 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
EMBL:AL354696 HOGENOM:HOG000074815 HOVERGEN:HBG017071 OMA:VWLFRHP
UniGene:Hs.382176 HGNC:HGNC:7469 EMBL:AK294343 IPI:IPI00909024
SMR:B4DG01 STRING:B4DG01 Ensembl:ENST00000430347 UCSC:uc010tff.2
Uniprot:B4DG01
Length = 468
Score = 208 (78.3 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 51/137 (37%), Positives = 81/137 (59%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP+ + +DV++ +DL I RA G GGQ+VNK ++AVR+ HIPTG+
Sbjct: 286 QRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLV 345
Query: 203 VRCTEERSQLANKIKALSRLKAKLL--VIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFH 260
V C +ERSQ+ NK A L+A+L +I +++R + + +A+ ++IR Y F
Sbjct: 346 VECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQ-SERIRTYNFT 404
Query: 261 PYKLVKDVRTGHETSDI 277
+ V D R +E DI
Sbjct: 405 QDR-VSDHRIAYEVRDI 420
Score = 57 (25.1 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 52 EAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKA 111
E QET QA+ +++ L K D+ K +E+ LEE +I +++N
Sbjct: 135 EIQETEQAIEELESMCKSLN----KQDE-----KQLQEL------ALEERQTIDQKINML 179
Query: 112 LDQFELTQLLSGPYDKEGAVISITAG--AGGTDAQ 144
++ + + YDK ++ +TAG GG Q
Sbjct: 180 YNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQ 214
>TIGR_CMR|APH_0420 [details] [associations]
symbol:APH_0420 "peptide chain release factor 1"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 RefSeq:YP_505023.1
ProteinModelPortal:Q2GKS8 STRING:Q2GKS8 GeneID:3929978
KEGG:aph:APH_0420 PATRIC:20949454 OMA:EMPEINP ProtClustDB:PRK00591
BioCyc:APHA212042:GHPM-447-MONOMER TIGRFAMs:TIGR00019
Uniprot:Q2GKS8
Length = 359
Score = 232 (86.7 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 56/145 (38%), Positives = 89/145 (61%)
Query: 148 SGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 206
+ A + +LPE E +D++I E+DL I R+ G GGQ+VN ++AVRITHIPTG+ V
Sbjct: 199 TSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQ 258
Query: 207 EERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLV 265
+E+SQ NK KAL L+A+L + +++R EI ++R + + ++IR Y F ++
Sbjct: 259 DEKSQHKNKSKALKVLRARLYNLEKQKREEEISKMRKSQIGSGDRSERIRTYNFLQSRIT 318
Query: 266 KDVRTGHETSDIVSVM-DGELEPFI 289
D R + + VM +G+L+ FI
Sbjct: 319 -DHRINLTSYRLDYVMKEGDLDEFI 342
>MGI|MGI:2384815 [details] [associations]
symbol:Mtrf1 "mitochondrial translational release factor 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006415 "translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
MGI:MGI:2384815 GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP OrthoDB:EOG48KRBQ
EMBL:AK043981 EMBL:BC028898 IPI:IPI00169629 RefSeq:NP_666072.3
UniGene:Mm.35306 ProteinModelPortal:Q8K126 SMR:Q8K126 STRING:Q8K126
PhosphoSite:Q8K126 PRIDE:Q8K126 Ensembl:ENSMUST00000022600
GeneID:211253 KEGG:mmu:211253 UCSC:uc007usw.1 InParanoid:Q8K126
NextBio:373184 Bgee:Q8K126 CleanEx:MM_MTRF1 Genevestigator:Q8K126
GermOnline:ENSMUSG00000022022 Uniprot:Q8K126
Length = 446
Score = 211 (79.3 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 53/143 (37%), Positives = 79/143 (55%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP+ + +DV++ +DL + RA G GGQ+VN ++AVR+ HIPTG+
Sbjct: 274 QRIHTGTMSVIVLPQPDEVDVKVDPKDLRVDTFRARGAGGQHVNTTDSAVRLVHIPTGLV 333
Query: 203 VRCTEERSQLANKIKALSRLKAKLLV-IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHP 261
V C +ERSQL NK AL L+A+L I E+ R + + ++IR Y F
Sbjct: 334 VECQQERSQLKNKEIALRVLRARLYQQIIEKDRCQQQNARKLQVGTRAQSERIRTYNFTQ 393
Query: 262 YKLVKDVRTGHETSDIVSVMDGE 284
+ V D R +E DI + GE
Sbjct: 394 DR-VTDHRIAYEVRDIKEFLRGE 415
Score = 46 (21.3 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 98 LEEAASIIKELNKALDQFELTQLLS 122
+EE S+ K LNK D+ +L +L+S
Sbjct: 131 IEELESLCKSLNKQ-DEKQLQELVS 154
>UNIPROTKB|Q3MHI7 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815
HOVERGEN:HBG017071 KO:K02835 GeneTree:ENSGT00390000011879
EMBL:BC105224 IPI:IPI00698094 RefSeq:NP_001030185.1
UniGene:Bt.37767 HSSP:P0A7I0 ProteinModelPortal:Q3MHI7
STRING:Q3MHI7 PRIDE:Q3MHI7 Ensembl:ENSBTAT00000016261 GeneID:504754
KEGG:bta:504754 CTD:9617 InParanoid:Q3MHI7 OMA:VWLFRHP
OrthoDB:EOG48KRBQ NextBio:20866812 Uniprot:Q3MHI7
Length = 447
Score = 201 (75.8 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 55/147 (37%), Positives = 85/147 (57%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP + +DV++ +DL I RA G GGQ+VN ++AVR+ HIPTG+
Sbjct: 275 QRIHTGTMSVIVLPHPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRLVHIPTGLV 334
Query: 203 VRCTEERSQLANKIKALSRLKAKLL--VIAEE---QRASEIKQIRGDAVKAEWGQQIRNY 257
V C +ERSQ+ NK AL L+A+L +I ++ QR++ Q+ G ++E +IR Y
Sbjct: 335 VECQQERSQIKNKEIALRVLRARLYQQIIEKDKCQQRSARKLQV-GTRAQSE---RIRTY 390
Query: 258 VFHPYKLVKDVRTGHETSDIVSVMDGE 284
F + V D R +E +I + GE
Sbjct: 391 NFTQDR-VTDHRIAYEVRNIKEFLCGE 416
Score = 56 (24.8 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 98 LEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAG--AGGTDAQ 144
LEE +I +++N + + L YDK ++ +T+G GG Q
Sbjct: 155 LEERQTIAQKINMLYSELFQSLLPKEKYDKNDVILEVTSGRTTGGDICQ 203
Score = 40 (19.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 98 LEEAASIIKELNKALDQFELTQL 120
+EE S+ K LNK D+ +L +L
Sbjct: 132 IEELESMCKSLNKQ-DEKQLQEL 153
>UNIPROTKB|F1MCM1 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 IPI:IPI00714066 UniGene:Bt.20306
GeneTree:ENSGT00390000011879 OMA:VEIHAND EMBL:DAAA02027199
Ensembl:ENSBTAT00000012219 Uniprot:F1MCM1
Length = 380
Score = 214 (80.4 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 50/132 (37%), Positives = 75/132 (56%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +++ I +DL I RA G GGQ+VN ++AVRI H+PTG+ C +ERSQL
Sbjct: 223 ILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIVSECQQERSQLK 282
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
NK A+ +L+AKL + E+ S+ R + + ++IR Y F P V D R
Sbjct: 283 NKEMAMKKLRAKLYSLQLEEETSKRYNARKIQIGTKGRSEKIRTYNF-PQNRVTDHRINK 341
Query: 273 ETSDIVSVMDGE 284
D+ + M GE
Sbjct: 342 SLHDLETFMQGE 353
Score = 37 (18.1 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 48 DNRAEAQETLQALTDVKDKINLLTDFK-TKMDDAVT-----IVKL---TEEMDSTDAGLL 98
D E QET L D + + L + + T + + I+ L +EE D D +L
Sbjct: 73 DKEQELQETQHLLHDENEDLRKLAENEITSCEKEIAQLKHQIILLLVPSEETDKNDL-IL 131
Query: 99 EEAASI 104
E A +
Sbjct: 132 EVTAGV 137
>UNIPROTKB|Q2KI15 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 EMBL:BC112806 IPI:IPI00714066 RefSeq:NP_001039843.1
UniGene:Bt.20306 ProteinModelPortal:Q2KI15 STRING:Q2KI15
PRIDE:Q2KI15 GeneID:534354 KEGG:bta:534354 CTD:54516 eggNOG:COG0216
HOGENOM:HOG000074815 HOVERGEN:HBG017071 InParanoid:Q2KI15 KO:K02835
OrthoDB:EOG49W2G0 NextBio:20876372 Uniprot:Q2KI15
Length = 380
Score = 214 (80.4 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 50/132 (37%), Positives = 75/132 (56%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +++ I +DL I RA G GGQ+VN ++AVRI H+PTG+ C +ERSQL
Sbjct: 223 ILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIVSECQQERSQLK 282
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
NK A+ +L+AKL + E+ S+ R + + ++IR Y F P V D R
Sbjct: 283 NKEMAMKKLRAKLYSLQLEEETSKRYNARKIQIGTKGRSEKIRTYNF-PQNRVTDHRINK 341
Query: 273 ETSDIVSVMDGE 284
D+ + M GE
Sbjct: 342 SLHDLETFMQGE 353
Score = 37 (18.1 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 48 DNRAEAQETLQALTDVKDKINLLTDFK-TKMDDAVT-----IVKL---TEEMDSTDAGLL 98
D E QET L D + + L + + T + + I+ L +EE D D +L
Sbjct: 73 DKEQELQETQHLLHDENEDLRKLAENEITSCEKEIAQLKHQIILLLVPSEETDKNDL-IL 131
Query: 99 EEAASI 104
E A +
Sbjct: 132 EVTAGV 137
>UNIPROTKB|F1RJ87 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP EMBL:CU062515
RefSeq:NP_001230509.1 UniGene:Ssc.41357 Ensembl:ENSSSCT00000010343
GeneID:100155739 KEGG:ssc:100155739 Uniprot:F1RJ87
Length = 446
Score = 203 (76.5 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 55/146 (37%), Positives = 84/146 (57%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP+ + +DV++ +DL I RA G GGQ+VN ++AVR+ H+PTG+
Sbjct: 274 QRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRLVHVPTGLV 333
Query: 203 VRCTEERSQLANKIKALSRLKAKLL--VIAEE--QRASEIKQIRGDAVKAEWGQQIRNYV 258
V C +ERSQ+ NK AL L+A+L +I +E Q+ S K G ++E +IR Y
Sbjct: 334 VECQQERSQIKNKEIALRVLRARLYQQIIEKEKCQQQSARKLQVGTRAQSE---RIRTYN 390
Query: 259 FHPYKLVKDVRTGHETSDIVSVMDGE 284
F + V D R +E +I + GE
Sbjct: 391 FTQDR-VTDHRIAYEVRNIKEFLCGE 415
Score = 52 (23.4 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 98 LEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAG--AGGTDAQ 144
LEE +I +++N + + + YDK ++ +T+G GG Q
Sbjct: 154 LEEKRTIAQKINMLYHELFQSLVPKEKYDKNDVILEVTSGRTTGGDICQ 202
Score = 40 (19.1 bits), Expect = 9.7e-18, Sum P(2) = 9.7e-18
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 98 LEEAASIIKELNKALDQFELTQL 120
+EE S+ K LNK D+ +L +L
Sbjct: 131 IEELESMCKSLNKQ-DEKQLQEL 152
>TIGR_CMR|NSE_0406 [details] [associations]
symbol:NSE_0406 "peptide chain release factor 1"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_506293.1 ProteinModelPortal:Q2GE03 SMR:Q2GE03
STRING:Q2GE03 GeneID:3931950 KEGG:nse:NSE_0406 PATRIC:22680869
ProtClustDB:CLSK2527657 BioCyc:NSEN222891:GHFU-429-MONOMER
Uniprot:Q2GE03
Length = 367
Score = 227 (85.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 67/190 (35%), Positives = 99/190 (52%)
Query: 106 KELNKAL---DQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPE-ESM 161
KE N ++ D F + SG + + + T AG T+ + +LPE E +
Sbjct: 162 KEANASISGSDVFAKLKFESGVHRVQR--VPETESAGRIHTSTA-----TVAVLPEPEDV 214
Query: 162 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSR 221
DV+I ++DL I R+ G GGQ+VN ++AVRITHIPTG+ V +E+SQ N+ KA+
Sbjct: 215 DVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQDEKSQHKNRAKAMKV 274
Query: 222 LKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGHETSDI-VS 279
L+ +L I + EI +R + E ++ R Y F P + D R T I +
Sbjct: 275 LRVRLYEIERNKVQQEISSMRKSQIGSGERSEKTRTYNF-PQGRITDHRINLTTYRINET 333
Query: 280 VMDGELEPFI 289
V +GELEP I
Sbjct: 334 VKEGELEPII 343
>SGD|S000003111 [details] [associations]
symbol:MRF1 "Mitochondrial translation release factor"
species:4932 "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA;IMP] [GO:0070126 "mitochondrial translational
termination" evidence=IGI;IMP] [GO:0006415 "translational
termination" evidence=IEA;IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=IMP]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 SGD:S000003111 InterPro:IPR014720
GO:GO:0005739 EMBL:BK006941 Gene3D:3.30.160.20 GO:GO:0003747
EMBL:X99960 GO:GO:0016149 RefSeq:NP_011376.3 GeneID:852738
KEGG:sce:YGL139W EMBL:X60381 GO:GO:0070126 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 GeneTree:ENSGT00390000011879
OrthoDB:EOG4JWZP5 EMBL:Z72665 PIR:S28602 RefSeq:NP_011372.3
ProteinModelPortal:P30775 SMR:P30775 DIP:DIP-2626N IntAct:P30775
MINT:MINT-427494 STRING:P30775 PaxDb:P30775 EnsemblFungi:YGL143C
GeneID:852734 KEGG:sce:YGL143C CYGD:YGL143c OMA:PPHPFAD
NextBio:972135 Genevestigator:P30775 GermOnline:YGL143C
Uniprot:P30775
Length = 413
Score = 198 (74.8 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 51/147 (34%), Positives = 75/147 (51%)
Query: 145 TSFSGAEVMPLLPEESM-DVQIPEE-----DLEISFSRAGGKGGQNVNKVETAVRITHIP 198
TS + V+P + +ES + E ++ + RA GKGGQ+VN ++AVR+THIP
Sbjct: 243 TSTAAVVVLPQIGDESAKSIDAYERTFKPGEIRVDIMRASGKGGQHVNTTDSAVRLTHIP 302
Query: 199 TGVTVRCTEERSQLANKIKALSRLKAKLLVIAE-EQRASEIKQIRGDAVKAEWGQQIRNY 257
+G+ V +ERSQ NK KA + L+A+L E+ E K + +IR Y
Sbjct: 303 SGIVVSMQDERSQHKNKAKAFTILRARLAEKERLEKEEKERKARKSQVSSTNRSDKIRTY 362
Query: 258 VFHPYKLVKDVRTGHETSDIVSVMDGE 284
F P + D R G D+ V+ GE
Sbjct: 363 NF-PQNRITDHRCGFTLLDLPGVLSGE 388
Score = 58 (25.5 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 66 KINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELT------Q 119
K++ LTD + + + +K +EM +D L EA EL + Q+E T +
Sbjct: 87 KLSALTDTFIEYKEKLNELKSLQEMIVSDPSLRAEAEQEYAEL---VPQYETTSSRLVNK 143
Query: 120 LLSG-PYDKEGAVISITAGAGGTDA 143
LL P+ + +++ + G GG +A
Sbjct: 144 LLPPHPFADKPSLLELRPGVGGIEA 168
>UNIPROTKB|E2RAT2 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP EMBL:AAEX03013173
RefSeq:XP_848713.1 ProteinModelPortal:E2RAT2
Ensembl:ENSCAFT00000007724 GeneID:485465 KEGG:cfa:485465
NextBio:20859471 Uniprot:E2RAT2
Length = 444
Score = 199 (75.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 51/143 (35%), Positives = 78/143 (54%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP+ + +DV++ +DL I RA G GGQ+VN ++AVR+ HIPTG+
Sbjct: 272 QRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRLVHIPTGLV 331
Query: 203 VRCTEERSQLANKIKALSRLKAKLLV-IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHP 261
V C +ERSQ+ NK AL L+A+L I E+ + + + ++IR Y F
Sbjct: 332 VECQQERSQIKNKEIALRVLRARLYQQIIEKDKCQQQSTRKLQVGTRAQSERIRTYNFTQ 391
Query: 262 YKLVKDVRTGHETSDIVSVMDGE 284
+ V D R +E I + GE
Sbjct: 392 DR-VTDHRIAYEVRGIKEFLCGE 413
Score = 55 (24.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 49 NRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKEL 108
NR A+ L L + +I ++D + +E + L EE +I +++
Sbjct: 106 NRRHAE--LAPLAAIYQEIQEAEQAIEELDSMCKSLSKQDEKQLQELAL-EERQTIAEKI 162
Query: 109 NKALDQFELTQLLSGPYDKEGAVISITAG--AGGTDAQ 144
N + + + YDK +I +T+G GG Q
Sbjct: 163 NVLYSELFQSLVPKEKYDKNDVIIEVTSGRTTGGDICQ 200
>TIGR_CMR|SO_3833 [details] [associations]
symbol:SO_3833 "peptide chain release factor 1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:GEAGGYK ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:NP_719366.1 ProteinModelPortal:Q8EAR3
SMR:Q8EAR3 GeneID:1171478 KEGG:son:SO_3833 PATRIC:23527352
Uniprot:Q8EAR3
Length = 363
Score = 218 (81.8 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 51/146 (34%), Positives = 83/146 (56%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS VM +PE + I DL++ R+ G GGQ+VNK ++A+RITHIPTG+ V
Sbjct: 200 TSAVTVVVMHEVPEAEA-ISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVE 258
Query: 205 CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EWGQQIRNYVFHPYK 263
C ++RSQ N+ +A+S L A++ + +E+R S + R V + + +++R Y F P
Sbjct: 259 CQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRSLVASGDRSERVRTYNF-PQG 317
Query: 264 LVKDVRTGHETSDIVSVMDGELEPFI 289
V + R + VM+G+L+ +
Sbjct: 318 RVSEHRINLTLYRLNEVMEGDLDAIL 343
>UNIPROTKB|F6V8L3 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0016149 GeneTree:ENSGT00390000011879
Ensembl:ENSCAFT00000000841 EMBL:AAEX03000279 OMA:DCTISIS
Uniprot:F6V8L3
Length = 238
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 51/132 (38%), Positives = 75/132 (56%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +++ I +DL I RA G GGQ+VN ++AVRI H+PTGV C +ERSQL
Sbjct: 81 ILPQPTEINLVINPKDLRIHTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLK 140
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
N+ A+ +L+AKL + E+ S+ R V + ++IR Y F P V D R
Sbjct: 141 NREMAMKKLRAKLYSMYLEEETSKRYSARKIQVGTKGRSEKIRTYNF-PQNRVTDHRINK 199
Query: 273 ETSDIVSVMDGE 284
D+ + M GE
Sbjct: 200 SLHDLETFMQGE 211
>UNIPROTKB|F1NW58 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149 OMA:YSMKLEE
GeneTree:ENSGT00390000011879 EMBL:AADN02025387 EMBL:AADN02025388
IPI:IPI00593690 Ensembl:ENSGALT00000022140 Uniprot:F1NW58
Length = 367
Score = 211 (79.3 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + M+++I +DL I RA G GGQ+VN ++AVRI HIPTGVT C +ERSQ+
Sbjct: 209 ILPQPTEMELKINPKDLRIETKRASGAGGQHVNTTDSAVRIVHIPTGVTSECQQERSQIR 268
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHE 273
NK KA+ L AKL I E+ E K+ R A K + G + R+ Y +D T H
Sbjct: 269 NKEKAMQMLCAKLYNIKLEE---ENKK-RNSARKIQIGTKGRSEKIRTYNFPQDRITDHR 324
Query: 274 TS 275
S
Sbjct: 325 IS 326
>UNIPROTKB|F1S7X5 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
OMA:GEAGGYK EMBL:CU633523 Ensembl:ENSSSCT00000004505 Uniprot:F1S7X5
Length = 380
Score = 210 (79.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 51/132 (38%), Positives = 75/132 (56%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +++ I +DL I RA G GGQ+VN ++AVRI H+PTGV C +ERSQL
Sbjct: 223 ILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLK 282
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
N+ A+ +L+AKL + E+ S+ R V + ++IR Y F P V D R
Sbjct: 283 NREMAMKKLRAKLYSLHLEEETSKRYNARKVQVGTKGRSEKIRTYNF-PQNRVTDHRINK 341
Query: 273 ETSDIVSVMDGE 284
D+ + M GE
Sbjct: 342 SLYDLGTFMQGE 353
>UNIPROTKB|E2QTM1 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
Ensembl:ENSCAFT00000000841 Uniprot:E2QTM1
Length = 381
Score = 210 (79.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 51/132 (38%), Positives = 75/132 (56%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +++ I +DL I RA G GGQ+VN ++AVRI H+PTGV C +ERSQL
Sbjct: 224 ILPQPTEINLVINPKDLRIHTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLK 283
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
N+ A+ +L+AKL + E+ S+ R V + ++IR Y F P V D R
Sbjct: 284 NREMAMKKLRAKLYSMYLEEETSKRYSARKIQVGTKGRSEKIRTYNF-PQNRVTDHRINK 342
Query: 273 ETSDIVSVMDGE 284
D+ + M GE
Sbjct: 343 SLHDLETFMQGE 354
>ZFIN|ZDB-GENE-030131-8198 [details] [associations]
symbol:mtrf1l "mitochondrial translational release
factor 1-like" species:7955 "Danio rerio" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 ZFIN:ZDB-GENE-030131-8198 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
EMBL:CU651596 IPI:IPI00802409 Ensembl:ENSDART00000084094
Uniprot:F1QA94
Length = 339
Score = 207 (77.9 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 58/158 (36%), Positives = 79/158 (50%)
Query: 135 TAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRI 194
T G T TS ++P E S + P+ DL+I RA G GGQ+VN ++AVRI
Sbjct: 167 TESKGRT--HTSTMTVAILPQPTEISFTIN-PK-DLKIETKRASGAGGQHVNTTDSAVRI 222
Query: 195 THIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQ 253
TH+PTG C +ERSQ+ NK A+ L+AKL E+ S Q R + ++
Sbjct: 223 THLPTGTVAECQQERSQIKNKDTAMKLLRAKLYSARLEEETSRRYQARKLQIGTRGRSEK 282
Query: 254 IRNYVFHPYKLVKDVRTGHETSDIVSVMDGE--LEPFI 289
IR Y F ++ D R G D+ + GE LE I
Sbjct: 283 IRTYNFQQDRIT-DHRIGKTVHDVHGFLQGEELLEEMI 319
>UNIPROTKB|Q9UGC7 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9606 "Homo sapiens" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005739 EMBL:CH471051 Gene3D:3.30.160.20
GO:GO:0016149 EMBL:AL080276 CTD:54516 eggNOG:COG0216
HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0 EMBL:AK027684
EMBL:AK095240 EMBL:AK290662 EMBL:BC011873 EMBL:BC014428
EMBL:BC105973 IPI:IPI00295737 IPI:IPI00477207 IPI:IPI00513970
IPI:IPI00890825 RefSeq:NP_001107656.1 RefSeq:NP_061914.3
UniGene:Hs.225836 HSSP:Q9X183 ProteinModelPortal:Q9UGC7 SMR:Q9UGC7
STRING:Q9UGC7 PhosphoSite:Q9UGC7 DMDM:74753314 PRIDE:Q9UGC7
DNASU:54516 Ensembl:ENST00000367230 Ensembl:ENST00000367231
Ensembl:ENST00000367233 Ensembl:ENST00000414771 GeneID:54516
KEGG:hsa:54516 UCSC:uc003qpi.4 UCSC:uc003qpk.4 UCSC:uc003qpl.4
GeneCards:GC06M153308 H-InvDB:HIX0006308 HGNC:HGNC:21051
HPA:HPA036367 MIM:613542 neXtProt:NX_Q9UGC7 PharmGKB:PA134870441
InParanoid:Q9UGC7 OMA:YSMKLEE PhylomeDB:Q9UGC7 GenomeRNAi:54516
NextBio:56904 ArrayExpress:Q9UGC7 Bgee:Q9UGC7 CleanEx:HS_MTRF1L
Genevestigator:Q9UGC7 Uniprot:Q9UGC7
Length = 380
Score = 209 (78.6 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 49/132 (37%), Positives = 78/132 (59%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +++ I +DL I RA G GGQ+VN ++AVRI H+PTGV C +ERSQL
Sbjct: 223 ILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLK 282
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
NK A+++L+AKL + E+ ++ + R + ++ ++IR Y F P V D R
Sbjct: 283 NKELAMTKLRAKLYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNF-PQNRVTDHRINK 341
Query: 273 ETSDIVSVMDGE 284
D+ + M G+
Sbjct: 342 TLHDLETFMQGD 353
>CGD|CAL0003702 [details] [associations]
symbol:orf19.1303 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=IEA] [GO:0070126 "mitochondrial
translational termination" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 CGD:CAL0003702 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0016149 EMBL:AACQ01000138
HOGENOM:HOG000074815 KO:K02835 RefSeq:XP_709944.1
ProteinModelPortal:Q59TR5 STRING:Q59TR5 GeneID:3645356
KEGG:cal:CaO19.1303 Uniprot:Q59TR5
Length = 394
Score = 203 (76.5 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 70/227 (30%), Positives = 118/227 (51%)
Query: 65 DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGP 124
D +N+ +F ++M+ I+ +E +S+ G + EA I L +++ + SG
Sbjct: 169 DLLNMYMNFASEMNWKYKII--SEGKNSS--GFINEAILSIDTLGS----YDIMRHESGV 220
Query: 125 YDKEGAVISITAGAGGTDAQTSFSGAEVMPLLPE--ESM---DVQI--PEEDLEISFSRA 177
+ + + T G TS + V+P L E ES D ++ P E + I RA
Sbjct: 221 HRVQRIPETETKGR----VHTSTAAVVVLPKLSEGNESSLKDDERVFAPGE-VRIDTMRA 275
Query: 178 GGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASE 237
GGKGGQ+VN ++AVR+ HIPTG+ V +ERSQ NK KA + L+++L +E+ +
Sbjct: 276 GGKGGQHVNTTDSAVRLLHIPTGMIVIQQDERSQPLNKAKAFAILRSRLAQKEQEEEMLK 335
Query: 238 IKQIRGDAVKA-EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDG 283
K++R D V + + +I+ Y + + V D R + D+ V++G
Sbjct: 336 QKKLRTDQVSSTDRSDKIKTYNYKENR-VTDHRINYSMHDLEGVLEG 381
>RGD|1598312 [details] [associations]
symbol:Mtrf1l "mitochondrial translational release factor
1-like" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 RGD:1598312 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 CTD:54516 eggNOG:COG0216
HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0
HSSP:Q9X183 GeneTree:ENSGT00390000011879 OMA:GEAGGYK EMBL:BC097970
IPI:IPI00365406 RefSeq:NP_001020894.1 UniGene:Rn.205194
ProteinModelPortal:Q4V7E5 STRING:Q4V7E5 PRIDE:Q4V7E5
Ensembl:ENSRNOT00000025398 GeneID:361473 KEGG:rno:361473
UCSC:RGD:1598312 InParanoid:Q4V7E5 NextBio:676427
Genevestigator:Q4V7E5 Uniprot:Q4V7E5
Length = 373
Score = 201 (75.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 48/132 (36%), Positives = 74/132 (56%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + + + I +DL I RA G GGQ+VN ++AVRI H+PTG+ C +ERSQL
Sbjct: 216 ILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLK 275
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
N+ A+ +L+A+L + E+ ++ R V + ++IR Y F P V D R
Sbjct: 276 NRELAMKKLRARLYSMRLEEETAKRYSARKIQVGTKGRSEKIRTYNF-PQNRVTDHRINK 334
Query: 273 ETSDIVSVMDGE 284
D+ S M G+
Sbjct: 335 SLHDLESFMQGD 346
>MGI|MGI:1918830 [details] [associations]
symbol:Mtrf1l "mitochondrial translational release factor
1-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003747 "translation release
factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0006415 "translational termination"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 MGI:MGI:1918830 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 CTD:54516 eggNOG:COG0216 HOGENOM:HOG000074815
HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0 HSSP:Q9X183
EMBL:AK036424 EMBL:AK078897 IPI:IPI00222491 RefSeq:NP_780583.1
UniGene:Mm.55082 ProteinModelPortal:Q8BJU9 SMR:Q8BJU9 STRING:Q8BJU9
PhosphoSite:Q8BJU9 PRIDE:Q8BJU9 Ensembl:ENSMUST00000019908
GeneID:108853 KEGG:mmu:108853 UCSC:uc007egi.1
GeneTree:ENSGT00390000011879 InParanoid:Q8BJU9 OMA:GEAGGYK
NextBio:361387 Bgee:Q8BJU9 Genevestigator:Q8BJU9 Uniprot:Q8BJU9
Length = 373
Score = 200 (75.5 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 48/132 (36%), Positives = 74/132 (56%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + + + I +DL I RA G GGQ+VN ++AVRI H+PTG+ C +ERSQL
Sbjct: 216 ILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLK 275
Query: 214 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW-GQQIRNYVFHPYKLVKDVRTGH 272
N+ A+ +L+A+L + E+ ++ R V + ++IR Y F P V D R
Sbjct: 276 NRELAMKKLRARLYSMHLEEETAKRYNARKIQVGTKGRSEKIRTYNF-PQNRVTDHRINK 334
Query: 273 ETSDIVSVMDGE 284
D+ S M G+
Sbjct: 335 SLHDLESFMQGD 346
>ZFIN|ZDB-GENE-050220-8 [details] [associations]
symbol:zgc:113104 "zgc:113104" species:7955 "Danio
rerio" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 InterPro:IPR014720 ZFIN:ZDB-GENE-050220-8
GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149 HOGENOM:HOG000074815
KO:K02835 EMBL:BC090173 IPI:IPI00484442 RefSeq:NP_001012512.1
UniGene:Dr.77520 ProteinModelPortal:Q5EB09 GeneID:503530
KEGG:dre:503530 InParanoid:Q5EB09 NextBio:20866191 Uniprot:Q5EB09
Length = 235
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 49/143 (34%), Positives = 78/143 (54%)
Query: 144 QTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVT 202
Q +G + +LP+ E +D+ I +DL I R+ G GGQ+VN ++AVR+ H+PTG
Sbjct: 67 QRIHTGTMTVIVLPQMEEVDIDIAPKDLRIDTFRSRGAGGQHVNTTDSAVRLVHLPTGTV 126
Query: 203 VRCTEERSQLANKIKALSRLKAKL--LVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFH 260
C + RSQL N+ AL L+A+L ++ +++ + + +A+ ++IR Y F
Sbjct: 127 SECQQFRSQLKNRETALRVLRARLHQCMMGQQREQTHTARRLQVGTRAQ-SERIRTYNFT 185
Query: 261 PYKLVKDVRTGHETSDIVSVMDG 283
+ V D R G T DI M G
Sbjct: 186 QDR-VTDHRIGFVTRDIKEFMRG 207
>ASPGD|ASPL0000035902 [details] [associations]
symbol:AN3462 species:162425 "Emericella nidulans"
[GO:0070126 "mitochondrial translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:BN001306 GO:GO:0016149 HOGENOM:HOG000074815
OMA:QCQAGNA EnsemblFungi:CADANIAT00009571 Uniprot:C8VHA3
Length = 418
Score = 193 (73.0 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 44/130 (33%), Positives = 74/130 (56%)
Query: 158 EESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIK 217
+ + D I +++ RA G GGQ+VNK E+A+R+TH+PTG+ V + RSQ AN+ K
Sbjct: 258 DPNSDYYIDPQEVRTEKMRASGAGGQHVNKTESAIRLTHMPTGIVVSMQDSRSQHANRKK 317
Query: 218 ALSRLKAKLLVIAEEQRASEIKQIRGDAV----KAEWGQQIRNYVFHPYKLVKDVRTGHE 273
A L+AKL +E R E+ ++R A+ + G ++R Y + + D R+G
Sbjct: 318 AWQILRAKLAEARQEAREQELVELRRGAMGGIGRMGRGDKVRTYNYGQSRCT-DHRSGFT 376
Query: 274 TSDIVSVMDG 283
++ +V++G
Sbjct: 377 VHNLDNVLEG 386
Score = 41 (19.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 86 LTEEMDSTDAGL----LEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGT 141
+ E+ D T+A L +EE + +L D + + P+ ++ I GAGG
Sbjct: 97 MLEDPD-TEAELRSIAVEELQTTEAKLTAISDNLKRALVPRHPFADLSCLLEIRPGAGGD 155
Query: 142 DA 143
+A
Sbjct: 156 EA 157
>TIGR_CMR|SPO_2461 [details] [associations]
symbol:SPO_2461 "peptide chain release factor 1"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
HSSP:P0A7I0 ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_167678.1 ProteinModelPortal:Q5LQM7 GeneID:3194030
KEGG:sil:SPO2461 PATRIC:23378321 Uniprot:Q5LQM7
Length = 351
Score = 183 (69.5 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 48/144 (33%), Positives = 78/144 (54%)
Query: 148 SGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 206
+ A + +LPE + +D+QI D+ I R+ G GGQ+VN ++AVRITH+P+G+ V +
Sbjct: 193 TSAATVAVLPEAQDVDIQIDPGDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-S 251
Query: 207 EERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLV 265
E+SQ N+ A+ LK +L + ++ E R V + ++IR Y F P +
Sbjct: 252 SEKSQHRNREIAMQVLKTRLYDLERQRLDRERSASRSAQVGTGDRSERIRTYNF-PQGRM 310
Query: 266 KDVRTGHETSDIVSVMDGELEPFI 289
D R + +VM G+L+ I
Sbjct: 311 TDHRINLTLYKLDAVMQGDLDEVI 334
Score = 52 (23.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 28/103 (27%), Positives = 42/103 (40%)
Query: 48 DNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIK- 106
D A A+E L V ++I MD+A ++ D L EE ++K
Sbjct: 29 DIAALAKE-YSDLRPVVEQIAAWRQLCADMDEARAMLS-----DPDMKALAEEELPLLKA 82
Query: 107 ELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQTSFSG 149
L +A +L L D A++ I G GG +A F+G
Sbjct: 83 RLPEAEQALQLALLPKDAADARPAMLEIRPGTGGDEAAL-FAG 124
>TIGR_CMR|CJE_1784 [details] [associations]
symbol:CJE_1784 "peptide chain release factor 1"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_179756.1 ProteinModelPortal:Q5HSH9
SMR:Q5HSH9 STRING:Q5HSH9 GeneID:3232411 KEGG:cjr:CJE1784
PATRIC:20045378 BioCyc:CJEJ195099:GJC0-1814-MONOMER Uniprot:Q5HSH9
Length = 355
Score = 196 (74.1 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 48/145 (33%), Positives = 81/145 (55%)
Query: 148 SGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 206
+ A + ++PE + ++++I DL++ R+ G GGQ+VN ++AVRITHIPTG+ V
Sbjct: 195 TSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQ 254
Query: 207 EERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLV 265
+ +SQ NK A+ LKA+L + E +R ++ + R V + ++IR Y F P +
Sbjct: 255 DGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRSERIRTYNF-PQNRI 313
Query: 266 KDVRTGHETSDIVSVM-DGELEPFI 289
D R + ++M DG + I
Sbjct: 314 SDHRINLTLYRLDAIMQDGLFDEII 338
>UNIPROTKB|Q5TF45 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9606 "Homo sapiens" [GO:0003747 "translation
release factor activity" evidence=IEA] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003747 EMBL:AL080276 eggNOG:COG0216
HOGENOM:HOG000074815 UniGene:Hs.225836 HGNC:HGNC:21051
IPI:IPI00514520 SMR:Q5TF45 STRING:Q5TF45 Ensembl:ENST00000448966
Uniprot:Q5TF45
Length = 164
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 36/73 (49%), Positives = 52/73 (71%)
Query: 155 LLPEES-MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLA 213
+LP+ + +++ I +DL I RA G GGQ+VN ++AVRI H+PTGV C +ERSQL
Sbjct: 87 ILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLK 146
Query: 214 NKIKALSRLKAKL 226
NK A+++L+AKL
Sbjct: 147 NKELAMTKLRAKL 159
>WB|WBGene00020993 [details] [associations]
symbol:W03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0003747 "translation release factor activity" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
GeneTree:ENSGT00390000011879 EMBL:FO080652 PIR:T15102
RefSeq:NP_500737.1 ProteinModelPortal:O44568 SMR:O44568
STRING:O44568 PaxDb:O44568 EnsemblMetazoa:W03F8.3.1
EnsemblMetazoa:W03F8.3.2 GeneID:177294 KEGG:cel:CELE_W03F8.3
UCSC:W03F8.3 CTD:177294 WormBase:W03F8.3 InParanoid:O44568
OMA:QCQAGNA NextBio:896154 Uniprot:O44568
Length = 389
Score = 170 (64.9 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 54/129 (41%), Positives = 70/129 (54%)
Query: 145 TSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVR 204
TS + V+P PEE + V +P + ++I RA G GGQNVNK TAVR+TH TG+ V
Sbjct: 223 TSTASISVLPE-PEE-VSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRMTHKETGIAVH 280
Query: 205 CTEERSQLANKIKALSRLKAKLL---VIAE-EQRASEIKQIRGDAVKAEWGQQIRNYVFH 260
C +ER Q N A RL A L+ V A E+ S+ K G +AE +IR Y F
Sbjct: 281 CMDERFQHLNIQIAYKRLAAILMQKQVDAMLEKIVSKRKLQVGSKARAE---KIRTYNFQ 337
Query: 261 PYKLVKDVR 269
+ V D R
Sbjct: 338 -HDRVTDHR 345
Score = 47 (21.6 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 26/106 (24%), Positives = 45/106 (42%)
Query: 49 NRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIV---KLTEEMDSTDAGLLE-EAASI 104
N A E + + + ++D ++++ TI+ K TEEM L E + SI
Sbjct: 56 NATAAPEQISYWESISKQSAKVSDGRSELSQLRTIINDPKETEEMRK----LAEVDVESI 111
Query: 105 IKELNKALDQFELTQLLSGPYDK-EGAVISITAGAGGTDAQTSFSG 149
+ L L + + + D I ++ GAGG +A F+G
Sbjct: 112 EENLETELQELAVKIVPLNNLDVLSKCQIELSCGAGGQEAML-FTG 156
Score = 39 (18.8 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 24/115 (20%), Positives = 43/115 (37%)
Query: 6 NLRKDVEAASDRVEEIRASXXXXXXXXXXXXXXXXXXDSSFWDNRAEAQETLQALTDVKD 65
N K V+ DR+ + +A + D R+E + + D K+
Sbjct: 37 NGEKFVKTVVDRLAQCQAGNATAAPEQISYWESISKQSAKVSDGRSELSQLRTIINDPKE 96
Query: 66 KINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120
T+ K+ + V + + E +++ L+E A I LN LD Q+
Sbjct: 97 -----TEEMRKLAE-VDVESIEENLETE----LQELAVKIVPLNN-LDVLSKCQI 140
>UNIPROTKB|Q74EJ1 [details] [associations]
symbol:GSU0971 "Hydrolase, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_952025.1 ProteinModelPortal:Q74EJ1 GeneID:2687546
KEGG:gsu:GSU0971 PATRIC:22024716 OMA:QHRNKTE ProtClustDB:CLSK828124
BioCyc:GSUL243231:GH27-988-MONOMER Uniprot:Q74EJ1
Length = 107
Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 161 MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALS 220
M V I + D+++ + RA G GGQ+ N ++AVRI H+PTG+ V+ +E RSQ N+ KA+
Sbjct: 1 MTVDIRDADIKVEYYRASGPGGQHRNTTDSAVRIRHLPTGIVVQASESRSQAQNREKAME 60
Query: 221 RLKAKLLVIAEEQRASEIKQ 240
RL+ IA E+R + K+
Sbjct: 61 RLR-----IALEKRERKAKK 75
>TIGR_CMR|GSU_0971 [details] [associations]
symbol:GSU_0971 "peptidyl-tRNA hydrolase domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_952025.1 ProteinModelPortal:Q74EJ1 GeneID:2687546
KEGG:gsu:GSU0971 PATRIC:22024716 OMA:QHRNKTE ProtClustDB:CLSK828124
BioCyc:GSUL243231:GH27-988-MONOMER Uniprot:Q74EJ1
Length = 107
Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 161 MDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALS 220
M V I + D+++ + RA G GGQ+ N ++AVRI H+PTG+ V+ +E RSQ N+ KA+
Sbjct: 1 MTVDIRDADIKVEYYRASGPGGQHRNTTDSAVRIRHLPTGIVVQASESRSQAQNREKAME 60
Query: 221 RLKAKLLVIAEEQRASEIKQ 240
RL+ IA E+R + K+
Sbjct: 61 RLR-----IALEKRERKAKK 75
>GENEDB_PFALCIPARUM|PF14_0265 [details] [associations]
symbol:PF14_0265 "peptide chain release factor
1, putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE014187 GO:GO:0016149 KO:K02835
RefSeq:XP_001348439.1 ProteinModelPortal:Q8ILH8
EnsemblProtists:PF14_0265:mRNA GeneID:811847 KEGG:pfa:PF14_0265
EuPathDB:PlasmoDB:PF3D7_1428600 HOGENOM:HOG000281260
ProtClustDB:CLSZ2433411 Uniprot:Q8ILH8
Length = 304
Score = 169 (64.5 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 158 EESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIK 217
+E +I +DL+IS R+ GGQNVNK+E+ V I H PTG+ C EER+Q NK
Sbjct: 171 KEEPKYEINLKDLKISTFRSSKPGGQNVNKIESGVCILHKPTGIQTECQEERTQELNKKL 230
Query: 218 ALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNY-VFHPYKLVKDVRTGHETS 275
A+ RL K+ + +++ + ++ R +K + +IR Y F Y + D +
Sbjct: 231 AMKRLIQKIQHMESKEKENMVQHERAKLIKESNRSNRIRTYNFFRGY--ITD-HINKKKI 287
Query: 276 DIVSVMDGELE 286
D++ G+LE
Sbjct: 288 DLIYFEKGKLE 298
>UNIPROTKB|Q8ILH8 [details] [associations]
symbol:PF14_0265 "Peptide chain release factor 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AE014187 GO:GO:0016149 KO:K02835 RefSeq:XP_001348439.1
ProteinModelPortal:Q8ILH8 EnsemblProtists:PF14_0265:mRNA
GeneID:811847 KEGG:pfa:PF14_0265 EuPathDB:PlasmoDB:PF3D7_1428600
HOGENOM:HOG000281260 ProtClustDB:CLSZ2433411 Uniprot:Q8ILH8
Length = 304
Score = 169 (64.5 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 158 EESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIK 217
+E +I +DL+IS R+ GGQNVNK+E+ V I H PTG+ C EER+Q NK
Sbjct: 171 KEEPKYEINLKDLKISTFRSSKPGGQNVNKIESGVCILHKPTGIQTECQEERTQELNKKL 230
Query: 218 ALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNY-VFHPYKLVKDVRTGHETS 275
A+ RL K+ + +++ + ++ R +K + +IR Y F Y + D +
Sbjct: 231 AMKRLIQKIQHMESKEKENMVQHERAKLIKESNRSNRIRTYNFFRGY--ITD-HINKKKI 287
Query: 276 DIVSVMDGELE 286
D++ G+LE
Sbjct: 288 DLIYFEKGKLE 298
>UNIPROTKB|Q74FR0 [details] [associations]
symbol:GSU0546 "Peptidyl-tRNA hydrolase-related protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_951604.1 ProteinModelPortal:Q74FR0 GeneID:2685772
KEGG:gsu:GSU0546 PATRIC:22023849 OMA:TATCVQI ProtClustDB:CLSK827916
BioCyc:GSUL243231:GH27-530-MONOMER Uniprot:Q74FR0
Length = 126
Score = 151 (58.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/89 (35%), Positives = 53/89 (59%)
Query: 156 LPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANK 215
L ++ ++ + E DLE +F R+ G GGQ+VNK T V+I H PTG+ V+C ++RSQ N+
Sbjct: 16 LRDKMAELGVSEADLEETFVRSSGAGGQHVNKTATCVQIRHRPTGIEVKCMKDRSQSVNR 75
Query: 216 IKALSRLKAKL--LVIAEEQRASEIKQIR 242
A + ++ L E R ++++R
Sbjct: 76 FLARREILERIERLNKGESPRDVRVEKLR 104
>TIGR_CMR|GSU_0546 [details] [associations]
symbol:GSU_0546 "peptidyl-tRNA hydrolase domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_951604.1 ProteinModelPortal:Q74FR0 GeneID:2685772
KEGG:gsu:GSU0546 PATRIC:22023849 OMA:TATCVQI ProtClustDB:CLSK827916
BioCyc:GSUL243231:GH27-530-MONOMER Uniprot:Q74FR0
Length = 126
Score = 151 (58.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/89 (35%), Positives = 53/89 (59%)
Query: 156 LPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANK 215
L ++ ++ + E DLE +F R+ G GGQ+VNK T V+I H PTG+ V+C ++RSQ N+
Sbjct: 16 LRDKMAELGVSEADLEETFVRSSGAGGQHVNKTATCVQIRHRPTGIEVKCMKDRSQSVNR 75
Query: 216 IKALSRLKAKL--LVIAEEQRASEIKQIR 242
A + ++ L E R ++++R
Sbjct: 76 FLARREILERIERLNKGESPRDVRVEKLR 104
>CGD|CAL0005347 [details] [associations]
symbol:orf19.5488 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 CGD:CAL0005347 Gene3D:3.30.160.20 GO:GO:0005622
eggNOG:COG1186 GO:GO:0003747 HOGENOM:HOG000217812 EMBL:AACQ01000196
EMBL:AACQ01000195 RefSeq:XP_711480.1 RefSeq:XP_711504.1
ProteinModelPortal:Q59P48 STRING:Q59P48 GeneID:3646889
GeneID:3646913 KEGG:cal:CaO19.12943 KEGG:cal:CaO19.5488
Uniprot:Q59P48
Length = 171
Score = 141 (54.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 165 IPEEDLEISFSRAG-GKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLK 223
I EED+E F G G GGQ +NK + V++THIPTG+ V C RSQ N+ A +L
Sbjct: 35 IKEEDIEEKFLHGGRGPGGQKINKTNSKVQLTHIPTGMVVSCQATRSQEQNRAIAREKLA 94
Query: 224 AKL 226
KL
Sbjct: 95 LKL 97
>FB|FBgn0050100 [details] [associations]
symbol:CG30100 species:7227 "Drosophila melanogaster"
[GO:0003747 "translation release factor activity" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720 EMBL:AE013599
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 EMBL:BT030757 RefSeq:NP_725560.1
UniGene:Dm.38081 SMR:A1ZAD7 STRING:A1ZAD7
EnsemblMetazoa:FBtr0087140 GeneID:246457 KEGG:dme:Dmel_CG30100
UCSC:CG30100-RA FlyBase:FBgn0050100 eggNOG:NOG295143
InParanoid:A1ZAD7 OMA:CHTHRLA OrthoDB:EOG4JH9Z9 NextBio:842552
Uniprot:A1ZAD7
Length = 146
Score = 130 (50.8 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 165 IPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKA 224
+ E D+E +F R G GGQ VNK V + H+PT +TV+C R N+++A L
Sbjct: 30 LQESDIEETFMRGSGPGGQAVNKTSNCVFLRHLPTNITVKCHTHRLASKNRVEARKLLLE 89
Query: 225 KLLVI--AEEQRASEIK 239
KL V E A+++K
Sbjct: 90 KLDVHLNGEHSIAAQVK 106
>POMBASE|SPBC1105.18c [details] [associations]
symbol:SPBC1105.18c "peptide release factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003747
"translation release factor activity" evidence=IEA] [GO:0004045
"aminoacyl-tRNA hydrolase activity" evidence=ISM] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006415 "translational
termination" evidence=IC] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
PomBase:SPBC1105.18c GO:GO:0005739 EMBL:CU329671 Gene3D:3.30.160.20
GO:GO:0032543 eggNOG:COG1186 GO:GO:0004045 GO:GO:0003747
GO:GO:0006415 OrthoDB:EOG4WHCWF RefSeq:NP_596474.2
ProteinModelPortal:Q9Y811 STRING:Q9Y811 EnsemblFungi:SPBC1105.18c.1
GeneID:2539814 KEGG:spo:SPBC1105.18c NextBio:20800963
Uniprot:Q9Y811
Length = 162
Score = 127 (49.8 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 164 QIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLK 223
++ EED+E +F G GGQ +NK ++ HIPTG+ VR + RS+ N+ A RL
Sbjct: 46 RLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPTGIIVRSQDTRSREQNRCIARKRLT 105
Query: 224 AKL---------LVIAEEQRASEIKQIRGDAVKAEWGQQI 254
K+ L+ + QR + K+ R K ++G +I
Sbjct: 106 EKVDEFKHGNDSLLARKVQRIVKKKKQREKKSKRKYGNKI 145
>UNIPROTKB|F1NSN8 [details] [associations]
symbol:F1NSN8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:AADN02034888 EMBL:AADN02034889
EMBL:AADN02034890 EMBL:AADN02034891 EMBL:AADN02034892
IPI:IPI00587441 Ensembl:ENSGALT00000005399 Uniprot:F1NSN8
Length = 141
Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 163 VQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRL 222
V++ E +L+ F R G GGQ NK V + H+P+G+ V+C + RS N+ A L
Sbjct: 30 VELTEAELKEQFVRGDGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVEKNRKIAREIL 89
Query: 223 KAKLLVIAEEQRASEIKQIRGDAVKAE 249
+ K+ + + + + K+I+ K +
Sbjct: 90 QEKVDLFYKGEDSDVFKEIKASEKKKQ 116
>UNIPROTKB|Q9H3J6 [details] [associations]
symbol:C12orf65 "Probable peptide chain release factor
C12orf65, mitochondrial" species:9606 "Homo sapiens" [GO:0003747
"translation release factor activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=NAS] InterPro:IPR000352 Pfam:PF00472
PROSITE:PS00745 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
EMBL:CH471054 eggNOG:COG1186 GO:GO:0003747 EMBL:AF061733
EMBL:AK095982 EMBL:BC018145 EMBL:BC020885 EMBL:BC062329
IPI:IPI00019211 IPI:IPI00382906 RefSeq:NP_001137377.1
RefSeq:NP_001181924.1 RefSeq:NP_689482.1 UniGene:Hs.319128
ProteinModelPortal:Q9H3J6 SMR:Q9H3J6 IntAct:Q9H3J6 STRING:Q9H3J6
PhosphoSite:Q9H3J6 DMDM:74733574 PRIDE:Q9H3J6 DNASU:91574
Ensembl:ENST00000253233 Ensembl:ENST00000366329
Ensembl:ENST00000429587 GeneID:91574 KEGG:hsa:91574 UCSC:uc001uen.3
CTD:91574 GeneCards:GC12P123717 HGNC:HGNC:26784 HPA:HPA038194
MIM:613541 MIM:613559 neXtProt:NX_Q9H3J6 Orphanet:254930
Orphanet:70474 PharmGKB:PA162377963 HOGENOM:HOG000217812
HOVERGEN:HBG094928 InParanoid:Q9H3J6 OMA:WESSKNV OrthoDB:EOG4T784Q
PhylomeDB:Q9H3J6 GenomeRNAi:91574 NextBio:77303 ArrayExpress:Q9H3J6
Bgee:Q9H3J6 CleanEx:HS_C12orf65 Genevestigator:Q9H3J6
Uniprot:Q9H3J6
Length = 166
Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 163 VQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRL 222
+ + E +LE F + G GGQ NK V + HIP+G+ V+C + RS N+ A L
Sbjct: 53 LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
Query: 223 KAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDV 268
+ K+ V + + K+ R A K + ++ KL+K++
Sbjct: 113 QEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKEL 158
>UNIPROTKB|F5H4X5 [details] [associations]
symbol:C12orf65 "Probable peptide chain release factor
C12orf65, mitochondrial" species:9606 "Homo sapiens" [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 HGNC:HGNC:26784
EMBL:AC073857 EMBL:AC068768 IPI:IPI01014644 Ensembl:ENST00000543139
ArrayExpress:F5H4X5 Bgee:F5H4X5 Uniprot:F5H4X5
Length = 138
Score = 114 (45.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 163 VQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRL 222
+ + E +LE F + G GGQ NK V + HIP+G+ V+C + RS N+ A L
Sbjct: 53 LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
Query: 223 KAKLLVIAEEQRASEIKQIRGDAVK 247
+ K+ V + + K+ R A K
Sbjct: 113 QEKVDVFYNGENSPVHKEKREAAKK 137
>TAIR|locus:2006897 [details] [associations]
symbol:AT1G33330 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0006415 "translational termination" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=RCA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 EMBL:CP002684 GO:GO:0009507 Gene3D:3.30.160.20
GO:GO:0003747 EMBL:AC027035 EMBL:BT006129 EMBL:AK117494
IPI:IPI00545134 RefSeq:NP_174601.2 UniGene:At.28050
ProteinModelPortal:Q9C875 SMR:Q9C875 STRING:Q9C875 PRIDE:Q9C875
EnsemblPlants:AT1G33330.1 GeneID:840227 KEGG:ath:AT1G33330
TAIR:At1g33330 HOGENOM:HOG000152202 InParanoid:Q9C875 OMA:KSTIRTS
PhylomeDB:Q9C875 ProtClustDB:CLSN2680351 ArrayExpress:Q9C875
Genevestigator:Q9C875 Uniprot:Q9C875
Length = 257
Score = 130 (50.8 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 176 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 228
R G GGQ+ NK ++AVR+ H+PTG+ + E+RSQ N+ AL+RL+ L +
Sbjct: 104 RVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRASALNRLRTLLAI 156
>SGD|S000004271 [details] [associations]
symbol:YLR281C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0006415 "translational
termination" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 InterPro:IPR014720 SGD:S000004271
GO:GO:0005739 Gene3D:3.30.160.20 EMBL:BK006945 EMBL:U17243
eggNOG:COG1186 GO:GO:0003747 HOGENOM:HOG000217812
GeneTree:ENSGT00390000012759 EMBL:AY557931 PIR:S50367
RefSeq:NP_013383.1 ProteinModelPortal:Q05863 SMR:Q05863
DIP:DIP-2590N STRING:Q05863 EnsemblFungi:YLR281C GeneID:850987
KEGG:sce:YLR281C CYGD:YLR281c OMA:KHERARA OrthoDB:EOG4WHCWF
NextBio:967507 Genevestigator:Q05863 GermOnline:YLR281C
Uniprot:Q05863
Length = 155
Score = 112 (44.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/118 (32%), Positives = 62/118 (52%)
Query: 143 AQTSFSGAEVMPLLPEESMDVQ---IPEEDLEIS--FSRAG-GKGGQNVNKVETAVRITH 196
++ S S A V+ L+ + + + PE + + + F G G GGQ +NK + V++ H
Sbjct: 6 SKRSISSAAVL-LIKKNKLPPRPKFTPEMEAQCTEKFLHGGRGPGGQKINKCNSKVQLRH 64
Query: 197 IPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS-EIKQIRGDAVKAEWGQQ 253
PTG+ V C E RS+ N+ L+RLK +A E AS + R +A+ +W +Q
Sbjct: 65 EPTGIVVECQETRSREQNR--KLARLK-----LARELAASYDTMPSREEAL-LQWHRQ 114
>UNIPROTKB|F1RFL3 [details] [associations]
symbol:C12orf65 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:CU462966
Ensembl:ENSSSCT00000010716 Uniprot:F1RFL3
Length = 187
Score = 120 (47.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/135 (30%), Positives = 64/135 (47%)
Query: 134 ITAGAGGTDAQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVR 193
+T G G Q + G + P L S+D E +LE F + G GGQ NK V
Sbjct: 35 LTPGTAGAPVQAA--GKKDRPALL--SLD----ERELEEQFVKGHGPGGQATNKTSNCVV 86
Query: 194 ITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQ 253
+ HIP+G+ V+C + RS N+ A L+ K+ V + + K+ R +A K + ++
Sbjct: 87 LRHIPSGIVVKCHQTRSVDQNRKLARRILQEKVDVFYNGENSPVYKEKR-EAEKRKQERK 145
Query: 254 IR-NYVFHPYKLVKD 267
R KL+K+
Sbjct: 146 KRAKETLEKKKLLKE 160
>UNIPROTKB|F1M2Z8 [details] [associations]
symbol:RGD1563482 "Protein RGD1563482" species:10116
"Rattus norvegicus" [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 RGD:1563482 IPI:IPI00370893
Ensembl:ENSRNOT00000001421 ArrayExpress:F1M2Z8 Uniprot:F1M2Z8
Length = 183
Score = 117 (46.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 150 AEVMPLLPEESMDVQIP--EEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTE 207
A M + ++ +P E +LE F + G GGQ NK V + H+P+G+ V+C +
Sbjct: 40 ATAMQVAGKKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQ 99
Query: 208 ERSQLANKIKALSRLKAKLLVIAEEQRASEIKQ-IRGDAVKAEWGQQIRNYVFHPYKLVK 266
RS N+ A L+ K+ V + + K+ + G+ K E ++ + KL+K
Sbjct: 100 TRSVDQNRKMARKILQEKVDVFYNGENSPIHKEKLEGERRKREKKKRAKE-TLEKKKLLK 158
Query: 267 DV 268
++
Sbjct: 159 EL 160
>UNIPROTKB|Q8EJF4 [details] [associations]
symbol:yaeJ "Stop codon-independent peptidyl-tRNA
hydrolyzing factor YaeJ" species:211586 "Shewanella oneidensis
MR-1" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000352 Pfam:PF00472 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000244440 KO:K15034
OMA:VLIIKAQ ProtClustDB:PRK09256 GO:GO:0003747 RefSeq:NP_716149.2
ProteinModelPortal:Q8EJF4 GeneID:1168384 KEGG:son:SO_0513
PATRIC:23520711 Uniprot:Q8EJF4
Length = 142
Score = 95 (38.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 163 VQIPEEDLEISFSRAGGKGGQNVNKVETAVRI 194
V++PE ++E F R+ G GGQNVNKV TA ++
Sbjct: 13 VELPENEIEWQFIRSSGAGGQNVNKVSTAAQL 44
Score = 45 (20.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 201 VTVRCTEERSQLANKIKALSRLKAKLLVIAE 231
+ ++C RSQ AN+ AL + A + +A+
Sbjct: 75 IIIKCQASRSQDANRQTALVQFIALVASVAD 105
>TIGR_CMR|SO_0513 [details] [associations]
symbol:SO_0513 "prokaryotic and mitochondrial release
factors family protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0008150 "biological_process" evidence=ND] [GO:0003747
"translation release factor activity" evidence=ISS]
InterPro:IPR000352 Pfam:PF00472 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000244440 KO:K15034
OMA:VLIIKAQ ProtClustDB:PRK09256 GO:GO:0003747 RefSeq:NP_716149.2
ProteinModelPortal:Q8EJF4 GeneID:1168384 KEGG:son:SO_0513
PATRIC:23520711 Uniprot:Q8EJF4
Length = 142
Score = 95 (38.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 163 VQIPEEDLEISFSRAGGKGGQNVNKVETAVRI 194
V++PE ++E F R+ G GGQNVNKV TA ++
Sbjct: 13 VELPENEIEWQFIRSSGAGGQNVNKVSTAAQL 44
Score = 45 (20.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 201 VTVRCTEERSQLANKIKALSRLKAKLLVIAE 231
+ ++C RSQ AN+ AL + A + +A+
Sbjct: 75 IIIKCQASRSQDANRQTALVQFIALVASVAD 105
>MGI|MGI:1919900 [details] [associations]
symbol:2810006K23Rik "RIKEN cDNA 2810006K23 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006415 "translational termination" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 InterPro:IPR014720 MGI:MGI:1919900
GO:GO:0005739 Gene3D:3.30.160.20 eggNOG:COG1186 GO:GO:0003747
HOGENOM:HOG000217812 HOVERGEN:HBG094928 OrthoDB:EOG4T784Q
EMBL:AK012682 EMBL:AK039255 EMBL:AK140664 EMBL:BC046909
IPI:IPI00465979 IPI:IPI00856726 RefSeq:NP_001128189.1
RefSeq:NP_082586.1 UniGene:Mm.121658 PDB:2RSM PDBsum:2RSM
ProteinModelPortal:Q80VP5 SMR:Q80VP5 STRING:Q80VP5 PaxDb:Q80VP5
PRIDE:Q80VP5 Ensembl:ENSMUST00000077376 Ensembl:ENSMUST00000111477
GeneID:72650 KEGG:mmu:72650 UCSC:uc008zpm.1 UCSC:uc008zpn.1
GeneTree:ENSGT00390000012759 InParanoid:Q80VP5 OMA:ELMSSEA
NextBio:336653 Bgee:Q80VP5 CleanEx:MM_2810006K23RIK
Genevestigator:Q80VP5 Uniprot:Q80VP5
Length = 184
Score = 114 (45.2 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 167 EEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKL 226
E +LE F + G GGQ NK V + H+P+G+ V+C + RS N+ A L+ K+
Sbjct: 60 ESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKV 119
Query: 227 LVIAEEQRASEIKQ-IRGDAVKAEWGQQIRNYVFHPYKLVKDVR 269
V + + K+ + + K E ++ + KL+K++R
Sbjct: 120 DVFYNGENSPVHKEKLEAERRKRERKKRAKE-TLEKKKLLKELR 162
>UNIPROTKB|E2QXR1 [details] [associations]
symbol:C12orf65 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 OMA:ELMSSEA EMBL:AAEX03014643
Ensembl:ENSCAFT00000012030 Uniprot:E2QXR1
Length = 239
Score = 117 (46.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 165 IPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKA 224
+ E +LE F + G GGQ NK V + HIP+G+ V+C + RS N+ A L+
Sbjct: 128 LDESELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARQILQE 187
Query: 225 KLLVIAEEQRASEIKQIRGDAVKAEWGQQIR-NYVFHPYKLVKDVR 269
K+ + + + K+ + +A K + ++ R KL+K++R
Sbjct: 188 KVDIFYNGENSIVYKE-KQEAEKKKQERKRRAKETLEKKKLLKELR 232
>UNIPROTKB|F1MLX1 [details] [associations]
symbol:C17H12orf65 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:DAAA02045238 IPI:IPI00704175
Ensembl:ENSBTAT00000027321 Uniprot:F1MLX1
Length = 173
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 163 VQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRL 222
+ + E +LE F + G GGQ NK V + H+P+G+ V+C + RS N+ A L
Sbjct: 54 LSLDERELEEQFVKGHGPGGQATNKTSNCVVLRHVPSGIVVKCHQTRSVDQNRKLARRIL 113
Query: 223 KAKL---------LVIAEEQRASEIKQIRGDAVK 247
+ K+ LV E++ A + KQ R K
Sbjct: 114 QEKVDVFYNGENSLVCREKREAEKRKQERKKRAK 147
>UNIPROTKB|Q5LWS3 [details] [associations]
symbol:SPO0127 "Peptidyl-tRNA hydrolase domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000352 Pfam:PF00472
PROSITE:PS00745 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0016787 HOGENOM:HOG000244440 KO:K15034 OMA:VLIIKAQ
ProtClustDB:PRK09256 GO:GO:0003747 RefSeq:YP_165399.1
ProteinModelPortal:Q5LWS3 GeneID:3196191 KEGG:sil:SPO0127
PATRIC:23373499 Uniprot:Q5LWS3
Length = 139
Score = 89 (36.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 162 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRI 194
D+ I + +L SF RA G GGQNVNKV +AV +
Sbjct: 7 DIAIQDWELSESFMRASGPGGQNVNKVSSAVEL 39
Score = 47 (21.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 201 VTVRCTEERSQLANK--IKA-LSRLKAKLLVIAEEQRASEIKQIRG 243
+ ++C E RSQ N+ ++A L L A+ LV + + A+ K RG
Sbjct: 71 IVLQCDETRSQARNREIVRARLVELIARALVAPKRRIAT--KPTRG 114
>TIGR_CMR|SPO_0127 [details] [associations]
symbol:SPO_0127 "peptidyl-tRNA hydrolase domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008150
"biological_process" evidence=ND] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=ISS] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016787 HOGENOM:HOG000244440
KO:K15034 OMA:VLIIKAQ ProtClustDB:PRK09256 GO:GO:0003747
RefSeq:YP_165399.1 ProteinModelPortal:Q5LWS3 GeneID:3196191
KEGG:sil:SPO0127 PATRIC:23373499 Uniprot:Q5LWS3
Length = 139
Score = 89 (36.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 162 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRI 194
D+ I + +L SF RA G GGQNVNKV +AV +
Sbjct: 7 DIAIQDWELSESFMRASGPGGQNVNKVSSAVEL 39
Score = 47 (21.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 201 VTVRCTEERSQLANK--IKA-LSRLKAKLLVIAEEQRASEIKQIRG 243
+ ++C E RSQ N+ ++A L L A+ LV + + A+ K RG
Sbjct: 71 IVLQCDETRSQARNREIVRARLVELIARALVAPKRRIAT--KPTRG 114
>UNIPROTKB|Q0BYR4 [details] [associations]
symbol:HNE_2699 "Peptidyl-tRNA hydrolase domain protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000352 Pfam:PF00472
PROSITE:PS00745 GO:GO:0016787 eggNOG:COG1186 HOGENOM:HOG000244440
KO:K15034 OMA:VLIIKAQ GO:GO:0003747 EMBL:CP000158
GenomeReviews:CP000158_GR RefSeq:YP_761379.1
ProteinModelPortal:Q0BYR4 STRING:Q0BYR4 GeneID:4287049
KEGG:hne:HNE_2699 PATRIC:32218269
BioCyc:HNEP228405:GI69-2707-MONOMER Uniprot:Q0BYR4
Length = 144
Score = 100 (40.3 bits), Expect = 0.00062, P = 0.00062
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 163 VQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT-HIPTGVTVRCTEERSQLANKIKALSR 221
+ +P +L +F RA G GGQNVNKV +AV++T H+ +ER K+ A SR
Sbjct: 13 ITVPAWELSEAFVRASGPGGQNVNKVSSAVQLTWHVQASSLPAPVKERFA---KLFA-SR 68
Query: 222 LKA--KLLVIAEEQRASEIKQ 240
+ A +L++ A E R+ + +
Sbjct: 69 ITADGRLMLEASEHRSQVLNR 89
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.349 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 307 274 0.00078 115 3 11 23 0.42 34
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 85
No. of states in DFA: 591 (63 KB)
Total size of DFA: 168 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.64u 0.17s 24.81t Elapsed: 00:00:01
Total cpu time: 24.65u 0.17s 24.82t Elapsed: 00:00:01
Start: Mon May 20 22:34:19 2013 End: Mon May 20 22:34:20 2013